RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3479
(518 letters)
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 220 bits (560), Expect = 5e-67
Identities = 147/345 (42%), Positives = 203/345 (58%), Gaps = 17/345 (4%)
Query: 175 GVAPEGETQPSTEVDLFISTEKIMVLNTDLKAPEGETQPSTEVDLFISTEKIMVLNTDLK 234
+ + E + + EG+ Q TEVDLFIST++I VLN D +
Sbjct: 26 NPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANSEGDAQTLTEVDLFISTQRIKVLNADTQ 85
Query: 235 EIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKIS-------RTPKMICHVFES 287
E MMDHALRTISYIADIG++VVLMARRR + + + + + KMICHVFES
Sbjct: 86 ETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIETTPGAQEGKKQYKMICHVFES 145
Query: 288 DEAQFIAQSIGQAFQVAYMEFLKANGIEDHSFVKEMDYQEVLNSQEIFGDELQMFAKKEL 347
++AQ IAQSIGQAF VAY EFL+ANGI + +Y +++N+QE++ D+L F+ E
Sbjct: 146 EDAQLIAQSIGQAFSVAYQEFLRANGINPEDL-SQKEYSDIINTQEMYNDDLIHFSNSEN 204
Query: 348 QKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 407
KE+ + K KGEILGVV+VESGWGS+LPTV++AN+ G AAR G+L+IGDQI+++NG S
Sbjct: 205 CKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTS 264
Query: 408 LVGLPLSTCQTYIKILMKTMPTSMFRLLTGQETPVVVPKAKGEILGVVIVESGWGSMLPT 467
LVGLPL+TCQ IK L + + T V++ + + G +
Sbjct: 265 LVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDL--------KYQLGFSVQN 316
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+I +L G A R G + +G +II +NG S+V +
Sbjct: 317 GIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALS 360
Score = 108 bits (270), Expect = 6e-26
Identities = 76/130 (58%), Positives = 93/130 (71%)
Query: 47 PPKISRTPKMICHVFESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARC 106
+ + E+ + K KGEILGVV+VESGWGS+LPTV++AN+ G AAR
Sbjct: 189 QEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARS 248
Query: 107 GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDTKY 166
G+L+IGDQI+++NG SLVGLPL+TCQ IK KNQT VKL +V C PV V IKRPD KY
Sbjct: 249 GKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKY 308
Query: 167 QLGFSVQNGV 176
QLGFSVQNG+
Sbjct: 309 QLGFSVQNGI 318
Score = 73.9 bits (180), Expect = 2e-14
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 369 GWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK-----IL 423
G + +I +L G A R G + +G +II +NG S+V + I
Sbjct: 309 QLGFSVQNGIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIH 367
Query: 424 MKTMPTSMFRLLTGQETPVVV 444
MKTMP +MFRLLTGQETP+ +
Sbjct: 368 MKTMPAAMFRLLTGQETPLYI 388
Score = 61.1 bits (147), Expect = 3e-10
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 84 GWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTV 143
G + +I +L G A R G + +G +II +NG S+V + NS
Sbjct: 309 QLGFSVQNGIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVG--E 365
Query: 144 VKLTVVPCAPVVEVKIKRPDTKY 166
+ + +P A + + + Y
Sbjct: 366 IHMKTMP-AAMFRLLTGQETPLY 387
Score = 60.8 bits (146), Expect = 4e-10
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 7/71 (9%)
Query: 2 LTFNDRVHKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKIS-------RTP 54
+ + +E MMDHALRTISYIADIG++VVLMARRR + + + + +
Sbjct: 77 IKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIETTPGAQEGKKQY 136
Query: 55 KMICHVFESDE 65
KMICHVFES++
Sbjct: 137 KMICHVFESED 147
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Length = 172
Score = 123 bits (308), Expect = 5e-33
Identities = 78/118 (66%), Positives = 89/118 (75%), Gaps = 7/118 (5%)
Query: 205 KAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFV 264
KAPEGE+QP TEVDLFI T++I VLN D +E MMDH LRTISYIADIG++VVLMARRR
Sbjct: 54 KAPEGESQPMTEVDLFILTQRIKVLNADTQETMMDHPLRTISYIADIGNIVVLMARRRIP 113
Query: 265 SQEADEPPKIS-------RTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGIE 315
+ E + S R KMICHVFES++AQ IAQSIGQAF VAY EFL+ANGI
Sbjct: 114 RSNSQENVEASHPSQDGKRQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGIN 171
Score = 59.1 bits (142), Expect = 1e-10
Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 7/71 (9%)
Query: 2 LTFNDRVHKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKIS-------RTP 54
+ + +E MMDH LRTISYIADIG++VVLMARRR + E + S R
Sbjct: 75 IKVLNADTQETMMDHPLRTISYIADIGNIVVLMARRRIPRSNSQENVEASHPSQDGKRQY 134
Query: 55 KMICHVFESDE 65
KMICHVFES++
Sbjct: 135 KMICHVFESED 145
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB
domain, chimera protein, protein transport; HET: IPA
GOL; 1.90A {Rattus norvegicus}
Length = 162
Score = 121 bits (304), Expect = 1e-32
Identities = 78/129 (60%), Positives = 96/129 (74%), Gaps = 11/129 (8%)
Query: 207 PEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQ 266
PEGE+QP TEVDLFIST++I VLN D +E MMDH LRTISYIADIG++VVLMARRR
Sbjct: 45 PEGESQPMTEVDLFISTQRIKVLNADTQEPMMDHPLRTISYIADIGNIVVLMARRR---- 100
Query: 267 EADEPPKISRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGIEDHSFVKEMDYQ 326
KMICHVFES++AQ IAQSIGQAF VAY EFL+ANGI + + +Y
Sbjct: 101 ------MPRSQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPED-LSQKEYS 153
Query: 327 EVLNSQEIF 335
++LN+Q+++
Sbjct: 154 DLLNTQDMY 162
Score = 49.4 bits (117), Expect = 3e-07
Identities = 33/64 (51%), Positives = 40/64 (62%), Gaps = 10/64 (15%)
Query: 2 LTFNDRVHKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVF 61
+ + +E MMDH LRTISYIADIG++VVLMARRR KMICHVF
Sbjct: 64 IKVLNADTQEPMMDHPLRTISYIADIGNIVVLMARRR----------MPRSQYKMICHVF 113
Query: 62 ESDE 65
ES++
Sbjct: 114 ESED 117
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 116 bits (293), Expect = 1e-31
Identities = 52/90 (57%), Positives = 67/90 (74%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
EV + K +GE LGV +VESGWGS+LPT VIANL G A R G L+IGD++ A+NG SLV
Sbjct: 12 EVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLV 71
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVPCAPV 154
GLPL+ CQ ++ +K+QT V L++V C PV
Sbjct: 72 GLPLAACQAAVRETKSQTSVTLSIVHCPPV 101
Score = 96.7 bits (241), Expect = 2e-24
Identities = 43/73 (58%), Positives = 55/73 (75%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+EV + K +GE LGV +VESGWGS+LPT VIANL G A R G L+IGD++ A+NG SL
Sbjct: 11 REVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSL 70
Query: 409 VGLPLSTCQTYIK 421
VGLPL+ CQ ++
Sbjct: 71 VGLPLAACQAAVR 83
Score = 94.4 bits (235), Expect = 1e-23
Identities = 42/71 (59%), Positives = 53/71 (74%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
V + K +GE LGV +VESGWGS+LPT VIANL G A R G L+IGD++ A+NG SLVG
Sbjct: 13 VHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVG 72
Query: 502 LPLSTCQTYIK 512
LPL+ CQ ++
Sbjct: 73 LPLAACQAAVR 83
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 119 bits (300), Expect = 1e-31
Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 16/176 (9%)
Query: 350 EVVVPKAKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNGVS 407
EVV+ G+ + S + + + +I+ + A RCG L IGD+++A+NG+
Sbjct: 9 EVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIP 68
Query: 408 LVGLPLSTCQTYIKILMKTMPTSMFRLLTGQETP-----------VVVPKAKGEILGVVI 456
++L + TS L + V +PK LG+ I
Sbjct: 69 TEDSTFEEA---NQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITI 125
Query: 457 VESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+VI+++ A R G L +GD+++A++ + L + ++
Sbjct: 126 SSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQ 181
Score = 86.7 bits (215), Expect = 7e-20
Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 57 ICHVFESDEVVVPKAKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQ 114
+ H E+ EVV+ G+ + S + + + +I+ + A RCG L IGD+
Sbjct: 2 VVHT-ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDR 60
Query: 115 IIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV--------VPCAPVVEVKIKRPDTKY 166
++A+NG+ +++S + V L + +P + VK+ +
Sbjct: 61 VMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKH-SV 119
Query: 167 QLGFSVQNG 175
+LG ++ +
Sbjct: 120 ELGITISSP 128
Score = 70.6 bits (173), Expect = 2e-14
Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 14/121 (11%)
Query: 28 GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDEVVVPKAKGEILGVVIVESGWGS 87
+ F E+ P + V +PK LG+ I
Sbjct: 85 SITSKVTLEIEFDVAESVIPSSGTF------------HVKLPKKHSVELGITISSPSSRK 132
Query: 88 MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLT 147
+VI+++ A R G L +GD+++A++ + L + ++ ++ +VKL
Sbjct: 133 PGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCED--LVKLK 190
Query: 148 V 148
+
Sbjct: 191 I 191
Score = 63.3 bits (154), Expect = 8e-12
Identities = 17/85 (20%), Positives = 34/85 (40%)
Query: 337 DELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNI 396
D + V +PK LG+ I +VI+++ A R G L +
Sbjct: 97 DVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLEL 156
Query: 397 GDQIIAVNGVSLVGLPLSTCQTYIK 421
GD+++A++ + L + ++
Sbjct: 157 GDKLLAIDNIRLDSCSMEDAVQILQ 181
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 114 bits (287), Expect = 1e-29
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 13/175 (7%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
V + K +G LG+ + G ++NL G AAR QL++GD I AVNG++L
Sbjct: 9 TVVELMKKEGTTLGLTVS--GGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINL 66
Query: 409 VGLPLSTCQTYIK---------ILMKTMPTSMFRLLTGQETPVVVPKAKGEILGVVIVES 459
+ +K + + P S+ T V +G G VI
Sbjct: 67 AKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRGG 126
Query: 460 GWGSMLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+ VVI + P G A R G + GD++++V+G+ L+G + + +K
Sbjct: 127 AHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK 181
Score = 79.8 bits (197), Expect = 2e-17
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 14/138 (10%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
V + K +G LG+ + G ++NL G AAR QL++GD I AVNG++L
Sbjct: 10 VVELMKKEGTTLGLTVS--GGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLA 67
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVE--------VKIKRPDTKYQLGFSVQNGV 176
+ +KN + V+++ ++ V++ GF ++ G
Sbjct: 68 KFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRGGA 127
Query: 177 APEGETQPSTEVDLFIST 194
+ + I+
Sbjct: 128 ----HDDRNKSRPVVITC 141
Score = 68.6 bits (168), Expect = 1e-13
Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 28 GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDEVVVPKAKGEILGVVIVESGWGS 87
G+ VVL + + +F + EV + K +G G VI
Sbjct: 82 GERVVLEVEY----------ELPPVSIQGSSVMFRTVEVTLHK-EGNTFGFVIRGGAHDD 130
Query: 88 MLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVK 145
+ VVI + P G A R G + GD++++V+G+ L+G + + +K +
Sbjct: 131 RNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE--AT 188
Query: 146 LTVVPCAPVVE 156
L + V++
Sbjct: 189 LLIEYDVSVMD 199
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 113 bits (284), Expect = 3e-29
Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 15/170 (8%)
Query: 350 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 409
+ + + + +GV++ + VI ++ P G A +L I D I +NG +
Sbjct: 21 LIELKV-EKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIH 79
Query: 410 GLPLSTCQTYIKILMKTMPTSMFRLLTGQETP-------VVVPKAKGEILGVVIVESGWG 462
++T + + L T L + P V + K G+ LG+ + + G
Sbjct: 80 VGSMTTLKVH--QLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIG 137
Query: 463 SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
IA+L +L GD I NG +L GLP C K
Sbjct: 138 -----CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFK 182
Score = 70.3 bits (172), Expect = 4e-14
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 7/131 (5%)
Query: 48 PKISRTPKMICHVFESDEVVVPKAKG-EILGVVIVESGWGSMLPTVVIANLAPAGAAARC 106
P + + ++++ + +GV++ + VI ++ P G A
Sbjct: 2 PGSKPQEPATAEIKPNKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAAD 61
Query: 107 GQLNIGDQIIAVNGVSLVGLPLSTCQTY-IKNSKNQTVVKLTVV----PCAPVVEVKIKR 161
+L I D I +NG + ++T + + + ++ + V LTV P V + +
Sbjct: 62 KRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMK 121
Query: 162 PDTKYQLGFSV 172
K +LG S+
Sbjct: 122 KAGK-ELGLSL 131
Score = 69.9 bits (171), Expect = 5e-14
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 66 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 125
V + K G+ LG+ + + G IA+L +L GD I NG +L G
Sbjct: 117 VDLMKKAGKELGLSLSPNEIG-----CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEG 171
Query: 126 LPLSTCQTYIKNSKNQTVVKLTVVPCAPVVE 156
LP C K + V + V P +
Sbjct: 172 LPFQVCYALFKGANG--KVSMEVTRPKPTLR 200
Score = 66.5 bits (162), Expect = 8e-13
Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 434 LLTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 493
+ ++ + + + + +GV++ + VI ++ P G A +L I D I
Sbjct: 14 IKPNKKILIELKV-EKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICD 72
Query: 494 VNGVSLVGLPLSTCQ 508
+NG + ++T +
Sbjct: 73 INGTPIHVGSMTTLK 87
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 112 bits (282), Expect = 5e-29
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 13/177 (7%)
Query: 346 ELQKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 402
++ E + + LG I ++ P++ I + P GAAA+ G+L + D I+
Sbjct: 3 SMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 62
Query: 403 VNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLL----TGQETPVVVPKAKGEILGVVIVE 458
VN V + + S ++ L + ++ ++ + + LG I
Sbjct: 63 VNEVDVREVTHSAA---VEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAG 119
Query: 459 SGWGSMLPT---VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+P + + + GAA + G+L IGD+I+AVN V L + +K
Sbjct: 120 GVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK 176
Score = 87.9 bits (218), Expect = 3e-20
Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
Query: 62 ESDEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 118
E +E+ + + LG I ++ P++ I + P GAAA+ G+L + D I+ V
Sbjct: 5 EYEEITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 63
Query: 119 NGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDTKYQLGFSVQNGVAP 178
N V + + S +K + + + + ++IK LGFS+ GV
Sbjct: 64 NEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGV-- 121
Query: 179 EGETQPSTEVDLFIS 193
G + ++++
Sbjct: 122 -GNQHIPGDNSIYVT 135
Score = 62.5 bits (152), Expect = 2e-11
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 49 KISRTPKMICHVFESDEVVVPKAKGEILGVVIVESGWGSMLPT---VVIANLAPAGAAAR 105
+ R V E + LG I +P + + + GAA +
Sbjct: 90 YVMRRKPPAEKVMEIK----LIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHK 145
Query: 106 CGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
G+L IGD+I+AVN V L + +KN+ + VV L V
Sbjct: 146 DGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYD--VVYLKV 186
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper
motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Length = 175
Score = 106 bits (265), Expect = 6e-27
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 8/123 (6%)
Query: 204 LKAPEG--ETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARR 261
+ A TE L ++ + + +++ + + L + A + L
Sbjct: 57 ILAARAIHNIFRMTESHLLVTCDCLKLIDPQTQVTRLTFPLPCVVLYATHQENKRLFG-- 114
Query: 262 RFVSQEADEPPKISRTPKMICHVFESD-EAQFIAQSIGQAFQVAYMEFLKANGIEDHSFV 320
FV + + +C++FES+ E + I S+G A Q+A L E +
Sbjct: 115 -FVLR--TSSGRSESNLSSVCYIFESNNEGEKICDSVGLAKQIALHAELDRRASEKQKEI 171
Query: 321 KEM 323
+ +
Sbjct: 172 ERV 174
Score = 53.9 bits (129), Expect = 1e-08
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 2 LTFNDRVHKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVF 61
L D + + L + A + L FV + + +C++F
Sbjct: 81 LKLIDPQTQVTRLTFPLPCVVLYATHQENKRLFG---FVLR--TSSGRSESNLSSVCYIF 135
Query: 62 ESDE 65
ES+
Sbjct: 136 ESNN 139
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.84A {Homo sapiens}
Length = 160
Score = 95.4 bits (237), Expect = 3e-23
Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 6/114 (5%)
Query: 210 ETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEAD 269
TE L ++ + + +++ + + L + A + L FV +
Sbjct: 52 NIFRMTESHLLVTCDCLKLIDPQTQVTRLTFPLPCVVLYATHQENKRLFG---FVLR--T 106
Query: 270 EPPKISRTPKMICHVFESD-EAQFIAQSIGQAFQVAYMEFLKANGIEDHSFVKE 322
+ +C++FES+ E + I S+G A Q+A L E ++
Sbjct: 107 SSGRSESNLSSVCYIFESNNEGEKICDSVGLAKQIALHAELDRRASEKQKEIER 160
Score = 50.0 bits (119), Expect = 2e-07
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 1 MLTFNDRVHKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHV 60
L D + + L + A + L FV + + +C++
Sbjct: 67 CLKLIDPQTQVTRLTFPLPCVVLYATHQENKRLFG---FVLR--TSSGRSESNLSSVCYI 121
Query: 61 FESDE 65
FES+
Sbjct: 122 FESNN 126
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus}
SCOP: b.55.1.2 PDB: 1m7e_A
Length = 160
Score = 90.8 bits (225), Expect = 1e-21
Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 13/121 (10%)
Query: 197 IMVLNTDLKAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVV 256
+M L A + Q + + IS I +++ I +H + IS+IA
Sbjct: 42 MMKLKGMAAAGRSQGQHKQRIWVNISLSGIKIIDEKTGVIEHEHPVNKISFIARDVTDNR 101
Query: 257 LMARRRFVSQEADEPPKISRTPKMICHVFES-DEAQFIAQSIGQAFQVAYMEFLKANGIE 315
+V + ++ +A+ + + FQV Y K +
Sbjct: 102 AFG---YVCGG---------EGQHQFFAIKTGQQAEPLVVDLKDLFQVIYNVKKKEEDKK 149
Query: 316 D 316
Sbjct: 150 K 150
Score = 40.0 bits (93), Expect = 5e-04
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 12/64 (18%)
Query: 2 LTFNDRVHKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVF 61
+ D I +H + IS+IA +V +
Sbjct: 71 IKIIDEKTGVIEHEHPVNKISFIARDVTDNRAFG---YVCGG---------EGQHQFFAI 118
Query: 62 ESDE 65
++ +
Sbjct: 119 KTGQ 122
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain,
phosphoprotein, signaling protei structural genomics,
structural genomics consortium, SGC; 2.70A {Homo
sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Length = 168
Score = 88.9 bits (220), Expect = 7e-21
Identities = 18/104 (17%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 209 GETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEA 268
+ S + L++S + + V++ K++++D + +S+ A +L + ++ ++
Sbjct: 72 AMGRKSVKSVLWVSADGLRVVDDKTKDLLVDQTIEKVSFCAPDRNLDKAFS---YICRD- 127
Query: 269 DEPPKISRTPKMICHVFES--DEAQFIAQSIGQAFQVAYMEFLK 310
T + ICH F + D + ++ ++G AF +
Sbjct: 128 ------GTTRRWICHCFLALKDSGERLSHAVGCAFAACLERKQR 165
Score = 44.2 bits (104), Expect = 2e-05
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 2 LTFNDRVHKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVF 61
L D K++++D + +S+ A +L + ++ ++ T + ICH F
Sbjct: 89 LRVVDDKTKDLLVDQTIEKVSFCAPDRNLDKAFS---YICRD-------GTTRRWICHCF 138
Query: 62 ESDE 65
+ +
Sbjct: 139 LALK 142
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus
musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Length = 152
Score = 87.3 bits (216), Expect = 2e-20
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 17/133 (12%)
Query: 185 STEVD----LFISTEKIMVLNTDLKAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDH 240
EV + + +M L + + + ++ L IS I + + + H
Sbjct: 27 IDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTGALQHHH 86
Query: 241 ALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFES-DEAQFIAQSIGQ 299
A+ ISYIA +V + ++ A+ + +
Sbjct: 87 AVHEISYIAKDITDHRAFG---YVCGKEG---------NHRFVAIKTAQAAEPVILDLRD 134
Query: 300 AFQVAYMEFLKAN 312
FQ+ Y +
Sbjct: 135 LFQLIYELKQREE 147
Score = 36.0 bits (83), Expect = 0.008
Identities = 9/65 (13%), Positives = 17/65 (26%), Gaps = 12/65 (18%)
Query: 2 LTFNDRVHKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVF 61
+ D + HA+ ISYIA +V +
Sbjct: 72 IKIFDEKTGALQHHHAVHEISYIAKDITDHRAFG---YVCGKEG---------NHRFVAI 119
Query: 62 ESDEV 66
++ +
Sbjct: 120 KTAQA 124
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 86.8 bits (215), Expect = 4e-20
Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 23/160 (14%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+EV++ K + +G+ + G + + + A+ G L GDQ++ +NG +
Sbjct: 6 REVILCKDQDGKIGLRLKSIDNG-----IFVQLVQANSPASLVG-LRFGDQVLQINGENC 59
Query: 409 VGLPLSTCQTYIKILMKTMPTSMFRLL---TGQETPVVVPKAKGEILGVVIVESGWGSML 465
G ++K + E + + K +G + S++
Sbjct: 60 AGWSSDKAHK----VLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIV 115
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 505
+AAR G L I +NG +++GL S
Sbjct: 116 KD---------SSAARNG-LLTEHNICEINGQNVIGLKDS 145
Score = 80.3 bits (198), Expect = 7e-18
Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
EV++ K + +G+ + G + + + A+ G L GDQ++ +NG +
Sbjct: 7 EVILCKDQDGKIGLRLKSIDNG-----IFVQLVQANSPASLVG-LRFGDQVLQINGENCA 60
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDTKYQLGFSVQNG 175
G +K + + +T+ P D+ +GF +NG
Sbjct: 61 GWSSDKAHKVLKQAFG-EKITMTIR-DRPFERTITMHKDSTGHVGFIFKNG 109
Score = 62.9 bits (153), Expect = 7e-12
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
V++ K + +G+ + G + + + A+ G L GDQ++ +NG + G
Sbjct: 8 VILCKDQDGKIGLRLKSIDNG-----IFVQLVQANSPASLVG-LRFGDQVLQINGENCAG 61
Query: 502 LPLSTCQTYIK 512
+K
Sbjct: 62 WSSDKAHKVLK 72
Score = 41.7 bits (98), Expect = 1e-04
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 12/94 (12%)
Query: 57 ICHVFESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 116
I + + K +G + S++ +AAR G L I
Sbjct: 83 IRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKD---------SSAARNG-LLTEHNIC 132
Query: 117 AVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVP 150
+NG +++GL S + S VV +T++P
Sbjct: 133 EINGQNVIGLKDSQIADILSTSGT--VVTITIMP 164
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 91.1 bits (225), Expect = 2e-19
Identities = 77/451 (17%), Positives = 152/451 (33%), Gaps = 61/451 (13%)
Query: 61 FESDEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 117
E +E+ + + LG I ++ P++ I + P GAAA+ G+L + D I+
Sbjct: 58 MEYEEITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 116
Query: 118 VNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDTK--YQLGFSVQNG 175
VN V + + S +K + + V+L V+ P E ++ K LGFS+
Sbjct: 117 VNEVDVREVTHSAAVEALKEAGSI--VRLYVMRRKPPAEKVMEIKLIKGPKGLGFSI--- 171
Query: 176 VAPEGETQPSTEVDLFISTEKIMVLNTDLKAPEGETQPSTEVDLFISTEKIMVLNTDLKE 235
G + ++++ ++ +G Q ++ + V + L++
Sbjct: 172 AGGVGNQHIPGDNSIYVT----KIIEGGAAHKDGRLQIGDKI--------LAVNSVGLED 219
Query: 236 IMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDEAQFIAQ 295
+M + A+ + D V + +P + + +Q +
Sbjct: 220 VMHEDAVAALKNTYD------------VVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDN 267
Query: 296 SIGQAFQVAYMEFLKANGIEDHSFVKEMDYQEVLNSQEIFGDELQMFAKKELQKEVVVPK 355
I + +Y+ + S + + L +E E + +V+ +
Sbjct: 268 EISHS---SYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREP---------RRIVIHR 315
Query: 356 AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP--- 412
LG IV G + I+ + G A G+L GDQI++VNGV L
Sbjct: 316 -GSTGLGFNIV---GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 371
Query: 413 ----LSTCQTYIKILMKTMPTSMFRLLTGQETPVVVPKAKGEILGVVIVESGWGSMLPTV 468
L + I+ + P R G + S
Sbjct: 372 AAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPKRGFYIR 431
Query: 469 VIANLAP---AGAAARCGQLNIGDQIIAVNG 496
+ + G ++ GD + ++
Sbjct: 432 ALFDYDKTKDCGFLSQALSFRFGDVLHVIDA 462
Score = 81.1 bits (199), Expect = 2e-16
Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 7/174 (4%)
Query: 346 ELQKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 402
E++ E + + LG I ++ P++ I + P GAAA+ G+L + D I+
Sbjct: 57 EMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 116
Query: 403 VNGVSLVGLPLSTCQTYIKILMKT-MPTSMFRLLTGQETPVVVPKAKGEILGVVIVE--- 458
VN V + + S +K M R ++ + + LG I
Sbjct: 117 VNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVG 176
Query: 459 SGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+ ++ + + GAA + G+L IGD+I+AVN V L + +K
Sbjct: 177 NQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK 230
Score = 53.8 bits (128), Expect = 1e-07
Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 41 SQEADEPPKISRTPKMICHVFESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPA 100
+ P E +V+ + LG IV G + I+ +
Sbjct: 286 TSPRRYSPVAKDLLGEEDIPREPRRIVIHR-GSTGLGFNIV---GGEDGEGIFISFILAG 341
Query: 101 GAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPC 151
G A G+L GDQI++VNGV L +KN+ V +
Sbjct: 342 GPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQT--VTIIAQYK 390
Score = 48.4 bits (114), Expect = 4e-06
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 438 QETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 497
+E +V LG IV G + I+ + G A G+L GDQI++VNGV
Sbjct: 306 REPRRIVIHRGSTGLGFNIV---GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGV 362
Query: 498 SLVGLPLSTCQTYIK 512
L +K
Sbjct: 363 DLRNASHEQAAIALK 377
Score = 42.6 bits (99), Expect = 3e-04
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 49 KISRTPKMICHVFESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQ 108
+ R V E + PK G + V + ++ + + GAA + G+
Sbjct: 144 YVMRRKPPAEKVMEIKLIKGPKGLGFSI-AGGVGNQHIPGDNSIYVTKIIEGGAAHKDGR 202
Query: 109 LNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQ 141
L IGD+I+AVN V L + +KN+ +
Sbjct: 203 LQIGDKILAVNSVGLEDVMHEDAVAALKNTYDV 235
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 82.5 bits (204), Expect = 3e-19
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 58 CHVFESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 117
+V + + K E + +E G S + VV++ + GAA R G + GD+I+A
Sbjct: 11 PEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMA 70
Query: 118 VNGVSLVGLPLSTCQTYIKNSKNQT--VVKLTVVPCAP 153
+NG + L+ + ++ + NQ + L V C P
Sbjct: 71 INGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPP 108
Score = 73.3 bits (180), Expect = 5e-16
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
K+V + + K E + +E G S + VV++ + GAA R G + GD+I+A+NG +
Sbjct: 17 KDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIV 76
Query: 409 VGLPLSTCQTYIK 421
L+ + ++
Sbjct: 77 TDYTLAEAEAALQ 89
Score = 72.5 bits (178), Expect = 1e-15
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 430 SMFRLLTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGD 489
+MF V + + K E + +E G S + VV++ + GAA R G + GD
Sbjct: 7 TMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGD 66
Query: 490 QIIAVNGVSLVGLPLSTCQTYIK 512
+I+A+NG + L+ + ++
Sbjct: 67 EIMAINGKIVTDYTLAEAEAALQ 89
>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling
protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A
2l1c_A* 1shc_A*
Length = 207
Score = 84.9 bits (209), Expect = 4e-19
Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 20/113 (17%)
Query: 204 LKAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIA----DIGDLVVLMA 259
+ + L +ST + ++ D K+I+ +H +++IS+ + D + V +A
Sbjct: 109 ILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVA 168
Query: 260 RRRFVSQEADEPPKISRTPKMICHVFESDE--AQFIAQSIGQAFQVAYMEFLK 310
+ + CH+ E E AQ + +IGQAF++ + ++L+
Sbjct: 169 K--------------DPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLR 207
Score = 32.9 bits (74), Expect = 0.16
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 18/68 (26%)
Query: 2 LTFNDRVHKEIMMDHALRTISYIA----DIGDLVVLMARRRFVSQEADEPPKISRTPKMI 57
L K+I+ +H +++IS+ + D + V +A+ +
Sbjct: 131 LNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAK--------------DPVNQRA 176
Query: 58 CHVFESDE 65
CH+ E E
Sbjct: 177 CHILECPE 184
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 80.5 bits (199), Expect = 8e-19
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
+ K E +G+ + + S +A + G R G L++GD+I+ +NG ++
Sbjct: 15 LIQFEKVTEEPMGICLKLNEKQS----CTVARILHGGMIHRQGSLHVGDEILEINGTNVT 70
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVP 150
+ Q +K +K + L V+P
Sbjct: 71 NHSVDQLQKAMKETKGM--ISLKVIP 94
Score = 73.6 bits (181), Expect = 2e-16
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+ + K E +G+ + + S +A + G R G L++GD+I+ +NG ++
Sbjct: 14 RLIQFEKVTEEPMGICLKLNEKQS----CTVARILHGGMIHRQGSLHVGDEILEINGTNV 69
Query: 409 VGLPLSTCQTYIK-----ILMKTMPTS 430
+ Q +K I +K +P
Sbjct: 70 TNHSVDQLQKAMKETKGMISLKVIPNQ 96
Score = 70.5 bits (173), Expect = 2e-15
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ K E +G+ + + S +A + G R G L++GD+I+ +NG ++
Sbjct: 16 IQFEKVTEEPMGICLKLNEKQS----CTVARILHGGMIHRQGSLHVGDEILEINGTNVTN 71
Query: 502 LPLSTCQTYIK 512
+ Q +K
Sbjct: 72 HSVDQLQKAMK 82
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S
disease, APP, AICD, Fe65, PTB domain, alternative
splicing, polymorphism, alzheimer disease, apoptosis;
2.00A {Homo sapiens} PDB: 3dxd_A 3dxc_A
Length = 140
Score = 79.1 bits (195), Expect = 9e-18
Identities = 16/111 (14%), Positives = 42/111 (37%), Gaps = 13/111 (11%)
Query: 209 GETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEA 268
+ T + ++ + +L+ + ++ + +R +S++A D+ F+
Sbjct: 40 SSREQWTPSHVSVAPATLTILHQQTEAVLGECRVRFLSFLAVGRDVHTFA----FIMAAG 95
Query: 269 DEPPKISRTPKMICHVFESDE-AQFIAQSIGQAFQVAYMEFLKANGIEDHS 318
CH+F + A +++++ A + Y + L A H
Sbjct: 96 PA--------SFCCHMFWCEPNAASLSEAVQAACMLRYQKCLDARSQHHHH 138
Score = 42.1 bits (99), Expect = 7e-05
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 12/65 (18%)
Query: 1 MLTFNDRVHKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHV 60
LT + + ++ + +R +S++A D+ F+ CH+
Sbjct: 56 TLTILHQQTEAVLGECRVRFLSFLAVGRDVHTFA----FIMAAGPA--------SFCCHM 103
Query: 61 FESDE 65
F +
Sbjct: 104 FWCEP 108
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal
reces hypercholesterolemia, ARH, cholesterol; 1.37A
{Rattus norvegicus}
Length = 137
Score = 76.8 bits (189), Expect = 4e-17
Identities = 21/115 (18%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 204 LKAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRF 263
+ + + +V L +S I++ ++ +++ + ++ ISY + A +
Sbjct: 33 VATAKASGKKLQKVTLKVSPRGIILTDSLTSQLIENVSIYRISYCTADKMHDKVFA---Y 89
Query: 264 VSQEADEPPKISRTPKMICHVFESD---EAQFIAQSIGQAFQVAYMEFLKANGIE 315
++Q + + CH F AQ + ++ QAF+VA+ EF + + +
Sbjct: 90 IAQS-------QQNESLECHAFLCTKRKVAQAVTLTVAQAFKVAF-EFWQVSLVP 136
Score = 39.5 bits (92), Expect = 4e-04
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 2 LTFNDRVHKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVF 61
+ D + +++ + ++ ISY + A +++Q + + CH F
Sbjct: 55 IILTDSLTSQLIENVSIYRISYCTADKMHDKVFA---YIAQS-------QQNESLECHAF 104
Query: 62 ESD 64
Sbjct: 105 LCT 107
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 73.9 bits (182), Expect = 1e-16
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
V K E +G+ + + ++A + G R G L++GD+I +NG+S+
Sbjct: 4 LVQFQKNTDEPMGITLKMNELNH----CIVARIMHGGMIHRQGTLHVGDEIREINGISVA 59
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVP 150
+ Q ++ + + +VP
Sbjct: 60 NQTVEQLQKMLREMRGS--ITFKIVP 83
Score = 68.1 bits (167), Expect = 1e-14
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+ V K E +G+ + + ++A + G R G L++GD+I +NG+S+
Sbjct: 3 RLVQFQKNTDEPMGITLKMNELNH----CIVARIMHGGMIHRQGTLHVGDEIREINGISV 58
Query: 409 VGLPLSTCQTYIK 421
+ Q ++
Sbjct: 59 ANQTVEQLQKMLR 71
Score = 65.4 bits (160), Expect = 1e-13
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
V K E +G+ + + ++A + G R G L++GD+I +NG+S+
Sbjct: 5 VQFQKNTDEPMGITLKMNELNH----CIVARIMHGGMIHRQGTLHVGDEIREINGISVAN 60
Query: 502 LPLSTCQTYIK 512
+ Q ++
Sbjct: 61 QTVEQLQKMLR 71
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 74.0 bits (182), Expect = 2e-16
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 61 FESDEVVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQ 114
++ +VV+ + + E G VI+ ESG +P I + A RC +L +GD+
Sbjct: 9 LQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVP-HKIGRIIDGSPADRCAKLKVGDR 67
Query: 115 IIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVP 150
I+AVNG S++ +P + IK++ V L ++P
Sbjct: 68 ILAVNGQSIINMPHADIVKLIKDAGL--SVTLRIIP 101
Score = 64.0 bits (156), Expect = 8e-13
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 349 KEVVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 402
+VV+ + + E G VI+ ESG +P I + A RC +L +GD+I+A
Sbjct: 12 SDVVIHRKENEGFGFVIISSLNRPESGSTITVP-HKIGRIIDGSPADRCAKLKVGDRILA 70
Query: 403 VNGVSLVGLPLSTCQTYIK 421
VNG S++ +P + IK
Sbjct: 71 VNGQSIINMPHADIVKLIK 89
Score = 62.8 bits (153), Expect = 2e-12
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 438 QETPVVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQI 491
Q + VV+ + + E G VI+ ESG +P I + A RC +L +GD+I
Sbjct: 10 QTSDVVIHRKENEGFGFVIISSLNRPESGSTITVP-HKIGRIIDGSPADRCAKLKVGDRI 68
Query: 492 IAVNGVSLVGLPLSTCQTYIK 512
+AVNG S++ +P + IK
Sbjct: 69 LAVNGQSIINMPHADIVKLIK 89
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 72.9 bits (179), Expect = 6e-16
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
V + KA+ LG + +V+I+ + GAA + G L+ GD+++ +NG+ +
Sbjct: 28 IVRIEKARDIPLGATVRNEM-----DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIR 82
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVP 150
G ++ + + + ++P
Sbjct: 83 GKDVNEVFDLLSDMHG--TLTFVLIP 106
Score = 65.5 bits (160), Expect = 2e-13
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
K V + KA+ LG + +V+I+ + GAA + G L+ GD+++ +NG+ +
Sbjct: 27 KIVRIEKARDIPLGATVRNEM-----DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEI 81
Query: 409 VGLPLSTCQTYIK 421
G ++ +
Sbjct: 82 RGKDVNEVFDLLS 94
Score = 64.4 bits (157), Expect = 6e-13
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
V + KA+ LG + +V+I+ + GAA + G L+ GD+++ +NG+ + G
Sbjct: 29 VRIEKARDIPLGATVRNEM-----DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRG 83
Query: 502 LPLSTCQTYIK 512
++ +
Sbjct: 84 KDVNEVFDLLS 94
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 72.5 bits (178), Expect = 9e-16
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
V + K G LG+ + + + I + PA R G L+ GD I++++G S+
Sbjct: 18 MVEIVKTPGSALGISLT-TTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSME 76
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVPCAP 153
L + + V+L ++P
Sbjct: 77 HCSLLEATKLLASISE--KVRLEILPVPQ 103
Score = 64.0 bits (156), Expect = 1e-12
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 350 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 409
V + K G LG+ + + + I + PA R G L+ GD I++++G S+
Sbjct: 18 MVEIVKTPGSALGISLT-TTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSME 76
Query: 410 GL 411
Sbjct: 77 HC 78
Score = 63.6 bits (155), Expect = 1e-12
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
V + K G LG+ + + + I + PA R G L+ GD I++++G S+
Sbjct: 19 VEIVKTPGSALGISLT-TTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEH 77
Query: 502 L 502
Sbjct: 78 C 78
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 69.7 bits (171), Expect = 7e-15
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 61 FESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 120
E V + K G+ LG+ + + G IA+L +L GD I NG
Sbjct: 1 LEKFNVDLMKKAGKELGLSLSPNEIG-----CTIADLIQGQYPEIDSKLQRGDIITKFNG 55
Query: 121 VSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
+L GLP C K + + V + V
Sbjct: 56 DALEGLPFQVCYALFKGANGK--VSMEVT 82
Score = 63.2 bits (154), Expect = 1e-12
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 350 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 409
V + K G+ LG+ + + G IA+L +L GD I NG +L
Sbjct: 5 NVDLMKKAGKELGLSLSPNEIG-----CTIADLIQGQYPEIDSKLQRGDIITKFNGDALE 59
Query: 410 GLPLSTCQTYIK 421
GLP C K
Sbjct: 60 GLPFQVCYALFK 71
Score = 61.6 bits (150), Expect = 5e-12
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 441 PVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 500
V + K G+ LG+ + + G IA+L +L GD I NG +L
Sbjct: 5 NVDLMKKAGKELGLSLSPNEIG-----CTIADLIQGQYPEIDSKLQRGDIITKFNGDALE 59
Query: 501 GLPLSTCQTYIK 512
GLP C K
Sbjct: 60 GLPFQVCYALFK 71
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 68.5 bits (168), Expect = 2e-14
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 59 HVFESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 118
+ E V + K G+ LG+ + + G IA+L +L GD I
Sbjct: 5 NSLEKFNVDLMKKAGKELGLSLSPNEIG-----CTIADLIQGQYPEIDSKLQRGDIITKF 59
Query: 119 NGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
NG +L GLP K + + V + V
Sbjct: 60 NGDALEGLPFQVSYALFKGANGK--VSMEVT 88
Score = 62.3 bits (152), Expect = 2e-12
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 350 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 409
V + K G+ LG+ + + G IA+L +L GD I NG +L
Sbjct: 11 NVDLMKKAGKELGLSLSPNEIG-----CTIADLIQGQYPEIDSKLQRGDIITKFNGDALE 65
Query: 410 GLPLSTCQTYIK 421
GLP K
Sbjct: 66 GLPFQVSYALFK 77
Score = 61.6 bits (150), Expect = 4e-12
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 438 QETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 497
++ V + K G+ LG+ + + G IA+L +L GD I NG
Sbjct: 8 EKFNVDLMKKAGKELGLSLSPNEIG-----CTIADLIQGQYPEIDSKLQRGDIITKFNGD 62
Query: 498 SLVGLPLSTCQTYIK 512
+L GLP K
Sbjct: 63 ALEGLPFQVSYALFK 77
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 68.6 bits (168), Expect = 3e-14
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 60 VFESDEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 116
+FE+ V + + G+ LG+ IV + + + ++ P AA G + + D+I+
Sbjct: 13 LFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIV 72
Query: 117 AVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDTKYQLGFSVQNG 175
AV+GV++ G ++N+ VV LT+V P + +G
Sbjct: 73 AVDGVNIQGFANHDVVEVLRNAGQ--VVHLTLVRRKTSSSTSPLEPPSDRGTVSGPSSG 129
Score = 61.3 bits (149), Expect = 1e-11
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 350 EVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 406
V + + G+ LG+ IV + + + ++ P AA G + + D+I+AV+GV
Sbjct: 18 NVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGV 77
Query: 407 SLVGLP 412
++ G
Sbjct: 78 NIQGFA 83
Score = 60.1 bits (146), Expect = 3e-11
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 442 VVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 498
V + + G+ LG+ IV + + + ++ P AA G + + D+I+AV+GV+
Sbjct: 19 VELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVN 78
Query: 499 LVGLP 503
+ G
Sbjct: 79 IQGFA 83
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 67.9 bits (166), Expect = 3e-14
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Query: 41 SQEADEPPKISRTPKMICHVFESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPA 100
I + +V++ K E LG+ I G +P ++I+ + P
Sbjct: 6 HHHHHSSGHIEGRHMENLYFQGIRKVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPG 63
Query: 101 GAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
A RCG L++GD I+AVNGV+L T + + ++ VV
Sbjct: 64 QPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRG--EIEFEVV 110
Score = 61.3 bits (149), Expect = 6e-12
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 428 PTSMFRLLTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNI 487
M L V++ K E LG+ I G +P ++I+ + P A RCG L++
Sbjct: 17 GRHMENLYFQGIRKVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHV 74
Query: 488 GDQIIAVNGVSLVGL 502
GD I+AVNGV+L
Sbjct: 75 GDAILAVNGVNLRDT 89
Score = 61.3 bits (149), Expect = 7e-12
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
++V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 29 RKVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 86
Query: 409 VGL 411
Sbjct: 87 RDT 89
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 67.9 bits (166), Expect = 4e-14
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
+V + K ++G+ I G P + I + AA G + GD+I VNG S+
Sbjct: 27 KVTLQKDAQNLIGISIG--GGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIK 84
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVPCAP 153
G I+ K + V +
Sbjct: 85 GKTKVEVAKMIQEVKGE--VTIHYNKLQY 111
Score = 64.0 bits (156), Expect = 9e-13
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 323 MDYQEVLNSQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANL 382
M + +S G E F + + +V + K ++G+ I G P + I +
Sbjct: 1 MHHHHHHSSGVDLGTENLYF-QSMVPGKVTLQKDAQNLIGISIG--GGAQYCPCLYIVQV 57
Query: 383 APAGAAARCGQLNIGDQIIAVNGVSLVGL 411
AA G + GD+I VNG S+ G
Sbjct: 58 FDNTPAALDGTVAAGDEITGVNGRSIKGK 86
Score = 60.5 bits (147), Expect = 1e-11
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
V + K ++G+ I G P + I + AA G + GD+I VNG S+ G
Sbjct: 28 VTLQKDAQNLIGISIG--GGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 85
Query: 502 L 502
Sbjct: 86 K 86
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 65.8 bits (161), Expect = 1e-13
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 65 EVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 120
V + K + G+ IV + + + I + P A CG+L +GD+I+++NG
Sbjct: 8 MVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNG 67
Query: 121 VSLVGLPLSTCQTYIKNSKNQTVVKLTVVP 150
+ IK + + ++L +
Sbjct: 68 KDVRNSTEQAVIDLIKEADFK--IELEIQT 95
Score = 60.8 bits (148), Expect = 6e-12
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 435 LTGQET-PVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGD 489
+ G+ V + K + G+ IV + + + I + P A CG+L +GD
Sbjct: 1 MAGELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGD 60
Query: 490 QIIAVNGVSLVGL 502
+I+++NG +
Sbjct: 61 RILSLNGKDVRNS 73
Score = 60.4 bits (147), Expect = 1e-11
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 350 EVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 405
V + K + G+ IV + + + I + P A CG+L +GD+I+++NG
Sbjct: 8 MVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNG 67
Query: 406 VSLVGL 411
+
Sbjct: 68 KDVRNS 73
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 65.5 bits (160), Expect = 1e-13
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
V + K GE LGV G +VIA + G A+ G L++GD I VNG V
Sbjct: 9 MVGIRKTAGEHLGVTFRVEG-----GELVIARILHGGMVAQQGLLHVGDIIKEVNGQP-V 62
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVPC 151
G Q ++N+ V L ++
Sbjct: 63 GSDPRALQELLRNASG--SVILKILSG 87
Score = 58.6 bits (142), Expect = 4e-11
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+ V + K GE LGV G +VIA + G A+ G L++GD I VNG
Sbjct: 8 RMVGIRKTAGEHLGVTFRVEG-----GELVIARILHGGMVAQQGLLHVGDIIKEVNGQP- 61
Query: 409 VGLPLSTCQTYIK 421
VG Q ++
Sbjct: 62 VGSDPRALQELLR 74
Score = 57.1 bits (138), Expect = 1e-10
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
V + K GE LGV G +VIA + G A+ G L++GD I VNG VG
Sbjct: 10 VGIRKTAGEHLGVTFRVEG-----GELVIARILHGGMVAQQGLLHVGDIIKEVNGQP-VG 63
Query: 502 LPLSTCQTYIK 512
Q ++
Sbjct: 64 SDPRALQELLR 74
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 65.8 bits (161), Expect = 2e-13
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
+V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 12 KVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 69
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVP 150
T + + ++ VV
Sbjct: 70 DTKHKEAVTILSQQRG--EIEFEVVY 93
Score = 60.1 bits (146), Expect = 1e-11
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 436 TGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 495
G V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVN
Sbjct: 7 VGPIRKVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVN 64
Query: 496 GVSLVGL 502
GV+L
Sbjct: 65 GVNLRDT 71
Score = 59.7 bits (145), Expect = 2e-11
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
++V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 11 RKVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 68
Query: 409 VGL 411
Sbjct: 69 RDT 71
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 66.2 bits (162), Expect = 2e-13
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 65 EVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
V + K + LG+ I S G + + IA + P G AA+ +L +GD+I+ + G
Sbjct: 27 TVEMKKGPTDSLGISIAGGVGSPLGDV--PIFIAMMHPTGVAAQTQKLRVGDRIVTICGT 84
Query: 122 SLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKI 159
S G+ + +KN+ +++ VV V E +
Sbjct: 85 STEGMTHTQAVNLLKNASG--SIEMQVVAGGDVSETSV 120
Score = 60.1 bits (146), Expect = 2e-11
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 349 KEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 405
+ V + K + LG+ I S G + + IA + P G AA+ +L +GD+I+ + G
Sbjct: 26 RTVEMKKGPTDSLGISIAGGVGSPLGDV--PIFIAMMHPTGVAAQTQKLRVGDRIVTICG 83
Query: 406 VSLVGL 411
S G+
Sbjct: 84 TSTEGM 89
Score = 58.9 bits (143), Expect = 6e-11
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 442 VVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 498
V + K + LG+ I S G + + IA + P G AA+ +L +GD+I+ + G S
Sbjct: 28 VEMKKGPTDSLGISIAGGVGSPLGDV--PIFIAMMHPTGVAAQTQKLRVGDRIVTICGTS 85
Query: 499 LVGL 502
G+
Sbjct: 86 TEGM 89
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 66.0 bits (161), Expect = 2e-13
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 54 PKMICHVF---ESDEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCG 107
++I + + VP+ G +LG+ +V + G + I + A G
Sbjct: 25 DRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRL--CAFITKVKKGSLADTVG 82
Query: 108 QLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
L GD+++ NG L G I SK + V+L V
Sbjct: 83 HLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVV 123
Score = 62.9 bits (153), Expect = 3e-12
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 349 KEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 405
K+ VP+ G +LG+ +V + G + I + A G L GD+++ NG
Sbjct: 38 KDGSVPRDSGAMLGLKVVGGKMTESGRL--CAFITKVKKGSLADTVGHLRPGDEVLEWNG 95
Query: 406 VSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQETP 441
L G T + I++++ P L+ + P
Sbjct: 96 RLLQGA---TFEEVYNIILESKPEPQVELVVSRSGP 128
Score = 58.7 bits (142), Expect = 8e-11
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 433 RLLTGQETPVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGD 489
LL + VP+ G +LG+ +V + G + I + A G L GD
Sbjct: 31 ILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRL--CAFITKVKKGSLADTVGHLRPGD 88
Query: 490 QIIAVNGVSLVGL 502
+++ NG L G
Sbjct: 89 EVLEWNGRLLQGA 101
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 65.3 bits (159), Expect = 3e-13
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 23/138 (16%)
Query: 51 SRTPKMICHVFESDEVVVPKAKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQ 108
S + H E+ EVV+ G+ + S + + + +I+ + A RCG
Sbjct: 5 SSGAGQVVHT-ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGV 63
Query: 109 LNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDTKYQL 168
L IGD+++A+NG+ +++S + V L +
Sbjct: 64 LQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI-------------------- 103
Query: 169 GFSVQNGVAPEGETQPST 186
F V V P + PS+
Sbjct: 104 EFDVAESVIPSSGSGPSS 121
Score = 57.6 bits (139), Expect = 2e-10
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 433 RLLTGQETPVVVPKAKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQ 490
+++ + T VV+ G+ + S + + + +I+ + A RCG L IGD+
Sbjct: 10 QVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDR 69
Query: 491 IIAVNGVSLVGLPLSTCQTYIK 512
++A+NG+ ++
Sbjct: 70 VMAINGIPTEDSTFEEANQLLR 91
Score = 56.8 bits (137), Expect = 3e-10
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 348 QKEVVVPKAKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNG 405
EVV+ G+ + S + + + +I+ + A RCG L IGD+++A+NG
Sbjct: 16 TTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 75
Query: 406 VSLVGLPLSTCQTYIK 421
+ ++
Sbjct: 76 IPTEDSTFEEANQLLR 91
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 65.3 bits (159), Expect = 4e-13
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 41 SQEADEPPKISRTPKMICHVFESDEVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAP 99
S +E ++S+ + + + + + G LG+V++++G P + I++L
Sbjct: 6 SGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLG--LGLVVIQNG-----PYLQISHLIN 58
Query: 100 AGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
GAAA G L GD +I+V +++G L ++N TV+++
Sbjct: 59 KGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKA 107
Score = 55.3 bits (133), Expect = 1e-09
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 361 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI 420
LG+V++++G P + I++L GAAA G L GD +I+V +++G L + ++
Sbjct: 40 LGLVVIQNG-----PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTL---REFL 91
Query: 421 KILMKTMPTSMFRLL 435
K+L ++ ++
Sbjct: 92 KLLQNITIGTVLQIK 106
Score = 54.5 bits (131), Expect = 3e-09
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 425 KTMPTSMFRLLTGQETPVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCG 483
K + ++ + G + LG+V++++G P + I++L GAAA G
Sbjct: 12 KEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNG-----PYLQISHLINKGAAASDG 66
Query: 484 QLNIGDQIIAVNGVSLVGLPLS 505
L GD +I+V +++G L
Sbjct: 67 ILQPGDVLISVGHANVLGYTLR 88
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 63.7 bits (155), Expect = 1e-12
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
V + K K LG ++ E P V+I++L GAA + G + GD I+AVN LV
Sbjct: 4 SVRLFKRKVGGLGFLVKE---RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLV 60
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVP 150
L + ++ ++T V L +
Sbjct: 61 DLSYDSALEVLRGIASETHVVLILRG 86
Score = 59.0 bits (143), Expect = 4e-11
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 350 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 409
V + K K LG ++ E P V+I++L GAA + G + GD I+AVN LV
Sbjct: 4 SVRLFKRKVGGLGFLVKE---RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLV 60
Query: 410 GL 411
L
Sbjct: 61 DL 62
Score = 57.9 bits (140), Expect = 1e-10
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
V + K K LG ++ E P V+I++L GAA + G + GD I+AVN LV
Sbjct: 5 VRLFKRKVGGLGFLVKE---RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD 61
Query: 502 L 502
L
Sbjct: 62 L 62
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 63.1 bits (154), Expect = 1e-12
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 61 FESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 120
++ +V + + + G I+ G P ++I + G+A R G+L+ GD+++ V+G
Sbjct: 8 YKELDVHLRRMESG-FGFRIL-GGDEPGQP-ILIGAVIAMGSADRDGRLHPGDELVYVDG 64
Query: 121 VSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ + G + ++ V LTV
Sbjct: 65 IPVAGKTHRYVIDLMHHAARNGQVNLTV 92
Score = 53.5 bits (129), Expect = 3e-09
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 438 QETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 497
+E V + + + G I+ G P ++I + G+A R G+L+ GD+++ V+G+
Sbjct: 9 KELDVHLRRMESG-FGFRIL-GGDEPGQP-ILIGAVIAMGSADRDGRLHPGDELVYVDGI 65
Query: 498 SLVGLP 503
+ G
Sbjct: 66 PVAGKT 71
Score = 53.1 bits (128), Expect = 4e-09
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 350 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 409
+V + + + G I+ G P ++I + G+A R G+L+ GD+++ V+G+ +
Sbjct: 12 DVHLRRMESG-FGFRIL-GGDEPGQP-ILIGAVIAMGSADRDGRLHPGDELVYVDGIPVA 68
Query: 410 GLP 412
G
Sbjct: 69 GKT 71
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 63.2 bits (154), Expect = 2e-12
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 7/116 (6%)
Query: 41 SQEADEPPKISRTPKMICHVFESDEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANL 97
T + V + K GE LG+ + + + + ++
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDL--PIYVISV 60
Query: 98 APAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAP 153
P G +R G++ GD ++ V+GV L + S +K + + + L +
Sbjct: 61 EPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSS--SIVLKALEVKE 114
Score = 62.0 bits (151), Expect = 5e-12
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 428 PTSMFRLLTGQETPVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQ 484
T + E V + K GE LG+ + + + + ++ P G +R G+
Sbjct: 14 GTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDL--PIYVISVEPGGVISRDGR 71
Query: 485 LNIGDQIIAVNGVSLVGL 502
+ GD ++ V+GV L +
Sbjct: 72 IKTGDILLNVDGVELTEV 89
Score = 61.6 bits (150), Expect = 6e-12
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 323 MDYQEVLNSQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVI 379
M + +S G E F +K V + K GE LG+ + + + +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMH-EKVVNIQKDPGESLGMTVAGGASHREWDL--PIYV 57
Query: 380 ANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
++ P G +R G++ GD ++ V+GV L +
Sbjct: 58 ISVEPGGVISRDGRIKTGDILLNVDGVELTEV 89
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 63.2 bits (154), Expect = 2e-12
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 65 EVVVPKAKGEILGVVIV---ESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIA 117
E+ + KA GE LG+ I G+ + I+ ++P GAA R G+L +G +++
Sbjct: 12 ELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLE 71
Query: 118 VNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
VN SL+GL +++ + + + V
Sbjct: 72 VNQQSLLGLTHGEAVQLLRSVGD--TLTVLVC 101
Score = 58.9 bits (143), Expect = 4e-11
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 349 KEVVVPKAKGEILGVVIV---ESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQII 401
+E+ + KA GE LG+ I G+ + I+ ++P GAA R G+L +G +++
Sbjct: 11 RELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLL 70
Query: 402 AVNGVSLVGL 411
VN SL+GL
Sbjct: 71 EVNQQSLLGL 80
Score = 57.0 bits (138), Expect = 2e-10
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 442 VVVPKAKGEILGVVIV---ESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAV 494
+ + KA GE LG+ I G+ + I+ ++P GAA R G+L +G +++ V
Sbjct: 13 LCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEV 72
Query: 495 NGVSLVGL 502
N SL+GL
Sbjct: 73 NQQSLLGL 80
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 62.4 bits (152), Expect = 3e-12
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 61 FESDEVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 116
F V + + K LG+ I + + + +L P AAA G++ D+I+
Sbjct: 11 FSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKIL 70
Query: 117 AVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVE 156
V+ V++ G+ S ++N+ N V+L ++ P++E
Sbjct: 71 RVDDVNVQGMAQSDVVEVLRNAGN--PVRLLLIRRLPLLE 108
Score = 55.0 bits (133), Expect = 8e-10
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 350 EVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 405
V + + K LG+ I + + + +L P AAA G++ D+I+ V+
Sbjct: 15 SVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDD 74
Query: 406 VSLVGL 411
V++ G+
Sbjct: 75 VNVQGM 80
Score = 54.3 bits (131), Expect = 2e-09
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 441 PVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 496
V + + K LG+ I + + + +L P AAA G++ D+I+ V+
Sbjct: 15 SVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDD 74
Query: 497 VSLVGL 502
V++ G+
Sbjct: 75 VNVQGM 80
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 62.0 bits (151), Expect = 3e-12
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
V + + G LG+ I G ++I++L G A R G ++IGD+I+A+N SL
Sbjct: 8 TVELKR-YGGPLGITIS--GTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLK 64
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVP 150
G PLS ++ + V L +
Sbjct: 65 GKPLSEAIHLLQMAGE--TVTLKIKK 88
Score = 57.3 bits (139), Expect = 1e-10
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 436 TGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 495
+G V K G LG+ I G ++I++L G A R G ++IGD+I+A+N
Sbjct: 2 SGAIIYTVELKRYGGPLGITIS--GTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAIN 59
Query: 496 GVSLVGLPLS 505
SL G PLS
Sbjct: 60 SSSLKGKPLS 69
Score = 55.8 bits (135), Expect = 4e-10
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
V + + G LG+ I G ++I++L G A R G ++IGD+I+A+N SL
Sbjct: 7 YTVELKR-YGGPLGITIS--GTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSL 63
Query: 409 VGLPLSTCQTYIKILMKTMPTSMFRLLTGQETP 441
G PLS I +L T ++ +
Sbjct: 64 KGKPLSEA---IHLLQMAGETVTLKIKKQTDAQ 93
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 61.7 bits (150), Expect = 4e-12
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 436 TGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 495
+G +V K LG+ I G + P I + G+A CGQL +G I+ VN
Sbjct: 3 SGSSGTLVRVKKSAATLGIAIE-GGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVN 61
Query: 496 GVSLVGL 502
G++L G
Sbjct: 62 GLTLRGK 68
Score = 60.1 bits (146), Expect = 2e-11
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 66 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 125
+V K LG+ I G + P I + G+A CGQL +G I+ VNG++L G
Sbjct: 9 LVRVKKSAATLGIAIE-GGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRG 67
Query: 126 LPLSTCQTYIKNS---KNQTVVKLTVVPCAP 153
I + K++ + V
Sbjct: 68 KEHREAARIIAEAFKTKDRDYIDFLVTEFNS 98
Score = 59.0 bits (143), Expect = 3e-11
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 348 QKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 407
+V K LG+ I G + P I + G+A CGQL +G I+ VNG++
Sbjct: 6 SGTLVRVKKSAATLGIAIE-GGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLT 64
Query: 408 LVGL 411
L G
Sbjct: 65 LRGK 68
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 62.6 bits (152), Expect = 4e-12
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
V + K K LG ++ E P V+I++L GAA + G + GD I+AVN LV
Sbjct: 11 SVRLFKRKVGGLGFLVKE---RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLV 67
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVP 150
L + ++ ++T V L +
Sbjct: 68 DLSYDSALEVLRGIASETHVVLILRG 93
Score = 57.6 bits (139), Expect = 2e-10
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 350 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 409
V + K K LG ++ E P V+I++L GAA + G + GD I+AVN LV
Sbjct: 11 SVRLFKRKVGGLGFLVKE---RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLV 67
Query: 410 GL 411
L
Sbjct: 68 DL 69
Score = 56.4 bits (136), Expect = 5e-10
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
V + K K LG ++ E P V+I++L GAA + G + GD I+AVN LV
Sbjct: 12 VRLFKRKVGGLGFLVKE---RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD 68
Query: 502 L 502
L
Sbjct: 69 L 69
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 61.1 bits (149), Expect = 4e-12
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
V V KA LG+ I G + +P ++I+ + AA + L +GD I++VNG L
Sbjct: 7 RVTVRKADAGGLGISIK-GGRENKMP-ILISKIFKGLAADQTEALFVGDAILSVNGEDLS 64
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTV 148
+K + V L V
Sbjct: 65 SATHDEAVQALKKTGK--EVVLEV 86
Score = 58.4 bits (142), Expect = 3e-11
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 436 TGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 495
+ Q V V KA LG+ I G + +P ++I+ + AA + L +GD I++VN
Sbjct: 2 SLQRRRVTVRKADAGGLGISIK-GGRENKMP-ILISKIFKGLAADQTEALFVGDAILSVN 59
Query: 496 GVSLVGL 502
G L
Sbjct: 60 GEDLSSA 66
Score = 57.7 bits (140), Expect = 7e-11
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 348 QKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 407
++ V V KA LG+ I G + +P ++I+ + AA + L +GD I++VNG
Sbjct: 5 RRRVTVRKADAGGLGISIK-GGRENKMP-ILISKIFKGLAADQTEALFVGDAILSVNGED 62
Query: 408 LVGL 411
L
Sbjct: 63 LSSA 66
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 62.1 bits (151), Expect = 4e-12
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 65 EVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 117
V + + + LG+ IV G ++ + I ++ A + G L GD+I+
Sbjct: 27 RVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVE 86
Query: 118 VNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
V+G+ L I+ + N V V
Sbjct: 87 VDGMDLRDASHEQAVEAIRKAGN--PVVFMV 115
Score = 60.5 bits (147), Expect = 2e-11
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 427 MPTSMFRLLTGQETPVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAA 479
+ T + Q V + + + LG+ IV G ++ + I ++ A
Sbjct: 13 LGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPA 72
Query: 480 ARCGQLNIGDQIIAVNGVSLVGL 502
+ G L GD+I+ V+G+ L
Sbjct: 73 GKNGTLKPGDRIVEVDGMDLRDA 95
Score = 59.4 bits (144), Expect = 4e-11
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 349 KEVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 401
+ V + + + LG+ IV G ++ + I ++ A + G L GD+I+
Sbjct: 26 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIV 85
Query: 402 AVNGVSLVGL 411
V+G+ L
Sbjct: 86 EVDGMDLRDA 95
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 61.7 bits (150), Expect = 6e-12
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 65 EVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
+ G LG+ IV E S IA + P G+A + G+L G Q++ NG+
Sbjct: 21 DSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGI 80
Query: 122 SLVGLPLSTCQTYIKNSKNQTVVKLTV 148
L Q+ I ++ V
Sbjct: 81 PLTSKTYEEVQSIISQQSG--EAEICV 105
Score = 60.2 bits (146), Expect = 2e-11
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 343 AKKELQKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQ 399
A+ ++ ++ G LG+ IV E S IA + P G+A + G+L G Q
Sbjct: 14 ARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQ 73
Query: 400 IIAVNGVSLVGL 411
++ NG+ L
Sbjct: 74 VLEWNGIPLTSK 85
Score = 55.9 bits (135), Expect = 6e-10
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 442 VVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 498
G LG+ IV E S IA + P G+A + G+L G Q++ NG+
Sbjct: 22 SKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIP 81
Query: 499 LVGL 502
L
Sbjct: 82 LTSK 85
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 61.1 bits (149), Expect = 6e-12
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 65 EVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
EV + K +G G VI P VVI ++ P G A R G + GD++++V+G+
Sbjct: 6 EVTLHK-EGNTFGFVIRGGAHDDRNKSRP-VVITSVRPGGPADREGTIKPGDRLLSVDGI 63
Query: 122 SLVGLPLSTCQTYIKNSKNQTVVKLTV 148
L+G + + +K + L +
Sbjct: 64 RLLGTTHAEAMSILKQCGQE--AALLI 88
Score = 56.5 bits (137), Expect = 2e-10
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 347 LQKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 403
++ V +G G VI P VVI ++ P G A R G + GD++++V
Sbjct: 2 MRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRP-VVITSVRPGGPADREGTIKPGDRLLSV 60
Query: 404 NGVSLVGL 411
+G+ L+G
Sbjct: 61 DGIRLLGT 68
Score = 56.5 bits (137), Expect = 2e-10
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 439 ETPVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 495
T V +G G VI P VVI ++ P G A R G + GD++++V+
Sbjct: 3 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRP-VVITSVRPGGPADREGTIKPGDRLLSVD 61
Query: 496 GVSLVGL 502
G+ L+G
Sbjct: 62 GIRLLGT 68
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 61.2 bits (149), Expect = 6e-12
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 65 EVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 117
V + + + LG+ IV G ++ + I ++ A + G L GD+I+
Sbjct: 7 RVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVE 66
Query: 118 VNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
V+G+ L I+ + N V V
Sbjct: 67 VDGMDLRDASHEQAVEAIRKAGN--PVVFMV 95
Score = 58.5 bits (142), Expect = 5e-11
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 348 QKEVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQI 400
+ V + + + LG+ IV G ++ + I ++ A + G L GD+I
Sbjct: 5 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 64
Query: 401 IAVNGVSLVGL 411
+ V+G+ L
Sbjct: 65 VEVDGMDLRDA 75
Score = 57.8 bits (140), Expect = 9e-11
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 436 TGQETPVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLNIG 488
+ Q V + + + LG+ IV G ++ + I ++ A + G L G
Sbjct: 2 SMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPG 61
Query: 489 DQIIAVNGVSLVGL 502
D+I+ V+G+ L
Sbjct: 62 DRIVEVDGMDLRDA 75
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 60.4 bits (147), Expect = 9e-12
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
++ + + K G I+ G P + I ++ P GAA G+L GD++I+V+G ++
Sbjct: 5 DIFLWR-KETGFGFRIL-GGNEPGEP-IYIGHIVPLGAADTDGRLRSGDELISVDGTPVI 61
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTV 148
G ++ + Q V LTV
Sbjct: 62 GKSHQLVVQLMQQAAKQGHVNLTV 85
Score = 53.8 bits (130), Expect = 2e-09
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 438 QETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 497
E + + + K G I+ G P + I ++ P GAA G+L GD++I+V+G
Sbjct: 2 MEQDIFLWR-KETGFGFRIL-GGNEPGEP-IYIGHIVPLGAADTDGRLRSGDELISVDGT 58
Query: 498 SLVGL 502
++G
Sbjct: 59 PVIGK 63
Score = 53.0 bits (128), Expect = 3e-09
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+++ + + K G I+ G P + I ++ P GAA G+L GD++I+V+G +
Sbjct: 4 QDIFLWR-KETGFGFRIL-GGNEPGEP-IYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60
Query: 409 VGL 411
+G
Sbjct: 61 IGK 63
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 60.1 bits (146), Expect = 1e-11
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 76 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI 135
LG I + +++A + GAA R G +++GD++ VNG+ + +
Sbjct: 17 LGATIKK---DEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQIL 73
Query: 136 KNSKNQTVVKLTVVP 150
S+ + ++P
Sbjct: 74 AQSQG--AITFKIIP 86
Score = 53.5 bits (129), Expect = 3e-09
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 437 GQETPVVVPKAKG-EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 495
G ++ ++ K E LG I + +++A + GAA R G +++GD++ VN
Sbjct: 1 GSDSVKIIRLVKNREPLGATIKK---DEQTGAIIVARIMRGGAADRSGLIHVGDELREVN 57
Query: 496 GVSLVGLPLSTCQTYIK 512
G+ + +
Sbjct: 58 GIPVEDKRPEEIIQILA 74
Score = 52.3 bits (126), Expect = 5e-09
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
K + + K E LG I + +++A + GAA R G +++GD++ VNG+ +
Sbjct: 6 KIIRLVK-NREPLGATIKK---DEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPV 61
Query: 409 VGLPLSTCQTYIK 421
+
Sbjct: 62 EDKRPEEIIQILA 74
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 61.3 bits (149), Expect = 1e-11
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 69 PKAKGEILGVVIV--ESGWG-------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 119
+ KG+ + + G+G + I +L G AA G++ GD I++VN
Sbjct: 13 SELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVN 72
Query: 120 GVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
++G + ++ V L +
Sbjct: 73 DTCVLGHTHAQVVKIFQSIPIGASVDLEL 101
Score = 54.0 bits (130), Expect = 3e-09
Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 354 PKAKGEILGVVIV--ESGWG-------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 404
+ KG+ + + G+G + I +L G AA G++ GD I++VN
Sbjct: 13 SELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVN 72
Query: 405 GVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQETPV 442
++G T +KI + L + P+
Sbjct: 73 DTCVLGH---THAQVVKIFQSIPIGASVDLELCRGYPL 107
Score = 54.0 bits (130), Expect = 4e-09
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 445 PKAKGEILGVVIV--ESGWG-------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 495
+ KG+ + + G+G + I +L G AA G++ GD I++VN
Sbjct: 13 SELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVN 72
Query: 496 GVSLVGL 502
++G
Sbjct: 73 DTCVLGH 79
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.6 bits (162), Expect = 1e-11
Identities = 71/422 (16%), Positives = 126/422 (29%), Gaps = 133/422 (31%)
Query: 161 RPDTKYQLGFSVQNGVAPEGETQPSTEVDLFISTEK-----------IMVLNTDLKAPEG 209
RP ++ +G S E L + T +L +
Sbjct: 7 RP-------LTLSHG---------SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA 50
Query: 210 ETQPSTEVDL------FISTEK--------IMVLNTDLKE----IMMD---HAL-RTISY 247
+ +P+T +L ++S+ VLN L E + HAL +
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 248 IADIGDLVVLMARRRFVS--QEADEPPKISRTPKMICHVFESDEAQFIAQSIGQAFQVAY 305
D + + +++ A P + V AQ +A GQ
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV-GEGNAQLVAIFGGQ------ 163
Query: 306 MEFLKANG-IEDHSFVKEM-----DYQEVLNSQEIF---GDELQMFAKKELQKEVVVPKA 356
G +D + +E+ Y ++ ++ + L + L E V +
Sbjct: 164 -------GNTDD--YFEELRDLYQTYHVLV--GDLIKFSAETLSELIRTTLDAEKVFTQ- 211
Query: 357 KGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 416
G+ I+E W L + P + +S + +
Sbjct: 212 -----GLNILE--W---LEN---PSNTP------------DKDYLLSIPISCPLIGVIQL 246
Query: 417 QTYIKILMKTM---PTSMFRLLTGQETPVVVPKAKGEILGVVIVESG-WGSMLPTV--VI 470
Y+ + K + P + L G ++G + V I E+ W S +V I
Sbjct: 247 AHYV-VTAKLLGFTPGELRSYLKG-----ATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 471 ANLAPAGAAARC----GQLNIGDQIIA---VNG-------VSLVGLPLSTCQTYI-KVNH 515
L G RC ++ I+ N +S+ L Q Y+ K N
Sbjct: 301 TVLFFIGV--RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 516 HL 517
HL
Sbjct: 359 HL 360
Score = 49.3 bits (117), Expect = 3e-06
Identities = 58/289 (20%), Positives = 86/289 (29%), Gaps = 107/289 (37%)
Query: 15 DHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDEVVVPKAKGE 74
+ I+ + IG R EA P S P ++ D +
Sbjct: 294 VSVRKAITVLFFIG------VR----CYEA--YPNTSLPPSIL-----EDSL-------- 328
Query: 75 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLN----IGDQI-IA-VNG----V--- 121
E+ G P + I+NL + N G Q+ I+ VNG V
Sbjct: 329 -------ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Query: 122 ---SLVGL---------PLSTCQTYIKNSKNQTVVK---LTV-VPC-----APVVEVKIK 160
SL GL P Q+ I S+ + L V P P + I
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD-LIN 440
Query: 161 RPDTKYQLGFSVQNGVAPEGETQPSTEVDLFISTEKIMVLNT----DLKAPEGETQPSTE 216
+ K + F+ + D+ +I V +T DL+ G
Sbjct: 441 KDLVKNNVSFNAK---------------DI-----QIPVYDTFDGSDLRVLSGSISERI- 479
Query: 217 VDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIG-----DLVVLMAR 260
VD I+ L + A ++I D G L VL R
Sbjct: 480 VDC------IIRLPVKWETTTQFKA----THILDFGPGGASGLGVLTHR 518
Score = 49.3 bits (117), Expect = 3e-06
Identities = 60/313 (19%), Positives = 89/313 (28%), Gaps = 114/313 (36%)
Query: 160 KRPD--TKYQLGFSVQNGVAPEGETQPSTEVDLFISTEKIMVLNTDLKAPEGETQPSTEV 217
R D K GFS+ + V P F EK + + A ET
Sbjct: 1647 NRADNHFKDTYGFSILDIV----INNPVNLTIHF-GGEKGKRIRENYSAMIFETIV---- 1697
Query: 218 DLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRT 277
D + TEKI KEI + + ++ ++ G L S T
Sbjct: 1698 DGKLKTEKI------FKEI--NEHSTSYTFRSEKGLL--------------------SAT 1729
Query: 278 PKMICHVFESDEAQFIAQ-SIGQAFQVAYMEFLKANGIED-------HS----------- 318
QF Q ++ + A E LK+ G+ HS
Sbjct: 1730 -------------QF-TQPALT-LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLA 1774
Query: 319 ----F------VKE--MDYQEVLNSQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVI- 365
V M Q + E+ M A + V E L V+
Sbjct: 1775 DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA---INPGRVAASFSQEALQYVVE 1831
Query: 366 ---VESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL-PLSTCQTYIK 421
+GW V I N N+ +Q G L L ++ +IK
Sbjct: 1832 RVGKRTGW-----LVEIVN------------YNVENQQYVAAG-DLRALDTVTNVLNFIK 1873
Query: 422 ---ILMKTMPTSM 431
I + + S+
Sbjct: 1874 LQKIDIIELQKSL 1886
Score = 35.0 bits (80), Expect = 0.077
Identities = 36/207 (17%), Positives = 72/207 (34%), Gaps = 60/207 (28%)
Query: 6 DRVHKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE 65
+++ KEI + + ++ ++ G L + +F +Q P ++ K +S
Sbjct: 1704 EKIFKEI--NEHSTSYTFRSEKGLL----SATQF-TQ-----PALTLMEKAAFEDLKSKG 1751
Query: 66 VVVPKAK------GEI--L----GVVIVESGWGSMLPTV-----VIANLAPAGAAARCGQ 108
++ A GE L V+ +ES + V + P G+
Sbjct: 1752 LIPADATFAGHSLGEYAALASLADVMSIESL----VEVVFYRGMTMQVAVPRDEL---GR 1804
Query: 109 LNIGDQIIAVNGVSLV-GLPLSTCQTYIK---------------NSKNQTVV---KLTVV 149
N G +IA+N + Q ++ N +NQ V L +
Sbjct: 1805 SNYG--MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL 1862
Query: 150 PCAPVV--EVKIKRPDT-KYQLGFSVQ 173
V +K+++ D + Q S++
Sbjct: 1863 DTVTNVLNFIKLQKIDIIELQKSLSLE 1889
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 60.9 bits (148), Expect = 1e-11
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 62 ESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
+V + K ++G+ I G + I + AA G + GD+I VNG
Sbjct: 19 VPGKVTLQKDAQNLIGISIG-GGAQYCPC-LYIVQVFDNTPAALDGTVAAGDEITGVNGR 76
Query: 122 SLVGLPLSTCQTYIKNSKNQTVVKLTV 148
S+ G I+ K V +
Sbjct: 77 SIKGKTKVEVAKMIQEVKG--EVTIHY 101
Score = 56.3 bits (136), Expect = 5e-10
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+V + K ++G+ I G + I + AA G + GD+I VNG S+
Sbjct: 21 GKVTLQKDAQNLIGISIG-GGAQYCPC-LYIVQVFDNTPAALDGTVAAGDEITGVNGRSI 78
Query: 409 VGL 411
G
Sbjct: 79 KGK 81
Score = 55.9 bits (135), Expect = 8e-10
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 435 LTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 494
+ V + K ++G+ I G + I + AA G + GD+I V
Sbjct: 16 IPTVPGKVTLQKDAQNLIGISIG-GGAQYCPC-LYIVQVFDNTPAALDGTVAAGDEITGV 73
Query: 495 NGVSLVGL 502
NG S+ G
Sbjct: 74 NGRSIKGK 81
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 60.0 bits (146), Expect = 1e-11
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 60 VFESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 119
+ ++ + + K G+ LG+ IV G V ++++ G A G+L GDQI+ VN
Sbjct: 2 MSDTLTIGLQKKPGKGLGLSIV--G-KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVN 58
Query: 120 GVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
G + +K S V L V
Sbjct: 59 GEDVRNATQEAVAALLKCSLG--TVTLEV 85
Score = 55.7 bits (135), Expect = 4e-10
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 350 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 409
+ + K G+ LG+ IV G V ++++ G A G+L GDQI+ VNG +
Sbjct: 7 TIGLQKKPGKGLGLSIV--G-KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVR 63
Query: 410 GL 411
Sbjct: 64 NA 65
Score = 54.6 bits (132), Expect = 9e-10
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ + K G+ LG+ IV G V ++++ G A G+L GDQI+ VNG +
Sbjct: 8 IGLQKKPGKGLGLSIV--G-KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRN 64
Query: 502 L 502
Sbjct: 65 A 65
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 60.2 bits (146), Expect = 2e-11
Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 64 DEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 123
++ K +G LG + G + + + P G A++ G + G++++++NG SL
Sbjct: 17 HVTILHKEEGAGLGFSLA-GGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSL 75
Query: 124 VGLPLSTCQTYIKNSKNQTVVKLTVVPCAP 153
G ++ ++ + P
Sbjct: 76 KGTTHHDALAILRQAREPRQAVIVTRKLTP 105
Score = 59.0 bits (143), Expect = 6e-11
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 344 KKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 403
+ + ++ K +G LG + G + + + P G A++ G + G++++++
Sbjct: 12 QLDGIHVTILHKEEGAGLGFSLA-GGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSI 70
Query: 404 NGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQETPVVVPKAK 448
NG SL G T + IL + ++T + TP +P
Sbjct: 71 NGKSLKGT---THHDALAILRQAREPRQAVIVTRKLTPEAMPDLN 112
Score = 56.3 bits (136), Expect = 4e-10
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
++ K +G LG + G + + + P G A++ G + G++++++NG SL G
Sbjct: 19 TILHKEEGAGLGFSLA-GGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKG 77
Query: 502 L 502
Sbjct: 78 T 78
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 59.6 bits (145), Expect = 2e-11
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 437 GQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 496
G ET + + K + LG+ IV G ++L ++I + GAA + G+L GDQI+ VNG
Sbjct: 3 GCETTIEISKGRTG-LGLSIV-GGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNG 60
Query: 497 VSLVGLP 503
+ L
Sbjct: 61 IDLRKAT 67
Score = 58.5 bits (142), Expect = 5e-11
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
+ + K + LG+ IV G ++L ++I + GAA + G+L GDQI+ VNG+ L
Sbjct: 7 TIEISKGRTG-LGLSIV-GGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLR 64
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTV 148
++ + V+LT+
Sbjct: 65 KATHDEAINVLRQTPQ--RVRLTL 86
Score = 54.6 bits (132), Expect = 1e-09
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 350 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 409
+ + K + LG+ IV G ++L ++I + GAA + G+L GDQI+ VNG+ L
Sbjct: 7 TIEISKGRTG-LGLSIV-GGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLR 64
Query: 410 GLP 412
Sbjct: 65 KAT 67
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 59.7 bits (145), Expect = 2e-11
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ + LA G A R G++ IGD+I+ +NG + + S IKN V+L +
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGR--RVRLFL 105
Score = 53.1 bits (128), Expect = 6e-09
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 421
+ + LA G A R G++ IGD+I+ +NG + + S IK
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIK 95
Score = 53.1 bits (128), Expect = 6e-09
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+ + LA G A R G++ IGD+I+ +NG + + S IK
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIK 95
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 59.7 bits (145), Expect = 2e-11
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 58 CHVFESDEVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 116
C + E+++ +KG LG+ IV G + L +VI + GAAAR G+L GDQI+
Sbjct: 11 CPIVPGQEMIIEISKGRSGLGLSIV-GGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQIL 69
Query: 117 AVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
VNGV L T ++ + V+L V
Sbjct: 70 EVNGVDLRNSSHEEAITALRQTPQ--KVRLVV 99
Score = 58.6 bits (142), Expect = 7e-11
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 434 LLTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 493
++ GQE + + K + LG+ IV G + L +VI + GAAAR G+L GDQI+
Sbjct: 13 IVPGQEMIIEISKGRSG-LGLSIV-GGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILE 70
Query: 494 VNGVSLVGLP 503
VNGV L
Sbjct: 71 VNGVDLRNSS 80
Score = 54.7 bits (132), Expect = 1e-09
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 349 KEVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 407
+E+++ +KG LG+ IV G + L +VI + GAAAR G+L GDQI+ VNGV
Sbjct: 17 QEMIIEISKGRSGLGLSIV-GGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVD 75
Query: 408 LVGLP 412
L
Sbjct: 76 LRNSS 80
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 59.3 bits (144), Expect = 2e-11
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 60 VFESDEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 116
+F+ +E+V+ + LG I ++ P + I + P GAAA G+L + D ++
Sbjct: 2 MFKYEEIVLERGNSG-LGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVL 60
Query: 117 AVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
VN V + + S +K + VV+L V
Sbjct: 61 RVNEVDVSEVVHSRAVEALKEAGP--VVRLVV 90
Score = 52.3 bits (126), Expect = 7e-09
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 348 QKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 404
+E+V+ + LG I ++ P + I + P GAAA G+L + D ++ VN
Sbjct: 5 YEEIVLERGNSG-LGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVN 63
Query: 405 GVSLVGL 411
V + +
Sbjct: 64 EVDVSEV 70
Score = 51.2 bits (123), Expect = 2e-08
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 452 LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
LG I ++ P + I + P GAAA G+L + D ++ VN V + +
Sbjct: 17 LGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEV 70
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 58.8 bits (143), Expect = 3e-11
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 76 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI 135
G +V G + I +L G AA G++ GD I++VN ++G +
Sbjct: 13 FGFTVV--GGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIF 70
Query: 136 KNSKNQTVVKLTV 148
++ V L +
Sbjct: 71 QSIPIGASVDLEL 83
Score = 51.1 bits (123), Expect = 1e-08
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 361 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
G +V G + I +L G AA G++ GD I++VN ++G
Sbjct: 13 FGFTVV--GGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGH 61
Score = 51.1 bits (123), Expect = 1e-08
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 452 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
G +V G + I +L G AA G++ GD I++VN ++G
Sbjct: 13 FGFTVV--GGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGH 61
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 58.8 bits (143), Expect = 3e-11
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 62 ESDEVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 120
E +V + K GE LG+ +V + P V I +L G AA+ G+L+ D+++A+NG
Sbjct: 3 EILQVALHKRDSGEQLGIKLVR---RTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAING 59
Query: 121 VSLVGLPLSTCQTYIKNSKNQTVVKLTVV-PCAPVVEV 157
L I+ S V LT+ P P +E+
Sbjct: 60 HDLKYGTPELAAQIIQASGE--RVNLTIARPGKPEIEL 95
Score = 54.2 bits (131), Expect = 1e-09
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 350 EVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+V + K GE LG+ +V + P V I +L G AA+ G+L+ D+++A+NG L
Sbjct: 6 QVALHKRDSGEQLGIKLVR---RTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDL 62
Query: 409 VGL 411
Sbjct: 63 KYG 65
Score = 53.8 bits (130), Expect = 2e-09
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 446 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
+ GE LG+ +V + P V I +L G AA+ G+L+ D+++A+NG L
Sbjct: 12 RDSGEQLGIKLVR---RTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYG 65
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 59.4 bits (144), Expect = 3e-11
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 349 KEVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 401
+ V + + LG+ IV G L + I + A + L GD+I+
Sbjct: 17 RIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKIL 76
Query: 402 AVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQETPVVVP 445
V+GV L + ++ + +F + + TP V+P
Sbjct: 77 EVSGVDLQNA---SHSEAVEAIKNAGNPVVFIVQSLSSTPRVIP 117
Score = 59.0 bits (143), Expect = 4e-11
Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 9/99 (9%)
Query: 58 CHVFESDEVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLN 110
H V + + LG+ IV G L + I + A + L
Sbjct: 11 SHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALK 70
Query: 111 IGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
GD+I+ V+GV L S IKN+ N V V
Sbjct: 71 TGDKILEVSGVDLQNASHSEAVEAIKNAGN--PVVFIVQ 107
Score = 57.5 bits (139), Expect = 1e-10
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 437 GQETPVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGD 489
G V + + LG+ IV G L + I + A + L GD
Sbjct: 14 GPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGD 73
Query: 490 QIIAVNGVSLVGL 502
+I+ V+GV L
Sbjct: 74 KILEVSGVDLQNA 86
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 58.8 bits (143), Expect = 4e-11
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ + L G A RCG+L +GD ++ +NG S GL + I+ + L +
Sbjct: 40 LAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGP--QLHLVI 94
Score = 53.8 bits (130), Expect = 3e-09
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
+ + L G A RCG+L +GD ++ +NG S GL
Sbjct: 40 LAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGL 74
Score = 53.8 bits (130), Expect = 3e-09
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
+ + L G A RCG+L +GD ++ +NG S GL
Sbjct: 40 LAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGL 74
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 58.6 bits (142), Expect = 4e-11
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
EV V K + LG+ I ++G G I + G + +GD I ++NG ++V
Sbjct: 8 EVNVYK-SEDSLGLTITDNGVGY----AFIKRIKDGGVIDSVKTICVGDHIESINGENIV 62
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVP 150
G +K K + + + ++
Sbjct: 63 GWRHYDVAKKLKELKKEELFTMKLIE 88
Score = 52.8 bits (127), Expect = 4e-09
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
KEV V K + LG+ I ++G G I + G + +GD I ++NG ++
Sbjct: 7 KEVNVYK-SEDSLGLTITDNGVGY----AFIKRIKDGGVIDSVKTICVGDHIESINGENI 61
Query: 409 VGL 411
VG
Sbjct: 62 VGW 64
Score = 52.8 bits (127), Expect = 5e-09
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 435 LTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 494
+ G E V V K + LG+ I ++G G I + G + +GD I ++
Sbjct: 2 MKGIEKEVNVYK-SEDSLGLTITDNGVGY----AFIKRIKDGGVIDSVKTICVGDHIESI 56
Query: 495 NGVSLVGL 502
NG ++VG
Sbjct: 57 NGENIVGW 64
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 58.9 bits (143), Expect = 4e-11
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 61 FESDEVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 119
F+ V + K AKG G I G + + + LA G A R G++ +GDQII +N
Sbjct: 10 FDYFTVDMEKGAKG--FGFSIR-GGREYKMD-LYVLRLAEDGPAIRNGRMRVGDQIIEIN 65
Query: 120 GVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
G S + + IK+ V+L +
Sbjct: 66 GESTRDMTHARAIELIKSGGR--RVRLLL 92
Score = 52.7 bits (127), Expect = 5e-09
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 350 EVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
V + K AKG G I G + + + LA G A R G++ +GDQII +NG S
Sbjct: 14 TVDMEKGAKG--FGFSIR-GGREYKMD-LYVLRLAEDGPAIRNGRMRVGDQIIEINGEST 69
Query: 409 VGL 411
+
Sbjct: 70 RDM 72
Score = 52.7 bits (127), Expect = 5e-09
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 452 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
G I G + + + LA G A R G++ +GDQII +NG S +
Sbjct: 24 FGFSIR-GGREYKMD-LYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDM 72
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 59.4 bits (144), Expect = 4e-11
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 41 SQEADEPPKISRTPKMICHVFESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPA 100
S +A KI + + + + K K LG+ + ++ + + P
Sbjct: 6 SGDAFTDQKIRQRYADLPGELH--IIELEKDKNG-LGLSLA-GNKDRSRMSIFVVGINPE 61
Query: 101 GAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
G AA G++ IGD+++ +N L G IK + + VKL
Sbjct: 62 GPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPS--KVKLVF 107
Score = 56.3 bits (136), Expect = 5e-10
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 435 LTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 494
L G+ + + K K LG+ + ++ + + P G AA G++ IGD+++ +
Sbjct: 22 LPGELHIIELEKDKNG-LGLSLA-GNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEI 79
Query: 495 NGVSLVGL 502
N L G
Sbjct: 80 NNQILYGR 87
Score = 54.8 bits (132), Expect = 2e-09
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 361 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
LG+ + ++ + + P G AA G++ IGD+++ +N L G
Sbjct: 38 LGLSLA-GNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGR 87
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 59.4 bits (144), Expect = 4e-11
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 69 PKAKGEILGVVIV--ESGWG-------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 119
+ KG L + G+G + + ++ P G AA+ G++ GD I+ +N
Sbjct: 14 SQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYIN 73
Query: 120 GVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
V ++G + ++ V L +
Sbjct: 74 EVCVLGHTHADVVKLFQSVPIGQSVNLVL 102
Score = 52.0 bits (125), Expect = 2e-08
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 435 LTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 494
L G + K+ G I+ G + + ++ P G AA+ G++ GD I+ +
Sbjct: 16 LKGTFLSTTLKKSNMG-FGFTII--GGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYI 72
Query: 495 NGVSLVGL 502
N V ++G
Sbjct: 73 NEVCVLGH 80
Score = 52.0 bits (125), Expect = 2e-08
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 354 PKAKGEILGVVIV--ESGWG-------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 404
+ KG L + G+G + + ++ P G AA+ G++ GD I+ +N
Sbjct: 14 SQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYIN 73
Query: 405 GVSLVGL 411
V ++G
Sbjct: 74 EVCVLGH 80
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 58.2 bits (141), Expect = 5e-11
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 62 ESDEVVVPKA-KGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 120
+ +V + K+ K E G+ + + + ++ AAR G + GD ++ +NG
Sbjct: 2 KPTKVTLVKSAKNEEYGLRLASH--------IFVKEISQDSLAARDGNIQEGDVVLKING 53
Query: 121 VSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ L+ +T I+ SK + +K+ V
Sbjct: 54 TVTENMSLTDAKTLIERSKGK--LKMVV 79
Score = 55.1 bits (133), Expect = 7e-10
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 437 GQETPVVVPKA-KGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 495
+ T V + K+ K E G+ + + + ++ AAR G + GD ++ +N
Sbjct: 1 AKPTKVTLVKSAKNEEYGLRLASH--------IFVKEISQDSLAARDGNIQEGDVVLKIN 52
Query: 496 GVSLVGLPLSTCQTYIK 512
G + L+ +T I+
Sbjct: 53 GTVTENMSLTDAKTLIE 69
Score = 50.9 bits (122), Expect = 2e-08
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 349 KEVVVPKA-KGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 407
+V + K+ K E G+ + + + ++ AAR G + GD ++ +NG
Sbjct: 4 TKVTLVKSAKNEEYGLRLASH--------IFVKEISQDSLAARDGNIQEGDVVLKINGTV 55
Query: 408 LVGLPLSTCQTYIK 421
+ L+ +T I+
Sbjct: 56 TENMSLTDAKTLIE 69
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 58.7 bits (142), Expect = 5e-11
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 66 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSLV 124
+ + + G + G+ +P V+++ +AP A C +LN GDQ++ +NG +
Sbjct: 21 IRMKPDENGRFGFNVK-GGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 78
Query: 125 GLPLSTCQTYIKNSKNQT--VVKLTVVP 150
+IK S + + L V P
Sbjct: 79 EHTHDQVVLFIKASCERHSGELMLLVRP 106
Score = 54.4 bits (131), Expect = 2e-09
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 428 PTSMFRLLTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARC-GQLN 486
PT + + + + G + G+ +P V+++ +AP A C +LN
Sbjct: 7 PTPNGGIPHDNLVLIRMKPDENGRFGFNVK-GGYDQKMP-VIVSRVAPGTPADLCVPRLN 64
Query: 487 IGDQIIAVNGVSLVGL 502
GDQ++ +NG +
Sbjct: 65 EGDQVVLINGRDIAEH 80
Score = 53.7 bits (129), Expect = 3e-09
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 351 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSLV 409
+ + + G + G+ +P V+++ +AP A C +LN GDQ++ +NG +
Sbjct: 21 IRMKPDENGRFGFNVK-GGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 78
Query: 410 GL 411
Sbjct: 79 EH 80
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 58.9 bits (143), Expect = 5e-11
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ + N+ P GAA + G+L GD++I VNGV LVG + ++++K + V L V
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLV 116
Score = 52.8 bits (127), Expect = 8e-09
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 437 GQETPVVVPK-AKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQIIA 493
G+ + + K +G LG I S ++ + + + N+ P GAA + G+L GD++I
Sbjct: 29 GKRLNIQLKKGTEG--LGFSIT-SRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIE 85
Query: 494 VNGVSLVGL 502
VNGV LVG
Sbjct: 86 VNGVDLVGK 94
Score = 52.0 bits (125), Expect = 2e-08
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
+ + N+ P GAA + G+L GD++I VNGV LVG
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGK 94
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 59.0 bits (143), Expect = 6e-11
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 65 EVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
E+ + + LGV + G+ L + I ++ GAA + G+L + DQ+IAVNG
Sbjct: 28 EIPLNDSGSAGLGVSLKGNKSRETGTDLG-IFIKSIIHGGAAFKDGRLRMNDQLIAVNGE 86
Query: 122 SLVGLPLSTCQTYIKNSKNQT-----VVKLTVV 149
+L+G ++ S + +++L ++
Sbjct: 87 TLLGKSNHEAMETLRRSMSMEGNIRGMIQLVIL 119
Score = 57.5 bits (139), Expect = 2e-10
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 346 ELQKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 402
+L E+ + + LGV + G+ L + I ++ GAA + G+L + DQ+IA
Sbjct: 24 QLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLG-IFIKSIIHGGAAFKDGRLRMNDQLIA 82
Query: 403 VNGVSLVGL 411
VNG +L+G
Sbjct: 83 VNGETLLGK 91
Score = 55.2 bits (133), Expect = 1e-09
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 442 VVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 498
+ + + LGV + G+ L + I ++ GAA + G+L + DQ+IAVNG +
Sbjct: 29 IPLNDSGSAGLGVSLKGNKSRETGTDLG-IFIKSIIHGGAAFKDGRLRMNDQLIAVNGET 87
Query: 499 LVGL 502
L+G
Sbjct: 88 LLGK 91
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 57.3 bits (139), Expect = 9e-11
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ + ++ AAR G + GD ++ +NG + L+ +T I+ SK + +K+ V
Sbjct: 23 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGK--LKMVV 77
Score = 50.0 bits (120), Expect = 3e-08
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 421
+ + ++ AAR G + GD ++ +NG + L+ +T I+
Sbjct: 23 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIE 67
Score = 50.0 bits (120), Expect = 3e-08
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+ + ++ AAR G + GD ++ +NG + L+ +T I+
Sbjct: 23 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIE 67
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 57.7 bits (140), Expect = 9e-11
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 62 ESDEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 118
E + + V K +G+ IV +G + + + ++ GAA G+L GDQ+++V
Sbjct: 9 EPEIITVTLKKQNGMGLSIVAAKGAGQDKL--GIYVKSVVKGGAADVDGRLAAGDQLLSV 66
Query: 119 NGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+G SLVGL + + + VV L V
Sbjct: 67 DGRSLVGLSQERAAELMTRTSS--VVTLEV 94
Score = 53.9 bits (130), Expect = 2e-09
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 348 QKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 404
+ + V K +G+ IV +G + + + ++ GAA G+L GDQ+++V+
Sbjct: 10 PEIITVTLKKQNGMGLSIVAAKGAGQDKL--GIYVKSVVKGGAADVDGRLAAGDQLLSVD 67
Query: 405 GVSLVGL 411
G SLVGL
Sbjct: 68 GRSLVGL 74
Score = 53.9 bits (130), Expect = 2e-09
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 442 VVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 498
+ V K +G+ IV +G + + + ++ GAA G+L GDQ+++V+G S
Sbjct: 13 ITVTLKKQNGMGLSIVAAKGAGQDKL--GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRS 70
Query: 499 LVGL 502
LVGL
Sbjct: 71 LVGL 74
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 61.3 bits (148), Expect = 1e-10
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 428 PTSMFRLLTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNI 487
P + L Q V V KA LG+ I G + +P ++I+ + AA + L +
Sbjct: 67 PPQLPEALLLQRRRVTVRKADAGGLGISIK-GGRENKMP-ILISKIFKGLAADQTEALFV 124
Query: 488 GDQIIAVNGVSLVGLP 503
GD I++VNG L
Sbjct: 125 GDAILSVNGEDLSSAT 140
Score = 59.4 bits (143), Expect = 4e-10
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 348 QKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 407
++ V V KA LG+ I G + +P ++I+ + AA + L +GD I++VNG
Sbjct: 78 RRRVTVRKADAGGLGISIK-GGRENKMP-ILISKIFKGLAADQTEALFVGDAILSVNGED 135
Query: 408 LVGLP 412
L
Sbjct: 136 LSSAT 140
Score = 58.6 bits (141), Expect = 8e-10
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
V V KA LG+ I G + +P ++I+ + AA + L +GD I++VNG L
Sbjct: 80 RVTVRKADAGGLGISIK-GGRENKMP-ILISKIFKGLAADQTEALFVGDAILSVNGEDLS 137
Query: 125 GLP 127
Sbjct: 138 SAT 140
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 57.8 bits (140), Expect = 1e-10
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 51 SRTPKMICHVFESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLN 110
S +P F + V K G LG+ I+ + P V I + P G + G+L
Sbjct: 6 SGSPLDRDPAFR--VITVTKETG--LGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLK 61
Query: 111 IGDQIIAVNGVSLVGLPLSTCQTYIKNSKN--QTVVKLTVVPCAP 153
GDQ++++N S++G+ ++ I +K ++ ++ + P
Sbjct: 62 PGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP 106
Score = 55.1 bits (133), Expect = 9e-10
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 435 LTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 494
L V+ K LG+ I+ + P V I + P G + G+L GDQ++++
Sbjct: 10 LDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSI 69
Query: 495 NGVSLVGL 502
N S++G+
Sbjct: 70 NKESMIGV 77
Score = 54.4 bits (131), Expect = 2e-09
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 351 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 410
V+ K LG+ I+ + P V I + P G + G+L GDQ++++N S++G
Sbjct: 17 RVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIG 76
Query: 411 L 411
+
Sbjct: 77 V 77
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 57.7 bits (140), Expect = 1e-10
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 65 EVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
V + + LG+ ++ + G+ P + I L P AA G+L++GD+I+ VNG
Sbjct: 11 TVELERGPSG-LGMGLIDGMHTHLGA--PGLYIQTLLPGSPAAADGRLSLGDRILEVNGS 67
Query: 122 SLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDT 164
SL+GL I++ ++ V KI +
Sbjct: 68 SLLGLGYLRAVDLIRHGGK--KMRFLVAKSDVETAKKIHSGPS 108
Score = 55.0 bits (133), Expect = 1e-09
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 437 GQETPVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 493
G V + + LG+ ++ + G+ P + I L P AA G+L++GD+I+
Sbjct: 7 GYVFTVELERGPSG-LGMGLIDGMHTHLGA--PGLYIQTLLPGSPAAADGRLSLGDRILE 63
Query: 494 VNGVSLVGL 502
VNG SL+GL
Sbjct: 64 VNGSSLLGL 72
Score = 54.3 bits (131), Expect = 2e-09
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 350 EVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 406
V + + LG+ ++ + G+ P + I L P AA G+L++GD+I+ VNG
Sbjct: 11 TVELERGPSG-LGMGLIDGMHTHLGA--PGLYIQTLLPGSPAAADGRLSLGDRILEVNGS 67
Query: 407 SLVGL 411
SL+GL
Sbjct: 68 SLLGL 72
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 56.9 bits (138), Expect = 1e-10
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 75 ILGVVIVESGWGSML-----PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 129
++GV++++S + + + G A + G L+ GD I+ +NG + L+
Sbjct: 1 MIGVLLMKSRANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLT 60
Query: 130 TCQTYIKNSKNQTVVKLTV 148
+ I+ S+ + ++L V
Sbjct: 61 DARKLIEKSRGK--LQLVV 77
Score = 49.6 bits (119), Expect = 4e-08
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 360 ILGVVIVESGWGSML-----PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 414
++GV++++S + + + G A + G L+ GD I+ +NG + L+
Sbjct: 1 MIGVLLMKSRANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLT 60
Query: 415 TCQTYIK 421
+ I+
Sbjct: 61 DARKLIE 67
Score = 49.6 bits (119), Expect = 4e-08
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 451 ILGVVIVESGWGSML-----PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 505
++GV++++S + + + G A + G L+ GD I+ +NG + L+
Sbjct: 1 MIGVLLMKSRANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLT 60
Query: 506 TCQTYIK 512
+ I+
Sbjct: 61 DARKLIE 67
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 57.3 bits (139), Expect = 2e-10
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ + N+ P GAA + G+L GD++I VNGV L G + ++++K + V L V
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLV 97
Score = 53.1 bits (128), Expect = 5e-09
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLT 436
+ + N+ P GAA + G+L GD++I VNGV L G + + + +L T LL
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGK---SQEEVVSLLRSTKMEGTVSLLV 97
Query: 437 GQETPVVVPK 446
++ P+
Sbjct: 98 FRQEEAFHPR 107
Score = 53.1 bits (128), Expect = 6e-09
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 437 GQETPVVVPK-AKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 492
G+ + + K +G LG I + GS + + N+ P GAA + G+L GD++I
Sbjct: 10 GKRLNIQLKKGTEG--LGFSITSRDVTIGGSAP--IYVKNILPRGAAIQDGRLKAGDRLI 65
Query: 493 AVNGVSLVGL 502
VNGV L G
Sbjct: 66 EVNGVDLAGK 75
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 57.2 bits (138), Expect = 2e-10
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 66 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSLV 124
+ + + G + G+ +P V+++ +AP A C +LN GDQ++ +NG +
Sbjct: 19 IRMKPDENGRFGFNVK-GGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 76
Query: 125 GLPLSTCQTYIKNSKNQT--VVKLTVVPCAPVVEVKIKRPDT 164
+IK S + + L V P A V+ P +
Sbjct: 77 EHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEESGPSS 118
Score = 51.8 bits (124), Expect = 2e-08
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 351 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSLV 409
+ + + G + G+ +P V+++ +AP A C +LN GDQ++ +NG +
Sbjct: 19 IRMKPDENGRFGFNVK-GGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 76
Query: 410 GL 411
Sbjct: 77 EH 78
Score = 51.8 bits (124), Expect = 2e-08
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSLV 500
+ + + G + G+ +P V+++ +AP A C +LN GDQ++ +NG +
Sbjct: 19 IRMKPDENGRFGFNVK-GGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 76
Query: 501 GL 502
Sbjct: 77 EH 78
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 56.4 bits (137), Expect = 2e-10
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 65 EVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
EV + K LG+ + + + + + P GAA G+++ GD+++AVNGV
Sbjct: 8 EVELAKNDNS-LGISVTGGVNTSVRHG--GIYVKAVIPQGAAESDGRIHKGDRVLAVNGV 64
Query: 122 SLVGLPLSTCQTYIKNSKNQTVVKLTV 148
SL G ++N+ VV L +
Sbjct: 65 SLEGATHKQAVETLRNTGQ--VVHLLL 89
Score = 54.9 bits (133), Expect = 8e-10
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 437 GQETPVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 493
G V + K LG+ + + + + + P GAA G+++ GD+++A
Sbjct: 4 GDIFEVELAKNDNS-LGISVTGGVNTSVRHG--GIYVKAVIPQGAAESDGRIHKGDRVLA 60
Query: 494 VNGVSLVGL 502
VNGVSL G
Sbjct: 61 VNGVSLEGA 69
Score = 54.5 bits (132), Expect = 1e-09
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 350 EVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 406
EV + K LG+ + + + + + P GAA G+++ GD+++AVNGV
Sbjct: 8 EVELAKNDNS-LGISVTGGVNTSVRHG--GIYVKAVIPQGAAESDGRIHKGDRVLAVNGV 64
Query: 407 SLVGL 411
SL G
Sbjct: 65 SLEGA 69
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 57.1 bits (138), Expect = 2e-10
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 59 HVFESDEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQI 115
++ +E+ + + LG IV + + S + ++ + GAAA G+L GD+I
Sbjct: 14 YLVTEEEINLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKI 72
Query: 116 IAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
++VNG L L +N+ V L V
Sbjct: 73 LSVNGQDLKNLLHQDAVDLFRNAGY--AVSLRV 103
Score = 52.4 bits (126), Expect = 9e-09
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 348 QKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 404
++E+ + + LG IV + + S + ++ + GAAA G+L GD+I++VN
Sbjct: 18 EEEINLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN 76
Query: 405 GVSLVGL 411
G L L
Sbjct: 77 GQDLKNL 83
Score = 52.4 bits (126), Expect = 1e-08
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 436 TGQETPVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 492
E + + + LG IV + + S + ++ + GAAA G+L GD+I+
Sbjct: 15 LVTEEEINLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKIL 73
Query: 493 AVNGVSLVGL 502
+VNG L L
Sbjct: 74 SVNGQDLKNL 83
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 58.4 bits (141), Expect = 3e-10
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 46 EPPKISRTPKMICHVFESDEVVVPKAKGEI-LGVVIVESGWGSMLPT----VVIANLAPA 100
+P S ++ V + V K LG+ I+ G G+ + + + +
Sbjct: 62 DPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEG 121
Query: 101 GAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
GAA R G++ + D ++ V+G SLVG+ S + ++N+K V+ +
Sbjct: 122 GAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKG--RVRFMI 167
Score = 53.8 bits (129), Expect = 1e-08
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 361 LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
LG+ I+ G G+ + + + + GAA R G++ + D ++ V+G SLVG+
Sbjct: 93 LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGV 147
Score = 53.8 bits (129), Expect = 1e-08
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 452 LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
LG+ I+ G G+ + + + + GAA R G++ + D ++ V+G SLVG+
Sbjct: 93 LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGV 147
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 56.1 bits (136), Expect = 3e-10
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ + ++ + A G++ IGDQIIAV+G +L G ++++ V LT+
Sbjct: 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ--TVLLTL 89
Score = 53.0 bits (128), Expect = 4e-09
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
+ + ++ + A G++ IGDQIIAV+G +L G
Sbjct: 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGF 69
Score = 53.0 bits (128), Expect = 4e-09
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
+ + ++ + A G++ IGDQIIAV+G +L G
Sbjct: 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGF 69
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 56.6 bits (137), Expect = 3e-10
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 76 LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 131
LG+ I+ G G+ + + + GAA R G++ + DQI+ V+G+SLVG+ +
Sbjct: 22 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFA 81
Query: 132 QTYIKNSKNQTVVKLTVVPCAP 153
T ++N+K V+ + P
Sbjct: 82 ATVLRNTKG--NVRFVIGREKP 101
Score = 53.5 bits (129), Expect = 3e-09
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 361 LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
LG+ I+ G G+ + + + GAA R G++ + DQI+ V+G+SLVG+
Sbjct: 22 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGV 76
Score = 53.5 bits (129), Expect = 3e-09
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 452 LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
LG+ I+ G G+ + + + GAA R G++ + DQI+ V+G+SLVG+
Sbjct: 22 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGV 76
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 55.7 bits (135), Expect = 4e-10
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 62 ESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
S V +PK LG I+ G P + I+ + P G A R G L GDQ+++VNGV
Sbjct: 5 SSGVVELPKTDEG-LGFNIM-GGKEQNSP-IYISRVIPGGVADRHGGLKRGDQLLSVNGV 61
Query: 122 SLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
S+ G +K ++ VKL V
Sbjct: 62 SVEGEQHEKAVELLKAAQG--SVKLVVR 87
Score = 54.6 bits (132), Expect = 1e-09
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 436 TGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 495
+G V +PK LG I+ G P + I+ + P G A R G L GDQ+++VN
Sbjct: 3 SGSSGVVELPKTDEG-LGFNIM-GGKEQNSP-IYISRVIPGGVADRHGGLKRGDQLLSVN 59
Query: 496 GVSLVGL 502
GVS+ G
Sbjct: 60 GVSVEGE 66
Score = 53.0 bits (128), Expect = 4e-09
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 361 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP-------L 413
LG I+ G P + I+ + P G A R G L GDQ+++VNGVS+ G L
Sbjct: 18 LGFNIM-GGKEQNSP-IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELL 75
Query: 414 STCQTYIKILMKTMPTS 430
Q +K+++++ P+S
Sbjct: 76 KAAQGSVKLVVRSGPSS 92
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 55.9 bits (135), Expect = 4e-10
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
V + K LG+ IV + I ++ GA A G++ GD ++ VN ++
Sbjct: 8 TVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFE 67
Query: 125 GLPLSTCQTYIKNSKNQT-VVKLTVV 149
+ +++ ++ + LTV
Sbjct: 68 NMSNDDAVRVLRDIVHKPGPIVLTVA 93
Score = 55.1 bits (133), Expect = 1e-09
Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 336 GDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLN 395
G + + V + K LG+ IV + I ++ GA A G++
Sbjct: 1 GSHMNII-------TVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIE 53
Query: 396 IGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTS 430
GD ++ VN ++ + + +++L +
Sbjct: 54 PGDMLLQVNDMNFENM---SNDDAVRVLRDIVHKP 85
Score = 53.6 bits (129), Expect = 3e-09
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 440 TPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
V + K LG+ IV + I ++ GA A G++ GD ++ VN ++
Sbjct: 7 ITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNF 66
Query: 500 VGL 502
+
Sbjct: 67 ENM 69
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 55.4 bits (134), Expect = 5e-10
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 59 HVFESDEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQI 115
++ +E+ + + LG IV + + S + ++ + GAAA G+L GD+I
Sbjct: 4 YLVTEEEINLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKI 62
Query: 116 IAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
++VNG L L +N+ V L V
Sbjct: 63 LSVNGQDLKNLLHQDAVDLFRNAGY--AVSLRV 93
Score = 51.9 bits (125), Expect = 1e-08
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 348 QKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 404
++E+ + + LG IV + + S + ++ + GAAA G+L GD+I++VN
Sbjct: 8 EEEINLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN 66
Query: 405 GVSLVGL 411
G L L
Sbjct: 67 GQDLKNL 73
Score = 51.6 bits (124), Expect = 1e-08
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 438 QETPVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 494
E + + + LG IV + + S + ++ + GAAA G+L GD+I++V
Sbjct: 7 TEEEINLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 65
Query: 495 NGVSLVGL 502
NG L L
Sbjct: 66 NGQDLKNL 73
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 55.9 bits (135), Expect = 6e-10
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 62 ESDEVVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQI 115
+S +V+ + G LG I+ ++ GS + ++ + +G AA+ G L I D+I
Sbjct: 8 KSLTLVLHRDSGS-LGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRI 66
Query: 116 IAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
I VNG L K +K + + V+
Sbjct: 67 IEVNGRDLSRATHDQAVEAFKTAKE--PIVVQVL 98
Score = 54.7 bits (132), Expect = 1e-09
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 436 TGQETPVVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGD 489
+G+ +V+ + G LG I+ ++ GS + ++ + +G AA+ G L I D
Sbjct: 6 SGKSLTLVLHRDSGS-LGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHD 64
Query: 490 QIIAVNGVSLVGL 502
+II VNG L
Sbjct: 65 RIIEVNGRDLSRA 77
Score = 52.4 bits (126), Expect = 9e-09
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 350 EVVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 403
+V+ + G LG I+ ++ GS + ++ + +G AA+ G L I D+II V
Sbjct: 11 TLVLHRDSGS-LGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEV 69
Query: 404 NGVSLVGL 411
NG L
Sbjct: 70 NGRDLSRA 77
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 56.4 bits (136), Expect = 6e-10
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 7/103 (6%)
Query: 65 EVVVPK-AKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
V + K + G LG + G GS+ + I + A+ + + GD+I+ + G
Sbjct: 32 TVTLEKMSAG--LGFSLE-GGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGT 88
Query: 122 SLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDT 164
++ GL IK V + + + + D+
Sbjct: 89 AMQGLTRFEAWNIIKALP-DGPVTIVIRRKSLQSKETTAAGDS 130
Score = 53.7 bits (129), Expect = 5e-09
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 436 TGQETPVVVPK-AKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQII 492
V + K + G LG + G GS+ + I + A+ + + GD+I+
Sbjct: 27 EATVCTVTLEKMSAG--LGFSLE-GGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEIL 83
Query: 493 AVNGVSLVGL 502
+ G ++ GL
Sbjct: 84 QLGGTAMQGL 93
Score = 52.5 bits (126), Expect = 1e-08
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 350 EVVVPK-AKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNGV 406
V + K + G LG + G GS+ + I + A+ + + GD+I+ + G
Sbjct: 32 TVTLEKMSAG--LGFSLE-GGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGT 88
Query: 407 SLVGL 411
++ GL
Sbjct: 89 AMQGL 93
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 55.8 bits (135), Expect = 6e-10
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 61 FESDEVVVPK-AKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 116
E+ + K KG LG I + ++ + + GAA + G+L +GD+++
Sbjct: 23 MTVVEIKLFKGPKG--LGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLL 80
Query: 117 AVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
VN SL + +KN+ VV L V
Sbjct: 81 MVNNYSLEEVTHEEAVAILKNTSE--VVYLKV 110
Score = 51.6 bits (124), Expect = 2e-08
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 350 EVVVPK-AKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 405
E+ + K KG LG I + ++ + + GAA + G+L +GD+++ VN
Sbjct: 27 EIKLFKGPKG--LGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNN 84
Query: 406 VSLVGL 411
SL +
Sbjct: 85 YSLEEV 90
Score = 51.2 bits (123), Expect = 3e-08
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 452 LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
LG I + ++ + + GAA + G+L +GD+++ VN SL +
Sbjct: 37 LGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEV 90
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 55.4 bits (134), Expect = 6e-10
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 76 LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQ 132
LG I + ++ + + GAA + G+L IGD+++AVN VSL +
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAV 75
Query: 133 TYIKNSKNQTVVKLTV 148
T +KN+ + V L V
Sbjct: 76 TALKNTSD--FVYLKV 89
Score = 51.2 bits (123), Expect = 2e-08
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 361 LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
LG I + ++ + + GAA + G+L IGD+++AVN VSL +
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEV 69
Score = 51.2 bits (123), Expect = 2e-08
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 452 LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
LG I + ++ + + GAA + G+L IGD+++AVN VSL +
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEV 69
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 56.4 bits (136), Expect = 6e-10
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
+V + G LG+ I G L + I + P A G L +GDQI+ VNG S +
Sbjct: 23 KVNLVLGDGRSLGLTIR-GGAEYGLG-IYITGVDPGSEAEGSG-LKVGDQILEVNGRSFL 79
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDTKYQLG 169
+ +K+S++ + LTV + + +TK+
Sbjct: 80 NILHDEAVRLLKSSRH---LILTVKDVGRLPHARTTVDETKWIAS 121
Score = 52.5 bits (126), Expect = 1e-08
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 429 TSMFRLLTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIG 488
+++ L G E V + G LG+ I G L + I + P A G L +G
Sbjct: 11 STLHLLQGGDEKKVNLVLGDGRSLGLTIR-GGAEYGLG-IYITGVDPGSEAEGSG-LKVG 67
Query: 489 DQIIAVNGVSLVGL 502
DQI+ VNG S + +
Sbjct: 68 DQILEVNGRSFLNI 81
Score = 51.0 bits (122), Expect = 4e-08
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
K+V + G LG+ I G L + I + P A G L +GDQI+ VNG S
Sbjct: 22 KKVNLVLGDGRSLGLTIR-GGAEYGLG-IYITGVDPGSEAEGSG-LKVGDQILEVNGRSF 78
Query: 409 VGL 411
+ +
Sbjct: 79 LNI 81
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 55.8 bits (135), Expect = 7e-10
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
+ + + GAA+ G+L GDQIIAVNG SL G+ +K +K V L V+
Sbjct: 55 IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG--TVTLMVL 110
Score = 53.9 bits (130), Expect = 3e-09
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 323 MDYQEVLNSQEIFGDELQMFAKKELQKEVVVPK-AKGEILGVVIV---ESGWGSMLPTVV 378
M + +S G E F K + + + G LG IV S G + +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMPQCKSITLERGPDG--LGFSIVGGYGSPHGDL--PIY 56
Query: 379 IANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
+ + GAA+ G+L GDQIIAVNG SL G+
Sbjct: 57 VKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGV 89
Score = 52.7 bits (127), Expect = 7e-09
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
+ + + GAA+ G+L GDQIIAVNG SL G+
Sbjct: 55 IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGV 89
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 56.0 bits (135), Expect = 7e-10
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 65 EVVVPKAK-GEILGVVIVESGWGSMLPT-------VVIANLAPAGAAARCGQLNIGDQII 116
V + K + LG I + + P + I+ L P G A G L + D+++
Sbjct: 32 RVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVL 91
Query: 117 AVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVP 150
VNG+ + G L + + + +TV P
Sbjct: 92 EVNGIEVSGKSLDQVTDMMIANSRN--LIITVRP 123
Score = 50.2 bits (120), Expect = 9e-08
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 349 KEVVVPKAK-GEILGVVIVESGWGSMLPT-------VVIANLAPAGAAARCGQLNIGDQI 400
+ V + K + LG I + + P + I+ L P G A G L + D++
Sbjct: 31 RRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEV 90
Query: 401 IAVNGVSLVGL 411
+ VNG+ + G
Sbjct: 91 LEVNGIEVSGK 101
Score = 48.3 bits (115), Expect = 3e-07
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 442 VVVPKAK-GEILGVVIVESGWGSMLPT-------VVIANLAPAGAAARCGQLNIGDQIIA 493
V + K + LG I + + P + I+ L P G A G L + D+++
Sbjct: 33 VRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLE 92
Query: 494 VNGVSLVGL 502
VNG+ + G
Sbjct: 93 VNGIEVSGK 101
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 55.5 bits (134), Expect = 8e-10
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 62 ESDEVVVPKAKGEI-LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQII 116
+ V K LG+ I+ G G+ + + + + GAA R G++ + D ++
Sbjct: 2 HMELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLV 61
Query: 117 AVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
V+G SLVG+ S + ++N+K V+ +
Sbjct: 62 EVDGTSLVGVTQSFAASVLRNTKG--RVRFMI 91
Score = 52.4 bits (126), Expect = 8e-09
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 361 LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
LG+ I+ G G+ + + + + GAA R G++ + D ++ V+G SLVG+
Sbjct: 17 LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGV 71
Score = 52.4 bits (126), Expect = 8e-09
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 452 LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
LG+ I+ G G+ + + + + GAA R G++ + D ++ V+G SLVG+
Sbjct: 17 LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGV 71
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 55.0 bits (133), Expect = 9e-10
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIGDQIIAV 118
EV + K LG+ + + T + + + P GAA G+++ GD+++AV
Sbjct: 12 EVELAKNDNS-LGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 70
Query: 119 NGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVE 156
NGVSL G ++N+ VV L +
Sbjct: 71 NGVSLEGATHKQAVETLRNTGQ--VVHLLLEKGQSPTS 106
Score = 53.1 bits (128), Expect = 4e-09
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 437 GQETPVVVPKAKGEILGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIGDQ 490
G V + K LG+ + + T + + + P GAA G+++ GD+
Sbjct: 8 GDIFEVELAKNDNS-LGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDR 66
Query: 491 IIAVNGVSLVGL 502
++AVNGVSL G
Sbjct: 67 VLAVNGVSLEGA 78
Score = 52.7 bits (127), Expect = 5e-09
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 350 EVVVPKAKGEILGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIGDQIIAV 403
EV + K LG+ + + T + + + P GAA G+++ GD+++AV
Sbjct: 12 EVELAKNDNS-LGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 70
Query: 404 NGVSLVGL 411
NGVSL G
Sbjct: 71 NGVSLEGA 78
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 55.1 bits (133), Expect = 9e-10
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 62 ESDEVVVPK-AKGEILGVVIVESGWGSMLPT---VVIANLAPAGAAARCGQLNIGDQIIA 117
E V + K KG LG I+ + PT +VI +L G A R G L GD++++
Sbjct: 15 EVKIVELVKDCKG--LGFSIL-DYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVS 71
Query: 118 VNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
VN L L+ +K +V L +
Sbjct: 72 VNEYCLDNTSLAEAVEILKAVP-PGLVHLGI 101
Score = 50.1 bits (120), Expect = 5e-08
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 435 LTGQETPVVVPKAKGEILGVVIVESGWGSMLPT---VVIANLAPAGAAARCGQLNIGDQI 491
L E +V + LG I+ + PT +VI +L G A R G L GD++
Sbjct: 11 LWSPEVKIVELVKDCKGLGFSIL-DYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRL 69
Query: 492 IAVNGVSLVGLPLS 505
++VN L L+
Sbjct: 70 VSVNEYCLDNTSLA 83
Score = 50.1 bits (120), Expect = 5e-08
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 361 LGVVIVESGWGSMLPT---VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 414
LG I+ + PT +VI +L G A R G L GD++++VN L L+
Sbjct: 28 LGFSIL-DYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLA 83
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 55.0 bits (133), Expect = 9e-10
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ ++ +A GAA R G L +GD+++++NGV + + + + + L +
Sbjct: 40 IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASP--TIALLL 94
Score = 51.9 bits (125), Expect = 1e-08
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
+ ++ +A GAA R G L +GD+++++NGV +
Sbjct: 40 IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEA 74
Score = 51.9 bits (125), Expect = 1e-08
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
+ ++ +A GAA R G L +GD+++++NGV +
Sbjct: 40 IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEA 74
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 54.2 bits (131), Expect = 1e-09
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ I + GAA + G+L IGD+++AVN +L + +KN+ + +V L V
Sbjct: 35 IYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSD--MVYLKV 89
Score = 50.8 bits (122), Expect = 2e-08
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
+ I + GAA + G+L IGD+++AVN +L +
Sbjct: 35 IYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDV 69
Score = 50.8 bits (122), Expect = 2e-08
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
+ I + GAA + G+L IGD+++AVN +L +
Sbjct: 35 IYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDV 69
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 55.1 bits (133), Expect = 1e-09
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 45 DEPPKISRTPKMICHVFESDEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAG 101
DE ++ + HV + K LG +V G + + + +
Sbjct: 6 DEFDQLIKNMAQGRHVEV---FELLKPPSGGLGFSVVGLRSENRGEL--GIFVQEIQEGS 60
Query: 102 AAARCGQLNIGDQIIAVNGVSL-VGLPLSTCQTYIKNSKNQTVVKLTV 148
A R G+L DQI+A+NG +L + + ++ +K+ V+L +
Sbjct: 61 VAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKD--TVQLVI 106
Score = 53.1 bits (128), Expect = 5e-09
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 336 GDELQMFAKKELQ----KEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAA 388
DE K Q + + K LG +V G + + + + A
Sbjct: 5 CDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGEL--GIFVQEIQEGSVA 62
Query: 389 ARCGQLNIGDQIIAVNGVSL 408
R G+L DQI+A+NG +L
Sbjct: 63 HRDGRLKETDQILAINGQAL 82
Score = 51.6 bits (124), Expect = 2e-08
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 438 QETPVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 494
+ K LG +V G + + + + A R G+L DQI+A+
Sbjct: 20 HVEVFELLKPPSGGLGFSVVGLRSENRGEL--GIFVQEIQEGSVAHRDGRLKETDQILAI 77
Query: 495 NGVSL 499
NG +L
Sbjct: 78 NGQAL 82
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 54.3 bits (131), Expect = 1e-09
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 62 ESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
V V G G + G P + ++ + G AA ++ GD+++ +NG
Sbjct: 9 SFQYVPVQLQGGAPWGFTLK-GGLEHCEP-LTVSKIEDGGKAALSQKMRTGDELVNINGT 66
Query: 122 SLVGLPLSTCQTYIKNSKNQTVVKLTV 148
L G IK S +KL V
Sbjct: 67 PLYGSRQE-ALILIKGSFRI--LKLIV 90
Score = 49.6 bits (119), Expect = 6e-08
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 348 QKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 407
+ V V G G + G P + ++ + G AA ++ GD+++ +NG
Sbjct: 10 FQYVPVQLQGGAPWGFTLK-GGLEHCEP-LTVSKIEDGGKAALSQKMRTGDELVNINGTP 67
Query: 408 LVG 410
L G
Sbjct: 68 LYG 70
Score = 49.6 bits (119), Expect = 7e-08
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 437 GQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 496
G V V G G + G P + ++ + G AA ++ GD+++ +NG
Sbjct: 8 GSFQYVPVQLQGGAPWGFTLK-GGLEHCEP-LTVSKIEDGGKAALSQKMRTGDELVNING 65
Query: 497 VSLVG 501
L G
Sbjct: 66 TPLYG 70
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 53.9 bits (130), Expect = 2e-09
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 76 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI 135
LG IV G VV+ + P G A R G+L GD I+ + G ++ G+ +
Sbjct: 28 LGFGIV----GGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVL 83
Query: 136 KNSKNQTVVKLTV 148
+N N V++ V
Sbjct: 84 RNCGNS--VRMLV 94
Score = 52.8 bits (127), Expect = 8e-09
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 437 GQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 496
G V + G LG IV G VV+ + P G A R G+L GD I+ + G
Sbjct: 14 GHVEEVELIN-DGSGLGFGIV----GGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGG 68
Query: 497 VSLVGL 502
++ G+
Sbjct: 69 TNVQGM 74
Score = 52.0 bits (125), Expect = 1e-08
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 361 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
LG IV G VV+ + P G A R G+L GD I+ + G ++ G+
Sbjct: 28 LGFGIV----GGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGM 74
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 53.1 bits (128), Expect = 4e-09
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
+V+ + LG IV G G + I+ + G A G+L GDQI++VNGV L
Sbjct: 14 RIVIHRGSTG-LGFNIV--G-GEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 69
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTV 148
+KN+ V +
Sbjct: 70 NASHEQAAIALKNAGQ--TVTIIA 91
Score = 51.5 bits (124), Expect = 1e-08
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 435 LTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 494
+ + +V+ + LG IV G G + I+ + G A G+L GDQI++V
Sbjct: 8 IPREPRRIVIHRGSTG-LGFNIV--G-GEXGEGIFISFILAGGPADLSGELRKGDQILSV 63
Query: 495 NGVSLVGL 502
NGV L
Sbjct: 64 NGVDLRNA 71
Score = 50.8 bits (122), Expect = 3e-08
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+ +V+ + LG IV G G + I+ + G A G+L GDQI++VNGV L
Sbjct: 13 RRIVIHRGSTG-LGFNIV--G-GEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 68
Query: 409 VGL 411
Sbjct: 69 RNA 71
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 52.3 bits (126), Expect = 4e-09
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 12/85 (14%)
Query: 66 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 125
+ + K +G + I ++ +AAR G L I +NG +++G
Sbjct: 8 ITMHKDSTGHVGFIFKNG---------KITSIVKDSSAARNG-LLTEHNICEINGQNVIG 57
Query: 126 LPLSTCQTYIKNSKNQTVVKLTVVP 150
L S + S VV +T++P
Sbjct: 58 LKDSQIADILSTSGT--VVTITIMP 80
Score = 44.2 bits (105), Expect = 3e-06
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 15/86 (17%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+ + + K +G + I ++ +AAR G L I +NG ++
Sbjct: 6 RTITMHKDSTGHVGFIFKNG---------KITSIVKDSSAARNG-LLTEHNICEINGQNV 55
Query: 409 VGLPLSTCQTYIK-----ILMKTMPT 429
+GL S + + + MP
Sbjct: 56 IGLKDSQIADILSTSGTVVTITIMPA 81
Score = 43.1 bits (102), Expect = 9e-06
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ + K +G + I ++ +AAR G L I +NG +++G
Sbjct: 8 ITMHKDSTGHVGFIFKNG---------KITSIVKDSSAARNG-LLTEHNICEINGQNVIG 57
Query: 502 LP 503
L
Sbjct: 58 LK 59
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 53.7 bits (129), Expect = 4e-09
Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
Query: 54 PKMICHVFESDEVVVPKAKG-EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIG 112
+M E +EV + + + LG+ + + I+ + P AA+ G++ G
Sbjct: 11 QEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREG 70
Query: 113 DQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDT 164
D+II +NG+ + + + S+ L + ++ D+
Sbjct: 71 DRIIQINGIEVQNREEAVA---LLTSEENKNFSLLIARPELQLDEGWMDDDS 119
Score = 49.9 bits (119), Expect = 8e-08
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 336 GDELQMFAKKELQKEVVV--PKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQ 393
GD Q ++EL+ E V + LG+ + + I+ + P AA+ G+
Sbjct: 7 GDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGR 66
Query: 394 LNIGDQIIAVNGVSLVG 410
+ GD+II +NG+ +
Sbjct: 67 IREGDRIIQINGIEVQN 83
Score = 49.1 bits (117), Expect = 2e-07
Identities = 14/63 (22%), Positives = 28/63 (44%)
Query: 439 ETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 498
E + + LG+ + + I+ + P AA+ G++ GD+II +NG+
Sbjct: 21 EEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIE 80
Query: 499 LVG 501
+
Sbjct: 81 VQN 83
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 53.6 bits (129), Expect = 5e-09
Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 45 DEPPKISRTPKMICHVFESDEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAG 101
++ + + + + + + LG +V G + + + ++ P
Sbjct: 11 EDFNSVIQQMAQGRQIEY---IDIERPSTGGLGFSVVALRSQNLGKV--DIFVKDVQPGS 65
Query: 102 AAARCGQLNIGDQIIAVNGVSL-VGLPLSTCQTYIKNSKNQTVVKLTVV 149
A R +L DQI+A+N L + ++ + ++L V
Sbjct: 66 VADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTG--SLRLIVA 112
Score = 53.6 bits (129), Expect = 5e-09
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 331 SQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGA 387
E F +Q A+ + + + + LG +V G + + + ++ P
Sbjct: 9 GNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKV--DIFVKDVQPGSV 66
Query: 388 AARCGQLNIGDQIIAVNGVSL 408
A R +L DQI+A+N L
Sbjct: 67 ADRDQRLKENDQILAINHTPL 87
Score = 52.8 bits (127), Expect = 1e-08
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 438 QETPVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 494
Q + + + LG +V G + + + ++ P A R +L DQI+A+
Sbjct: 25 QIEYIDIERPSTGGLGFSVVALRSQNLGKV--DIFVKDVQPGSVADRDQRLKENDQILAI 82
Query: 495 NGVSL 499
N L
Sbjct: 83 NHTPL 87
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 55.0 bits (132), Expect = 5e-09
Identities = 40/193 (20%), Positives = 64/193 (33%), Gaps = 33/193 (17%)
Query: 2 LTFNDRVHKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMI---- 57
L ND + LR Y + D+ VL+ + V E P +I
Sbjct: 16 LIENDAEKDYLY--DVLR--MYHQTM-DVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKH 70
Query: 58 ---------CHVFESDEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAAR 105
+ EV + + E LG+ + E G G + I++L G A
Sbjct: 71 QVEYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCG-----LFISHLIKGGQADS 125
Query: 106 CGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDTK 165
G L +GD+I+ +NG S+ I+ K V + V +
Sbjct: 126 VG-LQVGDEIVRINGYSISSCTHEEVINLIRTEK---TVSIKVRHIGLIPVKSSPDEPLT 181
Query: 166 YQLGFSVQNGVAP 178
+Q V V+
Sbjct: 182 WQ---YVDQFVSE 191
Score = 48.8 bits (116), Expect = 7e-07
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 349 KEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 405
KEV + + E LG+ + E G G + I++L G A G L +GD+I+ +NG
Sbjct: 86 KEVRLDRLHPEGLGLSVRGGLEFGCG-----LFISHLIKGGQADSVG-LQVGDEIVRING 139
Query: 406 VSLVGL 411
S+
Sbjct: 140 YSISSC 145
Score = 47.6 bits (113), Expect = 2e-06
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 442 VVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 498
V + + E LG+ + E G G + I++L G A G L +GD+I+ +NG S
Sbjct: 88 VRLDRLHPEGLGLSVRGGLEFGCG-----LFISHLIKGGQADSVG-LQVGDEIVRINGYS 141
Query: 499 LVGL 502
+
Sbjct: 142 ISSC 145
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 53.1 bits (128), Expect = 6e-09
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 62 ESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
E ++++ K LG IV G G + ++ + G A G+L GD+I++VNGV
Sbjct: 15 EPRKIILHK-GSTGLGFNIV--G-GEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGV 70
Query: 122 SLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+L +K + V +
Sbjct: 71 NLRNATHEQAAAALKRAGQS--VTIVA 95
Score = 50.8 bits (122), Expect = 3e-08
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+++++ K LG IV G G + ++ + G A G+L GD+I++VNGV+L
Sbjct: 17 RKIILHK-GSTGLGFNIV--G-GEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNL 72
Query: 409 VGL 411
Sbjct: 73 RNA 75
Score = 50.4 bits (121), Expect = 4e-08
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 452 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
LG IV G G + ++ + G A G+L GD+I++VNGV+L
Sbjct: 28 LGFNIV--G-GEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNA 75
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 52.8 bits (127), Expect = 6e-09
Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 51 SRTPKMICHVFESDEVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARC 106
S + M ++E V + K G+ + + + ++VI+++ P G A
Sbjct: 3 SGSSGMEEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-- 60
Query: 107 GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
G L D+++ VNG + + S ++ S + + V
Sbjct: 61 GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGK--IAAIVV 100
Score = 47.0 bits (112), Expect = 8e-07
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 348 QKEVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 403
Q V + K G+ + + + ++VI+++ P G A G L D+++ V
Sbjct: 15 QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMV 72
Query: 404 NGVSLVGL 411
NG + +
Sbjct: 73 NGTPMEDV 80
Score = 46.7 bits (111), Expect = 1e-06
Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 435 LTGQETPVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQ 490
+ ++ V + K G+ + + + ++VI+++ P G A G L D+
Sbjct: 11 VIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDR 68
Query: 491 IIAVNGVSLVGL 502
++ VNG + +
Sbjct: 69 VVMVNGTPMEDV 80
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 52.8 bits (127), Expect = 7e-09
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 60 VFESDEVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQI 115
++E V + +A G G+ I + S ++VI+++ G A GQL D++
Sbjct: 5 IWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRV 62
Query: 116 IAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
VNGVS+ + + ++ S K+T+
Sbjct: 63 AMVNGVSMDNVEHAFAVQQLRKSGK--NAKITI 93
Score = 45.8 bits (109), Expect = 2e-06
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 348 QKEVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 403
Q V + +A G G+ I + S ++VI+++ G A GQL D++ V
Sbjct: 8 QHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMV 65
Query: 404 NGVSLVGLP 412
NGVS+ +
Sbjct: 66 NGVSMDNVE 74
Score = 45.1 bits (107), Expect = 3e-06
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 435 LTGQETPVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQ 490
+ ++ V + +A G G+ I + S ++VI+++ G A GQL D+
Sbjct: 4 MIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDR 61
Query: 491 IIAVNGVSLVGLP 503
+ VNGVS+ +
Sbjct: 62 VAMVNGVSMDNVE 74
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 51.6 bits (124), Expect = 1e-08
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIGDQIIAV 118
E+ V K LG I G P + + + P G A+ L GD+II
Sbjct: 4 EIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQA 61
Query: 119 NGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
NG S + + + +K +N V+L +
Sbjct: 62 NGYSFINIEHGQAVSLLKTFQN--TVELII 89
Score = 47.0 bits (112), Expect = 5e-07
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 13/99 (13%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIGDQIIA 402
E+ V K LG I G P + + + P G A+ L GD+II
Sbjct: 3 MEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQ 60
Query: 403 VNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQETP 441
NG S + + + +L + L+ +E
Sbjct: 61 ANGYSFINI---EHGQAVSLLKTF--QNTVELIIVREVS 94
Score = 44.7 bits (106), Expect = 3e-06
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIGDQIIAVN 495
+ V K LG I G P + + + P G A+ L GD+II N
Sbjct: 5 IRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQAN 62
Query: 496 GVSLVGL 502
G S + +
Sbjct: 63 GYSFINI 69
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 52.0 bits (125), Expect = 1e-08
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 66 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 125
V + K G LG I G S L + I+ + P A R G L GDQ++AVN V
Sbjct: 19 VTLKKPPGAQLGFNIR-GGKASQLG-IFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQD 75
Query: 126 LPLSTCQTYIKNSKNQTVVKLTV 148
+ S +K ++ + + V
Sbjct: 76 IEHSKAVEILKTARE---ISMRV 95
Score = 49.7 bits (119), Expect = 6e-08
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 344 KKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 403
+ L + V + K G LG I G S L + I+ + P A R G L GDQ++AV
Sbjct: 12 TQFLPRIVTLKKPPGAQLGFNIR-GGKASQLG-IFISKVIPDSDAHRAG-LQEGDQVLAV 68
Query: 404 NGVSLVGL 411
N V +
Sbjct: 69 NDVDFQDI 76
Score = 48.9 bits (117), Expect = 1e-07
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
V + K G LG I G S L + I+ + P A R G L GDQ++AVN V
Sbjct: 19 VTLKKPPGAQLGFNIR-GGKASQLG-IFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQD 75
Query: 502 L 502
+
Sbjct: 76 I 76
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 51.7 bits (124), Expect = 1e-08
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 59 HVFESDEVVVPKAKGEILGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIG 112
H E+ V K LG I G P + + + P G A+ L G
Sbjct: 6 HELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPG 63
Query: 113 DQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
D+II NG S + + + +K +N V+L +
Sbjct: 64 DKIIQANGYSFINIEHGQAVSLLKTFQN--TVELII 97
Score = 47.0 bits (112), Expect = 5e-07
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 348 QKEVVVPKAKGEILGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIGDQII 401
++E+ V K LG I G P + + + P G A+ L GD+II
Sbjct: 10 KQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKII 67
Query: 402 AVNGVSLVGL 411
NG S + +
Sbjct: 68 QANGYSFINI 77
Score = 45.9 bits (109), Expect = 2e-06
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 437 GQETPVVVPKAKGEILGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIGDQ 490
+ + V K LG I G P + + + P G A+ L GD+
Sbjct: 8 LAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDK 65
Query: 491 IIAVNGVSLVGL 502
II NG S + +
Sbjct: 66 IIQANGYSFINI 77
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 51.6 bits (124), Expect = 1e-08
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
V V K+ LG + G L + ++ + +A R G L +GD+I VNG+SL
Sbjct: 13 SVRVEKSPAGRLGFSVR-GGSEHGLG-IFVSKVEEGSSAERAG-LCVGDKITEVNGLSLE 69
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTV 148
+ + + +S + + V
Sbjct: 70 STTMGSAVKVLTSSSR---LHMMV 90
Score = 48.1 bits (115), Expect = 2e-07
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
V V K+ LG + G L + ++ + +A R G L +GD+I VNG+SL
Sbjct: 12 HSVRVEKSPAGRLGFSVR-GGSEHGLG-IFVSKVEEGSSAERAG-LCVGDKITEVNGLSL 68
Query: 409 VGL 411
Sbjct: 69 EST 71
Score = 47.7 bits (114), Expect = 3e-07
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
V V K+ LG + G L + ++ + +A R G L +GD+I VNG+SL
Sbjct: 14 VRVEKSPAGRLGFSVR-GGSEHGLG-IFVSKVEEGSSAERAG-LCVGDKITEVNGLSLES 70
Query: 502 LPLSTCQTYIKVNHHL 517
+ + + + L
Sbjct: 71 TTMGSAVKVLTSSSRL 86
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 50.8 bits (122), Expect = 2e-08
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 64 DEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 123
D V G + G +P + I+ L P G AA+ G + +GD +++++G +
Sbjct: 3 DSFKVVLEGPAPWGFRLQ-GGKDFNVP-LSISRLTPGGKAAQAG-VAVGDWVLSIDGENA 59
Query: 124 VGLPLSTCQTYIKNSKNQTVVKLTV 148
L Q I+ + + L +
Sbjct: 60 GSLTHIEAQNKIRACGER--LSLGL 82
Score = 43.5 bits (103), Expect = 7e-06
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 421
+ I+ L P G AA+ G + +GD +++++G + L Q I+
Sbjct: 29 LSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIR 72
Score = 43.5 bits (103), Expect = 7e-06
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+ I+ L P G AA+ G + +GD +++++G + L Q I+
Sbjct: 29 LSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIR 72
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 51.7 bits (124), Expect = 2e-08
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 62 ESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
+V KG+ +G+ + G + +A + AA+ G L GDQI+ VN V
Sbjct: 27 RPSMKLVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNV 81
Query: 122 SLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ ++ + V +
Sbjct: 82 DFTNIIREEAVLFLLDLPKGEEVTILA 108
Score = 48.3 bits (115), Expect = 3e-07
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 438 QETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 497
+ + +V KG+ +G+ + G + +A + AA+ G L GDQI+ VN V
Sbjct: 27 RPSMKLVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNV 81
Query: 498 SLVGL 502
+
Sbjct: 82 DFTNI 86
Score = 46.3 bits (110), Expect = 2e-06
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+V KG+ +G+ + G + +A + AA+ G L GDQI+ VN V
Sbjct: 29 SMKLVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 83
Query: 409 VGLPLSTCQTYIKILMKTMPTSMFRLL 435
+ + + L+ +L
Sbjct: 84 TNI---IREEAVLFLLDLPKGEEVTIL 107
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 51.3 bits (123), Expect = 2e-08
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
+V+ + LG IV G G + I+ + G A G+L GDQI++VNGV L
Sbjct: 17 RIVIHR-GSTGLGFNIV--G-GEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 72
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTV 148
+KN+ V +
Sbjct: 73 NASHEQAAIALKNAGQ--TVTIIA 94
Score = 51.3 bits (123), Expect = 2e-08
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 435 LTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 494
+ + +V+ + LG IV G G + I+ + G A G+L GDQI++V
Sbjct: 11 IPREPRRIVIHR-GSTGLGFNIV--G-GEDGEGIFISFILAGGPADLSGELRKGDQILSV 66
Query: 495 NGVSLVGL 502
NGV L
Sbjct: 67 NGVDLRNA 74
Score = 50.5 bits (121), Expect = 5e-08
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+ +V+ + LG IV G G + I+ + G A G+L GDQI++VNGV L
Sbjct: 16 RRIVIHR-GSTGLGFNIV--G-GEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 71
Query: 409 VGL 411
Sbjct: 72 RNA 74
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 50.5 bits (121), Expect = 2e-08
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
P + +A++ A L + D+IIA+N + + ++ + + V
Sbjct: 28 PGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDV 85
Score = 43.6 bits (103), Expect = 7e-06
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 346 ELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 405
+++ + K G I W P + +A++ A L + D+IIA+N
Sbjct: 4 DMRISINQTPGKSLDFGFTIK---WDI--PGIFVASVEAGSPAEFSQ-LQVDDEIIAINN 57
Query: 406 VSLVGLPLSTCQTYIK 421
+ +
Sbjct: 58 TKFSYNDSKEWEEAMA 73
Score = 42.8 bits (101), Expect = 1e-05
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
P + +A++ A L + D+IIA+N + +
Sbjct: 28 PGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMA 73
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 51.3 bits (123), Expect = 2e-08
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
+V + LG I SG + I+++ P +A G L IGDQI+ VNGV
Sbjct: 18 KVFISLVGSRGLGCSIS-SGPIQKPG-IFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFS 74
Query: 125 GLPLSTCQTYIKNSKNQTVV 144
L +K+S++ T+
Sbjct: 75 NLDHKEAVNVLKSSRSLTIS 94
Score = 50.9 bits (122), Expect = 3e-08
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 437 GQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 496
+E V + LG I SG + I+++ P +A G L IGDQI+ VNG
Sbjct: 14 NKEKKVFISLVGSRGLGCSIS-SGPIQKPG-IFISHVKPGSLSAEVG-LEIGDQIVEVNG 70
Query: 497 VSLVGL 502
V L
Sbjct: 71 VDFSNL 76
Score = 49.8 bits (119), Expect = 8e-08
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 343 AKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 402
++ +K+V + LG I SG + I+++ P +A G L IGDQI+
Sbjct: 11 NRENKEKKVFISLVGSRGLGCSIS-SGPIQKPG-IFISHVKPGSLSAEVG-LEIGDQIVE 67
Query: 403 VNGVSLVGL 411
VNGV L
Sbjct: 68 VNGVDFSNL 76
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 49.7 bits (119), Expect = 4e-08
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 93 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCA 152
+I +L G A R G + +G +II +NG S+V P + N+ + + +P A
Sbjct: 34 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVG--EIHMKTMPAA 90
Score = 45.5 bits (108), Expect = 2e-06
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 378 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK-----ILMKTMPTS 430
+I +L G A R G + +G +II +NG S+V P + I MKTMP +
Sbjct: 34 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAA 90
Score = 41.7 bits (98), Expect = 3e-05
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 469 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
+I +L G A R G + +G +II +NG S+V P
Sbjct: 34 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATP 67
Score = 35.9 bits (83), Expect = 0.004
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 150 PCAPVVEVKIKRPDTKYQLGFSVQNGV 176
V V I+RPD +YQLGFSVQNG+
Sbjct: 8 TMGNVTTVLIRRPDLRYQLGFSVQNGI 34
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 49.7 bits (119), Expect = 6e-08
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 62 ESDEVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 120
E +V + K + E G + + G + V + N+ PAG G L D+++ VN
Sbjct: 6 ELHKVTLYKDSGMEDFGFSVAD---GLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNH 61
Query: 121 VSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
V I S N + L +
Sbjct: 62 VRTRDFDCCLVVPLIAESGN--KLDLVI 87
Score = 45.8 bits (109), Expect = 1e-06
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 346 ELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 405
EL K + + E G + + G + V + N+ PAG G L D+++ VN
Sbjct: 6 ELHKVTLYKDSGMEDFGFSVAD---GLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNH 61
Query: 406 VSLVGLPLSTCQTYIKIL 423
V C + ++
Sbjct: 62 VRTRDF---DCCLVVPLI 76
Score = 45.0 bits (107), Expect = 2e-06
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 446 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
+ E G + + G + V + N+ PAG G L D+++ VN V
Sbjct: 15 DSGMEDFGFSVAD---GLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFD 68
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 49.7 bits (119), Expect = 7e-08
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
P ++ + P GAA R G + GD+I+ VNGV++ G I+ + + + LTV+
Sbjct: 43 PLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKE--LILTVL 99
Query: 150 P 150
Sbjct: 100 S 100
Score = 42.7 bits (101), Expect = 2e-05
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
P ++ + P GAA R G + GD+I+ VNGV++ G
Sbjct: 43 PLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGA 78
Score = 42.7 bits (101), Expect = 2e-05
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
P ++ + P GAA R G + GD+I+ VNGV++ G
Sbjct: 43 PLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGA 78
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 49.7 bits (119), Expect = 7e-08
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ I++L G A++ + IGD +++++G+S G+ Q IK + +T+
Sbjct: 31 LTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGS--LNMTL 84
Score = 42.7 bits (101), Expect = 2e-05
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 421
+ I++L G A++ + IGD +++++G+S G+ Q IK
Sbjct: 31 LTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIK 74
Score = 42.7 bits (101), Expect = 2e-05
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+ I++L G A++ + IGD +++++G+S G+ Q IK
Sbjct: 31 LTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIK 74
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 49.2 bits (118), Expect = 8e-08
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 63 SDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 122
S + V A G I G P +++ + G A L GD I+A+NG S
Sbjct: 5 SSGLTVDVAGPAPWGFRIS-GGRDFHTP-IIVTKVTERGKAEAAD-LRPGDIIVAINGQS 61
Query: 123 LVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ + Q+ I+ S + ++L +
Sbjct: 62 AENMLHAEAQSKIRQSASP--LRLQL 85
Score = 41.9 bits (99), Expect = 2e-05
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 421
+++ + G A L GD I+A+NG S + + Q+ I+
Sbjct: 32 IIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIR 75
Score = 41.9 bits (99), Expect = 2e-05
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+++ + G A L GD I+A+NG S + + Q+ I+
Sbjct: 32 IIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIR 75
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 49.3 bits (118), Expect = 9e-08
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+VI + P AA L GD I+A++G + + Q IK + Q + L +
Sbjct: 31 LVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQ--LCLKI 84
Score = 42.3 bits (100), Expect = 2e-05
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 421
+VI + P AA L GD I+A++G + + Q IK
Sbjct: 31 LVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIK 74
Score = 42.3 bits (100), Expect = 2e-05
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+VI + P AA L GD I+A++G + + Q IK
Sbjct: 31 LVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIK 74
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 48.8 bits (117), Expect = 9e-08
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ I++L G AA+ + IGD +++++G++ G+ Q IK + +T+
Sbjct: 29 LTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGS--LNMTL 82
Score = 42.3 bits (100), Expect = 2e-05
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 421
+ I++L G AA+ + IGD +++++G++ G+ Q IK
Sbjct: 29 LTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIK 72
Score = 42.3 bits (100), Expect = 2e-05
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+ I++L G AA+ + IGD +++++G++ G+ Q IK
Sbjct: 29 LTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIK 72
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 48.8 bits (117), Expect = 9e-08
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ I+ + P AA+ L+ GD ++A++GV+ + Q IK++ + LT+
Sbjct: 27 LTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYN--LSLTL 80
Score = 42.2 bits (100), Expect = 2e-05
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH 516
+ I+ + P AA+ L+ GD ++A++GV+ + Q IK +
Sbjct: 27 LTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASY 74
Score = 41.5 bits (98), Expect = 3e-05
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 421
+ I+ + P AA+ L+ GD ++A++GV+ + Q IK
Sbjct: 27 LTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIK 70
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 48.8 bits (117), Expect = 1e-07
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ I+ + AA L GD I A+NG S + Q IK + + L+V
Sbjct: 34 LTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHDH--LTLSV 87
Score = 41.5 bits (98), Expect = 4e-05
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 441 PVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 500
P V G +V G P + I+ + AA L GD I A+NG S
Sbjct: 9 PHSVTLRGPSPWGFRLV-GGRDFSAP-LTISRVHAGSKAALAA-LCPGDLIQAINGESTE 65
Query: 501 GLPLSTCQTYIK 512
+ Q IK
Sbjct: 66 LMTHLEAQNRIK 77
Score = 41.5 bits (98), Expect = 4e-05
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 421
+ I+ + AA L GD I A+NG S + Q IK
Sbjct: 34 LTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIK 77
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 48.5 bits (116), Expect = 1e-07
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPC 151
+ I+ + P AA L IGD I A++G + + Q IK + + LTV
Sbjct: 29 LAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGCTDN--LTLTV--- 82
Query: 152 APVVEVKIKRPDTKYQL 168
R + + L
Sbjct: 83 --------ARSEHESDL 91
Score = 41.2 bits (97), Expect = 4e-05
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 421
+ I+ + P AA L IGD I A++G + + Q IK
Sbjct: 29 LAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIK 72
Score = 41.2 bits (97), Expect = 4e-05
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+ I+ + P AA L IGD I A++G + + Q IK
Sbjct: 29 LAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIK 72
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 48.5 bits (116), Expect = 2e-07
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ I+ ++ G AAR G + +GD+++ VNGV+L G ++ + V++ V
Sbjct: 48 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGT--AVQMRV 101
Score = 45.8 bits (109), Expect = 2e-06
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
+ I+ ++ G AAR G + +GD+++ VNGV+L G
Sbjct: 48 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGA 81
Score = 45.8 bits (109), Expect = 2e-06
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
+ I+ ++ G AAR G + +GD+++ VNGV+L G
Sbjct: 48 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGA 81
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 48.0 bits (115), Expect = 2e-07
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ I+ ++ G AAR G + +GD+++ VNGV+L G ++ + V++ V
Sbjct: 36 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGT--AVQMRV 89
Score = 45.4 bits (108), Expect = 2e-06
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
+ I+ ++ G AAR G + +GD+++ VNGV+L G
Sbjct: 36 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGA 69
Score = 45.4 bits (108), Expect = 2e-06
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
+ I+ ++ G AAR G + +GD+++ VNGV+L G
Sbjct: 36 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGA 69
>2dyq_A Amyloid beta A4 precursor protein-binding family 3;
phosphotyrosine-interaction domain (PTB/PID alzheimer'S
disease, structural genomics, NPPSFA; 3.10A {Homo
sapiens}
Length = 144
Score = 49.5 bits (118), Expect = 2e-07
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 13/96 (13%)
Query: 217 VDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISR 276
D ++ I + +E + +R +++I D ++ +
Sbjct: 61 SDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFG----LIADLGRQ------ 110
Query: 277 TPKMICHVFESDE-AQFIAQSIGQAFQVAYMEFLKA 311
C F A +++++ A V Y + L A
Sbjct: 111 --SFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVA 144
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 48.2 bits (115), Expect = 2e-07
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
E + K +G+ G + +I + A + G L GD+++ +NGV +
Sbjct: 4 ESKLSKQEGQNYGFFLRI---EKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVD 59
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDTK 165
+ ++ S N V L V+ + + D K
Sbjct: 60 KEEHAQVVELVRKSGNS--VTLLVLDGDSYEKAVKNQVDLK 98
Score = 41.7 bits (98), Expect = 5e-05
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+E + K +G+ G + +I + A + G L GD+++ +NGV +
Sbjct: 3 RESKLSKQEGQNYGFFLRI---EKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFV 58
Query: 409 VGLP 412
Sbjct: 59 DKEE 62
Score = 40.1 bits (94), Expect = 2e-04
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ K +G+ G + +I + A + G L GD+++ +NGV +
Sbjct: 5 SKLSKQEGQNYGFFLRI---EKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDK 60
Query: 502 LP 503
Sbjct: 61 EE 62
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 47.7 bits (114), Expect = 2e-07
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+++ +A G A L GD I+A+NG S G+ + Q+ I+ S + ++L +
Sbjct: 28 IMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSP--LRLQL 81
Score = 41.1 bits (97), Expect = 5e-05
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 441 PVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 500
+ V A G I G P +++ +A G A L GD I+A+NG S
Sbjct: 3 ALTVDVAGPAPWGFRIT-GGRDFHTP-IMVTKVAERGKAKDAD-LRPGDIIVAINGESAE 59
Query: 501 GLPLSTCQTYIK 512
G+ + Q+ I+
Sbjct: 60 GMLHAEAQSKIR 71
Score = 41.1 bits (97), Expect = 5e-05
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 421
+++ +A G A L GD I+A+NG S G+ + Q+ I+
Sbjct: 28 IMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIR 71
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 48.2 bits (115), Expect = 3e-07
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
E + K +G+ G + +I + A + G L GD+++ +NGV +
Sbjct: 16 ECKLSKQEGQNYGFFLRI---EKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVD 71
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVP 150
+ ++ S N V L V+
Sbjct: 72 KEEHAQVVELVRKSGNS--VTLLVLD 95
Score = 42.1 bits (99), Expect = 4e-05
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+E + K +G+ G + +I + A + G L GD+++ +NGV +
Sbjct: 15 RECKLSKQEGQNYGFFLRI---EKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFV 70
Query: 409 VGLP 412
Sbjct: 71 DKEE 74
Score = 40.5 bits (95), Expect = 1e-04
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ K +G+ G + +I + A + G L GD+++ +NGV +
Sbjct: 17 CKLSKQEGQNYGFFLRI---EKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDK 72
Query: 502 LP 503
Sbjct: 73 EE 74
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 47.3 bits (113), Expect = 4e-07
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
I + P A + G L GD+++ VNG ++ + I+ + N V+L VV
Sbjct: 27 LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNA--VRLLVV 83
Query: 150 P 150
Sbjct: 84 D 84
Score = 40.7 bits (96), Expect = 6e-05
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 412
I + P A + G L GD+++ VNG ++
Sbjct: 27 LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKET 63
Score = 40.7 bits (96), Expect = 6e-05
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
I + P A + G L GD+++ VNG ++
Sbjct: 27 LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKET 63
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 47.4 bits (113), Expect = 4e-07
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 66 VVVPKAKGEILGVVIVESG-----WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 120
+ + K + G I G + +A + + A G L GD I +VNG
Sbjct: 8 LTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNG 66
Query: 121 VSLVGLPLSTCQTYIKNSKNQTVVKLTVVP 150
+++ G+ IK S N ++L +
Sbjct: 67 LNVEGIRHREIVDIIKASGNV--LRLETLY 94
Score = 42.4 bits (100), Expect = 2e-05
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 436 TGQETPVVVPKAKGEILGVVIVESG-----WGSMLPTVVIANLAPAGAAARCGQLNIGDQ 490
+ Q + + K + G I G + +A + + A G L GD
Sbjct: 2 SQQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDT 60
Query: 491 IIAVNGVSLVGLP 503
I +VNG+++ G+
Sbjct: 61 IASVNGLNVEGIR 73
Score = 41.2 bits (97), Expect = 5e-05
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 349 KEVVVPKAKGEILGVVIVESG-----WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 403
K + + K + G I G + +A + + A G L GD I +V
Sbjct: 6 KVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASV 64
Query: 404 NGVSLVGLP 412
NG+++ G+
Sbjct: 65 NGLNVEGIR 73
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 48.0 bits (114), Expect = 4e-07
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 89 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ T+ + + G A G L GD+II VNG S++G S I+NS ++L+V
Sbjct: 60 MDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDT--TLELSV 116
Query: 149 VP 150
+P
Sbjct: 117 MP 118
Score = 41.4 bits (97), Expect = 8e-05
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 335 FGDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQL 394
FG L+ F + + E + + T+ + + G A G L
Sbjct: 21 FGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-L 79
Query: 395 NIGDQIIAVNGVSLVGLP 412
GD+II VNG S++G
Sbjct: 80 CTGDRIIKVNGESVIGKT 97
Score = 40.7 bits (95), Expect = 1e-04
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 438 QETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 497
E+ + E + + T+ + + G A G L GD+II VNG
Sbjct: 33 PESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGE 91
Query: 498 SLVGLP 503
S++G
Sbjct: 92 SVIGKT 97
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 47.0 bits (112), Expect = 5e-07
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPC 151
+ + + G+A G+L GDQI+ +N L ++ +++ + +TVV C
Sbjct: 33 LTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLSWERAVDILREAEDS--LSITVVRC 88
Query: 152 AP 153
Sbjct: 89 TS 90
Score = 40.0 bits (94), Expect = 1e-04
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 436 TGQETPVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 494
+G V + K G I ES + + + G+A G+L GDQI+ +
Sbjct: 6 SGVRHTVKIDKDTLLQDYGFHISES------LPLTVVAVTAGGSA--HGKLFPGDQILQM 57
Query: 495 NGVSLVGLPLSTCQTYIK 512
N L ++
Sbjct: 58 NNEPAEDLSWERAVDILR 75
Score = 39.3 bits (92), Expect = 2e-04
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 421
+ + + G+A G+L GDQI+ +N L ++
Sbjct: 33 LTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLSWERAVDILR 75
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 46.9 bits (112), Expect = 5e-07
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
P I + G A G L D II VNGV+++ P I++S V L V
Sbjct: 27 PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKN--VTLLVC 83
Query: 150 P 150
Sbjct: 84 G 84
Score = 41.5 bits (98), Expect = 4e-05
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 412
P I + G A G L D II VNGV+++ P
Sbjct: 27 PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEP 63
Score = 41.5 bits (98), Expect = 4e-05
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
P I + G A G L D II VNGV+++ P
Sbjct: 27 PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEP 63
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 47.0 bits (112), Expect = 6e-07
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
V+ ++ A G L GD I +NG S++GL + S N+ + L
Sbjct: 34 VHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGNK--ISLRTT 90
Query: 150 P 150
Sbjct: 91 A 91
Score = 39.3 bits (92), Expect = 2e-04
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 347 LQKEVVVPKAKG----EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 402
++ +V+ + + + + V+ ++ A G L GD I
Sbjct: 2 MRPPIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITH 60
Query: 403 VNGVSLVGLP 412
+NG S++GL
Sbjct: 61 INGESVLGLV 70
Score = 38.5 bits (90), Expect = 5e-04
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 441 PVVVPKAKG----EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 496
P+V+ + + + + V+ ++ A G L GD I +NG
Sbjct: 5 PIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHING 63
Query: 497 VSLVGLP 503
S++GL
Sbjct: 64 ESVLGLV 70
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 46.5 bits (111), Expect = 6e-07
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
P I ++ P AAR G L D++I VNG ++ GL + IK +++ +L VV
Sbjct: 28 PGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDE--ARLLVV 84
Query: 150 P 150
Sbjct: 85 G 85
Score = 42.3 bits (100), Expect = 2e-05
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 412
P I ++ P AAR G L D++I VNG ++ GL
Sbjct: 28 PGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLR 64
Score = 42.3 bits (100), Expect = 2e-05
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
P I ++ P AAR G L D++I VNG ++ GL
Sbjct: 28 PGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLR 64
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 47.0 bits (112), Expect = 7e-07
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 62 ESDEVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 117
E V + +AK LG I E G G + ++ + P A + G L +GDQI+
Sbjct: 8 EVRLVSLRRAKAHEGLGFSIRGGSEHGVG-----IYVSLVEPGSLAEKEG-LRVGDQILR 61
Query: 118 VNGVSLVGLPLSTCQTYIKNSKNQ--TVVKLTVVP 150
VN SL + + +K SK +V +
Sbjct: 62 VNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRIS 96
Score = 44.6 bits (106), Expect = 3e-06
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 436 TGQETPVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQI 491
+G+ V + +AK LG I E G G + ++ + P A + G L +GDQI
Sbjct: 6 SGEVRLVSLRRAKAHEGLGFSIRGGSEHGVG-----IYVSLVEPGSLAEKEG-LRVGDQI 59
Query: 492 IAVNGVSLVGL 502
+ VN SL +
Sbjct: 60 LRVNDKSLARV 70
Score = 44.3 bits (105), Expect = 6e-06
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 349 KEVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 404
+ V + +AK LG I E G G + ++ + P A + G L +GDQI+ VN
Sbjct: 10 RLVSLRRAKAHEGLGFSIRGGSEHGVG-----IYVSLVEPGSLAEKEG-LRVGDQILRVN 63
Query: 405 GVSLVGL 411
SL +
Sbjct: 64 DKSLARV 70
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 46.2 bits (110), Expect = 9e-07
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPC 151
V + + G A R G L D ++ +N + I++ ++ + L V
Sbjct: 26 VRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSE--IILLVWRM 82
Query: 152 APVVEVKIKRPD 163
P V+ PD
Sbjct: 83 VPQVK---PGPD 91
Score = 39.3 bits (92), Expect = 2e-04
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 412
V + + G A R G L D ++ +N +
Sbjct: 26 VRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWK 60
Score = 39.3 bits (92), Expect = 2e-04
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
V + + G A R G L D ++ +N +
Sbjct: 26 VRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWK 60
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 46.2 bits (110), Expect = 1e-06
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 76 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI 135
G ++ E P + + P A + G + GD+++AV G S+ GL + I
Sbjct: 16 FGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRI 74
Query: 136 KNSKNQTVVKLTVVP 150
+ + V LTVV
Sbjct: 75 QGQGSC--VSLTVVD 87
Score = 42.3 bits (100), Expect = 2e-05
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 361 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 412
G ++ E P + + P A + G + GD+++AV G S+ GL
Sbjct: 16 FGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLG 66
Score = 42.3 bits (100), Expect = 2e-05
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 452 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
G ++ E P + + P A + G + GD+++AV G S+ GL
Sbjct: 16 FGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLG 66
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 46.4 bits (110), Expect = 1e-06
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
+ ++ G A R G L +GD +I VNG ++V + I+ N + + VV
Sbjct: 45 ALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNT--LMVKVV 101
Query: 150 PCAPVVEV 157
++
Sbjct: 102 MVTRHPDM 109
Score = 38.3 bits (89), Expect = 7e-04
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 348 QKEVVVPKAKGEILGVVIVES----------GWGSMLPTVVIANLAPAGAAARCGQLNIG 397
+K V++ K E G V+ + + + ++ G A R G L +G
Sbjct: 8 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMG 66
Query: 398 DQIIAVNGVSLVGL 411
D +I VNG ++V +
Sbjct: 67 DFLIEVNGQNVVKV 80
Score = 38.3 bits (89), Expect = 8e-04
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 438 QETPVVVPKAKGEILGVVIVES----------GWGSMLPTVVIANLAPAGAAARCGQLNI 487
+E V++ K E G V+ + + + ++ G A R G L +
Sbjct: 7 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRM 65
Query: 488 GDQIIAVNGVSLVGL 502
GD +I VNG ++V +
Sbjct: 66 GDFLIEVNGQNVVKV 80
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 46.4 bits (110), Expect = 1e-06
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 62 ESDEVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 120
V +P KG G I +S G + ++ + C L GD I +
Sbjct: 10 AGLLVTIPLIKGPKGFGFAIADSPTGQKVKMIL--------DSQWCQGLQKGDIIKEIYH 61
Query: 121 VSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDT 164
++ L +K V L ++ P K + +
Sbjct: 62 QNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKMGS 105
Score = 41.4 bits (97), Expect = 7e-05
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 11/77 (14%)
Query: 428 PTSMFRLLTGQETPVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLN 486
+ G + + K KG G I +S G + ++ + C L
Sbjct: 2 AMATLYKKAGLLVTIPLIKGPKG--FGFAIADSPTGQKVKMIL--------DSQWCQGLQ 51
Query: 487 IGDQIIAVNGVSLVGLP 503
GD I + ++ L
Sbjct: 52 KGDIIKEIYHQNVQNLT 68
Score = 41.0 bits (96), Expect = 9e-05
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 349 KEVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 407
V +P KG G I +S G + ++ + C L GD I + +
Sbjct: 12 LLVTIPLIKGPKGFGFAIADSPTGQKVKMIL--------DSQWCQGLQKGDIIKEIYHQN 63
Query: 408 LVGLPLSTCQTYIKILMKTMPTSMFRLL 435
+ L T +++L + + LL
Sbjct: 64 VQNL---THLQVVEVLKQFPVGADVPLL 88
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 45.3 bits (108), Expect = 1e-06
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVP 150
V++ + A G L GDQI+AVN +++ I V+ + +
Sbjct: 25 CVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSG--VLHMVIAE 80
Score = 39.9 bits (94), Expect = 1e-04
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 412
V++ + A G L GDQI+AVN +++
Sbjct: 25 CVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKAS 59
Score = 39.9 bits (94), Expect = 1e-04
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
V++ + A G L GDQI+AVN +++
Sbjct: 25 CVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKAS 59
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 46.0 bits (109), Expect = 2e-06
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
V + L P +A+ G GD I+++ V L LS +K+ +++ VV
Sbjct: 46 VQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDE-IEMKVV 101
Score = 40.2 bits (94), Expect = 1e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
V + L P +A+ G GD I+++ V L
Sbjct: 46 VQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWL 79
Score = 40.2 bits (94), Expect = 1e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
V + L P +A+ G GD I+++ V L
Sbjct: 46 VQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWL 79
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 45.5 bits (108), Expect = 2e-06
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
V + ++ P G A R G + D +I VNG ++ +K S ++ V +V
Sbjct: 34 VYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKSGSR--VMFLLV 88
Score = 41.6 bits (98), Expect = 5e-05
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
V + ++ P G A R G + D +I VNG ++
Sbjct: 34 VYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDA 67
Score = 41.6 bits (98), Expect = 5e-05
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
V + ++ P G A R G + D +I VNG ++
Sbjct: 34 VYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDA 67
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 45.2 bits (107), Expect = 2e-06
Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 65 EVVVPKAKGEILGVVIV-----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 119
V V K E G I S +I + A G L GD + +N
Sbjct: 18 LVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANIN 76
Query: 120 GVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
GVS G I++S N + + +
Sbjct: 77 GVSTEGFTYKQVVDLIRSSGNL--LTIETL 104
Score = 41.3 bits (97), Expect = 6e-05
Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 349 KEVVVPKAKGEILGVVIV-----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 403
K V V K E G I S +I + A G L GD + +
Sbjct: 17 KLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANI 75
Query: 404 NGVSLVGLP 412
NGVS G
Sbjct: 76 NGVSTEGFT 84
Score = 40.5 bits (95), Expect = 1e-04
Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Query: 438 QETPVVVPKAKGEILGVVIV-----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 492
Q V V K E G I S +I + A G L GD +
Sbjct: 15 QRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLA 73
Query: 493 AVNGVSLVGLP 503
+NGVS G
Sbjct: 74 NINGVSTEGFT 84
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 45.8 bits (108), Expect = 3e-06
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 66 VVVPKAKGEILGVVIV----ESGWGSMLPT------VVIANLAPAGAAARCGQLNIGDQI 115
+ + + ILG I + + + + ++ G A G L IGD+I
Sbjct: 30 HKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKI 88
Query: 116 IAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ VNG + + + + + VV+L V
Sbjct: 89 MQVNGWDMTMVTHDQARKRLTKRSEE-VVRLLV 120
Score = 41.6 bits (97), Expect = 1e-04
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 12/100 (12%)
Query: 323 MDYQEVLNSQEIFGDELQMFAKKELQKEVV-VPKAKGEILGVVIV----ESGWGSMLPT- 376
M + +S G E F + E+ + + + ILG I + +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSED 60
Query: 377 -----VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
+ + ++ G A G L IGD+I+ VNG + +
Sbjct: 61 KTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMV 99
Score = 40.4 bits (94), Expect = 3e-04
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 442 VVVPKAKGEILGVVIV----ESGWGSMLPT------VVIANLAPAGAAARCGQLNIGDQI 491
+ + + ILG I + + + + ++ G A G L IGD+I
Sbjct: 30 HKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKI 88
Query: 492 IAVNGVSLVGL 502
+ VNG + +
Sbjct: 89 MQVNGWDMTMV 99
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 44.6 bits (106), Expect = 4e-06
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
P I ++ P A G L D+I+ VNGV + G + I+ ++ KL VV
Sbjct: 33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDE--TKLLVV 89
Query: 150 P 150
Sbjct: 90 D 90
Score = 40.4 bits (95), Expect = 1e-04
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
P I ++ P A G L D+I+ VNGV + G
Sbjct: 33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGK 68
Score = 40.4 bits (95), Expect = 1e-04
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
P I ++ P A G L D+I+ VNGV + G
Sbjct: 33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGK 68
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 44.8 bits (106), Expect = 4e-06
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPC 151
V + L P +A+ G GD I+++ GV L +S +K+ + V++ VV
Sbjct: 38 VQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEE-VEMKVVSL 95
Query: 152 APVVEVKIKRPDT 164
+
Sbjct: 96 LDSTSSMHNKSGP 108
Score = 39.0 bits (91), Expect = 4e-04
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 412
V + L P +A+ G GD I+++ GV L
Sbjct: 38 VQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLT 72
Score = 39.0 bits (91), Expect = 4e-04
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
V + L P +A+ G GD I+++ GV L
Sbjct: 38 VQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLT 72
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 45.2 bits (107), Expect = 4e-06
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
V V K E LG+ IV + ++ + A + G L GDQ++ NG++L
Sbjct: 22 HVKVQKG-SEPLGISIV----SGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLR 75
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDT 164
+ I + + + V ++
Sbjct: 76 SATEQQARLIIGQQCD--TITILAQYNPHVHQLSSHSRSG 113
Score = 44.0 bits (104), Expect = 1e-05
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 13/100 (13%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+ V V K E LG+ IV + ++ + A + G L GDQ++ NG++L
Sbjct: 21 RHVKVQKG-SEPLGISIV----SGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINL 74
Query: 409 VGLP-------LSTCQTYIKILMKTMPTSMFRLLTGQETP 441
+ I IL + P + P
Sbjct: 75 RSATEQQARLIIGQQCDTITILAQYNPHVHQLSSHSRSGP 114
Score = 43.2 bits (102), Expect = 2e-05
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 433 RLLTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 492
R + V V K E LG+ IV + ++ + A + G L GDQ++
Sbjct: 14 RPYVEEPRHVKVQKG-SEPLGISIV----SGEKGGIYVSKVTVGSIAHQAG-LEYGDQLL 67
Query: 493 AVNGVSLVGL 502
NG++L
Sbjct: 68 EFNGINLRSA 77
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 44.7 bits (106), Expect = 4e-06
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVP 150
+I ++ P A G L D ++AVNG S+ L I+ +Q L V+
Sbjct: 32 QIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQ--TTLLVLD 87
Score = 39.7 bits (93), Expect = 2e-04
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 412
+I ++ P A G L D ++AVNG S+ L
Sbjct: 32 QIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALD 66
Score = 39.7 bits (93), Expect = 2e-04
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
+I ++ P A G L D ++AVNG S+ L
Sbjct: 32 QIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALD 66
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 44.3 bits (105), Expect = 4e-06
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
V + + G A R G L D ++ +N + I++ + + L V
Sbjct: 38 VRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPS--EIILLVW 92
Score = 39.7 bits (93), Expect = 2e-04
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 412
V + + G A R G L D ++ +N +
Sbjct: 38 VRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWK 72
Score = 39.7 bits (93), Expect = 2e-04
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
V + + G A R G L D ++ +N +
Sbjct: 38 VRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWK 72
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 45.3 bits (107), Expect = 4e-06
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
+ ++ G A R G L +GD +I VNG ++V + I+ N + + VV
Sbjct: 65 ALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNT--LMVKVV 121
Query: 150 PCAPVVE 156
+
Sbjct: 122 MVTRHPD 128
Score = 38.4 bits (89), Expect = 0.001
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 428 PTSMFRLLTGQETPVVVPKAKGEILGVVIVES----------GWGSMLPTVVIANLAPAG 477
P +E V++ K E G V+ + + + ++ G
Sbjct: 17 PRGSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGG 76
Query: 478 AAARCGQLNIGDQIIAVNGVSLVGLP 503
A R G L +GD +I VNG ++V +
Sbjct: 77 VAWRAG-LRMGDFLIEVNGQNVVKVG 101
Score = 38.4 bits (89), Expect = 0.001
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 348 QKEVVVPKAKGEILGVVIVES----------GWGSMLPTVVIANLAPAGAAARCGQLNIG 397
+K V++ K E G V+ + + + ++ G A R G L +G
Sbjct: 28 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMG 86
Query: 398 DQIIAVNGVSLVGLP 412
D +I VNG ++V +
Sbjct: 87 DFLIEVNGQNVVKVG 101
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 43.8 bits (104), Expect = 5e-06
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 103 AARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
+ R L GD I+ VN ++ L + + S + V L V
Sbjct: 37 SPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQ 83
Score = 37.3 bits (87), Expect = 0.001
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 388 AARCGQLNIGDQIIAVNGVSLVGLP 412
+ R L GD I+ VN ++ L
Sbjct: 37 SPRSRGLKEGDLIVEVNKKNVQALT 61
Score = 37.3 bits (87), Expect = 0.001
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 479 AARCGQLNIGDQIIAVNGVSLVGLP 503
+ R L GD I+ VN ++ L
Sbjct: 37 SPRSRGLKEGDLIVEVNKKNVQALT 61
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 43.8 bits (104), Expect = 6e-06
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVP 150
+I ++ P A G L D ++AVNG S+ L I+ +Q L V+
Sbjct: 31 QIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQ--TTLLVLD 86
Score = 40.3 bits (95), Expect = 1e-04
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 412
+I ++ P A G L D ++AVNG S+ L
Sbjct: 31 QIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALD 65
Score = 40.3 bits (95), Expect = 1e-04
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
+I ++ P A G L D ++AVNG S+ L
Sbjct: 31 QIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALD 65
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 43.1 bits (102), Expect = 9e-06
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 62 ESDEVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 120
E + + K A+G G I +S G + ++ C L GD I+ +N
Sbjct: 10 ELMTLTIVKGAQG--FGFTIADSPTGQRVKQIL--------DIQGCPGLCEGDLIVEINQ 59
Query: 121 VSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
++ L + +K+ + L +
Sbjct: 60 QNVQNLSHTEVVDILKDCPIGSETSLII 87
Score = 38.1 bits (89), Expect = 6e-04
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 349 KEVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 407
+ + K A+G G I +S G + ++ C L GD I+ +N +
Sbjct: 12 MTLTIVKGAQG--FGFTIADSPTGQRVKQIL--------DIQGCPGLCEGDLIVEINQQN 61
Query: 408 LVGLPLSTCQTYIKILMKTMPTSMFRLL 435
+ L + + IL S L+
Sbjct: 62 VQNL---SHTEVVDILKDCPIGSETSLI 86
Score = 38.1 bits (89), Expect = 7e-04
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 436 TGQETPVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 494
+GQ + + KG G I +S G + ++ C L GD I+ +
Sbjct: 6 SGQAELMTLTIVKGAQGFGFTIADSPTGQRVKQIL--------DIQGCPGLCEGDLIVEI 57
Query: 495 NGVSLVGLP 503
N ++ L
Sbjct: 58 NQQNVQNLS 66
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 43.0 bits (101), Expect = 1e-05
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 81 VESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKN 140
+ S + + + ++ G A++ G L GD+I+ +N + L S +K+ +
Sbjct: 26 LSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSS----MLKDFLS 80
Query: 141 QTVVKLTVVPCAPV 154
Q + L V +
Sbjct: 81 QPSLGLLVRTYPEL 94
Score = 39.6 bits (92), Expect = 2e-04
Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 366 VESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK---- 421
+ S + + + ++ G A++ G L GD+I+ +N + L S + ++
Sbjct: 26 LSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQPSL 84
Query: 422 -ILMKTMPT 429
+L++T P
Sbjct: 85 GLLVRTYPE 93
Score = 38.8 bits (90), Expect = 4e-04
Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 457 VESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+ S + + + ++ G A++ G L GD+I+ +N + L S + ++
Sbjct: 26 LSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLS 80
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 43.5 bits (102), Expect = 1e-05
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 81 VESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKN 140
+ S + + + ++ G A++ G L GD+I+ +N + L S +K+ +
Sbjct: 35 LSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSS----MLKDFLS 89
Query: 141 QTVVKLTV 148
Q + L V
Sbjct: 90 QPSLGLLV 97
Score = 40.4 bits (94), Expect = 1e-04
Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 338 ELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIG 397
E+++ K + + G + S + + + ++ G A++ G L G
Sbjct: 8 EIEICPKVTQSIHIEKSDTAADTYGFS-LSSVEEDGIRRLYVNSVKETGLASKKG-LKAG 65
Query: 398 DQIIAVNGVSLVGLPLS 414
D+I+ +N + L S
Sbjct: 66 DEILEINNRAADALNSS 82
Score = 40.0 bits (93), Expect = 2e-04
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 457 VESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 505
+ S + + + ++ G A++ G L GD+I+ +N + L S
Sbjct: 35 LSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSS 82
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 44.0 bits (103), Expect = 4e-05
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 78 VVIV--ESGWGSML------PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 129
+ SG+G L P I ++ P A G L D+I+ VNGV + G
Sbjct: 13 CTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHG 71
Query: 130 TCQTYIKNSKNQTVVKLTVVP 150
+ I+ ++ KL VV
Sbjct: 72 DVVSAIRAGGDE--TKLLVVD 90
Score = 38.6 bits (89), Expect = 0.002
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 363 VVIV--ESGWGSML------PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 412
+ SG+G L P I ++ P A G L D+I+ VNGV + G
Sbjct: 13 CTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
Score = 38.6 bits (89), Expect = 0.002
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 454 VVIV--ESGWGSML------PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
+ SG+G L P I ++ P A G L D+I+ VNGV + G
Sbjct: 13 CTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 44.8 bits (105), Expect = 4e-05
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 438 QETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 497
+ + +V KG+ +G+ + G + +A + AA+ G L GDQI+ VN V
Sbjct: 7 RPSMKLVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNV 61
Query: 498 SLVG 501
Sbjct: 62 DFTN 65
Score = 44.4 bits (104), Expect = 6e-05
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 67 VVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 126
+V KG+ +G+ + G + +A + AA+ G L GDQI+ VN V +
Sbjct: 12 LVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNI 66
Query: 127 PLSTCQTYIKNSKNQTVVKLTVVPC 151
++ + V +
Sbjct: 67 IREEAVLFLLDLPKGEEVTILAQKK 91
Score = 42.1 bits (98), Expect = 4e-04
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 352 VVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 410
+V KG+ +G+ + G + +A + AA+ G L GDQI+ VN V
Sbjct: 12 LVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 65
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 41.1 bits (97), Expect = 5e-05
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVP 150
V++ ++ P GAA + G + GD+II VNG + + +K K+ V LT++
Sbjct: 31 VLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNS---SHLEVVKLIKSGAYVALTLLG 85
Score = 38.4 bits (90), Expect = 5e-04
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 412
V++ ++ P GAA + G + GD+II VNG +
Sbjct: 31 VLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSS 65
Score = 38.4 bits (90), Expect = 5e-04
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
V++ ++ P GAA + G + GD+II VNG +
Sbjct: 31 VLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSS 65
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 41.8 bits (98), Expect = 6e-05
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
P I ++ P A G L D+I+ VNGV + G + I+ ++ KL VV
Sbjct: 33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDE--TKLLVV 89
Query: 150 P 150
Sbjct: 90 D 90
Score = 36.8 bits (85), Expect = 0.003
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 412
P I ++ P A G L D+I+ VNGV + G
Sbjct: 33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
Score = 36.8 bits (85), Expect = 0.003
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
P I ++ P A G L D+I+ VNGV + G
Sbjct: 33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 41.3 bits (96), Expect = 7e-05
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 51 SRTPKMICHVFESDEVVVPKAKGEILGV-VIVESGWGSMLPTVVIANLAPAG-AAARCGQ 108
+ P + + +P G V VES + TV + + +
Sbjct: 10 DQLPYSV------TLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNA 63
Query: 109 LNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
++ GD+I+ +NG + L + + IK + ++L +
Sbjct: 64 IHPGDRILEINGTPVRTLRVEEVEDAIKQTS--QTLQLLI 101
Score = 41.0 bits (95), Expect = 1e-04
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 428 PTSMFRLLTGQETPVVVPKAKGEILGV-VIVESGWGSMLPTVVIANLAPAG-AAARCGQL 485
+ + L T + +P G V VES + TV + + + +
Sbjct: 5 SSGVQDQLPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAI 64
Query: 486 NIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+ GD+I+ +NG + L + + IK
Sbjct: 65 HPGDRILEINGTPVRTLRVEEVEDAIK 91
Score = 38.6 bits (89), Expect = 8e-04
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 351 VVVPKAKGEILGV-VIVESGWGSMLPTVVIANLAPAG-AAARCGQLNIGDQIIAVNGVSL 408
+ +P G V VES + TV + + + ++ GD+I+ +NG +
Sbjct: 19 ISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPV 78
Query: 409 VGLPLSTCQTYIK 421
L + + IK
Sbjct: 79 RTLRVEEVEDAIK 91
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 44.1 bits (103), Expect = 9e-05
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 67 VVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 126
+V KG+ +G+ + G + +A + AA+ G L GDQI+ VN V +
Sbjct: 4 LVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNI 58
Query: 127 PLSTCQTYIKNSKNQTVVKLTVVPC 151
++ + V +
Sbjct: 59 IREEAVLFLLDLPKGEEVTILAQKK 83
Score = 41.4 bits (96), Expect = 6e-04
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 352 VVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
+V KG+ +G+ + G + +A + AA+ G L GDQI+ VN V +
Sbjct: 4 LVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNI 58
Score = 41.4 bits (96), Expect = 6e-04
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 443 VVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
+V KG+ +G+ + G + +A + AA+ G L GDQI+ VN V +
Sbjct: 4 LVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNI 58
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and
amyloid beta A4 protein...; chimera, Fe65L, PID domain,
amyloid precursor protein; NMR {Mus musculus}
Length = 185
Score = 42.1 bits (98), Expect = 1e-04
Identities = 13/103 (12%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
Query: 212 QPSTEVDLFISTEKIMVLNTDLKE-IMMDHALRTISYIADIGDLVVLMARRRFVSQEADE 270
+ V++ ++ + V++ +E ++++ +R +S++ D+ F+ ++
Sbjct: 51 EDWPSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFA----FIMDTGNQ 106
Query: 271 PPKISRTPKMICHVFESD-EAQFIAQSIGQAFQVAYMEFLKAN 312
+ CHVF + A +++++ A
Sbjct: 107 --------RFECHVFWCEPNAANVSEAVQAACSGPSSGIEGRG 141
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 41.6 bits (97), Expect = 2e-04
Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 5/124 (4%)
Query: 379 IANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQ 438
+ + R G D I+++NG L + + K + ++ T +
Sbjct: 20 VLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLE 79
Query: 439 ETPVVVPKAKGE----ILGVVIVESGWGSMLPTVV-IANLAPAGAAARCGQLNIGDQIIA 493
V + +LGV I + V + + AA G D II
Sbjct: 80 LRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIG 139
Query: 494 VNGV 497
+ V
Sbjct: 140 ADTV 143
Score = 32.0 bits (72), Expect = 0.35
Identities = 24/164 (14%), Positives = 46/164 (28%), Gaps = 31/164 (18%)
Query: 94 IANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL-----------STCQTYIKNSKNQT 142
+ + R G D I+++NG L + I +SK
Sbjct: 20 VLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLE 79
Query: 143 VVKLTVVPCAPVVEVKIKRPDTKYQLGFSVQNGVAPEGETQPSTEVDLFISTEKIMVLNT 202
+ + +V P + LG S++ VL
Sbjct: 80 LRETSVTP--------SNLWGGQGLLGVSIRFCSFDGANENV------------WHVLEV 119
Query: 203 DLKAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTIS 246
+ +P D I + +M + DL ++ H + +
Sbjct: 120 ESNSPAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKPLK 163
Score = 31.2 bits (70), Expect = 0.60
Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 16/104 (15%)
Query: 319 FVKEMDYQEVLNSQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLP--- 375
F+ ++ + + D L+ +K ++ + K V + WG
Sbjct: 40 FIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGV 99
Query: 376 -------------TVVIANLAPAGAAARCGQLNIGDQIIAVNGV 406
+ + AA G D II + V
Sbjct: 100 SIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTV 143
Score = 27.7 bits (61), Expect = 7.5
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ + AA G D II + V + I+ + + +KL V
Sbjct: 114 WHVLEVESNSPAALAGLRPHSDYIIGADTVMNES---EDLFSLIETHEAKP-LKLYV 166
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 41.1 bits (95), Expect = 3e-04
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKN--QTVVKLTVV 149
+ + + P G A+ L GD+II NG S + + + +K +N + ++ V
Sbjct: 26 IFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVG 83
Query: 150 PCAPVVEVKIKRPDTKYQLGFSVQNGVAPEGETQPSTEVDL 190
A D SV + T S +
Sbjct: 84 NGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLISW 124
Score = 38.0 bits (87), Expect = 0.003
Identities = 23/159 (14%), Positives = 44/159 (27%), Gaps = 37/159 (23%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK--------------- 421
+ + + P G A+ L GD+II NG S + + + +K
Sbjct: 26 IFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVG 83
Query: 422 ----------------ILMKTMPTSMFRLLTGQETPVVVP--KAKGEILGVVIVESGWGS 463
+ + ++ T +++ + + I G
Sbjct: 84 NGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLISWDASYYGVSYYRITYGETGG 143
Query: 464 MLPTVVIANLAPAGAAARCGQLNIG-DQIIAVNGVSLVG 501
P + + + A L G D I V S
Sbjct: 144 NSPVQEF-TVPYSSSTATISGLKPGVDYTITVYAYSDYY 181
Score = 36.1 bits (82), Expect = 0.012
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+ + + P G A+ L GD+II NG S + + + +K
Sbjct: 26 IFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLK 68
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor
protein-binding family B member...; chimera, Fe65L, PID
domain, amyloid precursor protein; NMR {Mus musculus}
PDB: 2yt1_A
Length = 176
Score = 38.9 bits (90), Expect = 0.001
Identities = 13/91 (14%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 212 QPSTEVDLFISTEKIMVLNTDLKE-IMMDHALRTISYIADIGDLVVLMARRRFVSQEADE 270
+ V++ ++ + V++ +E ++++ +R +S++ D+ F+ ++
Sbjct: 97 EDWPSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFA----FIMDTGNQ 152
Query: 271 PPKISRTPKMICHVFESDE-AQFIAQSIGQA 300
+ CHVF + A +++++ A
Sbjct: 153 --------RFECHVFWCEPNAANVSEAVQAA 175
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 0.001
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 283 HV-FESDEAQFIAQSIGQAFQVAYMEFLKANGIED--HSFVKEMDYQEVLNSQEIFGDEL 339
H+ FE+ E Q+ + I F+ A+++ ++D S + + + ++ S++ L
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 340 QMFAKKELQKEVVVPKAKGEIL 361
++F ++E +V K E+L
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVL 87
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member
2; phosphotyrosine-interaction domain, amyloid disease,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.2
PDB: 2roz_B
Length = 136
Score = 36.8 bits (85), Expect = 0.004
Identities = 13/93 (13%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 212 QPSTEVDLFISTEKIMVLNTDLKE-IMMDHALRTISYIADIGDLVVLMARRRFVSQEADE 270
+ V++ ++ + V++ +E ++++ +R +S++ D+ F+ ++
Sbjct: 51 EDWPSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFA----FIMDTGNQ 106
Query: 271 PPKISRTPKMICHVFESDE-AQFIAQSIGQAFQ 302
+ CHVF + A +++++ A
Sbjct: 107 --------RFECHVFWCEPNAANVSEAVQAACS 131
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 37.6 bits (88), Expect = 0.009
Identities = 25/134 (18%), Positives = 42/134 (31%), Gaps = 18/134 (13%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGV---SLVGLPLSTCQTYIKILMKTMPTSMFR 433
++ + P +A+ G + GD I ++NG S L T + + R
Sbjct: 265 AFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPG---TKVKLGLLR 320
Query: 434 ----------LLTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCG 483
L T + + G + + + I + AA+ G
Sbjct: 321 NGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAG 380
Query: 484 QLNIGDQIIAVNGV 497
L D II VN
Sbjct: 381 -LQKDDVIIGVNRD 393
Score = 31.5 bits (72), Expect = 0.66
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 62 ESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
S + G + + + I + AA+ G L D II VN
Sbjct: 335 TSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRD 393
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 37.7 bits (86), Expect = 0.010
Identities = 21/153 (13%), Positives = 49/153 (32%), Gaps = 14/153 (9%)
Query: 6 DRVHKEIMMDHALRTISY-IADI---------GDLVVLMARRRFVSQEADEPPKISRTPK 55
RV KE+ + +I + D+ + + + +
Sbjct: 402 ARVMKELWHEFGKTSIGTADDTVINWLNQYPGIDISDFLKDALYNKESLSLVELLQNFGV 461
Query: 56 MICHVFESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQI 115
M+ D+ V E V + + + + + N+ +A G L+ GD+I
Sbjct: 462 MVQKQVPVDDNSVGGKASEQPARVNFGAKYKASPQGLDVLNVYHDESAYHAG-LSAGDKI 520
Query: 116 IAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
IA++ + + + ++ V +
Sbjct: 521 IAIDHLQATEQSV---KRILERYIPGDTVTIHA 550
Score = 30.7 bits (68), Expect = 1.4
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 370 WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+ + + + N+ +A G L+ GD+IIA++ +
Sbjct: 491 YKASPQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQA 528
Score = 30.7 bits (68), Expect = 1.4
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 461 WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
+ + + + N+ +A G L+ GD+IIA++ +
Sbjct: 491 YKASPQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQA 528
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 36.2 bits (84), Expect = 0.023
Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 19/132 (14%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRL-- 434
++ + P +AA+ G + GD I ++NG P+S+ + S L
Sbjct: 288 AFVSQVLPNSSAAKAG-IKAGDVITSLNGK-----PISSFAALRAQVGTMPVGSKLTLGL 341
Query: 435 ----------LTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQ 484
L Q++ + G+ E VV+ N+ AA+ G
Sbjct: 342 LRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIG- 400
Query: 485 LNIGDQIIAVNG 496
L GD II N
Sbjct: 401 LKKGDVIIGANQ 412
Score = 30.4 bits (69), Expect = 1.7
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNG 120
VV+ N+ AA+ G L GD II N
Sbjct: 385 VVVNNVKTGTPAAQIG-LKKGDVIIGANQ 412
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 34.6 bits (80), Expect = 0.068
Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 22/139 (15%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGV---SLVGLPLSTCQTYIKILMKTMPTSMFR 433
+++ + P A G L GD I +N + + + T+ + R
Sbjct: 284 ALVSQVNPNSPAELAG-LKAGDIITQINDTKITQATQVKTTISLLRVG---STVKIIVER 339
Query: 434 ----------LLTGQETPVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAA 479
+ + + + G+ + ES + V + + A
Sbjct: 340 DNKPLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAG 399
Query: 480 ARCGQLNIGDQIIAVNGVS 498
R G + GD II+ N
Sbjct: 400 WRAG-IRPGDIIISANKKP 417
Score = 30.7 bits (70), Expect = 1.3
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 62 ESDEVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 117
+S E + + G+ + ES + V + + A R G + GD II+
Sbjct: 354 KSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRAG-IRPGDIIIS 412
Query: 118 VNGVS 122
N
Sbjct: 413 ANKKP 417
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 34.8 bits (80), Expect = 0.073
Identities = 11/61 (18%), Positives = 17/61 (27%)
Query: 112 GDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDTKYQLGFS 171
G I+ +NG + S V K V V + +T S
Sbjct: 111 GHWIMMMNGDYITKKVESELLQGSTRQLQIGVYKEVVGEDGEVTGGVVPIGETTMPASRS 170
Query: 172 V 172
+
Sbjct: 171 L 171
Score = 29.0 bits (65), Expect = 4.3
Identities = 7/48 (14%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 397 GDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQETPVVV 444
G I+ +NG + S ++ + + +++ + G++ V
Sbjct: 111 GHWIMMMNGDYITKKVES---ELLQGSTRQLQIGVYKEVVGEDGEVTG 155
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 34.2 bits (79), Expect = 0.086
Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 72 KGEILGV---VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL 128
G + GV + + G G + VV+ P G A + G GD I+ V+G ++ G+ L
Sbjct: 81 AGSVTGVGLEITYDGGSGKDV--VVLTPA-PGGPAEKAG-ARAGDVIVTVDGTAVKGMSL 136
Query: 129 STCQTYIKNSKNQTVVKLTVV---PCAPVVEVKIKR 161
++ + + V++ + + +++ R
Sbjct: 137 YDVSDLLQGEAD-SQVEVVLHAPGAPSNTRTLQLTR 171
Score = 28.8 bits (65), Expect = 4.9
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 345 KELQKEVVVPKAKGEILGV---VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 401
L++ G + GV + + G G + VV+ P G A + G GD I+
Sbjct: 74 AALRRGT-----AGSVTGVGLEITYDGGSGKDV--VVLTPA-PGGPAEKAG-ARAGDVIV 124
Query: 402 AVNGVSLVGLPLS 414
V+G ++ G+ L
Sbjct: 125 TVDGTAVKGMSLY 137
Score = 28.8 bits (65), Expect = 5.0
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 448 KGEILGV---VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL 504
G + GV + + G G + VV+ P G A + G GD I+ V+G ++ G+ L
Sbjct: 81 AGSVTGVGLEITYDGGSGKDV--VVLTPA-PGGPAEKAG-ARAGDVIVTVDGTAVKGMSL 136
Query: 505 S 505
Sbjct: 137 Y 137
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.8 bits (74), Expect = 0.20
Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 34/129 (26%)
Query: 236 IMMDHALRTISYIADIGDLVVLMARRRFVS----QEADEPPK----ISRTPKMICHVFES 287
I ++++ D D + R VS + + K I+ P FE+
Sbjct: 120 IQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEP------FEN 173
Query: 288 DEAQFIAQSIGQAFQVAYMEFLKANGIEDHSFVKEMDYQEVLNSQEIFGDE------LQM 341
I A ++ E L + + + +D LN + F D +Q
Sbjct: 174 -----I------AIELPPNEILFSENNDMDNNNDGVDE---LNKKCTFWDAISKLYYVQF 219
Query: 342 FAKKELQKE 350
F K+ Q++
Sbjct: 220 FFKQAEQEQ 228
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 30.0 bits (68), Expect = 0.40
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
V + ++ P AA G+L GD+I A++G + +Y++ + V++T +
Sbjct: 7 VYVMSVLPNMPAA--GRLEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRVRVTFI 60
Score = 28.4 bits (64), Expect = 1.6
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNG 405
V + ++ P AA G+L GD+I A++G
Sbjct: 7 VYVMSVLPNMPAA--GRLEAGDRIAAIDG 33
Score = 28.4 bits (64), Expect = 1.6
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNG 496
V + ++ P AA G+L GD+I A++G
Sbjct: 7 VYVMSVLPNMPAA--GRLEAGDRIAAIDG 33
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 31.7 bits (71), Expect = 0.72
Identities = 9/75 (12%), Positives = 20/75 (26%), Gaps = 6/75 (8%)
Query: 94 IANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPC-- 151
+N G G I ++G ++ S + T ++ +
Sbjct: 760 YSNEGEKSPIFEYGIDPTGYLIEDIDGETV--GAGSNIYRVLSEKAG-TSARIRLSGKGG 816
Query: 152 -APVVEVKIKRPDTK 165
+ + I D
Sbjct: 817 DKRDLMIDILDDDRF 831
Score = 29.0 bits (64), Expect = 4.6
Identities = 8/79 (10%), Positives = 20/79 (25%), Gaps = 14/79 (17%)
Query: 379 IANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQ 438
+N G G I ++G ++ + + G
Sbjct: 760 YSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAG--------------SNIYRVLSEKAGT 805
Query: 439 ETPVVVPKAKGEILGVVIV 457
+ + G+ ++I
Sbjct: 806 SARIRLSGKGGDKRDLMID 824
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 29.8 bits (67), Expect = 0.92
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMP 428
V I ++ P A+ L G I ++NG+ P S TY L
Sbjct: 27 VQIDSVVPGSPAS--KVLTPGLVIESINGM-----PTSNLTTYSAALKTISV 71
Score = 29.4 bits (66), Expect = 1.1
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
V I ++ P A+ L G I ++NG+ L+T +K V+ +T
Sbjct: 27 VQIDSVVPGSPAS--KVLTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINITT 79
Score = 27.1 bits (60), Expect = 7.6
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVS 498
V I ++ P A+ L G I ++NG+
Sbjct: 27 VQIDSVVPGSPAS--KVLTPGLVIESINGMP 55
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 29.1 bits (65), Expect = 1.2
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
++ G L GD +A+NG+ L + T ++ T + LTV
Sbjct: 39 YRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTV 92
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 28.8 bits (65), Expect = 1.2
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
V + ++ AA L+ GD I ++G + YI + K VK+
Sbjct: 9 VYVMSVKDDVPAA--DVLHAGDLITEIDGNAFKS--SQEFIDYIHSKKVGDTVKINYK 62
Score = 27.7 bits (62), Expect = 3.7
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMP 428
V + ++ AA L+ GD I ++G + Q +I +
Sbjct: 9 VYVMSVKDDVPAA--DVLHAGDLITEIDGN-----AFKSSQEFIDYIHSKKV 53
Score = 27.3 bits (61), Expect = 4.2
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNG 496
V + ++ AA L+ GD I ++G
Sbjct: 9 VYVMSVKDDVPAA--DVLHAGDLITEIDG 35
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 28.0 bits (63), Expect = 2.3
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
+ +++ A G++ +GD+II+ +G + YI + K V L +
Sbjct: 3 IYASSVVENMPAK--GKIEVGDKIISADGKNYQS--AEKLIDYISSKKAGDKVTLKIE 56
Score = 26.5 bits (59), Expect = 7.3
Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMP 428
+ +++ A G++ +GD+II+ +G + + I +
Sbjct: 3 IYASSVVENMPAK--GKIEVGDKIISADGK-----NYQSAEKLIDYISSKKA 47
Score = 26.5 bits (59), Expect = 8.0
Identities = 7/29 (24%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNG 496
+ +++ A G++ +GD+II+ +G
Sbjct: 3 IYASSVVENMPAK--GKIEVGDKIISADG 29
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 27.8 bits (62), Expect = 2.6
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 93 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCA 152
V+ N+ P AA+ G L GD+I+ V+G L T ++++ + + L +
Sbjct: 7 VLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXS-LALEIERQG 62
Query: 153 PVVEVKIKRPDTKYQLGFSV-QNGVAP 178
+ + + P++ G ++ G+ P
Sbjct: 63 SPLSLTLI-PESXPGNGXAIGFVGIEP 88
Score = 27.1 bits (60), Expect = 4.9
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 378 VIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
V+ N+ P AA+ G L GD+I+ V+G L
Sbjct: 7 VLENVQPNSAASXAG-LQAGDRIVXVDGQPL 36
Score = 27.1 bits (60), Expect = 4.9
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 469 VIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
V+ N+ P AA+ G L GD+I+ V+G L
Sbjct: 7 VLENVQPNSAASXAG-LQAGDRIVXVDGQPL 36
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 27.5 bits (61), Expect = 3.2
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 94 IANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
++ G L GD +A+NG+ L + T ++ T + LTV
Sbjct: 23 VSPGKDPVLFESIG-LQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTV 74
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_C*
Length = 1342
Score = 29.3 bits (66), Expect = 3.5
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 16/92 (17%)
Query: 176 VAPEGETQPSTEVDLF--ISTEKIM-VLNTDLKAPEGETQPSTEVDLF------------ 220
V P+GETQ + E L I EK V ++ L+ P G + +V +F
Sbjct: 887 VTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL 946
Query: 221 -ISTEKIMVLNTDLKEIMMDHALRTISYIADI 251
I ++ DL E + S I +
Sbjct: 947 EIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 4.2
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 195 EK--IMVLNTDLK--APEGETQPSTEVD 218
EK + L LK A ++ P+ +
Sbjct: 18 EKQALKKLQASLKLYAD--DSAPALAIK 43
>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn SOD,
SOD-like, superoxide dismutase mutants, STRU genomics,
unknown function; 1.60A {Bacillus subtilis} PDB: 1xtl_B
1s4i_B 1u3n_A
Length = 175
Score = 28.1 bits (63), Expect = 5.0
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 338 ELQMFAKKELQKEVVVPKAKGEILGVV-IVESGWGSMLPTVVIANLAP 384
E ++ V + +G+ +G + I ES + + +L P
Sbjct: 11 EKKVVETSAFGHHVQLVNREGKAVGFIEIKESDDEGLDIHISANSLRP 58
>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric
superoxide dismutase, copper enzymes, enzyme evolution,
X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB:
2k4w_A
Length = 154
Score = 28.0 bits (63), Expect = 5.1
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 343 AKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAP 384
A ++++ +V + G+ +G V + + + + L P
Sbjct: 1 ASEKVEMNLVTSQGVGQSIGSVTITETDKGLEFSPDLKALPP 42
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 26.8 bits (59), Expect = 5.4
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 93 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVP 150
V+ +A AA + G ++ AV+G+ + + + +TV P
Sbjct: 5 VVGEIAANSIAAEAQ-IAPGTELKAVDGIETPD--WDAVRLQLVDKIGDESTTITVAP 59
Score = 26.1 bits (57), Expect = 9.5
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 378 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTG 437
V+ +A AA + G ++ AV+G+ Q KI ++ ++ +
Sbjct: 5 VVGEIAANSIAAEAQ-IAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSD 63
Query: 438 QETPVVVP 445
Q V +
Sbjct: 64 QRRDVKLD 71
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance,
cell WALL, transmembrane; 2.4A {Streptococcus
pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1
PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B*
2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A*
2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Length = 702
Score = 28.5 bits (64), Expect = 6.7
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 331 SQEIFGDELQMFAKKELQKEVVVPKAKGEIL---GVVIVES 368
+ FG +L AKK Q VP +G I GV I E
Sbjct: 2 TGTRFGTDLAKEAKKVHQTTRTVPAKRGTIYDRNGVPIAED 42
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 27.8 bits (62), Expect = 9.2
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 201 NTDLKAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMAR 260
A G + V F T L DL +I D A ++ Y + G ++
Sbjct: 343 FRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPY--EKGFALLFYLE 400
Query: 261 RRFVSQEA 268
+ E
Sbjct: 401 QLLGGPEI 408
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.387
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,982,816
Number of extensions: 515050
Number of successful extensions: 1914
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1737
Number of HSP's successfully gapped: 585
Length of query: 518
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 420
Effective length of database: 3,965,535
Effective search space: 1665524700
Effective search space used: 1665524700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)