Query psy348
Match_columns 293
No_of_seqs 117 out of 1149
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 17:47:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1583|consensus 100.0 4.5E-38 9.7E-43 270.5 11.4 265 6-275 54-320 (330)
2 PF08449 UAA: UAA transporter 100.0 1.2E-31 2.6E-36 244.0 23.9 231 15-270 63-298 (303)
3 PTZ00343 triose or hexose phos 100.0 1E-26 2.2E-31 215.5 23.3 238 6-270 103-349 (350)
4 TIGR00817 tpt Tpt phosphate/ph 100.0 1.2E-26 2.5E-31 211.0 22.5 227 16-270 65-294 (302)
5 KOG1580|consensus 99.9 1.4E-27 3E-32 201.7 13.0 223 16-266 85-310 (337)
6 KOG1581|consensus 99.9 1.1E-26 2.4E-31 203.1 17.4 238 10-275 77-317 (327)
7 KOG1441|consensus 99.9 1.2E-26 2.5E-31 209.1 12.6 223 16-271 83-309 (316)
8 KOG1582|consensus 99.9 4.9E-25 1.1E-29 189.6 14.0 226 16-273 106-334 (367)
9 PF06027 DUF914: Eukaryotic pr 99.9 4.8E-24 1E-28 194.3 17.5 232 14-272 77-308 (334)
10 PLN00411 nodulin MtN21 family 99.9 2.4E-22 5.3E-27 186.2 20.3 248 16-283 78-340 (358)
11 KOG1442|consensus 99.9 2E-23 4.3E-28 180.0 0.9 245 6-285 91-341 (347)
12 KOG1444|consensus 99.9 9.5E-21 2.1E-25 167.8 17.2 223 16-271 77-302 (314)
13 PRK11453 O-acetylserine/cystei 99.9 7.3E-20 1.6E-24 166.3 21.5 223 16-266 58-284 (299)
14 TIGR00950 2A78 Carboxylate/Ami 99.8 2E-19 4.4E-24 159.5 20.1 212 16-264 46-259 (260)
15 PF04142 Nuc_sug_transp: Nucle 99.8 1.8E-19 4E-24 158.6 16.9 228 16-260 17-244 (244)
16 PRK11689 aromatic amino acid e 99.8 2.7E-19 6E-24 162.2 18.1 220 18-267 63-285 (295)
17 KOG1443|consensus 99.8 1.4E-19 2.9E-24 158.7 11.5 227 16-268 80-314 (349)
18 PRK15430 putative chlorampheni 99.8 1E-18 2.2E-23 158.5 16.8 206 21-268 78-284 (296)
19 KOG2234|consensus 99.8 2.7E-18 5.8E-23 154.3 16.3 228 16-269 92-322 (345)
20 PRK11272 putative DMT superfam 99.8 4.2E-18 9.2E-23 154.2 17.3 214 16-268 68-284 (292)
21 PRK10532 threonine and homoser 99.8 5.8E-17 1.3E-21 146.8 21.8 209 16-268 71-280 (293)
22 TIGR03340 phn_DUF6 phosphonate 99.8 1.2E-17 2.6E-22 150.4 14.3 211 19-266 66-280 (281)
23 KOG3912|consensus 99.7 6E-17 1.3E-21 140.6 13.5 239 16-270 86-335 (372)
24 COG5070 VRG4 Nucleotide-sugar 99.7 3.5E-17 7.7E-22 137.7 6.0 231 16-271 68-298 (309)
25 PF03151 TPT: Triose-phosphate 99.7 8.6E-16 1.9E-20 125.6 11.5 147 118-269 1-153 (153)
26 KOG2765|consensus 99.7 1.5E-15 3.3E-20 136.8 13.2 231 16-268 159-389 (416)
27 COG0697 RhaT Permeases of the 99.6 3.1E-14 6.7E-19 127.3 21.1 212 18-268 72-286 (292)
28 TIGR00803 nst UDP-galactose tr 99.6 3.5E-15 7.5E-20 129.9 8.5 208 41-267 2-222 (222)
29 TIGR00688 rarD rarD protein. T 99.5 5.9E-13 1.3E-17 118.2 15.5 184 18-244 72-255 (256)
30 TIGR00776 RhaT RhaT L-rhamnose 99.5 4.7E-12 1E-16 114.6 18.9 211 19-266 62-285 (290)
31 KOG2766|consensus 99.4 2.5E-14 5.5E-19 122.8 -1.3 221 16-268 78-298 (336)
32 COG2962 RarD Predicted permeas 99.4 2.2E-11 4.9E-16 107.1 16.6 207 20-269 76-283 (293)
33 KOG4510|consensus 99.4 6.7E-13 1.4E-17 114.9 4.8 219 23-266 104-322 (346)
34 COG5006 rhtA Threonine/homoser 99.3 3.2E-10 6.9E-15 97.7 16.4 208 16-266 71-279 (292)
35 PF05653 Mg_trans_NIPA: Magnes 98.8 9E-08 2E-12 86.9 13.7 227 18-266 51-289 (300)
36 PF13536 EmrE: Multidrug resis 98.7 1.4E-08 3.1E-13 78.9 4.6 76 16-93 34-110 (113)
37 PF00892 EamA: EamA-like trans 98.6 9.1E-08 2E-12 74.5 6.6 124 127-267 1-124 (126)
38 PF06800 Sugar_transport: Suga 98.5 5.3E-06 1.1E-10 73.6 16.2 214 17-266 46-268 (269)
39 PRK15430 putative chlorampheni 98.5 2.8E-06 6.1E-11 77.1 13.5 138 116-268 7-144 (296)
40 KOG4314|consensus 98.5 3.6E-07 7.8E-12 76.4 6.4 207 20-266 57-273 (290)
41 COG2510 Predicted membrane pro 98.5 2.9E-07 6.3E-12 71.6 5.3 129 119-266 5-136 (140)
42 TIGR00688 rarD rarD protein. T 98.4 4.7E-06 1E-10 73.9 12.1 134 118-266 3-139 (256)
43 PRK02971 4-amino-4-deoxy-L-ara 98.4 1.2E-05 2.6E-10 63.9 12.5 117 117-267 2-120 (129)
44 PF00892 EamA: EamA-like trans 98.3 9E-07 2E-11 68.8 5.2 71 16-87 53-124 (126)
45 TIGR03340 phn_DUF6 phosphonate 98.2 1.7E-05 3.8E-10 71.3 11.5 130 119-266 3-132 (281)
46 PRK15051 4-amino-4-deoxy-L-ara 98.1 9.5E-06 2.1E-10 62.9 7.5 64 24-88 45-108 (111)
47 PLN00411 nodulin MtN21 family 98.1 9.7E-05 2.1E-09 68.9 13.6 135 117-266 13-153 (358)
48 PRK15051 4-amino-4-deoxy-L-ara 97.8 0.00013 2.8E-09 56.5 7.8 56 212-267 52-107 (111)
49 PF13536 EmrE: Multidrug resis 97.7 0.00053 1.2E-08 53.0 10.4 59 209-268 47-105 (113)
50 COG2510 Predicted membrane pro 97.7 4.2E-05 9E-10 59.8 3.7 72 17-89 67-139 (140)
51 TIGR00950 2A78 Carboxylate/Ami 97.7 0.00033 7.1E-09 61.9 9.8 68 201-268 51-118 (260)
52 KOG2922|consensus 97.6 0.00094 2E-08 60.2 12.3 220 25-266 73-303 (335)
53 TIGR00817 tpt Tpt phosphate/ph 97.6 0.0012 2.6E-08 59.9 12.5 70 197-266 65-134 (302)
54 PRK10452 multidrug efflux syst 97.5 0.00038 8.2E-09 54.5 7.1 74 17-91 31-105 (120)
55 PRK11689 aromatic amino acid e 97.5 0.0013 2.9E-08 59.5 11.8 127 117-266 4-134 (295)
56 PRK11453 O-acetylserine/cystei 97.5 0.0016 3.4E-08 59.2 11.9 121 120-266 7-129 (299)
57 PRK11272 putative DMT superfam 97.5 0.0028 6E-08 57.3 13.2 128 119-267 10-139 (292)
58 COG2962 RarD Predicted permeas 97.4 0.002 4.3E-08 57.4 11.5 139 116-270 6-145 (293)
59 PRK02971 4-amino-4-deoxy-L-ara 97.4 0.00059 1.3E-08 54.3 7.4 72 19-91 50-124 (129)
60 PRK11431 multidrug efflux syst 97.4 0.00069 1.5E-08 51.8 7.3 73 16-89 29-102 (105)
61 PF03151 TPT: Triose-phosphate 97.4 0.00054 1.2E-08 55.4 7.2 72 16-88 81-152 (153)
62 COG2076 EmrE Membrane transpor 97.4 0.00063 1.4E-08 51.7 6.6 74 16-90 30-104 (106)
63 PRK10650 multidrug efflux syst 97.4 0.00087 1.9E-08 51.6 7.2 71 16-87 35-106 (109)
64 PTZ00343 triose or hexose phos 97.3 0.0048 1E-07 57.4 13.5 131 121-266 53-183 (350)
65 PRK09541 emrE multidrug efflux 97.2 0.0012 2.7E-08 50.9 6.9 74 17-91 31-105 (110)
66 TIGR00776 RhaT RhaT L-rhamnose 97.2 0.0021 4.6E-08 58.2 9.3 129 118-268 2-135 (290)
67 PRK10452 multidrug efflux syst 97.0 0.003 6.5E-08 49.5 7.1 56 212-267 45-101 (120)
68 PRK13499 rhamnose-proton sympo 97.0 0.013 2.9E-07 54.1 12.4 136 116-270 6-154 (345)
69 PRK13499 rhamnose-proton sympo 97.0 0.12 2.6E-06 47.9 18.7 226 20-266 77-338 (345)
70 PRK10532 threonine and homoser 97.0 0.0022 4.7E-08 58.1 7.1 65 26-91 219-283 (293)
71 COG0697 RhaT Permeases of the 97.0 0.016 3.6E-07 51.3 12.7 136 116-268 6-142 (292)
72 PF04142 Nuc_sug_transp: Nucle 96.9 0.0031 6.8E-08 55.7 6.8 60 209-268 29-88 (244)
73 PRK09541 emrE multidrug efflux 96.8 0.0055 1.2E-07 47.3 7.2 55 213-267 46-101 (110)
74 PF08449 UAA: UAA transporter 96.7 0.013 2.8E-07 53.3 10.2 62 209-270 76-137 (303)
75 COG2076 EmrE Membrane transpor 96.7 0.0087 1.9E-07 45.6 7.4 51 216-266 49-100 (106)
76 PF10639 UPF0546: Uncharacteri 96.7 0.0032 6.9E-08 48.7 4.8 71 16-87 41-112 (113)
77 PRK10650 multidrug efflux syst 96.7 0.0098 2.1E-07 45.8 7.4 54 213-266 51-105 (109)
78 PF05653 Mg_trans_NIPA: Magnes 96.5 0.015 3.2E-07 53.0 8.9 115 115-266 5-119 (300)
79 PRK11431 multidrug efflux syst 96.5 0.013 2.8E-07 44.8 7.2 53 214-266 46-99 (105)
80 PF00893 Multi_Drug_Res: Small 96.5 0.0072 1.6E-07 45.1 5.6 61 19-80 32-93 (93)
81 PF04657 DUF606: Protein of un 96.2 0.084 1.8E-06 42.4 10.7 130 119-265 3-137 (138)
82 PF06027 DUF914: Eukaryotic pr 96.2 0.077 1.7E-06 49.0 11.8 70 196-266 79-148 (334)
83 KOG4510|consensus 95.7 0.0015 3.2E-08 57.5 -1.7 64 204-267 104-167 (346)
84 PF00893 Multi_Drug_Res: Small 95.4 0.034 7.3E-07 41.5 5.1 48 213-260 45-93 (93)
85 COG4975 GlcU Putative glucose 95.0 0.0044 9.5E-08 54.0 -1.1 210 23-268 66-284 (288)
86 PF06800 Sugar_transport: Suga 94.9 0.085 1.8E-06 47.1 6.8 72 195-266 43-119 (269)
87 TIGR00803 nst UDP-galactose tr 94.7 0.045 9.7E-07 47.3 4.4 69 17-86 153-221 (222)
88 COG5006 rhtA Threonine/homoser 94.3 0.075 1.6E-06 46.7 4.8 61 30-91 224-284 (292)
89 PF10639 UPF0546: Uncharacteri 93.9 0.076 1.6E-06 41.1 3.7 68 194-265 42-110 (113)
90 KOG2765|consensus 93.7 0.057 1.2E-06 49.9 3.0 68 201-268 163-230 (416)
91 KOG2234|consensus 91.6 0.54 1.2E-05 43.2 6.5 58 209-266 104-161 (345)
92 PF07857 DUF1632: CEO family ( 90.0 0.36 7.9E-06 42.8 3.8 66 209-274 67-139 (254)
93 PF06379 RhaT: L-rhamnose-prot 89.8 5.5 0.00012 36.8 11.2 36 115-154 5-40 (344)
94 KOG1580|consensus 89.7 0.3 6.6E-06 42.5 2.9 80 10-90 233-314 (337)
95 KOG4831|consensus 86.2 0.95 2.1E-05 34.3 3.3 72 16-88 52-124 (125)
96 KOG1441|consensus 85.4 0.22 4.7E-06 45.6 -0.4 71 21-92 240-310 (316)
97 COG3238 Uncharacterized protei 85.2 17 0.00037 29.5 10.5 135 116-266 4-143 (150)
98 PF05961 Chordopox_A13L: Chord 84.5 0.88 1.9E-05 31.4 2.3 20 253-272 6-25 (68)
99 KOG1581|consensus 84.5 1.2 2.5E-05 40.3 3.7 76 12-88 235-312 (327)
100 COG4975 GlcU Putative glucose 83.6 1.6 3.5E-05 38.4 4.1 71 196-266 58-133 (288)
101 KOG2922|consensus 82.1 0.62 1.4E-05 42.4 1.1 131 116-285 20-150 (335)
102 COG5070 VRG4 Nucleotide-sugar 81.2 2.8 6E-05 36.4 4.6 74 17-91 225-298 (309)
103 KOG3912|consensus 78.4 2.9 6.2E-05 37.6 3.9 53 214-266 103-155 (372)
104 KOG4314|consensus 76.1 2.3 4.9E-05 36.2 2.5 54 215-268 71-124 (290)
105 PF04689 S1FA: DNA binding pro 72.6 2.8 6.1E-05 28.6 1.8 14 278-291 44-57 (69)
106 KOG0009|consensus 72.5 1.7 3.8E-05 29.0 0.8 21 273-293 10-30 (62)
107 KOG1444|consensus 68.8 44 0.00094 30.6 9.1 53 216-268 96-148 (314)
108 PF05297 Herpes_LMP1: Herpesvi 68.0 1.7 3.7E-05 38.9 0.0 37 116-153 106-142 (381)
109 PF11044 TMEMspv1-c74-12: Plec 66.5 2.7 5.8E-05 26.5 0.7 10 261-270 20-29 (49)
110 PF02694 UPF0060: Uncharacteri 63.6 9.3 0.0002 29.1 3.2 40 52-91 66-105 (107)
111 PRK02237 hypothetical protein; 62.9 9.8 0.00021 29.0 3.2 40 52-91 68-107 (109)
112 PF08229 SHR3_chaperone: ER me 62.8 2.8 6.1E-05 35.6 0.4 16 278-293 181-196 (196)
113 PF14981 FAM165: FAM165 family 59.0 4.4 9.5E-05 25.8 0.7 12 257-268 20-31 (51)
114 PF06379 RhaT: L-rhamnose-prot 59.0 41 0.00088 31.2 7.1 113 16-137 73-193 (344)
115 PF04342 DUF486: Protein of un 56.9 44 0.00095 25.5 5.8 60 26-86 45-105 (108)
116 COG1742 Uncharacterized conser 55.9 56 0.0012 24.8 6.2 40 52-91 67-106 (109)
117 PHA03049 IMV membrane protein; 54.9 11 0.00024 25.9 2.1 18 253-270 6-23 (68)
118 PF06783 UPF0239: Uncharacteri 54.9 6.1 0.00013 28.7 0.9 24 270-293 62-85 (85)
119 smart00786 SHR3_chaperone ER m 54.5 4.8 0.0001 34.1 0.4 9 285-293 188-196 (196)
120 PRK14405 membrane protein; Pro 54.4 69 0.0015 27.4 7.5 30 114-143 46-75 (202)
121 PF14880 COX14: Cytochrome oxi 52.4 3.5 7.5E-05 27.9 -0.6 23 248-270 15-37 (59)
122 PRK04125 murein hydrolase regu 50.6 12 0.00026 30.2 2.0 17 275-291 119-135 (141)
123 PRK09336 30S ribosomal protein 50.5 7.5 0.00016 25.3 0.7 20 273-292 9-28 (50)
124 PF04342 DUF486: Protein of un 50.3 8.2 0.00018 29.3 1.0 27 239-265 78-104 (108)
125 PF04657 DUF606: Protein of un 49.3 55 0.0012 26.0 5.8 69 16-86 65-138 (138)
126 TIGR00990 3a0801s09 mitochondr 48.8 4 8.7E-05 40.8 -1.1 13 279-291 64-76 (615)
127 PF08374 Protocadherin: Protoc 48.1 13 0.00028 32.0 2.0 11 256-266 49-59 (221)
128 PF10669 Phage_Gp23: Protein g 46.9 7.1 0.00015 29.0 0.2 16 276-291 47-62 (121)
129 KOG4112|consensus 46.4 9.8 0.00021 28.2 0.9 7 287-293 95-101 (101)
130 COG3169 Uncharacterized protei 45.4 28 0.00062 26.1 3.2 35 54-88 80-114 (116)
131 PTZ00467 40S ribosomal protein 45.4 10 0.00022 26.1 0.8 20 273-292 10-29 (66)
132 PF10066 DUF2304: Uncharacteri 45.3 17 0.00036 28.1 2.1 26 238-263 55-80 (115)
133 COG3169 Uncharacterized protei 41.0 25 0.00054 26.4 2.3 29 238-266 84-112 (116)
134 PF03605 DcuA_DcuB: Anaerobic 40.2 3.2E+02 0.0069 25.7 10.4 38 218-266 140-179 (364)
135 KOG1582|consensus 39.4 88 0.0019 28.3 5.9 50 42-91 285-334 (367)
136 PRK02237 hypothetical protein; 38.0 50 0.0011 25.3 3.6 41 226-266 62-102 (109)
137 PF15012 DUF4519: Domain of un 37.3 17 0.00036 24.3 0.8 15 277-291 7-21 (56)
138 PF02694 UPF0060: Uncharacteri 34.5 60 0.0013 24.8 3.5 41 226-266 60-100 (107)
139 PRK14859 tatA twin arginine tr 34.0 37 0.00081 23.3 2.2 13 235-247 10-22 (63)
140 PF11446 DUF2897: Protein of u 33.6 37 0.00081 22.6 2.1 12 257-268 8-19 (55)
141 PF06946 Phage_holin_5: Phage 30.6 1.6E+02 0.0034 21.9 5.1 67 216-283 23-93 (93)
142 PRK14409 membrane protein; Pro 30.5 2.8E+02 0.006 23.8 7.4 26 115-140 45-70 (205)
143 PRK14397 membrane protein; Pro 30.3 2.3E+02 0.0051 24.6 7.0 31 114-144 45-75 (222)
144 PF01350 Flavi_NS4A: Flaviviru 30.3 2.7E+02 0.0059 22.5 6.8 47 216-266 67-113 (144)
145 PF04246 RseC_MucC: Positive r 25.3 57 0.0012 25.6 2.3 24 250-273 96-119 (135)
146 PF07771 TSGP1: Tick salivary 24.4 32 0.00068 26.9 0.6 7 118-124 5-11 (120)
147 COG3238 Uncharacterized protei 24.4 3.1E+02 0.0066 22.3 6.3 42 48-89 101-146 (150)
148 COG1971 Predicted membrane pro 24.3 63 0.0014 27.4 2.4 39 227-265 44-83 (190)
149 PF02355 SecD_SecF: Protein ex 23.9 1.8E+02 0.0039 24.5 5.1 44 224-268 57-100 (189)
150 PRK12437 prolipoprotein diacyl 23.1 45 0.00099 29.8 1.4 44 224-267 205-253 (269)
151 PRK11562 nitrite transporter N 22.9 47 0.001 29.8 1.4 39 248-290 228-266 (268)
152 PF04758 Ribosomal_S30: Riboso 22.6 20 0.00043 24.2 -0.7 17 276-292 11-27 (59)
153 PF03219 TLC: TLC ATP/ADP tran 22.3 1.1E+02 0.0024 29.9 4.0 13 16-28 23-35 (491)
154 COG3366 Uncharacterized protei 21.9 94 0.002 28.4 3.1 51 226-277 102-152 (311)
155 PF04647 AgrB: Accessory gene 21.8 2.1E+02 0.0046 23.5 5.2 7 225-231 78-84 (185)
156 PRK01821 hypothetical protein; 21.8 65 0.0014 25.6 1.9 14 271-284 118-131 (133)
157 PRK13022 secF preprotein trans 21.8 1.7E+02 0.0036 26.5 4.8 47 221-268 150-196 (289)
158 PF07444 Ycf66_N: Ycf66 protei 21.6 65 0.0014 23.5 1.7 22 248-269 4-25 (84)
159 TIGR00916 2A0604s01 protein-ex 21.6 1.7E+02 0.0036 24.6 4.5 35 235-269 84-118 (192)
160 PHA02828 putative transmembran 21.0 44 0.00094 24.6 0.7 7 282-288 75-81 (100)
161 COG2211 MelB Na+/melibiose sym 20.5 1.1E+02 0.0024 29.7 3.6 33 247-279 180-212 (467)
162 PHA02898 virion envelope prote 20.3 3.1E+02 0.0068 20.1 4.9 54 64-128 6-59 (92)
163 PRK01637 hypothetical protein; 20.2 3.7E+02 0.0081 24.0 6.8 37 253-291 250-286 (286)
164 PRK02463 OxaA-like protein pre 20.0 5.8E+02 0.012 23.3 7.9 21 248-268 228-248 (307)
No 1
>KOG1583|consensus
Probab=100.00 E-value=4.5e-38 Score=270.49 Aligned_cols=265 Identities=52% Similarity=0.880 Sum_probs=232.3
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhh
Q psy348 6 SLPVIIPRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGII 85 (293)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~ 85 (293)
+.+..+++-+.|+|.....+++..++++|++++||++.|.+.++|+.+++.+|++++++.|||++.+|+.+++++++|++
T Consensus 54 kf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGii 133 (330)
T KOG1583|consen 54 KFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGII 133 (330)
T ss_pred cccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhhe
Confidence 44556644449999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred heeeccCccccccCCCc--cccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHH
Q psy348 86 ICTIMSSQEIKKYGVSD--EEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFA 163 (293)
Q Consensus 86 i~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l 163 (293)
++.......... .+++ .+ +. .++-.|+..|+.+...|.+.+|..+++||...+|||.+|.|.++|+++.++|.|+
T Consensus 134 IcTl~s~~d~~~-~~~~l~~~-~~-~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Fl 210 (330)
T KOG1583|consen 134 ICTLFSSKDGRS-KLSGLDSG-SA-QSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFL 210 (330)
T ss_pred eEEeecCcchhh-hhcccccC-cc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHH
Confidence 999775443221 1111 01 11 1123467899999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhe
Q psy348 164 FLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIV 243 (293)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~ 243 (293)
+..+++.++++....++.+..|-+ +...|..|.+++.+++.||.|+-+++.+..+++++|.+++.++|+.++.++|++
T Consensus 211 f~~~div~~~~~~~~se~~~~p~~--g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~Sii 288 (330)
T KOG1583|consen 211 FMGDDIVSHWRLAFKSESYLIPLL--GFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSII 288 (330)
T ss_pred HhcchHHHHHHHHhcCcceecccc--CccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheee
Confidence 988889999988877776666644 345889999999999999999999999999999999999999999999999999
Q ss_pred eecCcccccchhhhhHHHHHHHHHhhhccccc
Q psy348 244 YFQNEFTLYHWTGTALVFVGTVIFTQLVPSLM 275 (293)
Q Consensus 244 ~fge~lt~~~~iG~~lv~~Gv~~Y~~~~~k~~ 275 (293)
+|++|+|++||+|.++|+.|..+|+..+.+.|
T Consensus 289 yF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~ 320 (330)
T KOG1583|consen 289 YFENPFTPWHWLGAALVFFGTLLFANVWNHPK 320 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999999999999877765
No 2
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=100.00 E-value=1.2e-31 Score=244.00 Aligned_cols=231 Identities=35% Similarity=0.615 Sum_probs=198.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCcc
Q psy348 15 INQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQE 94 (293)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~ 94 (293)
++++|+++++++.++..++|.+|+| +|+|+++++|+++|+++++++++++|||++++|+++++++++|++++..+|...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~al~~-i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~ 141 (303)
T PF08449_consen 63 PLKKYAILSFLFFLASVLSNAALKY-ISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSS 141 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccc
Confidence 3999999999999999999999999 999999999999999999999999999999999999999999999999887654
Q ss_pred ccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhh-----hHH
Q psy348 95 IKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLY-----KNL 169 (293)
Q Consensus 95 ~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~-----~~~ 169 (293)
.+.. +. ++.+ ...|++++++|.+++|.+++++|++.++++.++.|+++|++++++|...+.. ++.
T Consensus 142 ~~~~----~~-~~~~-----~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~ 211 (303)
T PF08449_consen 142 SSSS----NS-SSFS-----SALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEF 211 (303)
T ss_pred cccc----cc-cccc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 3211 00 1111 1359999999999999999999999999999899999999999987654322 232
Q ss_pred HHHHHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcc
Q psy348 170 YEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEF 249 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~l 249 (293)
.+.+... ...|..+..++.+++++++|+..++..++++||++.++++++|+++++++|+++||+++
T Consensus 212 ~~~~~f~--------------~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~ 277 (303)
T PF08449_consen 212 RSAIRFI--------------SAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPL 277 (303)
T ss_pred hHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcC
Confidence 2222221 23455677788888888899999999999999999999999999999999999999999
Q ss_pred cccchhhhhHHHHHHHHHhhh
Q psy348 250 TLYHWTGTALVFVGTVIFTQL 270 (293)
Q Consensus 250 t~~~~iG~~lv~~Gv~~Y~~~ 270 (293)
++.||+|+++++.|..+|++.
T Consensus 278 ~~~~~~G~~lv~~g~~~~~~~ 298 (303)
T PF08449_consen 278 SPLQWIGIVLVFAGIFLYSYA 298 (303)
T ss_pred ChHHHHHHHHhHHHHHHHHHh
Confidence 999999999999999998865
No 3
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.95 E-value=1e-26 Score=215.51 Aligned_cols=238 Identities=16% Similarity=0.227 Sum_probs=180.3
Q ss_pred CCccccccch-hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhh
Q psy348 6 SLPVIIPRHI-NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGI 84 (293)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv 84 (293)
+.|++.+++. +++++++++++.......+.|+++ +++++++++|++.|+++++++++++|||++++++.+++++++|+
T Consensus 103 ~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~-~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv 181 (350)
T PTZ00343 103 KIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGL-GAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGV 181 (350)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence 3455543334 889999999988888888999999 99999999999999999999999999999999999999999999
Q ss_pred hheeeccCccccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC-----CCCcchhhhhhhhhH
Q psy348 85 IICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHG-----KYPYEALYYTHLLPL 159 (293)
Q Consensus 85 ~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~-----~~~~~~~~y~~~~~~ 159 (293)
.+....|.+ ++ ..|++++++|++++|+++++.|+++++.+ .++.+...|..+++.
T Consensus 182 ~l~~~~~~~--------------~~------~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (350)
T PTZ00343 182 ALASVKELH--------------FT------WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIAS 241 (350)
T ss_pred Hheecccch--------------hH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHH
Confidence 998754321 22 67999999999999999999999987653 223334444444443
Q ss_pred HHHHHhh--hHHHHHHHHHhcC-CCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q psy348 160 PAFAFLY--KNLYEHWLIAVNS-TPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFV 236 (293)
Q Consensus 160 ~~~l~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~ 236 (293)
.+.+++. .|..+........ ... + .+.....+..++.+++..++.+...|++++++||+++++.+++||++
T Consensus 242 l~~lp~~~~~e~~~~~~~~~~~~~~~--~----~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~ 315 (350)
T PTZ00343 242 LISLPLVLFFEGKKWVPVWTNYTANM--T----NYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVV 315 (350)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhhcc--c----ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 3322221 1111100000000 000 0 01122334455566777777777788899999999999999999999
Q ss_pred HHhhhheeecCcccccchhhhhHHHHHHHHHhhh
Q psy348 237 SLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQL 270 (293)
Q Consensus 237 t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~~~ 270 (293)
++++|+++|||++|+.+++|.++++.|+.+|+..
T Consensus 316 ~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 316 IIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999865
No 4
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.95 E-value=1.2e-26 Score=211.04 Aligned_cols=227 Identities=12% Similarity=0.170 Sum_probs=172.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI 95 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~ 95 (293)
++.+++.+++...+..++|.+++| +|++++++++++.|+++++++++++|||++++++.+++++++|+++....+.
T Consensus 65 ~~~~~~~g~~~~~~~~~~~~~l~~-~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~--- 140 (302)
T TIGR00817 65 LKLLLPVAIVHTIGHVTSNVSLSK-VAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTEL--- 140 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcc---
Confidence 888999999999999999999999 9999999999999999999999999999999999999999999987643221
Q ss_pred cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q psy348 96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLI 175 (293)
Q Consensus 96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~ 175 (293)
+++ ..|++++++|+++++++.++.|+..++.+.++.+++.|++..+...+++.. ...++...
T Consensus 141 -----------~~~------~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~-~~~~~~~~ 202 (302)
T TIGR00817 141 -----------SFN------WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPA-FITEGPPF 202 (302)
T ss_pred -----------ccc------HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHH-HHHcchHH
Confidence 122 579999999999999999999998774444677888998877654333321 11111100
Q ss_pred Hh--cCCCCCCCcccccccchHHHHHHH-HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCccccc
Q psy348 176 AV--NSTPLPLPSYLSFISIPSIVFYLL-GNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLY 252 (293)
Q Consensus 176 ~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~ 252 (293)
.. ..+... .......+...+ ....+.++.+..++..++++||+++++.++++|++++++|++++||++|+.
T Consensus 203 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~ 276 (302)
T TIGR00817 203 LPHGFMQAIS------GVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ 276 (302)
T ss_pred HHHHHHHhhc------ccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh
Confidence 00 000000 000112222222 222233344456677899999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHHHHhhh
Q psy348 253 HWTGTALVFVGTVIFTQL 270 (293)
Q Consensus 253 ~~iG~~lv~~Gv~~Y~~~ 270 (293)
+++|.++++.|+.+|++.
T Consensus 277 ~~~G~~lil~Gv~l~~~~ 294 (302)
T TIGR00817 277 QVFGTGIAIAGVFLYSRV 294 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998853
No 5
>KOG1580|consensus
Probab=99.95 E-value=1.4e-27 Score=201.65 Aligned_cols=223 Identities=22% Similarity=0.384 Sum_probs=193.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI 95 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~ 95 (293)
.+.|...+.-|.+.++.+|.+++| +++|++.+-+++.|+++|++++++.|++++++++.-++++++|++++..-+....
T Consensus 85 ~~~YaAcs~sYLlAMVssN~Alq~-vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~ 163 (337)
T KOG1580|consen 85 TKMYAACSASYLLAMVSSNQALQY-VPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVG 163 (337)
T ss_pred chHHHHHHHHHHHHHHhccchhcc-cCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccC
Confidence 778999999999999999999999 9999999999999999999999999999999999999999999999998875432
Q ss_pred cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHH---HHHHhhhHHHHH
Q psy348 96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLP---AFAFLYKNLYEH 172 (293)
Q Consensus 96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~---~~l~~~~~~~~~ 172 (293)
+.+|.. ..+|-++.++|.-++++.+..|+++.+.+..+..+||+|+|+++.. ..+.+.||++|.
T Consensus 164 ------g~e~~t-------~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF 230 (337)
T KOG1580|consen 164 ------GAEDKT-------FGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEF 230 (337)
T ss_pred ------CCcccc-------cchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHH
Confidence 111121 3789999999999999999999999998877778999999998853 346678998887
Q ss_pred HHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCccccc
Q psy348 173 WLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLY 252 (293)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~ 252 (293)
+.+..+. |.+|.-+.+.++++.+|+.++|..+...||++.|++++.|+.+|++.|+++|+++++..
T Consensus 231 ~yF~~Rh--------------P~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r 296 (337)
T KOG1580|consen 231 FYFVQRH--------------PYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR 296 (337)
T ss_pred HHHHHhc--------------cHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH
Confidence 6655443 34455455555666688889999999999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHHH
Q psy348 253 HWTGTALVFVGTVI 266 (293)
Q Consensus 253 ~~iG~~lv~~Gv~~ 266 (293)
||+|..+++.|...
T Consensus 297 QwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 297 QWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999854
No 6
>KOG1581|consensus
Probab=99.95 E-value=1.1e-26 Score=203.10 Aligned_cols=238 Identities=19% Similarity=0.308 Sum_probs=198.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheee
Q psy348 10 IIPRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTI 89 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~ 89 (293)
.+.+++|++|...++....+..|.+.||+| +|.|++.+.|++..+++|+++.+++|+|++.++++..+++.+|+.++..
T Consensus 77 ~~~~apl~~y~~is~tn~~s~~~~yeaLKy-vSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l 155 (327)
T KOG1581|consen 77 LSGVAPLYKYSLISFTNTLSSWCGYEALKY-VSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSL 155 (327)
T ss_pred CCCCCchhHHhHHHHHhhcchHHHHHHHHh-ccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEE
Confidence 344555999999999999999999999999 9999999999999999999999999999999999999999999999998
Q ss_pred ccCccccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHH---HHHhh
Q psy348 90 MSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPA---FAFLY 166 (293)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~---~l~~~ 166 (293)
.+.+.. +.+. + ++.+ ..|+.++..+.+++++.+..|+++.++++.+++++|+|+|+++... .++..
T Consensus 156 ~~~s~s-~~~~-g---~~ns------~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~q 224 (327)
T KOG1581|consen 156 FPNSDS-SSKS-G---RENS------PIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQ 224 (327)
T ss_pred ecCCCC-cccc-C---CCCc------hHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcC
Confidence 865441 1111 1 1223 7899999999999999999999999999999999999999987532 23333
Q ss_pred hHHHHHHHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeec
Q psy348 167 KNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQ 246 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fg 246 (293)
+.+.+.+.+.. ..|.++..+++.++++..|+..+|+.+++.||++.+.+.+.|+++++++|.+.||
T Consensus 225 g~~~~av~F~~--------------~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~ 290 (327)
T KOG1581|consen 225 GHLLPAVSFIK--------------EHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFG 290 (327)
T ss_pred CCCchHHHHHH--------------cChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33334443332 2445666676666666688889999999999999999999999999999999999
Q ss_pred CcccccchhhhhHHHHHHHHHhhhccccc
Q psy348 247 NEFTLYHWTGTALVFVGTVIFTQLVPSLM 275 (293)
Q Consensus 247 e~lt~~~~iG~~lv~~Gv~~Y~~~~~k~~ 275 (293)
++++..||+|..+++.|..+ ++..|.+
T Consensus 291 h~~s~~q~~g~~iVFg~i~l--~~~~k~~ 317 (327)
T KOG1581|consen 291 HPLSSEQWLGVLIVFGGIFL--EILLKKK 317 (327)
T ss_pred CccchhhccCeeeehHHHHH--HHHHHHh
Confidence 99999999999999999855 6666655
No 7
>KOG1441|consensus
Probab=99.94 E-value=1.2e-26 Score=209.06 Aligned_cols=223 Identities=17% Similarity=0.295 Sum_probs=185.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI 95 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~ 95 (293)
++..+++++++..+.+++|.+++| +|+|++|++|+++|+++.++++++.+|+++++.++++++++.|+++.+.+|.+
T Consensus 83 ~~~llpl~~~~~~~~v~~n~Sl~~-v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~-- 159 (316)
T KOG1441|consen 83 LRTLLPLGLVFCISHVLGNVSLSY-VPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELS-- 159 (316)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhc-cchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecccc--
Confidence 999999999999999999999999 99999999999999999999999999999999999999999999999987753
Q ss_pred cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HcCCCCcchhhhhhhhhHHHHH-HhhhHHHHH
Q psy348 96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYK--THGKYPYEALYYTHLLPLPAFA-FLYKNLYEH 172 (293)
Q Consensus 96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~--~~~~~~~~~~~y~~~~~~~~~l-~~~~~~~~~ 172 (293)
++ ..|.+..+++.+..++++++.+++++ +.+.++.+++.|+..++...++ ++. +..+.
T Consensus 160 ------------fn------~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~-~~~~~ 220 (316)
T KOG1441|consen 160 ------------FN------LFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFL-DYVEG 220 (316)
T ss_pred ------------cc------HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchH-hhhcc
Confidence 23 78999999999999999999999995 4556788999998877755444 221 11111
Q ss_pred HHH-HhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccc
Q psy348 173 WLI-AVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTL 251 (293)
Q Consensus 173 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~ 251 (293)
... ..... .+... .+. .+.+.+.+++.|...|.+++++||+|.++.+++|.++.++.|+++|+|++|+
T Consensus 221 ~~~~~~~~~---------~~~~~-~~~-~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~ 289 (316)
T KOG1441|consen 221 NKFVGFLTA---------PWFVT-FLI-LLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTF 289 (316)
T ss_pred cceeeeecc---------ccchh-hHH-HHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCch
Confidence 000 00000 11121 222 3333477888898999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHhhhc
Q psy348 252 YHWTGTALVFVGTVIFTQLV 271 (293)
Q Consensus 252 ~~~iG~~lv~~Gv~~Y~~~~ 271 (293)
.+..|.++.+.|+++|++..
T Consensus 290 ~n~~G~~iai~Gv~~Y~~~k 309 (316)
T KOG1441|consen 290 LNALGYAIAILGVFLYSRAK 309 (316)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999873
No 8
>KOG1582|consensus
Probab=99.93 E-value=4.9e-25 Score=189.64 Aligned_cols=226 Identities=25% Similarity=0.350 Sum_probs=199.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI 95 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~ 95 (293)
||.|..++++..+++.++|-++.| .++|++.++|+|..+++++.+.++-++|++...+.+..+.++|++++...|.+..
T Consensus 106 ~rtY~~la~~t~gtmGLsn~SlgY-LNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~s 184 (367)
T KOG1582|consen 106 WRTYVILAFLTVGTMGLSNGSLGY-LNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTS 184 (367)
T ss_pred hhHhhhhHhhhhhccccCcCcccc-ccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccC
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999987642
Q ss_pred cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHH---HHhhhHHHHH
Q psy348 96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAF---AFLYKNLYEH 172 (293)
Q Consensus 96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~---l~~~~~~~~~ 172 (293)
+.++ +.|+.++-.|.+++|..+..||+.++.++.++.|+++|+..++.|.. +.+.|++.+.
T Consensus 185 ----------PNF~------~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a 248 (367)
T KOG1582|consen 185 ----------PNFN------LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSA 248 (367)
T ss_pred ----------CCcc------eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhh
Confidence 2355 89999999999999999999999999999888999999999887642 3457888887
Q ss_pred HHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCccccc
Q psy348 173 WLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLY 252 (293)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~ 252 (293)
+++-.++|. ....+.+.-++.+|+|+..+-..++..+|.++..+++.|+..|+++|+++|..|+|..
T Consensus 249 ~~fcaehp~-------------~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~q 315 (367)
T KOG1582|consen 249 WTFCAEHPV-------------RTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQ 315 (367)
T ss_pred hHHHHhCcH-------------hHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHH
Confidence 776544331 1344555556778899888888899999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHHHHhhhccc
Q psy348 253 HWTGTALVFVGTVIFTQLVPS 273 (293)
Q Consensus 253 ~~iG~~lv~~Gv~~Y~~~~~k 273 (293)
+.-|..+++.|+++ +.++|
T Consensus 316 y~~~gllv~lgI~L--n~ysk 334 (367)
T KOG1582|consen 316 YVWSGLLVVLGIYL--NMYSK 334 (367)
T ss_pred HhhhhHHHHHHHHh--hcccC
Confidence 99999999999844 77766
No 9
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.92 E-value=4.8e-24 Score=194.32 Aligned_cols=232 Identities=18% Similarity=0.195 Sum_probs=175.5
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCc
Q psy348 14 HINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQ 93 (293)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~ 93 (293)
+++++|++++++...++.+.+.|++| +|++..+++.+++.+++++++++++|+|+++.|++|++++++|++++...|..
T Consensus 77 ~~~w~y~lla~~Dv~aN~~~v~a~~y-TsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 77 RPWWKYFLLALLDVEANYLVVLAYQY-TSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhc-ccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 34999999999999999999999999 99999999999999999999999999999999999999999999999988865
Q ss_pred cccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHH
Q psy348 94 EIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHW 173 (293)
Q Consensus 94 ~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 173 (293)
.+++. ++ .+. ...|++++++++.++|+++|++|++.++.+ ..+.+....++++.+..+.. .+.| .
T Consensus 156 ~~~~~--~~---~~~------~i~GDll~l~~a~lya~~nV~~E~~v~~~~--~~~~lg~~Glfg~ii~~iq~-~ile-~ 220 (334)
T PF06027_consen 156 SGSDS--SS---GSN------PILGDLLALLGAILYAVSNVLEEKLVKKAP--RVEFLGMLGLFGFIISGIQL-AILE-R 220 (334)
T ss_pred ccccC--CC---CCc------cchhHHHHHHHHHHHHHHHHHHHHhcccCC--HHHHHHHHHHHHHHHHHHHH-Hhee-h
Confidence 42211 00 111 289999999999999999999999988764 34555555555543322211 1111 1
Q ss_pred HHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccc
Q psy348 174 LIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYH 253 (293)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~ 253 (293)
...+. . .+. +..+.+.+..+++.++....+-..++..||+..++......+.+++.++++||+++++..
T Consensus 221 ~~i~~---~-------~w~-~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly 289 (334)
T PF06027_consen 221 SGIES---I-------HWT-SQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLY 289 (334)
T ss_pred hhhhc---c-------CCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHH
Confidence 11111 1 111 122333333333333333344457899999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHhhhcc
Q psy348 254 WTGTALVFVGTVIFTQLVP 272 (293)
Q Consensus 254 ~iG~~lv~~Gv~~Y~~~~~ 272 (293)
++|.++++.|.++|+...+
T Consensus 290 ~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 290 ILAFALIIIGFVVYNLAES 308 (334)
T ss_pred HHHHHHHHHHhheEEccCC
Confidence 9999999999999985433
No 10
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.90 E-value=2.4e-22 Score=186.19 Aligned_cols=248 Identities=11% Similarity=0.084 Sum_probs=165.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHH------hccccChhhhhHHhhhhhhhhheee
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIII------LKKVYTLDKYVSVIMITLGIIICTI 89 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~------l~~~~~~~~~~~i~l~~~Gv~i~~~ 89 (293)
+..+...+++......+.+.+++| +|++...++.++.|++++++++++ +|||+++++++|+++.++|+.+...
T Consensus 78 ~~~l~l~g~~g~~~~~~~~~gl~~-tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 78 LSKIGLLGFLGSMYVITGYIGIEY-SNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 445666666554566689999999 999999999999999999999999 6999999999999999999998765
Q ss_pred ccCccccccC--------CCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhh-HH
Q psy348 90 MSSQEIKKYG--------VSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLP-LP 160 (293)
Q Consensus 90 ~~~~~~~~~~--------~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~-~~ 160 (293)
.+.......+ ....+ +..+ +-+...|++++++|+++||+|.+.+++..++++. .....++...++ ++
T Consensus 157 ~~g~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~-~~~~t~~~~~~~~~~ 232 (358)
T PLN00411 157 YHGPRVFVASSPPYLNFRQLSPP-LSSS--NSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA-AFTVSFLYTVCVSIV 232 (358)
T ss_pred ccCcccccccccccccccccccc-cCCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-HhHHHHHHHHHHHHH
Confidence 3221100000 00000 0000 0013679999999999999999999999888754 223333433332 23
Q ss_pred HHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhh
Q psy348 161 AFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLF 240 (293)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~il 240 (293)
...+. ...+.. ....+.. .+ ....+..+. .++...++...+++++++.+|.++++..++.|+++.++
T Consensus 233 ~~~~~--l~~~~~----~~~~~~~-----~~-~~~~~~i~y-~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~ll 299 (358)
T PLN00411 233 TSMIG--LVVEKN----NPSVWII-----HF-DITLITIVT-MAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVM 299 (358)
T ss_pred HHHHH--HHHccC----Cccccee-----cc-chHHHHHHH-HHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHH
Confidence 22210 111100 0000000 01 112222222 22222356667888999999999999999999999999
Q ss_pred hheeecCcccccchhhhhHHHHHHHHHhhhccccccccccccc
Q psy348 241 SIVYFQNEFTLYHWTGTALVFVGTVIFTQLVPSLMGMFGEKTK 283 (293)
Q Consensus 241 s~~~fge~lt~~~~iG~~lv~~Gv~~Y~~~~~k~~~~~~~~~~ 283 (293)
|++++||++++.+++|.++++.|+++-+ ++|++|-++|.+.
T Consensus 300 g~l~LgE~lt~~~~iG~~LIl~Gv~l~~--~~~~~~~~~~~~~ 340 (358)
T PLN00411 300 GAIFLNDSLYLGCLIGGILITLGFYAVM--WGKANEEKDQLLS 340 (358)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHH--hhhhhhhhhcccC
Confidence 9999999999999999999999997743 4454443333333
No 11
>KOG1442|consensus
Probab=99.87 E-value=2e-23 Score=180.02 Aligned_cols=245 Identities=16% Similarity=0.227 Sum_probs=188.9
Q ss_pred CCccccccch-hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhh
Q psy348 6 SLPVIIPRHI-NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGI 84 (293)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv 84 (293)
+.|.++-+-. .|+.+++++.+.+++.++|+||+| +++++|++-|++..+|+++++++++|+|.+.....+|.+++.|.
T Consensus 91 tfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~y-VgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF 169 (347)
T KOG1442|consen 91 TFPSLQLDLATARQVLPLSVVFILMISFNNLCLKY-VGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGF 169 (347)
T ss_pred ccCcccccHHHHHhhcchhheeeeehhccceehhh-cceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehh
Confidence 3444554433 889999999999999999999999 99999999999999999999999999999999999999999998
Q ss_pred hheeeccCccccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHH
Q psy348 85 IICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAF 164 (293)
Q Consensus 85 ~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~ 164 (293)
-+-.-.|... +..+ ..|.++.+.|.++-|+..++.++.....+..-+.+.+|+|..+..++++
T Consensus 170 ~lGvdqE~~~-----------~~ls------~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflp 232 (347)
T KOG1442|consen 170 GLGVDQEGST-----------GTLS------WIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLP 232 (347)
T ss_pred eecccccccc-----------Cccc------hhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHH
Confidence 6554333211 2233 6899999999999999999999777666656688999999888665544
Q ss_pred ---hhhHHHHHHHHHhcCCCCCCCcccccccch--HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh
Q psy348 165 ---LYKNLYEHWLIAVNSTPLPLPSYLSFISIP--SIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLL 239 (293)
Q Consensus 165 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~i 239 (293)
+.|++.+.+. + | ..| ..|..+.+++++++..+..-..-++.+||+|+++.++.|.+...+
T Consensus 233 ll~lnge~~~v~~-------~--~------~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTv 297 (347)
T KOG1442|consen 233 LLILNGEFQAVVG-------F--P------HLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTV 297 (347)
T ss_pred HHHHcchHHHHcC-------c--c------cchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHH
Confidence 3444433221 1 0 122 345555566666643222223348999999999999999999999
Q ss_pred hhheeecCcccccchhhhhHHHHHHHHHhhhccccccccccccchh
Q psy348 240 FSIVYFQNEFTLYHWTGTALVFVGTVIFTQLVPSLMGMFGEKTKKS 285 (293)
Q Consensus 240 ls~~~fge~lt~~~~iG~~lv~~Gv~~Y~~~~~k~~~~~~~~~~~~ 285 (293)
+++.+.+|..+...|-|-.+++.|...|++. |.+|++.+-...+
T Consensus 298 lAv~~y~E~ks~lwwtsn~~vLvgs~~YT~v--k~~em~~~~~~~s 341 (347)
T KOG1442|consen 298 LAVAYYSETKSGLWWTSNIVVLVGSLAYTLV--KEHEMRKASAQRS 341 (347)
T ss_pred HHHHHHHHHhhhheeeeeEEEEehhHHHHHH--HHHHHHhhccCCC
Confidence 9999999999999999999999999999987 4444443333333
No 12
>KOG1444|consensus
Probab=99.86 E-value=9.5e-21 Score=167.79 Aligned_cols=223 Identities=16% Similarity=0.251 Sum_probs=188.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI 95 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~ 95 (293)
.|+++|++++|.++.+.+..+++| +++|.++++|..+|++|++...+++|+|+++..|.++..+.+|.......|.+.
T Consensus 77 ~kk~~P~~~lf~~~i~t~~~slk~-lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf- 154 (314)
T KOG1444|consen 77 AKKWFPVSLLFVGMLFTGSKSLKY-LNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSF- 154 (314)
T ss_pred HHHHccHHHHHHHHHHHccccccc-cCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccccee-
Confidence 889999999999999999999999 999999999999999999999999999999999999999999998888776432
Q ss_pred cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHh---hhHHHHH
Q psy348 96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFL---YKNLYEH 172 (293)
Q Consensus 96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~---~~~~~~~ 172 (293)
+ ..|+.+++.+++..+.+.++.|+..+..+.+.+++++|.++.++|.+.+. .+|.. .
T Consensus 155 -------------~------~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~-~ 214 (314)
T KOG1444|consen 155 -------------N------LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELD-A 214 (314)
T ss_pred -------------c------chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchH-H
Confidence 2 56999999999999999999999888777777899999999998765443 34432 1
Q ss_pred HHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCccccc
Q psy348 173 WLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLY 252 (293)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~ 252 (293)
.. .+.+ .+..+..+..+.++|+.++.-.++.+++.+.+||++.+++|......+.+.+.+++|+++++.
T Consensus 215 l~--~~~~---------~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~ 283 (314)
T KOG1444|consen 215 LS--LNFD---------NWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL 283 (314)
T ss_pred HH--hhcc---------cccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh
Confidence 11 1111 133556777888888888777778888999999999999996666666677777777799999
Q ss_pred chhhhhHHHHHHHHHhhhc
Q psy348 253 HWTGTALVFVGTVIFTQLV 271 (293)
Q Consensus 253 ~~iG~~lv~~Gv~~Y~~~~ 271 (293)
..+|..+.+.|.++|++..
T Consensus 284 n~~gll~~~~ggv~Y~~~~ 302 (314)
T KOG1444|consen 284 NVIGLLVGFFGGVLYSYAT 302 (314)
T ss_pred hhHHHHHHhhhhhHHhhhh
Confidence 9999999999999999763
No 13
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.86 E-value=7.3e-20 Score=166.28 Aligned_cols=223 Identities=13% Similarity=0.147 Sum_probs=154.0
Q ss_pred hHHHHHHHHH-HHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCcc
Q psy348 16 NQHQIELVVM-FFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQE 94 (293)
Q Consensus 16 ~~~~~~~~~~-~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~ 94 (293)
++..+..+++ ..+...+.+.+++|+++++...++.++.|+++++++++++|||+++++++++++.++|+.+...++...
T Consensus 58 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~ 137 (299)
T PRK11453 58 LNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG 137 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC
Confidence 4444444443 234445677888874578899999999999999999999999999999999999999999887442111
Q ss_pred ccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC-CCcchhhhhhhhhH-HHHHHhhhHHHHH
Q psy348 95 IKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGK-YPYEALYYTHLLPL-PAFAFLYKNLYEH 172 (293)
Q Consensus 95 ~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~-~~~~~~~y~~~~~~-~~~l~~~~~~~~~ 172 (293)
.+.+ ..|+++.++++++++.+.+++++..++++. .......+....+. |.... . ...+.
T Consensus 138 -----------~~~~------~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~ 198 (299)
T PRK11453 138 -----------QHVA------MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVA-S-LILDG 198 (299)
T ss_pred -----------cchh------HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHH-H-HHhcC
Confidence 1111 579999999999999999999998665432 11122233333322 22111 0 00110
Q ss_pred HHHHhcCCCCCCCcccccccchHHHHHH-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccc
Q psy348 173 WLIAVNSTPLPLPSYLSFISIPSIVFYL-LGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTL 251 (293)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~ 251 (293)
.... .+++. ..++..|..+ ....++..++...++..+++.++.+.++...++|+++.++|++++||+++.
T Consensus 199 ~~~~--~~~~~-------~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~ 269 (299)
T PRK11453 199 SATM--IHSLV-------TIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTG 269 (299)
T ss_pred chhh--hhhhc-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 0000 00000 0122333333 333344446666777889999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHH
Q psy348 252 YHWTGTALVFVGTVI 266 (293)
Q Consensus 252 ~~~iG~~lv~~Gv~~ 266 (293)
.+++|.++++.|+++
T Consensus 270 ~~~iG~~lI~~gv~l 284 (299)
T PRK11453 270 LQFLGAVLIMAGLYI 284 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999966
No 14
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.84 E-value=2e-19 Score=159.53 Aligned_cols=212 Identities=11% Similarity=-0.021 Sum_probs=160.0
Q ss_pred hHHHHHHHHH-HHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCcc
Q psy348 16 NQHQIELVVM-FFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQE 94 (293)
Q Consensus 16 ~~~~~~~~~~-~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~ 94 (293)
++.++..+.+ ..++..+.+.|++| ++++...++.++.|+++++++.+++|||++++++.+++++++|+.+...++..
T Consensus 46 ~~~~~~~~~~~~~l~~~~~~~a~~~-~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~- 123 (260)
T TIGR00950 46 LLRLLLLGALQIGVFYVLYFVAVKR-LPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNL- 123 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcc-
Confidence 5555666554 67888999999999 99999999999999999999999999999999999999999999997644311
Q ss_pred ccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHH
Q psy348 95 IKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWL 174 (293)
Q Consensus 95 ~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~ 174 (293)
+ .+ ..|+.+.++++++++.+.++.|+..++.+.++.....+...++....++.. .
T Consensus 124 -----------~-~~------~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~------ 178 (260)
T TIGR00950 124 -----------S-IN------PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFA-W------ 178 (260)
T ss_pred -----------c-cc------HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHH-H------
Confidence 1 11 679999999999999999999998876654333333334444433322211 0
Q ss_pred HHhcCCCCCCCcccccccchHHHHHH-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccc
Q psy348 175 IAVNSTPLPLPSYLSFISIPSIVFYL-LGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYH 253 (293)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~ 253 (293)
. ..+... . .+..+..+ ....+...++...++.++++.++.++++...++|+++.+++++++||++++.+
T Consensus 179 -~-~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~ 248 (260)
T TIGR00950 179 -F-LGPNPQ-------A-LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQ 248 (260)
T ss_pred -h-cCCCCC-------c-chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 0 011110 1 12233322 23333344666777889999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHH
Q psy348 254 WTGTALVFVGT 264 (293)
Q Consensus 254 ~iG~~lv~~Gv 264 (293)
++|.++++.|+
T Consensus 249 ~~G~~li~~g~ 259 (260)
T TIGR00950 249 LIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHhc
Confidence 99999999986
No 15
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.83 E-value=1.8e-19 Score=158.60 Aligned_cols=228 Identities=14% Similarity=0.162 Sum_probs=164.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI 95 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~ 95 (293)
..++.+++++|...+.+.+.++++ +|++++|++++++.++|++++++++|||.+++||.++++.++|+++...++....
T Consensus 17 ~~~~~vPA~lY~~qn~L~~~al~~-ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~ 95 (244)
T PF04142_consen 17 TLKLAVPALLYAIQNNLQFVALSY-LDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSS 95 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccc
Confidence 678889999999999999999998 9999999999999999999999999999999999999999999999987765432
Q ss_pred cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q psy348 96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLI 175 (293)
Q Consensus 96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~ 175 (293)
+....+..++++ .......|+++++++++++++.+|+.|+++|+.+.+.+.-......++++..++. ....+...
T Consensus 96 ~~~~~~~~~~~~---~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~--~~~~~~~~ 170 (244)
T PF04142_consen 96 DNSSSSSVHHDA---SNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLA--LLLSDGSA 170 (244)
T ss_pred cccccccccccc---ccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH--Hhcccccc
Confidence 111000000000 0112379999999999999999999999999876433222222233343332221 00111111
Q ss_pred HhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchh
Q psy348 176 AVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWT 255 (293)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~i 255 (293)
..+.. ++. ++ ++..|..++..++++. .+-..+|+.+....+....+.-+++.++++++||.++|....+
T Consensus 171 ~~~~g-----~f~-G~-~~~~~~~i~~~a~gGl----lva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~l 239 (244)
T PF04142_consen 171 ISESG-----FFH-GY-SWWVWIVIFLQAIGGL----LVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLL 239 (244)
T ss_pred cccCC-----chh-hc-chHHHHHHHHHHHhhH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhh
Confidence 11111 110 11 2345666666666552 2335799999999999999999999999999999999999999
Q ss_pred hhhHH
Q psy348 256 GTALV 260 (293)
Q Consensus 256 G~~lv 260 (293)
|..+|
T Consensus 240 g~~~V 244 (244)
T PF04142_consen 240 GAALV 244 (244)
T ss_pred heecC
Confidence 98764
No 16
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.83 E-value=2.7e-19 Score=162.21 Aligned_cols=220 Identities=9% Similarity=0.044 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhcc---cchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCcc
Q psy348 18 HQIELVVMFFITNVCNNYAFDF---NIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQE 94 (293)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~L~y---~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~ 94 (293)
..+.-++.+.....+.+.+++| +.++....++.++.|+++++++++++|||++++++.++++.++|+++...++...
T Consensus 63 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~ 142 (295)
T PRK11689 63 YLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGL 142 (295)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccc
Confidence 3333344455667777777765 1466677899999999999999999999999999999999999999987654211
Q ss_pred ccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHH
Q psy348 95 IKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWL 174 (293)
Q Consensus 95 ~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~ 174 (293)
.. .+. ..+ .+.+ ..|++++++|++++|.++++.|+..++++ +... +....+..+ .+. ...+
T Consensus 143 ~~-~~~-~~~-~~~~------~~G~~~~l~aa~~~A~~~v~~k~~~~~~~--~~~~--~~~~~~~~l-~~~--~~~~--- 203 (295)
T PRK11689 143 SL-AEL-INN-IASN------PLSYGLAFIGAFIWAAYCNVTRKYARGKN--GITL--FFILTALAL-WIK--YFLS--- 203 (295)
T ss_pred hh-hhh-hhc-cccC------hHHHHHHHHHHHHHHHHHHHHhhccCCCC--chhH--HHHHHHHHH-HHH--HHHh---
Confidence 00 000 000 0111 56999999999999999999998765443 3222 111111111 110 0000
Q ss_pred HHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccch
Q psy348 175 IAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHW 254 (293)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~ 254 (293)
..+... ..+..|..++..++...+++..+++.+++.+|.+.++..+++|+++++++++++||++++.++
T Consensus 204 ---~~~~~~--------~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~ 272 (295)
T PRK11689 204 ---PQPAMV--------FSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFW 272 (295)
T ss_pred ---cCcccc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHH
Confidence 111110 122344444444444556777888999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHH
Q psy348 255 TGTALVFVGTVIF 267 (293)
Q Consensus 255 iG~~lv~~Gv~~Y 267 (293)
+|.++++.|+++-
T Consensus 273 iG~~lI~~gv~~~ 285 (295)
T PRK11689 273 QGVAMVTAGSLLC 285 (295)
T ss_pred HHHHHHHHhHHHH
Confidence 9999999998663
No 17
>KOG1443|consensus
Probab=99.81 E-value=1.4e-19 Score=158.72 Aligned_cols=227 Identities=15% Similarity=0.301 Sum_probs=174.6
Q ss_pred hHHHH----HHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348 16 NQHQI----ELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS 91 (293)
Q Consensus 16 ~~~~~----~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~ 91 (293)
|++++ +.++.-.+...++|++++| ++.++|+|.|+++++|+.+++.+|--||+++.-.+.++++-+|+.++..-+
T Consensus 80 w~~~Lr~~aPtalata~DIGLSN~sl~y-VtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks 158 (349)
T KOG1443|consen 80 WRDYLRRLAPTALATALDIGLSNWSLEY-VTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS 158 (349)
T ss_pred HHHHHHHhhhhhhhhhcccccccceeee-eeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence 66666 9999999999999999999 999999999999999999999999999999999999999999999999876
Q ss_pred CccccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC---CCCcchhhhhhhh-hHHHHHHhhh
Q psy348 92 SQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHG---KYPYEALYYTHLL-PLPAFAFLYK 167 (293)
Q Consensus 92 ~~~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~---~~~~~~~~y~~~~-~~~~~l~~~~ 167 (293)
.+ ++ ..|..++..|.++.++.+.+.+.++++.+ .+|..++++.+.. +++++. .+
T Consensus 159 Tq--------------f~------i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~--~~ 216 (349)
T KOG1443|consen 159 TQ--------------FN------IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLP--LS 216 (349)
T ss_pred cc--------------ee------ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHH--HH
Confidence 43 33 78999999999999999999999998876 3677777765543 222211 11
Q ss_pred HHHHHHHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecC
Q psy348 168 NLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQN 247 (293)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge 247 (293)
.+.|+......++.+. .+. ..........+.+.+..+++.-...|..+.+++.++.|+++..+.+.+.+++..+.+|
T Consensus 217 l~fEG~~~~~~s~~f~--~~d-~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d 293 (349)
T KOG1443|consen 217 LLFEGLHLITSSSIFR--FQD-TGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKD 293 (349)
T ss_pred HHHcccccchhhhHHH--hcC-ccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhc
Confidence 2223222111111110 000 0011122334444455555444556778999999999999999999999999999999
Q ss_pred cccccchhhhhHHHHHHHHHh
Q psy348 248 EFTLYHWTGTALVFVGTVIFT 268 (293)
Q Consensus 248 ~lt~~~~iG~~lv~~Gv~~Y~ 268 (293)
.++..+|.|..+++.|+..|.
T Consensus 294 ~ls~lN~~Gl~i~~agi~~~~ 314 (349)
T KOG1443|consen 294 QLSLLNWLGLAICLAGILLHR 314 (349)
T ss_pred chhhhHHHHHHHHHHHHHHhc
Confidence 999999999999999999884
No 18
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.81 E-value=1e-18 Score=158.51 Aligned_cols=206 Identities=14% Similarity=0.138 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccccccCC
Q psy348 21 ELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYGV 100 (293)
Q Consensus 21 ~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~~~~~ 100 (293)
.-++....+..+.++++++ ++++...++.++.|+++++++++++|||++++++.++++.++|+++....+.
T Consensus 78 ~~~~~~~~~~~~~~~a~~~-~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-------- 148 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNN-HHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-------- 148 (296)
T ss_pred HHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC--------
Confidence 3344577789999999998 9999999999999999999999999999999999999999999998753211
Q ss_pred CccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCC
Q psy348 101 SDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNST 180 (293)
Q Consensus 101 ~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (293)
+ . ..+.+++++++|.|.++.|+...+ +.......+....+...+.. .. .. ..+
T Consensus 149 -----~---------~--~~~~l~aa~~~a~~~i~~r~~~~~----~~~~~~~~~~~~~~~~~~~~---~~---~~-~~~ 201 (296)
T PRK15430 149 -----S---------L--PIIALGLAFSFAFYGLVRKKIAVE----AQTGMLIETMWLLPVAAIYL---FA---IA-DSS 201 (296)
T ss_pred -----C---------c--cHHHHHHHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHHHHHHHH---HH---Hc-cCC
Confidence 0 1 134677889999999998775321 11111222222222211110 00 00 000
Q ss_pred CCCCCcccccccchH-HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhH
Q psy348 181 PLPLPSYLSFISIPS-IVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTAL 259 (293)
Q Consensus 181 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~l 259 (293)
.. +. ...+. .+..++..++.+.+++.+++..+++.+|.+.++...++|+++.++|++++||++++.+++|.++
T Consensus 202 ~~--~~----~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~l 275 (296)
T PRK15430 202 TS--HM----GQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAF 275 (296)
T ss_pred cc--cc----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 00 00 01121 2233333333344667788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy348 260 VFVGTVIFT 268 (293)
Q Consensus 260 v~~Gv~~Y~ 268 (293)
++.|+.+..
T Consensus 276 I~~~~~v~~ 284 (296)
T PRK15430 276 IWVALAIFV 284 (296)
T ss_pred HHHHHHHHH
Confidence 988776654
No 19
>KOG2234|consensus
Probab=99.79 E-value=2.7e-18 Score=154.34 Aligned_cols=228 Identities=14% Similarity=0.212 Sum_probs=170.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI 95 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~ 95 (293)
..+..+++++|...|.+.+.++.+ .|+++|++..+++...|++++.++++||.+++||.++++.++|+++......++.
T Consensus 92 ~lk~~vPa~iYalqNnl~yval~~-ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~ 170 (345)
T KOG2234|consen 92 TLKVSVPALIYALQNNLQYVALSN-LDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPT 170 (345)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhc-CCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 667889999999999999999997 9999999999999999999999999999999999999999999999985443321
Q ss_pred cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCc--chhhhhhhhhHHHHHH-hhhHHHHH
Q psy348 96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPY--EALYYTHLLPLPAFAF-LYKNLYEH 172 (293)
Q Consensus 96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~--~~~~y~~~~~~~~~l~-~~~~~~~~ 172 (293)
.+. ++..++.+ ..|...++.+++.+++.+++.|+++|+.+.+.+ ++..| .++++..+. ... .+
T Consensus 171 ~a~---~~~~~~n~------~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~--~~g~~f~~l~~~~---~d 236 (345)
T KOG2234|consen 171 GAK---SESSAQNP------FLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLY--FFGILFNLLTILL---QD 236 (345)
T ss_pred Ccc---CCCcccch------hhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHHHHHHHHHhh---cc
Confidence 110 01101122 799999999999999999999999997764322 12222 233322111 111 11
Q ss_pred HHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCccccc
Q psy348 173 WLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLY 252 (293)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~ 252 (293)
.... .+. .++ +++ +...|..++.+++++ ++ +...+++.+.........+..+++.+.|+.+||.++|..
T Consensus 237 ~~~i---~~~--gff-~G~-s~~vw~vVl~~a~gG-Ll---vs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~ 305 (345)
T KOG2234|consen 237 GEAI---NEY--GFF-YGY-SSIVWLVVLLNAVGG-LL---VSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLY 305 (345)
T ss_pred cccc---ccC--Ccc-ccc-cHHHHHHHHHHhccc-hh---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence 1000 000 111 012 334677777887777 32 335799999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHHHHhh
Q psy348 253 HWTGTALVFVGTVIFTQ 269 (293)
Q Consensus 253 ~~iG~~lv~~Gv~~Y~~ 269 (293)
..+|+.+|+..+.+|+.
T Consensus 306 F~lG~~lVi~Si~lY~~ 322 (345)
T KOG2234|consen 306 FLLGALLVILSIFLYSL 322 (345)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999999994
No 20
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.79 E-value=4.2e-18 Score=154.19 Aligned_cols=214 Identities=12% Similarity=0.052 Sum_probs=154.9
Q ss_pred hHHHHHHHHHH-HHHHHhhhhhh-cccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCc
Q psy348 16 NQHQIELVVMF-FITNVCNNYAF-DFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQ 93 (293)
Q Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~L-~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~ 93 (293)
++.....+.+. .....+.+.+. ++ ++++...++.++.|+++++++++ +|||++++++.++++.++|+.+...++..
T Consensus 68 ~~~~~~~g~~~~~~~~~~~~~~~~~~-~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~ 145 (292)
T PRK11272 68 WLNAALIGLLLLAVGNGMVTVAEHQN-VPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL 145 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc
Confidence 55566666653 45677888888 87 99999999999999999999975 69999999999999999999887543211
Q ss_pred cccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHH
Q psy348 94 EIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHW 173 (293)
Q Consensus 94 ~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 173 (293)
+ .+ ..|+++.+++++++|.+.+..|+..++. +.....+....+.+...+... .
T Consensus 146 ------------~-~~------~~G~l~~l~a~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~---- 198 (292)
T PRK11272 146 ------------S-GN------PWGAILILIASASWAFGSVWSSRLPLPV---GMMAGAAEMLAAGVVLLIASL-L---- 198 (292)
T ss_pred ------------c-cc------hHHHHHHHHHHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHH-H----
Confidence 0 11 5799999999999999999998764321 223344444444333222110 0
Q ss_pred HHHhcCCCCCCCcccccccchHHHHHH-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCccccc
Q psy348 174 LIAVNSTPLPLPSYLSFISIPSIVFYL-LGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLY 252 (293)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~ 252 (293)
...+... ..++..|..+ ....++..++...+++.+++.++.+.++...++|+.+.+++++++||++|+.
T Consensus 199 ---~~~~~~~-------~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~ 268 (292)
T PRK11272 199 ---SGERLTA-------LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI 268 (292)
T ss_pred ---cCCcccc-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 0111000 0122233333 3333344466677888999999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHHHHh
Q psy348 253 HWTGTALVFVGTVIFT 268 (293)
Q Consensus 253 ~~iG~~lv~~Gv~~Y~ 268 (293)
+++|.++++.|+++.+
T Consensus 269 ~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 269 EWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999997743
No 21
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.77 E-value=5.8e-17 Score=146.84 Aligned_cols=209 Identities=13% Similarity=0.055 Sum_probs=148.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI 95 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~ 95 (293)
++..+..+.++...+.+.+++++| +|++...++..+.|+++++++ +||+++. ..+.+.++|+.+....+...
T Consensus 71 ~~~~~~~g~~~~~~~~~~~~al~~-~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~- 142 (293)
T PRK10532 71 RLPLLFYGVSLGGMNYLFYLSIQT-VPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDV- 142 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCc-
Confidence 566667777777888889999998 999999999999999998876 3666544 44667789998876332111
Q ss_pred cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q psy348 96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLI 175 (293)
Q Consensus 96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~ 175 (293)
++.+ ..|+++.+++++++|.+.+..++..++++ +... .+...++.....+.. .
T Consensus 143 ----------~~~~------~~G~ll~l~aa~~~a~~~v~~r~~~~~~~--~~~~-~~~~~~~~~~l~~~~--------~ 195 (293)
T PRK10532 143 ----------SHVD------LTGAALALGAGACWAIYILSGQRAGAEHG--PATV-AIGSLIAALIFVPIG--------A 195 (293)
T ss_pred ----------ccCC------hHHHHHHHHHHHHHHHHHHHHHHHhccCC--chHH-HHHHHHHHHHHHHHH--------H
Confidence 1112 57999999999999999999998876554 3333 333333322211110 0
Q ss_pred HhcCCCCCCCcccccccchHHHHH-HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccch
Q psy348 176 AVNSTPLPLPSYLSFISIPSIVFY-LLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHW 254 (293)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~ 254 (293)
..... . ..++..+.. +.+..+++.++...+++.+++.+|.++++...++|+++.++|++++||++++.++
T Consensus 196 ~~~~~-~--------~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~ 266 (293)
T PRK10532 196 LQAGE-A--------LWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQW 266 (293)
T ss_pred HccCc-c--------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHH
Confidence 00111 0 011222322 2333344446666778899999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHh
Q psy348 255 TGTALVFVGTVIFT 268 (293)
Q Consensus 255 iG~~lv~~Gv~~Y~ 268 (293)
+|.++++.|+..++
T Consensus 267 iG~~lIl~~~~~~~ 280 (293)
T PRK10532 267 LALGAIIAASMGST 280 (293)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998876
No 22
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.76 E-value=1.2e-17 Score=150.42 Aligned_cols=211 Identities=14% Similarity=0.124 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCcccccc
Q psy348 19 QIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKY 98 (293)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~~~ 98 (293)
....+........+.+.++++ .|++....+.++.|+++.+++++++|||++++++.|+++++.|+.+....+...
T Consensus 66 ~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~---- 140 (281)
T TIGR03340 66 LAISAVANMVYFLGLAQAYHH-ADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQ---- 140 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccc----
Confidence 334444577788999999999 999999999999999999999999999999999999999999999876443211
Q ss_pred CCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhh---hhh-HHHHHHhhhHHHHHHH
Q psy348 99 GVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTH---LLP-LPAFAFLYKNLYEHWL 174 (293)
Q Consensus 99 ~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~---~~~-~~~~l~~~~~~~~~~~ 174 (293)
.+ ..|+.+.++++++++.|.+..|+..++.+.. .....+.. ... .|..... ...
T Consensus 141 ---------~~------~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~--- 198 (281)
T TIGR03340 141 ---------HR------RKAYAWALAAALGTAIYSLSDKAAALGVPAF-YSALGYLGIGFLAMGWPFLLLY---LKR--- 198 (281)
T ss_pred ---------cc------hhHHHHHHHHHHHHHHhhhhccccccchhcc-cccHHHHHHHHHHHHHHHHHHH---HHH---
Confidence 11 4588889999999999999887654333211 12222221 111 2221110 000
Q ss_pred HHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccch
Q psy348 175 IAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHW 254 (293)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~ 254 (293)
...+.. ......+..+....+.+.+++..++..+++.++...+....+.|+++.++|++++||+++..++
T Consensus 199 --~~~~~~--------~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~ 268 (281)
T TIGR03340 199 --HGRSMF--------PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRL 268 (281)
T ss_pred --hccchh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHH
Confidence 011100 0111233334444444556667788899999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHH
Q psy348 255 TGTALVFVGTVI 266 (293)
Q Consensus 255 iG~~lv~~Gv~~ 266 (293)
+|.++++.|+.+
T Consensus 269 iG~~lil~Gv~l 280 (281)
T TIGR03340 269 MGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHhHHh
Confidence 999999999864
No 23
>KOG3912|consensus
Probab=99.73 E-value=6e-17 Score=140.55 Aligned_cols=239 Identities=17% Similarity=0.254 Sum_probs=175.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI 95 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~ 95 (293)
....+++++|..++..+.|.+|.+ ++++.+||+|....+||.+++..+++++.+.+||++++.+.+|++++...|....
T Consensus 86 p~lfl~Pal~Di~gsslm~vgL~l-TsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~ 164 (372)
T KOG3912|consen 86 PVLFLPPALCDIAGSSLMYVGLNL-TSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLV 164 (372)
T ss_pred cceecChHHHHHhhhHHHHHHHHH-hhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccc
Confidence 556678999999999999999999 9999999999999999999999999999999999999999999999998765432
Q ss_pred cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q psy348 96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLI 175 (293)
Q Consensus 96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~ 175 (293)
+.+ . ++.+ ....|+++++++.+.-|.+.++.|+.+++++..|.+...|..++++..+-.+. .....+
T Consensus 165 ~~p----~--~d~s----~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~-i~m~yi-- 231 (372)
T KOG3912|consen 165 TDP----Y--TDYS----SIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLA-IPMYYI-- 231 (372)
T ss_pred cCC----c--cccc----cchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHH-HHHhhe--
Confidence 211 1 1111 13899999999999999999999999999999898888888777743221100 000000
Q ss_pred HhcCCCCC------CCccc----ccccchHHHHHHHHHHHH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhee
Q psy348 176 AVNSTPLP------LPSYL----SFISIPSIVFYLLGNVLT-QYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVY 244 (293)
Q Consensus 176 ~~~~~~~~------~~~~~----~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~ 244 (293)
....++. +++.. .....|.+...+....++ ++..... .+..+..|+++.++.-.+|..+-++++...
T Consensus 232 -~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaG-lsitk~~SattRmllD~lRt~~IWv~si~m 309 (372)
T KOG3912|consen 232 -PSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAG-LSITKELSATTRMLLDSLRTYVIWVFSIAM 309 (372)
T ss_pred -ecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehh-hHHHHHhhHHHHHHHHhhhhhhhhHhHHHH
Confidence 0000010 00000 000122222222222121 2222222 246899999999999999999999999999
Q ss_pred ecCcccccchhhhhHHHHHHHHHhhh
Q psy348 245 FQNEFTLYHWTGTALVFVGTVIFTQL 270 (293)
Q Consensus 245 fge~lt~~~~iG~~lv~~Gv~~Y~~~ 270 (293)
+.|.+...|+.|.++.+.|+.+|+.+
T Consensus 310 ~~E~f~llqilGFliLi~Gi~lY~~i 335 (372)
T KOG3912|consen 310 GWEYFHLLQILGFLILIMGIILYNQI 335 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999965
No 24
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.68 E-value=3.5e-17 Score=137.72 Aligned_cols=231 Identities=16% Similarity=0.198 Sum_probs=178.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI 95 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~ 95 (293)
.+++++++++...+.+.+.-+|+| .++|.|+++|.++.+.++.....++|.|.+.....+.+++++.-.+..++|.+..
T Consensus 68 aK~WfpiSfLLv~MIyt~SKsLqy-L~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~ 146 (309)
T COG5070 68 AKKWFPISFLLVVMIYTSSKSLQY-LAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQAS 146 (309)
T ss_pred hhhhcCHHHHHHHHHHhcccceee-eeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHH
Confidence 788999999999999999999999 9999999999999999999999999999999999999999999999999987642
Q ss_pred cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q psy348 96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLI 175 (293)
Q Consensus 96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~ 175 (293)
... .+ ....|++++...++..+.+-...++-.+-.+-...+.++|.|+.++|+.+.++ .+.|++..
T Consensus 147 ~~~-------~~------~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s-~~~edws~ 212 (309)
T COG5070 147 AFK-------AQ------ILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFS-FLFEDWSP 212 (309)
T ss_pred HHH-------hc------ccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHH-HHhccCCc
Confidence 210 00 12579999999999999877766654443333346889999999999877654 33343311
Q ss_pred HhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchh
Q psy348 176 AVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWT 255 (293)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~i 255 (293)
-.-...+ .+-.+..++.++++++.--++.-++++.+|+++.+++|.+.+....+.|.++||||.+...+.
T Consensus 213 ~n~annl----------~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~ 282 (309)
T COG5070 213 GNLANNL----------SVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIF 282 (309)
T ss_pred chhhcCC----------ChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHH
Confidence 1000101 112233444555544322223345799999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhc
Q psy348 256 GTALVFVGTVIFTQLV 271 (293)
Q Consensus 256 G~~lv~~Gv~~Y~~~~ 271 (293)
.+.+-+....+|+...
T Consensus 283 sillGflsg~iYavak 298 (309)
T COG5070 283 SILLGFLSGAIYAVAK 298 (309)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988888999763
No 25
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.66 E-value=8.6e-16 Score=125.57 Aligned_cols=147 Identities=21% Similarity=0.311 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH-----cCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCccccccc
Q psy348 118 GITLLTVALFISARMGIYQEVLYKT-----HGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFIS 192 (293)
Q Consensus 118 G~~l~l~s~l~~a~~~v~~~~l~~~-----~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (293)
|+++.+.|+++.|+++++.|+++++ .+.++.++++|.+..+.+..++.. .+.|............-+ ...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~-~~~e~~~~~~~~~~~~~~----~~~ 75 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLA-FLLEGPQLSSFFSEIFGE----ELS 75 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHhhhh----hhc
Confidence 7889999999999999999999998 456788999999988865543321 112221111000000000 001
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHhh
Q psy348 193 -IPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQ 269 (293)
Q Consensus 193 -~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~~ 269 (293)
.+..+..++.+++.+++.+...+.+++++||+++++.+++|.++++++|+++|||++|..+++|+++.+.|+.+|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 76 SDPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 34556667777888888888999999999999999999999999999999999999999999999999999999874
No 26
>KOG2765|consensus
Probab=99.65 E-value=1.5e-15 Score=136.76 Aligned_cols=231 Identities=18% Similarity=0.219 Sum_probs=170.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI 95 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~ 95 (293)
.+.-+..+.+++..+...|.||.| ++++..+++-+++-.||.+++.++..||+++.+.+++++.+.|++++..+|....
T Consensus 159 ak~sl~fc~lWF~anl~~naALa~-TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~ 237 (416)
T KOG2765|consen 159 AKLSLFFCPLWFLANLTSNAALAF-TSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN 237 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence 344455666799999999999999 9999999999999999999999999999999999999999999999998876432
Q ss_pred cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q psy348 96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLI 175 (293)
Q Consensus 96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~ 175 (293)
++ .+ ++. ...|+++.+++++.+|.|.++.|+-..+.+. ...+..+-..+|+.-++++...+. .++.
T Consensus 238 ~~-----~~-a~~------~llG~llaL~sA~~YavY~vllk~~~~~eg~-rvdi~lffGfvGLfnllllwP~l~-iL~~ 303 (416)
T KOG2765|consen 238 SD-----LP-ASR------PLLGNLLALLSALLYAVYTVLLKRKIGDEGE-RVDIQLFFGFVGLFNLLLLWPPLI-ILDF 303 (416)
T ss_pred cc-----CC-ccc------hhHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccHHHHHHHHHHHHHHHHhHHHH-HHHH
Confidence 11 01 111 2899999999999999999999877666641 223333333344332222221111 1111
Q ss_pred HhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchh
Q psy348 176 AVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWT 255 (293)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~i 255 (293)
. ..|.+++|. .......++.++++.++.=+.|-.+.--++|++.++..++.-.++++.-.++=|.++++.+++
T Consensus 304 ~-~~e~F~lP~------~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~ii 376 (416)
T KOG2765|consen 304 F-GEERFELPS------STQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYII 376 (416)
T ss_pred h-ccCcccCCC------CceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHH
Confidence 1 224344331 112222344555666666678888899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHh
Q psy348 256 GTALVFVGTVIFT 268 (293)
Q Consensus 256 G~~lv~~Gv~~Y~ 268 (293)
|...|++|.++-+
T Consensus 377 Gsi~Ifv~Fv~vn 389 (416)
T KOG2765|consen 377 GSIPIFVGFVIVN 389 (416)
T ss_pred HHHHHHHHHhhee
Confidence 9999999987744
No 27
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.65 E-value=3.1e-14 Score=127.29 Aligned_cols=212 Identities=14% Similarity=0.169 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHH-HHhccccChhhhhHHhhhhhhhhheeeccCcccc
Q psy348 18 HQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGI-IILKKVYTLDKYVSVIMITLGIIICTIMSSQEIK 96 (293)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~-l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~ 96 (293)
..+.-.+.......+.+.+++| ++++..+++.++.|+++.++++ +++|||++++++.++++..+|+.++...+....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~- 149 (292)
T COG0697 72 LLLLALLGLALPFLLLFLALKY-TSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG- 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch-
Confidence 3444445577778999999998 9999999999999999999997 777999999999999999999999987764320
Q ss_pred ccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhh-hhhhhhHHHHHHhhhHHHHHHHH
Q psy348 97 KYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALY-YTHLLPLPAFAFLYKNLYEHWLI 175 (293)
Q Consensus 97 ~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~-y~~~~~~~~~l~~~~~~~~~~~~ 175 (293)
+. + ..|+.+.+++.++++++.+..++.. +.+ +..... +... ....+.. . ....
T Consensus 150 ---------~~-~------~~g~~~~l~a~~~~a~~~~~~~~~~-~~~--~~~~~~~~~~~-~~~~~~~-~-~~~~---- 203 (292)
T COG0697 150 ---------IL-S------LLGLLLALAAALLWALYTALVKRLS-RLG--PVTLALLLQLL-LALLLLL-L-FFLS---- 203 (292)
T ss_pred ---------hH-H------HHHHHHHHHHHHHHHHHHHHHHHhc-CCC--hHHHHHHHHHH-HHHHHHH-H-HHhc----
Confidence 10 1 6899999999999999999998877 332 223333 2211 1111110 0 0000
Q ss_pred HhcCCCCCCCcccccccchHHHHH-HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccch
Q psy348 176 AVNSTPLPLPSYLSFISIPSIVFY-LLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHW 254 (293)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~ 254 (293)
..+ . + .....+.. .....+...++...++..+++.++...++...++|+.+.+++++++||+++..++
T Consensus 204 --~~~-~--~------~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~ 272 (292)
T COG0697 204 --GFG-A--P------ILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQL 272 (292)
T ss_pred --ccc-c--c------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 000 0 0 01112222 2222233325667788899999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHh
Q psy348 255 TGTALVFVGTVIFT 268 (293)
Q Consensus 255 iG~~lv~~Gv~~Y~ 268 (293)
+|.++++.|+.+..
T Consensus 273 ~G~~li~~g~~l~~ 286 (292)
T COG0697 273 LGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999997754
No 28
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.59 E-value=3.5e-15 Score=129.88 Aligned_cols=208 Identities=20% Similarity=0.292 Sum_probs=145.1
Q ss_pred chhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCcccc-----------c--cCCCcccccc
Q psy348 41 IAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIK-----------K--YGVSDEEQLS 107 (293)
Q Consensus 41 vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~-----------~--~~~~~~~~~~ 107 (293)
+++|.+..+++..|+++++.++.+.+||++..|+++.++++.|+......|.+... + ...+.....+
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 68999999999999999999999999999999999999999999876655442210 0 0000000001
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcc
Q psy348 108 YSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSY 187 (293)
Q Consensus 108 ~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 187 (293)
. ...|..+.+.++.++++.++++|+..|++ +.++|.+..+++.+........+.....+..... +.+
T Consensus 82 ~------~~~g~~~~l~a~~~~~~~~~y~e~~~k~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~ 148 (222)
T TIGR00803 82 N------PVVGLSAVLSALLSSGFAGVYFEKILKDG-----DTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNF--GFF 148 (222)
T ss_pred c------HHHHHHHHHHHHHHHhhhHHHHHHcccCC-----CCchHHHHHHHHHHHHHHHHHHHhhcccchhhcc--Ccc
Confidence 1 26788889999999999999999986654 3458887777766544321111111000000000 000
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHH
Q psy348 188 LSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIF 267 (293)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y 267 (293)
....+..|..++.+++.+ .++.+.+++.|+.+.+++++++++++.++|+++|||+++..+++|..+++.|+.+|
T Consensus 149 --~~~~~~~~~~~~~~a~~~----~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 149 --IGYPTAVWIVGLLNVGGG----LCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred --cCCchHHHHHHHHHHhcC----ceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 001223444455544444 24556899999999999999999999999999999999999999999999998765
No 29
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.50 E-value=5.9e-13 Score=118.18 Aligned_cols=184 Identities=13% Similarity=0.029 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccccc
Q psy348 18 HQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKK 97 (293)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~~ 97 (293)
.+...+++...+..+.+++++| ++++..+++.++.|+++++++++++|||+++++++++++.++|+++...++ .
T Consensus 72 ~~~~~g~~~~~~~~~~~~a~~~-~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~-~---- 145 (256)
T TIGR00688 72 SLLLCGLLIGFNWWLFIWAVNN-GSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK-G---- 145 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc-C----
Confidence 3455666677889999999999 999999999999999999999999999999999999999999998865321 1
Q ss_pred cCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHh
Q psy348 98 YGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAV 177 (293)
Q Consensus 98 ~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~ 177 (293)
+ . . .+.+++++++|.|.+..|+..++ + ..+...+ .....|...... +...
T Consensus 146 --------~-~-------~---~~~l~aa~~~a~~~i~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~--~~~~----- 195 (256)
T TIGR00688 146 --------S-L-------P---WEALVLAFSFTAYGLIRKALKNT-D--LAGFCLE-TLSLMPVAIYYL--LQTD----- 195 (256)
T ss_pred --------C-c-------h---HHHHHHHHHHHHHHHHHhhcCCC-C--cchHHHH-HHHHHHHHHHHH--HHhc-----
Confidence 0 0 1 24677899999999999876432 1 2222221 222222221100 0000
Q ss_pred cCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhee
Q psy348 178 NSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVY 244 (293)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~ 244 (293)
..+... ......|..++..++.+.++..++...+++.+|.+.++..+++|+++.+++++.
T Consensus 196 ~~~~~~-------~~~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 196 FATVQQ-------TNPFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred cCcccc-------cCchhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 000000 011113444333333344677788889999999999999999999999998653
No 30
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.47 E-value=4.7e-12 Score=114.61 Aligned_cols=211 Identities=12% Similarity=0.147 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHhhhhhhcccchhhHHHHHhh-chhHHHHHHHHHHhccccChhh----hhHHhhhhhhhhheeeccCc
Q psy348 19 QIELVVMFFITNVCNNYAFDFNIAMPLHMIFRA-GSLITNMIMGIIILKKVYTLDK----YVSVIMITLGIIICTIMSSQ 93 (293)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~-~~pi~t~l~~~l~l~~~~~~~~----~~~i~l~~~Gv~i~~~~~~~ 93 (293)
-+.-++++..++.+.+.+.++ +.++....+-+ +.++++.+.+.+++||+.++++ +++++++++|+.++...+.+
T Consensus 62 g~l~G~~w~ig~~~~~~ai~~-~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~ 140 (290)
T TIGR00776 62 GLLSGAFWALGQINQFKSMRY-MGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDK 140 (290)
T ss_pred HHHHHHHHHhhhhhHHHHHHH-HhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccc
Confidence 344455588889999999998 99999977777 7888999999999999999999 99999999999998766432
Q ss_pred cccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhh---hhhhHHHHHHhhhHHH
Q psy348 94 EIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYT---HLLPLPAFAFLYKNLY 170 (293)
Q Consensus 94 ~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~---~~~~~~~~l~~~~~~~ 170 (293)
..+ ++ +..+ ...|+++.++|.++++.|.+..|.. ++ +|.+..+.. ...+...+....
T Consensus 141 ~~~------~~-~~~~-----~~~Gi~~~l~sg~~y~~~~~~~~~~--~~--~~~~~~~~~~~g~~~~~~~~~~~~---- 200 (290)
T TIGR00776 141 SAG------IK-SEFN-----FKKGILLLLMSTIGYLVYVVVAKAF--GV--DGLSVLLPQAIGMVIGGIIFNLGH---- 200 (290)
T ss_pred ccc------cc-cccc-----hhhHHHHHHHHHHHHHHHHHHHHHc--CC--CcceehhHHHHHHHHHHHHHHHHH----
Confidence 110 00 0011 1469999999999999999999865 23 344442222 111211111110
Q ss_pred HHHHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHhhhheeecCcc
Q psy348 171 EHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTT-ECNSLTVTLVITLRKFVSLLFSIVYFQNEF 249 (293)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~-~~sa~~~sv~~~l~~v~t~ils~~~fge~l 249 (293)
. ...+ + .....+..++...+ ..+++..++...+ +.++.+.++...++|+.+.+.+++++||+.
T Consensus 201 ---~--~~~~-~---------~~~~~~~~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~ 264 (290)
T TIGR00776 201 ---I--LAKP-L---------KKYAILLNILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKK 264 (290)
T ss_pred ---h--cccc-h---------HHHHHHHHHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCC
Confidence 0 0111 1 11223333333333 3466666666778 999999999999999999999999999999
Q ss_pred cccch----hhhhHHHHHHHH
Q psy348 250 TLYHW----TGTALVFVGTVI 266 (293)
Q Consensus 250 t~~~~----iG~~lv~~Gv~~ 266 (293)
+..++ +|.++++.|+.+
T Consensus 265 ~~~~~~~~~iG~~lIi~~~~l 285 (290)
T TIGR00776 265 TKREMIAISVGIILIIIAANI 285 (290)
T ss_pred CcceeehhHHHHHHHHHHHHH
Confidence 99999 999999999976
No 31
>KOG2766|consensus
Probab=99.39 E-value=2.5e-14 Score=122.83 Aligned_cols=221 Identities=18% Similarity=0.208 Sum_probs=163.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI 95 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~ 95 (293)
|++|+++++...-+|.+-..|.+| ++....+++.+-..+.+++++|+|+|.|+++.++.|+++++.|++++...|...+
T Consensus 78 ~~hYilla~~DVEaNy~vV~AyQy-TsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ag 156 (336)
T KOG2766|consen 78 WRHYILLAFVDVEANYFVVKAYQY-TSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAG 156 (336)
T ss_pred HHHhhheeEEeecccEEEeeehhh-cchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccc
Confidence 889999999998889899999999 8999999999999999999999999999999999999999999999998886543
Q ss_pred cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q psy348 96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLI 175 (293)
Q Consensus 96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~ 175 (293)
+..+ .+.+ ..|+.+++..+-++|..++.+|.+.|+.+ ..|.+....+++..+ +.++.
T Consensus 157 d~ag------gsnp------~~GD~lvi~GATlYaVSNv~EEflvkn~d--~~elm~~lgLfGaII---------saIQ~ 213 (336)
T KOG2766|consen 157 DRAG------GSNP------VKGDFLVIAGATLYAVSNVSEEFLVKNAD--RVELMGFLGLFGAII---------SAIQF 213 (336)
T ss_pred cccC------CCCC------ccCcEEEEecceeeeeccccHHHHHhcCc--HHHHHHHHHHHHHHH---------HHHHH
Confidence 2211 1112 78999999999999999999999988654 457776666655432 22222
Q ss_pred HhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchh
Q psy348 176 AVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWT 255 (293)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~i 255 (293)
+.+.. +...+ .|. ..+..++. ..++-++.....=..++..|++..++.......-++++ -.||-++++...+
T Consensus 214 i~~~~--~~~tl--~w~-~~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~l 285 (336)
T KOG2766|consen 214 IFERH--HVSTL--HWD-SAIFLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFL 285 (336)
T ss_pred hhhcc--ceeeE--eeh-HHHHHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHH
Confidence 22211 11111 011 12222222 23333222222223578999999999998888888877 7888889999999
Q ss_pred hhhHHHHHHHHHh
Q psy348 256 GTALVFVGTVIFT 268 (293)
Q Consensus 256 G~~lv~~Gv~~Y~ 268 (293)
..+.+..|..+|+
T Consensus 286 aF~~i~~GliiYs 298 (336)
T KOG2766|consen 286 AFATIATGLIIYS 298 (336)
T ss_pred HHHHHHHhhEEee
Confidence 9999999999984
No 32
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.39 E-value=2.2e-11 Score=107.13 Aligned_cols=207 Identities=14% Similarity=0.131 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccccccC
Q psy348 20 IELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYG 99 (293)
Q Consensus 20 ~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~~~~ 99 (293)
...+.+...+-....++.+- =.+=..++-....|++.++++.+++|||+++.|+++++++.+||..-.+...+
T Consensus 76 ~l~a~li~~nW~lfiWAvn~-g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~------ 148 (293)
T COG2962 76 ALTALLIGLNWWLFIWAVNN-GHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS------ 148 (293)
T ss_pred HHHHHHHHHHHHHhheecCC-CchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC------
Confidence 33333333333334444442 23344566667899999999999999999999999999999999998776432
Q ss_pred CCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcC
Q psy348 100 VSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNS 179 (293)
Q Consensus 100 ~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~ 179 (293)
++ .....++ +.+++|....|++ +.++.+-++.-.+.-.|..+...-.+ + .+
T Consensus 149 --------lp------wval~la----~sf~~Ygl~RK~~----~v~a~~g~~lE~l~l~p~al~yl~~l-~------~~ 199 (293)
T COG2962 149 --------LP------WVALALA----LSFGLYGLLRKKL----KVDALTGLTLETLLLLPVALIYLLFL-A------DS 199 (293)
T ss_pred --------Cc------HHHHHHH----HHHHHHHHHHHhc----CCchHHhHHHHHHHHhHHHHHHHHHH-h------cC
Confidence 23 2333333 5778888666543 44444444444443344332211010 0 11
Q ss_pred CCCCCCcccccccchHHHHHHHHHH-HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhh
Q psy348 180 TPLPLPSYLSFISIPSIVFYLLGNV-LTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTA 258 (293)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~ 258 (293)
+.+ . ..+.+..+..+.+.+ +++ +.....-..-++.+=.+..+.+.++|....++++++|||+++.-+.+..+
T Consensus 200 ~~~----~--~~~~~~~~~LLv~aG~vTa-vpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~ 272 (293)
T COG2962 200 GQF----L--QQNANSLWLLLVLAGLVTA-VPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFA 272 (293)
T ss_pred chh----h--hcCCchHHHHHHHhhHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 100 0 001223444444333 333 33344445689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy348 259 LVFVGTVIFTQ 269 (293)
Q Consensus 259 lv~~Gv~~Y~~ 269 (293)
++-.|+.+|+.
T Consensus 273 ~IW~aL~l~~~ 283 (293)
T COG2962 273 FIWLALALFSI 283 (293)
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 33
>KOG4510|consensus
Probab=99.35 E-value=6.7e-13 Score=114.89 Aligned_cols=219 Identities=14% Similarity=0.158 Sum_probs=149.6
Q ss_pred HHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccccccCCCc
Q psy348 23 VVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYGVSD 102 (293)
Q Consensus 23 ~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~~~~~~~ 102 (293)
+++-+.+..+.+++++| .|.+-+.++..++|++|.+++|.++||+++....++.++.+.|+++....+.-.++....++
T Consensus 104 g~mG~tgvmlmyya~~~-mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~ 182 (346)
T KOG4510|consen 104 GFMGFTGVMLMYYALMY-MSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGED 182 (346)
T ss_pred hhhhhhHHHHHHHHHhh-cchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccc
Confidence 44455567889999999 99999999999999999999999999999999999999999999998765432221110000
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCC
Q psy348 103 EEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPL 182 (293)
Q Consensus 103 ~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 182 (293)
..+-+. ...|....+.+++..|-.-++.+.+-|+. +..-.+.|-.++++..-++.... + +.+
T Consensus 183 ~s~~~~------~~~gt~aai~s~lf~asvyIilR~iGk~~--h~~msvsyf~~i~lV~s~I~~~~----i------g~~ 244 (346)
T KOG4510|consen 183 SSQVEY------DIPGTVAAISSVLFGASVYIILRYIGKNA--HAIMSVSYFSLITLVVSLIGCAS----I------GAV 244 (346)
T ss_pred cccccc------cCCchHHHHHhHhhhhhHHHHHHHhhccc--cEEEEehHHHHHHHHHHHHHHhh----c------cce
Confidence 000011 15677778888877777666666654433 23344555555543322111101 0 112
Q ss_pred CCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHH
Q psy348 183 PLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFV 262 (293)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~ 262 (293)
++|. -...|.++...++++++++...=..+++=-|...++..+..-+++.+.-+++|||-.|.+.|.|+++++.
T Consensus 245 ~lP~------cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvs 318 (346)
T KOG4510|consen 245 QLPH------CGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVS 318 (346)
T ss_pred ecCc------cccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeeh
Confidence 2221 0111222222245566777766667888778888899999999999999999999999999999999999
Q ss_pred HHHH
Q psy348 263 GTVI 266 (293)
Q Consensus 263 Gv~~ 266 (293)
..++
T Consensus 319 S~v~ 322 (346)
T KOG4510|consen 319 STVW 322 (346)
T ss_pred hHHH
Confidence 9877
No 34
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.27 E-value=3.2e-10 Score=97.73 Aligned_cols=208 Identities=14% Similarity=0.087 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI 95 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~ 95 (293)
++.....+.....+|.+.+.+++. +|.+....+-.+.|+.+.+++ .||..-. +-+.+.+.|+.+..-...+.
T Consensus 71 ~~~~~~yGvsLg~MNl~FY~si~r-iPlGiAVAiEF~GPL~vA~~~----sRr~~d~--vwvaLAvlGi~lL~p~~~~~- 142 (292)
T COG5006 71 RLALLAYGVSLGGMNLLFYLSIER-IPLGIAVAIEFTGPLAVALLS----SRRLRDF--VWVALAVLGIWLLLPLGQSV- 142 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhhhhccHHHHHHHh----ccchhhH--HHHHHHHHHHHhheeccCCc-
Confidence 778888899999999999999997 999999999999999876654 4544444 44556677877766443221
Q ss_pred cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q psy348 96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLI 175 (293)
Q Consensus 96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~ 175 (293)
.+.+ ..|..+.+.+..||+.|-+..++.-+.. +...-+.+...++..+++++ |.
T Consensus 143 ----------~~lD------p~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~g~~g~a~gm~vAaviv~Pi-g~------- 196 (292)
T COG5006 143 ----------WSLD------PVGVALALGAGACWALYIVLGQRAGRAE--HGTAGVAVGMLVAALIVLPI-GA------- 196 (292)
T ss_pred ----------CcCC------HHHHHHHHHHhHHHHHHHHHcchhcccC--CCchHHHHHHHHHHHHHhhh-hh-------
Confidence 1122 7899999999999999999998775311 11122333333333333332 11
Q ss_pred HhcCCCCCCCcccccccchHHHHH-HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccch
Q psy348 176 AVNSTPLPLPSYLSFISIPSIVFY-LLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHW 254 (293)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~ 254 (293)
...++. ...|.+... +....+++.+.+......++|.++-+.++..+++|.+..+.|++++||.+|+.||
T Consensus 197 ~~ag~~---------l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qw 267 (292)
T COG5006 197 AQAGPA---------LFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQW 267 (292)
T ss_pred hhcchh---------hcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHH
Confidence 011121 124454443 3344455667767777789999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHH
Q psy348 255 TGTALVFVGTVI 266 (293)
Q Consensus 255 iG~~lv~~Gv~~ 266 (293)
+|++.|+.+..-
T Consensus 268 laI~~ViaAsaG 279 (292)
T COG5006 268 LAIAAVIAASAG 279 (292)
T ss_pred HHHHHHHHHHhc
Confidence 999999998754
No 35
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.81 E-value=9e-08 Score=86.95 Aligned_cols=227 Identities=18% Similarity=0.217 Sum_probs=124.7
Q ss_pred HHHHHHH-HHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCcccc
Q psy348 18 HQIELVV-MFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIK 96 (293)
Q Consensus 18 ~~~~~~~-~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~ 96 (293)
+.+..++ ++..+.++++.++.+ .|.+..+-+.+...++..+++..++|||++++.+.|++++++|.+++......+..
T Consensus 51 ~~W~~G~~~~~~g~~~~~~Al~~-ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~ 129 (300)
T PF05653_consen 51 PLWWIGLLLMVLGEILNFVALGF-APASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEP 129 (300)
T ss_pred HHHHHHHHHHhcchHHHHHHHHh-hhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCC
Confidence 3344444 367788999999999 89999999999999999999999999999999999999999999987765533211
Q ss_pred ccCCCcccc--ccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHH-HHHhh-hHHHHH
Q psy348 97 KYGVSDEEQ--LSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPA-FAFLY-KNLYEH 172 (293)
Q Consensus 97 ~~~~~~~~~--~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~-~l~~~-~~~~~~ 172 (293)
.. ..+| +...++ ....+.......+ .+..-...++++.. .++.|...+++.. +.... -.+-..
T Consensus 130 ~~---t~~~l~~~~~~~---~fl~y~~~~~~~~-----~~L~~~~~~r~g~~--~i~vyi~i~sl~Gs~tvl~~K~i~~~ 196 (300)
T PF05653_consen 130 IH---TLDELIALLSQP---GFLVYFILVLVLI-----LILIFFIKPRYGRR--NILVYISICSLIGSFTVLSAKAISIL 196 (300)
T ss_pred cC---CHHHHHHHhcCc---ceehhHHHHHHHH-----HHHHHhhcchhccc--ceEEEEEEeccccchhhhHHHHHHHH
Confidence 00 0000 000000 0111222211111 11222222333321 2344554444211 11111 111111
Q ss_pred HHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHhhhheeecC--cc
Q psy348 173 WLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVT-LVITLRKFVSLLFSIVYFQN--EF 249 (293)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~s-v~~~l~~v~t~ils~~~fge--~l 249 (293)
+.....+++ .+..|..|..++....+...-..+...++++.++.... +.-..-...+++-|.++|+| +.
T Consensus 197 i~~~~~g~~--------~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~ 268 (300)
T PF05653_consen 197 IKLTFSGDN--------QFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRM 268 (300)
T ss_pred HHHHhcCch--------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccc
Confidence 111111111 02234445444433333333334445578888776533 23333446788889999998 66
Q ss_pred cccc----hhhhhHHHHHHHH
Q psy348 250 TLYH----WTGTALVFVGTVI 266 (293)
Q Consensus 250 t~~~----~iG~~lv~~Gv~~ 266 (293)
++.+ ..|..+++.|+++
T Consensus 269 ~~~~~~~~~~G~~~ii~GV~l 289 (300)
T PF05653_consen 269 TAWQIIGFLCGFLIIIIGVFL 289 (300)
T ss_pred cHHHHHHHHHHHHHHHHhhhe
Confidence 6644 4567778888855
No 36
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.72 E-value=1.4e-08 Score=78.91 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHH-HHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCc
Q psy348 16 NQHQIELVVMFF-ITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQ 93 (293)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~ 93 (293)
+......+.+.. .+..+.+++++| .+ +....+.++.|+++++++++++|||++++++.+++++++|+++...+|.+
T Consensus 34 ~~~~~~~g~~~~~~~~~~~~~a~~~-~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 34 WLWLILAGLLGFGVAYLLFFYALSY-AP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-Cc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 444445455544 788999999999 88 57789999999999999999999999999999999999999999988754
No 37
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.62 E-value=9.1e-08 Score=74.51 Aligned_cols=124 Identities=15% Similarity=0.231 Sum_probs=85.7
Q ss_pred HHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHHHHHHHHHHHH
Q psy348 127 FISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLT 206 (293)
Q Consensus 127 l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (293)
++||.+.+..|+..++. ++.+..++....+.+ .++.. ...+..+ .... ........+....+.
T Consensus 1 ~~~a~~~~~~k~~~~~~--~~~~~~~~~~~~~~~-~~~~~-~~~~~~~----~~~~---------~~~~~~~~~~~~~~~ 63 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI--SPLSITFWRFLIAGI-LLILL-LILGRKP----FKNL---------SPRQWLWLLFLGLLG 63 (126)
T ss_pred ceeeeHHHHHHHHhccC--CHHHHHHHHHHHHHH-HHHHH-Hhhcccc----ccCC---------ChhhhhhhhHhhccc
Confidence 36788999999888874 466777777766654 22211 1111100 0111 111122223333333
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHH
Q psy348 207 QYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIF 267 (293)
Q Consensus 207 ~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y 267 (293)
..+++..++.++++.++...++...+.|+++.++++++++|+++..+++|.++++.|+++.
T Consensus 64 ~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 64 TALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred eehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3466677788999999999999999999999999999999999999999999999999764
No 38
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.54 E-value=5.3e-06 Score=73.65 Aligned_cols=214 Identities=13% Similarity=0.121 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccchhhHHH-HHhhchhHHHHHHHHHHhccccChhhhh----HHhhhhhhhhheeecc
Q psy348 17 QHQIELVVMFFITNVCNNYAFDFNIAMPLHM-IFRAGSLITNMIMGIIILKKVYTLDKYV----SVIMITLGIIICTIMS 91 (293)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~-~~~~~~pi~t~l~~~l~l~~~~~~~~~~----~i~l~~~Gv~i~~~~~ 91 (293)
.--+.-++++..+..+.+.++++ +.+|... +-.....+.+.++++++++|-.+..++. +++++++|+.+.+..|
T Consensus 46 ~~~~lsG~~W~iGq~~qf~s~~~-~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~ 124 (269)
T PF06800_consen 46 IVAFLSGAFWAIGQIGQFKSFKK-IGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD 124 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 34456666799999999999998 8877764 4456678889999999999988877765 8899999999999888
Q ss_pred CccccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHH
Q psy348 92 SQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYE 171 (293)
Q Consensus 92 ~~~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 171 (293)
..+... + ++. ...-|+...+++.+.+..|.+..+. .+.+++...+ -..+++.+.. .++.
T Consensus 125 ~~~~~~------~-~~~-----~~~kgi~~Ll~stigy~~Y~~~~~~----~~~~~~~~~l-PqaiGm~i~a----~i~~ 183 (269)
T PF06800_consen 125 KKSDKS------S-SKS-----NMKKGILALLISTIGYWIYSVIPKA----FHVSGWSAFL-PQAIGMLIGA----FIFN 183 (269)
T ss_pred cccccc------c-ccc-----chhhHHHHHHHHHHHHHHHHHHHHh----cCCChhHhHH-HHHHHHHHHH----HHHh
Confidence 654210 0 000 1257999999999999999888643 2334444332 2223322111 1111
Q ss_pred HHHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccc
Q psy348 172 HWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTL 251 (293)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~ 251 (293)
... ..+.. ....|.-++...+.+ +++...+.+.++.+..+.=..+-+..+++.+.|.++++|+=+.
T Consensus 184 ~~~---~~~~~----------~k~~~~nil~G~~w~-ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ 249 (269)
T PF06800_consen 184 LFS---KKPFF----------EKKSWKNILTGLIWG-IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTK 249 (269)
T ss_pred hcc---ccccc----------ccchHHhhHHHHHHH-HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCch
Confidence 110 11111 112233344443434 6666777789999999988888899999999999999997665
Q ss_pred c----chhhhhHHHHHHHH
Q psy348 252 Y----HWTGTALVFVGTVI 266 (293)
Q Consensus 252 ~----~~iG~~lv~~Gv~~ 266 (293)
. .++|.++++.|.++
T Consensus 250 ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 250 KEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hhHHHHHHHHHHHHHhhhc
Confidence 4 56788888888643
No 39
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.49 E-value=2.8e-06 Score=77.09 Aligned_cols=138 Identities=15% Similarity=0.230 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchH
Q psy348 116 SLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPS 195 (293)
Q Consensus 116 ~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (293)
..|+++.+++.++++...+..|.. . +.+|.++.++..+++.+..+++.. .......... . ...+.
T Consensus 7 ~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~-~~~~~~~~~~-~----------~~~~~ 71 (296)
T PRK15430 7 RQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMS-ICRQWSYLKT-L----------IQTPQ 71 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHH-HHccHHHHHH-H----------HcCHH
Confidence 679999999999999999999653 3 345788899988877654332210 1010000000 0 00111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348 196 IVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT 268 (293)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~ 268 (293)
.+.......+....+....++.++++++..+++...+.|+++.++++++++|+++..+++|+++.+.|+.+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 72 KIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 2222223233233455677889999999999999999999999999999999999999999999999998743
No 40
>KOG4314|consensus
Probab=98.47 E-value=3.6e-07 Score=76.38 Aligned_cols=207 Identities=14% Similarity=0.124 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccccccC
Q psy348 20 IELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYG 99 (293)
Q Consensus 20 ~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~~~~ 99 (293)
.+.++++.+.++....+|+- ++++-.+-+-+|.-.++.+++++.+|.|+.-.++++.++.+.|+++....|....
T Consensus 57 aPF~i~Wt~aNY~Yl~AL~~-is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a---- 131 (290)
T KOG4314|consen 57 APFSIFWTGANYLYLLALKK-ISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHA---- 131 (290)
T ss_pred cceEEEEecCCcHHHHHHHh-cChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhh----
Confidence 45666788889999999997 9999999999999999999999999999999999999999999999998775421
Q ss_pred CCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhH--------HHH-HHhhhHHH
Q psy348 100 VSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPL--------PAF-AFLYKNLY 170 (293)
Q Consensus 100 ~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~--------~~~-l~~~~~~~ 170 (293)
+ ...|+.+.+.|+...|+|-|..|......+-. +.-.+++..+. |.. +.+.+ .
T Consensus 132 ------~--------e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~G--daa~FmS~LGF~NL~~~~~~~lIL~~T~--V 193 (290)
T KOG4314|consen 132 ------D--------EIIGIACAVGSAFMAALYKVLFKMFIGNANFG--DAAHFMSCLGFFNLCFISFPALILAFTG--V 193 (290)
T ss_pred ------h--------hhhhHHHHHHHHHHHHHHHHHHHHHhccCcch--hHHHHHHHHHHHHHHHHhhhHHHHHHhc--h
Confidence 1 27899999999999999999998776543321 22223333332 221 11111 2
Q ss_pred HHHHHHhcCCCCCCCcccccccchHHHHHHH-HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcc
Q psy348 171 EHWLIAVNSTPLPLPSYLSFISIPSIVFYLL-GNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEF 249 (293)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~l 249 (293)
|++......| |..+. ..+++- --+..+...+..+.|...|+-..+.-......-.++-+-..
T Consensus 194 E~~qsFA~~P----------------WG~l~G~A~L~l-AFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ 256 (290)
T KOG4314|consen 194 EHLQSFAAAP----------------WGCLCGAAGLSL-AFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEF 256 (290)
T ss_pred HHHHHHhhCC----------------chhhhhHHHHHH-HHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHH
Confidence 3443221111 11111 111111 11223334577788888888777766666666666666689
Q ss_pred cccchhhhhHHHHHHHH
Q psy348 250 TLYHWTGTALVFVGTVI 266 (293)
Q Consensus 250 t~~~~iG~~lv~~Gv~~ 266 (293)
+....+|.+++..|..+
T Consensus 257 ntl~La~T~iI~i~FiL 273 (290)
T KOG4314|consen 257 NTLFLAATCIICIGFIL 273 (290)
T ss_pred HHHHHHHHHHHHHhHHh
Confidence 99999999999999765
No 41
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.46 E-value=2.9e-07 Score=71.64 Aligned_cols=129 Identities=14% Similarity=0.165 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHH---HHHhhhHHHHHHHHHhcCCCCCCCcccccccchH
Q psy348 119 ITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPA---FAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPS 195 (293)
Q Consensus 119 ~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (293)
.++.++|++++++..++.|.-.+..|+ ....+-.+...+.. .+...|. ++.+ .-..+.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp--~~At~IRtiVi~~~l~~v~~~~g~-------------~~~~----~~~~~k 65 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVDP--DFATTIRTIVILIFLLIVLLVTGN-------------WQAG----GEIGPK 65 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCc--cHHHHHHHHHHHHHHHHHHHhcCc-------------eecc----cccCcc
Confidence 467889999999999999877765543 33333333322211 1111111 1111 012455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 196 IVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
.|.++..+++.+-++..+.|+.++.-.+..........++++.++|++++||+++..+|+|..++.+|+.+
T Consensus 66 ~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gail 136 (140)
T COG2510 66 SWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAIL 136 (140)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeee
Confidence 67777777776667777888999999999999999999999999999999999999999999999999865
No 42
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.38 E-value=4.7e-06 Score=73.85 Aligned_cols=134 Identities=15% Similarity=0.187 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHh---hhHHHHHHHHHhcCCCCCCCcccccccch
Q psy348 118 GITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFL---YKNLYEHWLIAVNSTPLPLPSYLSFISIP 194 (293)
Q Consensus 118 G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (293)
|.++.++++++++...+..|.+ . +.+|.++.++-.+++.+.+++. .+.......... . . ...
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~~-~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~--~-~---------~~~ 67 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKLL-K--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLK--R-I---------QKR 67 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-c--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHh--C-c---------ccc
Confidence 8899999999999999999863 3 3567889999888776543321 111000000000 0 0 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 195 SIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
..+......++...++....++.++++++..+++...+.|+++.++++++++|+++..+++|.++.+.|+.+
T Consensus 68 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~l 139 (256)
T TIGR00688 68 PLILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVIS 139 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 112222222222335556777889999999999999999999999999999999999999999999999876
No 43
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.36 E-value=1.2e-05 Score=63.91 Aligned_cols=117 Identities=10% Similarity=0.084 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHH
Q psy348 117 LGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSI 196 (293)
Q Consensus 117 ~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (293)
.|+++++.++++.+...+..|+-.++.+.. +.... ....... . .+|..
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~--~~~~~----~~~~~~~------------~--------------~~p~~ 49 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLL--SHAWD----FIAALLA------------F--------------GLALR 49 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCc--cchhH----HHHHHHH------------H--------------hccHH
Confidence 488999999999999888888777766531 11000 0000000 0 01211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhe--eecCcccccchhhhhHHHHHHHHH
Q psy348 197 VFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIV--YFQNEFTLYHWTGTALVFVGTVIF 267 (293)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~--~fge~lt~~~~iG~~lv~~Gv~~Y 267 (293)
+ +....++..++...|.+++++.+...+.....+..+...+.++. +|||++|+.+++|+++++.|+++-
T Consensus 50 ~--i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv 120 (129)
T PRK02971 50 A--VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLI 120 (129)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 1 11212222244457778999999999999988888888888885 899999999999999999999773
No 44
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.32 E-value=9e-07 Score=68.80 Aligned_cols=71 Identities=17% Similarity=0.294 Sum_probs=64.3
Q ss_pred hHHHHHHHHH-HHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhhe
Q psy348 16 NQHQIELVVM-FFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIIC 87 (293)
Q Consensus 16 ~~~~~~~~~~-~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~ 87 (293)
+...+..+.+ ...+..+.+.++++ ++++..+++.++.|+++.+++++++||+++++++.++++++.|+.+.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 53 WLWLLFLGLLGTALAYLLYFYALKY-ISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred hhhhhHhhccceehHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5555666666 58889999999998 99999999999999999999999999999999999999999999875
No 45
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.20 E-value=1.7e-05 Score=71.30 Aligned_cols=130 Identities=8% Similarity=0.136 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHHHH
Q psy348 119 ITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVF 198 (293)
Q Consensus 119 ~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (293)
.++.+++++++|...+..|+..++.. +...+....+....+++. ... .....+.. .....+.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~----~~~~~~~~~~~~~l~~~~--~~~-----~~~~~~~~-------~~~~~~~ 64 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP----DFLWWALLAHSVLLTPYG--LWY-----LAQVGWSR-------LPATFWL 64 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh----HHHHHHHHHHHHHHHHHH--HHh-----cccCCCCC-------cchhhHH
Confidence 46788899999999999986654421 233444433332222211 000 00111110 0112333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 199 YLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
.++..++....+..+.+...++.++...++.....|+++.++++++++|+++..+++|+++++.|+.+
T Consensus 65 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~l 132 (281)
T TIGR03340 65 LLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLV 132 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 44444444445556677789999999999999999999999999999999999999999999999976
No 46
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.14 E-value=9.5e-06 Score=62.86 Aligned_cols=64 Identities=9% Similarity=0.094 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhhee
Q psy348 24 VMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICT 88 (293)
Q Consensus 24 ~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~ 88 (293)
.+|..+..+...+++. +|.+....+-++.++.+++++++++|||++.+|++|+.++++|+++..
T Consensus 45 ~~~~l~~~~~~~al~~-iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQN-VPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhh-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4578889999999997 999999888889999999999999999999999999999999998765
No 47
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.05 E-value=9.7e-05 Score=68.89 Aligned_cols=135 Identities=15% Similarity=0.141 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHH
Q psy348 117 LGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSI 196 (293)
Q Consensus 117 ~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (293)
.-++.+++..++++.+.+..|..+ +.+.++....+|-..++...++++. ...+. .... | ......
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~-~~G~~~~~~~~~R~~iA~l~Ll~~~-~~~~~----~~~~----~-----~~~~~~ 77 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVAT-SKGLNIYPFLGYSYLLASLLLLPSL-FFTNR----SRSL----P-----PLSVSI 77 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HCCCCccHHHHHHHHHHHHHHHHHH-HHHHH----hccc----C-----cchHHH
Confidence 345666667888888888887777 5577788888888777644333221 00010 0000 0 001123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhee------ecCcccccchhhhhHHHHHHHH
Q psy348 197 VFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVY------FQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~------fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
+..+.+.++.+.+.+...+..+++++|..+++..++.|+++.++++++ ++|+++..+++|+++.+.|+.+
T Consensus 78 ~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~l 153 (358)
T PLN00411 78 LSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALV 153 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHH
Confidence 333333333333444566778999999999999999999999999999 7999999999999999999976
No 48
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.77 E-value=0.00013 Score=56.51 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=51.0
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHH
Q psy348 212 SSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIF 267 (293)
Q Consensus 212 ~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y 267 (293)
..+...+++.+...+-....+.++.+.++|+++|||++++.+++|+++++.|+..-
T Consensus 52 ~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 52 VLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 45556899999999988888999999999999999999999999999999999763
No 49
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.71 E-value=0.00053 Score=53.02 Aligned_cols=59 Identities=15% Similarity=0.453 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348 209 LCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT 268 (293)
Q Consensus 209 l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~ 268 (293)
..+..+++..++.++ ..++...+.|+++.++|+++|+|+++..+++|+++++.|+.+-.
T Consensus 47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~ 105 (113)
T PF13536_consen 47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIA 105 (113)
T ss_pred HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 344566678899985 77799999999999999999999999999999999999997744
No 50
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.68 E-value=4.2e-05 Score=59.76 Aligned_cols=72 Identities=13% Similarity=0.168 Sum_probs=61.0
Q ss_pred HHHHHHHH-HHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheee
Q psy348 17 QHQIELVV-MFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTI 89 (293)
Q Consensus 17 ~~~~~~~~-~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~ 89 (293)
+.++.++. .-..+-.+.+.+++- =++|...=+..++|+++++++++++|||++..+|+|++++++|+++++.
T Consensus 67 ~lflilSGla~glswl~Yf~ALk~-G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 67 WLFLILSGLAGGLSWLLYFRALKK-GKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHhc-CCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 34444444 355667889999996 6899888899999999999999999999999999999999999988764
No 51
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.67 E-value=0.00033 Score=61.86 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348 201 LGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT 268 (293)
Q Consensus 201 ~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~ 268 (293)
....+...+++...+.+++++++...++...+.|+++.+++.++++|+++..+++|+++.+.|+.+..
T Consensus 51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~ 118 (260)
T TIGR00950 51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL 118 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc
Confidence 33334444666677889999999999999999999999999999999999999999999999997743
No 52
>KOG2922|consensus
Probab=97.65 E-value=0.00094 Score=60.17 Aligned_cols=220 Identities=16% Similarity=0.178 Sum_probs=123.0
Q ss_pred HHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccccccCCCccc
Q psy348 25 MFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYGVSDEE 104 (293)
Q Consensus 25 ~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~~~~~~~~~ 104 (293)
.+..+-++++.|..| .|.+..+-+.+++.+...+++..+++||.+..-.+||+++++|-.+...+.+.+... ....
T Consensus 73 tm~vGei~NFaAYaF-APasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i---~t~~ 148 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAF-APASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI---ESVE 148 (335)
T ss_pred HHHHHhHhhHHHHhh-chHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc---ccHH
Confidence 477889999999999 899999999999999999999999999999999999999999999988776543110 0000
Q ss_pred c--ccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHH-HHHhh-hHHHHHHHHHhcCC
Q psy348 105 Q--LSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPA-FAFLY-KNLYEHWLIAVNST 180 (293)
Q Consensus 105 ~--~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~-~l~~~-~~~~~~~~~~~~~~ 180 (293)
+ +-..++. .+.+...++-.++ +..-...++++. ..++.|..+++... +...+ -.+-..+....++.
T Consensus 149 el~~~~~~~~---Fliy~~~iil~~~-----il~~~~~p~~g~--tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~ 218 (335)
T KOG2922|consen 149 EVWELATEPG---FLVYVIIIILIVL-----ILIFFYAPRYGQ--TNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN 218 (335)
T ss_pred HHHHHhcCcc---HHHHHHHHHHHHH-----HHheeecccccc--cceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC
Confidence 0 0000011 1222222211111 111111223332 24566776666421 11100 11111122111211
Q ss_pred CCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHhhhheeecC--cccccchh--
Q psy348 181 PLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVT-LVITLRKFVSLLFSIVYFQN--EFTLYHWT-- 255 (293)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~s-v~~~l~~v~t~ils~~~fge--~lt~~~~i-- 255 (293)
.++ ..|.-|.+++....+...-......+++.+++...+ +.-..-..++++.|.++|.| ..+..++.
T Consensus 219 -~ql-------~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~ 290 (335)
T KOG2922|consen 219 -NQL-------FYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGE 290 (335)
T ss_pred -ccc-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 111 233333333222221112223334456666665543 44444567788999999998 67766654
Q ss_pred --hhhHHHHHHHH
Q psy348 256 --GTALVFVGTVI 266 (293)
Q Consensus 256 --G~~lv~~Gv~~ 266 (293)
|...++.|+++
T Consensus 291 ~~Gf~ti~~G~fl 303 (335)
T KOG2922|consen 291 LCGFVTIFLGIFL 303 (335)
T ss_pred HHhHHHhhheeeE
Confidence 56667778755
No 53
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.58 E-value=0.0012 Score=59.89 Aligned_cols=70 Identities=13% Similarity=0.205 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 197 VFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
+..++..++...+.+...+..++++++...++...+.|+++.++++++++|+++..+++|.++++.|+.+
T Consensus 65 ~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l 134 (302)
T TIGR00817 65 LKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVAL 134 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhh
Confidence 3333333333345556677889999999999999999999999999999999999999999999999976
No 54
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.52 E-value=0.00038 Score=54.52 Aligned_cols=74 Identities=14% Similarity=0.278 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccchhhHH-HHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348 17 QHQIELVVMFFITNVCNNYAFDFNIAMPLH-MIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS 91 (293)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~-~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~ 91 (293)
.......++|..+..+...++++ +|.+.. .+......+.+.++++++++|+++..+++++.++++|++..-..+
T Consensus 31 ~~~~~~i~~~~~sf~~ls~al~~-lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 31 GGFILMLVMISLSYIFLSFAVKK-IALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 34556677788999999999998 999884 677788999999999999999999999999999999999886655
No 55
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.51 E-value=0.0013 Score=59.53 Aligned_cols=127 Identities=13% Similarity=0.060 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHH
Q psy348 117 LGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSI 196 (293)
Q Consensus 117 ~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (293)
.++++.++++++|+...+..|...+.. +|.....+-...+..+++++.. .+.. + ...+.
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~--~P~~~~~~R~~~a~l~l~~~~~-----------~~~~--~-----~~~~~- 62 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESL--GPVGGAAMIYSVSGLLLLLTVG-----------FPRL--R-----QFPKR- 62 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHHHHcc-----------cccc--c-----cccHH-
Confidence 467788899999999999998776654 4566666655554433322110 0100 0 00111
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 197 VFYLLGNVLTQYLCISSVYYL----TTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~----i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
.++..++.........+.. .+..++..+++...+.|+++.++++++++|+++..+++|.++.+.|+.+
T Consensus 63 --~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~l 134 (295)
T PRK11689 63 --YLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAW 134 (295)
T ss_pred --HHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhh
Confidence 1111222111222222223 3567888889999999999999999999999999999999999999976
No 56
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.49 E-value=0.0016 Score=59.18 Aligned_cols=121 Identities=15% Similarity=0.165 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHHHHH
Q psy348 120 TLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFY 199 (293)
Q Consensus 120 ~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (293)
++.++++++|+...+..|...+. .+|.+..++-..++....+++. ..+.. ....
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~--~~p~~~~~~R~~~a~~~l~~~~-----------~~~~~----------~~~~--- 60 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHN--MPPLMLAGLRFMLVAFPAIFFV-----------ARPKV----------PLNL--- 60 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHh-----------cCCCC----------chHH---
Confidence 45778899999999999876653 4577777777665432222210 00100 0111
Q ss_pred HHHHHHH-HHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 200 LLGNVLT-QYLCISSVYYLTTE-CNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 200 ~~~~~~~-~~l~~~~~~~~i~~-~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
.+..++. ........+...++ .++..+++...+.|+++.++++++++|+++..+++|.++.+.|+.+
T Consensus 61 ~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~l 129 (299)
T PRK11453 61 LLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLV 129 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHH
Confidence 1111111 11222233456666 5778889899999999999999999999999999999999999876
No 57
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.47 E-value=0.0028 Score=57.34 Aligned_cols=128 Identities=15% Similarity=0.091 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHHHH
Q psy348 119 ITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVF 198 (293)
Q Consensus 119 ~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (293)
++..++..+.|+...+..|...+ +.+|.+..++-..++...++++.. .+ ... . + ....+.
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~~~~--~~------~~~-~--~-------~~~~~~ 69 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLLAFLL--LR------GHP-L--P-------TLRQWL 69 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHH--Hh------CCC-C--C-------cHHHHH
Confidence 44456668999999999987655 446778888877766544333210 00 111 0 0 111222
Q ss_pred HHH-HHHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHH
Q psy348 199 YLL-GNVLTQYLCISSVYYLT-TECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIF 267 (293)
Q Consensus 199 ~~~-~~~~~~~l~~~~~~~~i-~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y 267 (293)
... .+.+....+....+... ++.++..+++...+.|+++.+++.+ ++|+++..+++|..+.+.|+.+-
T Consensus 70 ~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll 139 (292)
T PRK11272 70 NAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLL 139 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHH
Confidence 222 22222222333445566 8899999999999999999999985 79999999999999999998663
No 58
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.45 E-value=0.002 Score=57.44 Aligned_cols=139 Identities=19% Similarity=0.291 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchH
Q psy348 116 SLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPS 195 (293)
Q Consensus 116 ~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (293)
.-|+++.+.|-+.|+....+.+-+ +.. ++.|+..+-...+.|..+...- ...++....+ ....|.
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~~--~~~eIlahRviwS~~~~l~ll~-~~r~~~~~~~-----------~~~~p~ 70 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLL-EPL--PATEILAHRVIWSFPFMLALLF-LLRQWRELKQ-----------LLKQPK 70 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH-ccC--CHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHH-----------HHhCcH
Confidence 469999999999999998888554 322 3568999988888776443211 1111111111 012344
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHhhh
Q psy348 196 IVFYLLGN-VLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQL 270 (293)
Q Consensus 196 ~~~~~~~~-~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~~~ 270 (293)
-+..+..+ .+.+ .......++..+-....+|.--.+.|.+.+++|.++++|+++..|++.+++..+||..=+..
T Consensus 71 ~~~~~~l~a~li~-~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 71 TLLMLALTALLIG-LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHHHHHHHHH-HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 34333332 2222 22222234678888999999999999999999999999999999999999999999774443
No 59
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.44 E-value=0.00059 Score=54.26 Aligned_cols=72 Identities=14% Similarity=0.271 Sum_probs=60.8
Q ss_pred HHHHHH-HHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHH--HhccccChhhhhHHhhhhhhhhheeecc
Q psy348 19 QIELVV-MFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGII--ILKKVYTLDKYVSVIMITLGIIICTIMS 91 (293)
Q Consensus 19 ~~~~~~-~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l--~l~~~~~~~~~~~i~l~~~Gv~i~~~~~ 91 (293)
++..++ +|.++..+-+++++. ++.+...-+.+..++.+++.++. ++||+++.++++|++++++|+.+....+
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~-~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRY-LPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 333444 588889999999997 99999888878888888888875 8999999999999999999999987543
No 60
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.42 E-value=0.00069 Score=51.82 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhH-HHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheee
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPL-HMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTI 89 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~-~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~ 89 (293)
+...+....+|..+..+...+++. +|.+. |.+-.....+.+.+++++++||+.+..+++++.++++|++..-.
T Consensus 29 ~~~~~~~i~~~~~sf~~Ls~al~~-ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 29 LTPSIITVTAMIVSMALLAWAMKS-LPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 344456667788899999999997 99987 58888889999999999999999999999999999999988643
No 61
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.42 E-value=0.00054 Score=55.45 Aligned_cols=72 Identities=10% Similarity=0.161 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhhee
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICT 88 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~ 88 (293)
+...+..+++.+..+...+..+++ +|+-+++++...+.+++.++++++++|+++..++.|++++++|+.+..
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~-tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKL-TSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-cChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 555566677788889999999998 999999999999999999999999999999999999999999998764
No 62
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.00063 Score=51.74 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhH-HHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeec
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPL-HMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIM 90 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~-~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~ 90 (293)
.+......+++..+..+.-.++++ +|.+. |.+-...-.+.+.+.++++++|+.+..+++++.++++|++..-..
T Consensus 30 ~~~~il~~v~~~~sf~~Ls~alk~-ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 30 LWPSILTIVGYGLSFYLLSLALKT-IPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 445566677788889999999998 99988 588888999999999999999999999999999999999876543
No 63
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.36 E-value=0.00087 Score=51.57 Aligned_cols=71 Identities=8% Similarity=0.183 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhH-HHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhhe
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPL-HMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIIC 87 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~-~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~ 87 (293)
+........++..+..+...+++. +|.+. |.+-.....+.+.+.+++++||+++..+++++.+++.|++..
T Consensus 35 ~~~~~~~~~~~~~sf~~Ls~al~~-lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 35 KIYGILSLAAVLAAFSALSQAVKG-IDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 334555666788889999999998 99988 588888889999999999999999999999999999999875
No 64
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.35 E-value=0.0048 Score=57.41 Aligned_cols=131 Identities=9% Similarity=0.055 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHHHHHH
Q psy348 121 LLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYL 200 (293)
Q Consensus 121 l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (293)
+++.--.++..+.++.|.+++..+ .|+.+..+..+++.....++.. .. ....+.. + .....+..+
T Consensus 53 ~~~~wy~~s~~~~~~nK~vl~~~~-~P~~l~~~~~~~~~l~~~~~~~-----~~-~~~~~~~--~------~~~~~~~~l 117 (350)
T PTZ00343 53 LFLTWYALNVLYVVDNKLALNMLP-LPWTISSLQLFVGWLFALLYWA-----TG-FRKIPRI--K------SLKLFLKNF 117 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-hhHHHHHHHHHHHHHHHHHHHH-----hC-CCCCCCC--C------CHHHHHHHH
Confidence 333334455667888888887764 2666666655555322211110 00 0000100 0 011233333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 201 LGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 201 ~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
+..++.+..+....+.+++++++...+++-.+.|+++.++++++++|+++..+++|.++++.|+.+
T Consensus 118 lp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l 183 (350)
T PTZ00343 118 LPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVAL 183 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHh
Confidence 333443333333445689999999999999999999999999999999999999999999999976
No 65
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.23 E-value=0.0012 Score=50.86 Aligned_cols=74 Identities=8% Similarity=0.229 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccchhhHH-HHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348 17 QHQIELVVMFFITNVCNNYAFDFNIAMPLH-MIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS 91 (293)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~-~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~ 91 (293)
.......++|..+..+...+++. +|.+.. .+-....-+.+.++++++++|+++..+++++.++++|++..-..+
T Consensus 31 ~~~i~~~~~~~~sf~~l~~al~~-ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 31 WPSVGTIICYCASFWLLAQTLAY-IPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34445666788888999999998 999885 666778899999999999999999999999999999999986543
No 66
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.20 E-value=0.0021 Score=58.18 Aligned_cols=129 Identities=11% Similarity=0.025 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHHH
Q psy348 118 GITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIV 197 (293)
Q Consensus 118 G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (293)
|+++.++++++|+...+..|+.. +.++.+... ..++...+.... .+ + ..+.. ..+..+
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~~--~~~g~l~~~~~~-~~---~----~~~~~---------~~~~~~ 59 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---GGPYSQTLG--TTFGALILSIAI-AI---F----VLPEF---------WALSIF 59 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---CCHHHHHHH--HHHHHHHHHHHH-HH---H----hCCcc---------cccHHH
Confidence 67889999999999999887654 333333321 112211111100 00 1 11111 123334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHHhhhheeecCcccccc----hhhhhHHHHHHHHHh
Q psy348 198 FYLLGNVLTQYLCISSVYYLTTECNSLTVTLVIT-LRKFVSLLFSIVYFQNEFTLYH----WTGTALVFVGTVIFT 268 (293)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~-l~~v~t~ils~~~fge~lt~~~----~iG~~lv~~Gv~~Y~ 268 (293)
..-+..++.-..++...+.++++.+........+ +.++...+.+.++|+|+.+..+ ++|.++++.|+.+..
T Consensus 60 ~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 60 LVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 4333333323367778888999999999877777 8888999999999999999999 999999999987743
No 67
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.01 E-value=0.003 Score=49.47 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=46.7
Q ss_pred HHHHHHHhhcchhH-HHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHH
Q psy348 212 SSVYYLTTECNSLT-VTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIF 267 (293)
Q Consensus 212 ~~~~~~i~~~sa~~-~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y 267 (293)
..+..++++.+-.. .++..-+.-+.+.++|+++|||++|+.+++|+++++.|+..-
T Consensus 45 ~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l 101 (120)
T PRK10452 45 IFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI 101 (120)
T ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 34445788887666 556567888999999999999999999999999999999774
No 68
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.00 E-value=0.013 Score=54.15 Aligned_cols=136 Identities=12% Similarity=0.029 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhh---hHHH-HHHH-HHhcCCCCCCCccccc
Q psy348 116 SLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLY---KNLY-EHWL-IAVNSTPLPLPSYLSF 190 (293)
Q Consensus 116 ~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~---~~~~-~~~~-~~~~~~~~~~~~~~~~ 190 (293)
..|+++++++.+|++...+-+|+ ++.-++|.. |. ..++...++.. +.+. +.+. .+..
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~----~k~w~wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~------------ 67 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK----VKKWSWETM-WS-VGGIFSWLILPWLIAALLLPDFWAYYSS------------ 67 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc----cCCCchhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHh------------
Confidence 78999999999999998888865 232346655 43 22221111111 1111 1111 1110
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHhhhheeecC-------cccccchhhhhHHHH
Q psy348 191 ISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLT-VTLVITLRKFVSLLFSIVYFQN-------EFTLYHWTGTALVFV 262 (293)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~-~sv~~~l~~v~t~ils~~~fge-------~lt~~~~iG~~lv~~ 262 (293)
.++..+...++.++.--+++...+..+++.+-.. ..+..-+.-+.+.+++.+++|| +-.....+|+++++.
T Consensus 68 -~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~lili 146 (345)
T PRK13499 68 -FSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALI 146 (345)
T ss_pred -cCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHH
Confidence 1233344433333322266777777788887655 5566667778899999999986 222347789999999
Q ss_pred HHHHHhhh
Q psy348 263 GTVIFTQL 270 (293)
Q Consensus 263 Gv~~Y~~~ 270 (293)
|+.+-++.
T Consensus 147 Gi~l~s~A 154 (345)
T PRK13499 147 GVAIVGRA 154 (345)
T ss_pred HHHHHHHh
Confidence 99886653
No 69
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.00 E-value=0.12 Score=47.89 Aligned_cols=226 Identities=15% Similarity=0.161 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHhhhhhhcccchhhHHH-HHhhchhHHHHHHHHHHhcccc---C----hhhhhHHhhhhhhhhheeecc
Q psy348 20 IELVVMFFITNVCNNYAFDFNIAMPLHM-IFRAGSLITNMIMGIIILKKVY---T----LDKYVSVIMITLGIIICTIMS 91 (293)
Q Consensus 20 ~~~~~~~~~~~~~~~~~L~y~vs~s~~~-~~~~~~pi~t~l~~~l~l~~~~---~----~~~~~~i~l~~~Gv~i~~~~~ 91 (293)
++-++++..+++....+++| +-+|... +...+..+...++..++++|=. + ..-..+++++++|+++.+...
T Consensus 77 ~l~G~~W~iG~i~~~~s~~~-iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 77 FLFGALWGIGGITYGLTMRY-LGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHHHHhhhhhHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556788889999999999 8888874 6667888899999999988533 2 446788999999999999833
Q ss_pred CccccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHcCCCCcchhhhhhhhhHHHHH-
Q psy348 92 SQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGI-------YQEVLYKTHGKYPYEALYYTHLLPLPAFA- 163 (293)
Q Consensus 92 ~~~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v-------~~~~l~~~~~~~~~~~~~y~~~~~~~~~l- 163 (293)
.....+.. .+++++++ ...|.++.++|.+.++.|+. ..+.. ...+.++ .|.. +|.+.
T Consensus 156 ~~k~~~~~--~~~~~~~~-----~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a-~~~g~~~----~~~~---lp~~~~ 220 (345)
T PRK13499 156 QLKERKMG--IKKAEEFN-----LKKGLILAVMSGIFSACFSFAMDAGKPMHEAA-AALGVDP----LYAA---LPSYVV 220 (345)
T ss_pred hhcccccc--cccccccc-----hHhHHHHHHHHHHHHHHHHHHHhhccchhhhh-hhcCCCc----hHHH---HHHHHH
Confidence 22111000 00001111 36899999999999999883 33221 1123222 1211 12111
Q ss_pred -----HhhhHHHHHHHHHhcCCCCCCCcccccccc-----hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH---HH
Q psy348 164 -----FLYKNLYEHWLIAVNSTPLPLPSYLSFISI-----PSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTL---VI 230 (293)
Q Consensus 164 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv---~~ 230 (293)
+....++..+.... +...+... .... ..-.....+.++.-++++......-++.+.....+ ..
T Consensus 221 ~~~G~~~~n~~~~~~~~~k-~~~~~~~~---~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~ 296 (345)
T PRK13499 221 IMGGGAITNLGFCFIRLAK-NKDLSLKA---DFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLH 296 (345)
T ss_pred HHHHHHHHHHHHHHHHHhh-CCCcccch---hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHh
Confidence 01111111111111 11110000 0011 11122233333434455555555556664443333 22
Q ss_pred -HHHHHHHHhhhheeecCccc------ccchhhhhHHHHHHHH
Q psy348 231 -TLRKFVSLLFSIVYFQNEFT------LYHWTGTALVFVGTVI 266 (293)
Q Consensus 231 -~l~~v~t~ils~~~fge~lt------~~~~iG~~lv~~Gv~~ 266 (293)
-+.-+++.+-|+ +++|.=+ ...++|.++++.|..+
T Consensus 297 m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~l 338 (345)
T PRK13499 297 MSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANI 338 (345)
T ss_pred ccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHH
Confidence 444467777777 5999666 6678999999999876
No 70
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=96.99 E-value=0.0022 Score=58.11 Aligned_cols=65 Identities=12% Similarity=0.064 Sum_probs=59.4
Q ss_pred HHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348 26 FFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS 91 (293)
Q Consensus 26 ~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~ 91 (293)
...+..+.|.++++ ++++..+++..+.|++..++++++++|+++..+++|+++++.|++......
T Consensus 219 t~~~~~l~~~~~~~-~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 219 TALPYSLEMIALTR-LPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHHHHh-cChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 45667788999998 999999999999999999999999999999999999999999998876544
No 71
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.97 E-value=0.016 Score=51.26 Aligned_cols=136 Identities=15% Similarity=0.123 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchH
Q psy348 116 SLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPS 195 (293)
Q Consensus 116 ~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (293)
..+..+.+.+.+.++......+...+. .........+....+........ . . ...... + ...+
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~----~---~~~~~~--~-----~~~~- 68 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLL-L----L---EPRGLR--P-----ALRP- 68 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHH-H----h---hccccc--c-----cccc-
Confidence 567778888888888888877766554 11222233323333222211110 0 0 000001 0 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhh-eeecCcccccchhhhhHHHHHHHHHh
Q psy348 196 IVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSI-VYFQNEFTLYHWTGTALVFVGTVIFT 268 (293)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~-~~fge~lt~~~~iG~~lv~~Gv~~Y~ 268 (293)
.+...+...+....+....+..++++++...++.....|+++.++++ ++++|+++..+++|..+.+.|+.+-.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~ 142 (292)
T COG0697 69 WLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLIL 142 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhee
Confidence 12223333333335556677789999999999999999999999997 77799999999999999999997733
No 72
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.86 E-value=0.0031 Score=55.68 Aligned_cols=60 Identities=13% Similarity=0.286 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348 209 LCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT 268 (293)
Q Consensus 209 l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~ 268 (293)
+.+...|..+++.+|.+..+....|.++|.++++++++.+++..||++..+.+.|+.+..
T Consensus 29 ~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~ 88 (244)
T PF04142_consen 29 IQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQ 88 (244)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheee
Confidence 555667789999999999999999999999999999999999999999999999998744
No 73
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.83 E-value=0.0055 Score=47.29 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=46.7
Q ss_pred HHHHHHhhcchhH-HHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHH
Q psy348 213 SVYYLTTECNSLT-VTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIF 267 (293)
Q Consensus 213 ~~~~~i~~~sa~~-~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y 267 (293)
....++++.+-.. .++..-+.-+.+.+.|+++|||++++.+++|+++++.|+..-
T Consensus 46 ~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l 101 (110)
T PRK09541 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVI 101 (110)
T ss_pred HHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445688888766 566677888999999999999999999999999999999773
No 74
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.74 E-value=0.013 Score=53.31 Aligned_cols=62 Identities=11% Similarity=0.164 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHhhh
Q psy348 209 LCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQL 270 (293)
Q Consensus 209 l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~~~ 270 (293)
+.....+.++++.|..+..+.-..+++.++++++++++++.+..++.+.+++..|+.+++..
T Consensus 76 ~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~ 137 (303)
T PF08449_consen 76 LASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLS 137 (303)
T ss_pred HHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeec
Confidence 33344556899999999999999999999999999999999999999999999999987744
No 75
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0087 Score=45.58 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=46.1
Q ss_pred HHHhhcchhH-HHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 216 YLTTECNSLT-VTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 216 ~~i~~~sa~~-~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
..+++.+-.+ .++.+-+-.+.+.+.|+++|||++++.+++|++++++|+..
T Consensus 49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~ 100 (106)
T COG2076 49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIG 100 (106)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHH
Confidence 4688888665 78889999999999999999999999999999999999965
No 76
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.68 E-value=0.0032 Score=48.67 Aligned_cols=71 Identities=13% Similarity=0.215 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHH-hhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhhe
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIF-RAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIIC 87 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~-~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~ 87 (293)
..+|..+-+++-.+++..++.|.- .|.|...-+ .++.-++|++.++++.+|..+++.+.|+.+++.|+.++
T Consensus 41 n~~y~ipf~lNq~GSv~f~~~L~~-~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 41 NPKYIIPFLLNQSGSVLFFLLLGS-ADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-CCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 457778888899999999999996 899998644 68999999999999999999999999999999999875
No 77
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.66 E-value=0.0098 Score=45.76 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=46.7
Q ss_pred HHHHHHhhcchhH-HHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 213 SVYYLTTECNSLT-VTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 213 ~~~~~i~~~sa~~-~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
....++++.+-.+ .++..-+..+.+.+.|+++|||++++.+++|+++++.|+..
T Consensus 51 ~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~ 105 (109)
T PRK10650 51 ALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVM 105 (109)
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3334678887665 78888889999999999999999999999999999999965
No 78
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.53 E-value=0.015 Score=53.03 Aligned_cols=115 Identities=17% Similarity=0.092 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccch
Q psy348 115 WSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIP 194 (293)
Q Consensus 115 ~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (293)
...|..+.+.++++.+...++||+-..|.+.....-- ... .+ + ..+|
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~~~----------------------~~-----~----l~~~ 51 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--SGG----------------------RS-----Y----LRRP 51 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--chh----------------------hH-----H----HhhH
Confidence 3899999999999999999999988776543111000 000 00 0 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 195 SIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
.+|..+.+.+++. ..-+.+....++...+..+.+.-+.+.+++-.+++|+++...++|.++++.|..+
T Consensus 52 ~W~~G~~~~~~g~----~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~l 119 (300)
T PF05653_consen 52 LWWIGLLLMVLGE----ILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVL 119 (300)
T ss_pred HHHHHHHHHhcch----HHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhhee
Confidence 4455554444433 2334577888888899999999999999999999999999999999999999866
No 79
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.53 E-value=0.013 Score=44.84 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=46.5
Q ss_pred HHHHHhhcchhH-HHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 214 VYYLTTECNSLT-VTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 214 ~~~~i~~~sa~~-~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
...++++.+-.. .++..-+..+.+.+.|+++|||++++.+++|+++++.|++.
T Consensus 46 Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~ 99 (105)
T PRK11431 46 LAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIG 99 (105)
T ss_pred HHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Confidence 334678887655 78888899999999999999999999999999999999976
No 80
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.49 E-value=0.0072 Score=45.13 Aligned_cols=61 Identities=13% Similarity=0.284 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhhhhhhcccchhhHH-HHHhhchhHHHHHHHHHHhccccChhhhhHHhhh
Q psy348 19 QIELVVMFFITNVCNNYAFDFNIAMPLH-MIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMI 80 (293)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~L~y~vs~s~~-~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~ 80 (293)
......+|..+..+...+++. +|.+.. .+......+.+.+.+.+++||+.+..|+.++.++
T Consensus 32 ~~~~~~~~~~s~~~l~~al~~-lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 32 TILAVVGYGLSFYFLSLALKK-LPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp --HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 334444788889999999997 999885 7888899999999999999999999999998764
No 81
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.22 E-value=0.084 Score=42.40 Aligned_cols=130 Identities=22% Similarity=0.244 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHHHH
Q psy348 119 ITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVF 198 (293)
Q Consensus 119 ~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (293)
.++.+++-++-+++...+.++.++.+ +|+...+.++..+......+. .+.+. +.. +.. ...| .|.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~-~~~~~-------~~~--~~~---~~~p-~w~ 67 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIIL-LITGR-------PSL--ASL---SSVP-WWA 67 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHH-HHhcc-------ccc--chh---ccCC-hHH
Confidence 34555566666777888888877766 466666666666644322211 00010 000 000 0111 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhe--eec---CcccccchhhhhHHHHHHH
Q psy348 199 YLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIV--YFQ---NEFTLYHWTGTALVFVGTV 265 (293)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~--~fg---e~lt~~~~iG~~lv~~Gv~ 265 (293)
++ .++.+..........+.+.++.........-++++.++=-- +|| +++++.+.+|.++++.|+.
T Consensus 68 ~l--GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 68 YL--GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred hc--cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 22 23333233444556789999999999988888877655443 344 5999999999999999985
No 82
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.21 E-value=0.077 Score=48.99 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 196 IVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
.|.+++.+ +.=+.+|.....+.++++.+..++......++++++|+++++++.++.|++|++++++|+.+
T Consensus 79 ~w~y~lla-~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~l 148 (334)
T PF06027_consen 79 WWKYFLLA-LLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVL 148 (334)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhh
Confidence 35555553 34446777777889999999999999999999999999999999999999999999999876
No 83
>KOG4510|consensus
Probab=95.71 E-value=0.0015 Score=57.54 Aligned_cols=64 Identities=13% Similarity=0.334 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHH
Q psy348 204 VLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIF 267 (293)
Q Consensus 204 ~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y 267 (293)
++.++.+....|++..+.+-.-+++++-..|+++++++|++++|+.|....+|..+.+.|+++-
T Consensus 104 g~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLI 167 (346)
T KOG4510|consen 104 GFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLI 167 (346)
T ss_pred hhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEE
Confidence 4444455566778899999999999999999999999999999999999999999999999773
No 84
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.44 E-value=0.034 Score=41.48 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=26.9
Q ss_pred HHHHHHhhcchhHH-HHHHHHHHHHHHhhhheeecCcccccchhhhhHH
Q psy348 213 SVYYLTTECNSLTV-TLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALV 260 (293)
Q Consensus 213 ~~~~~i~~~sa~~~-sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv 260 (293)
....++++.+...+ .+..-+..+.+.+.|+++|||++|+.+++|++++
T Consensus 45 ~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 45 FLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 44457888887775 6667788999999999999999999999999875
No 85
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.96 E-value=0.0044 Score=53.99 Aligned_cols=210 Identities=13% Similarity=0.171 Sum_probs=127.5
Q ss_pred HHHHHHHHHhhhhhhcccchhhHHH-HHhhchhHHHHHHHHHHhccccChhhh----hHHhhhhhhhhheeeccCccccc
Q psy348 23 VVMFFITNVCNNYAFDFNIAMPLHM-IFRAGSLITNMIMGIIILKKVYTLDKY----VSVIMITLGIIICTIMSSQEIKK 97 (293)
Q Consensus 23 ~~~~~~~~~~~~~~L~y~vs~s~~~-~~~~~~pi~t~l~~~l~l~~~~~~~~~----~~i~l~~~Gv~i~~~~~~~~~~~ 97 (293)
+.++..+....+-+.++ +.+|... +-.....+-+.+++++.+||=.+..|. .+++++++|+.+.+..|..+..
T Consensus 66 G~~Ws~GQ~~Qfka~~~-iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~- 143 (288)
T COG4975 66 GAFWSFGQANQFKAIQL-IGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKE- 143 (288)
T ss_pred hhHhhhhhhhhhhheee-eeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccccc-
Confidence 34577778888889998 8877764 444466777788999999998777664 5778889999999988754321
Q ss_pred cCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHh
Q psy348 98 YGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAV 177 (293)
Q Consensus 98 ~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~ 177 (293)
++ ++.+ .-.|....+.|.+.+-.|.+..+.. +.+-+.... -+.+++....+ .....
T Consensus 144 -----~~-~~~n-----~kkgi~~L~iSt~GYv~yvvl~~~f----~v~g~saiL-PqAiGMv~~al----i~~~~---- 199 (288)
T COG4975 144 -----EE-NPSN-----LKKGIVILLISTLGYVGYVVLFQLF----DVDGLSAIL-PQAIGMVIGAL----ILGFF---- 199 (288)
T ss_pred -----cc-ChHh-----hhhheeeeeeeccceeeeEeeeccc----cccchhhhh-HHHHHHHHHHH----HHhhc----
Confidence 11 1111 2568888888888888887766432 222222111 11222221111 11100
Q ss_pred cCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccc----
Q psy348 178 NSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYH---- 253 (293)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~---- 253 (293)
..+. ..+-..|.-+....+.+ .+|...+.+.++.+-.+.=-.+-+--+++.+-|+++++|+=|..+
T Consensus 200 ~~~~---------~~~K~t~~nii~G~~Wa-~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v 269 (288)
T COG4975 200 KMEK---------RFNKYTWLNIIPGLIWA-IGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYV 269 (288)
T ss_pred cccc---------chHHHHHHHHhhHHHHH-hhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhh
Confidence 1010 01223344444444444 666666667777776654334445567788999999999777654
Q ss_pred hhhhhHHHHHHHHHh
Q psy348 254 WTGTALVFVGTVIFT 268 (293)
Q Consensus 254 ~iG~~lv~~Gv~~Y~ 268 (293)
++|+.+++.|..+-.
T Consensus 270 ~iGiilivvgai~lg 284 (288)
T COG4975 270 IIGIILIVVGAILLG 284 (288)
T ss_pred hhhHHHHHHHhhhhh
Confidence 678888888876633
No 86
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=94.92 E-value=0.085 Score=47.08 Aligned_cols=72 Identities=8% Similarity=0.077 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHHHhhhheeecCcccccc----hhhhhHHHHHHHH
Q psy348 195 SIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVI-TLRKFVSLLFSIVYFQNEFTLYH----WTGTALVFVGTVI 266 (293)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~-~l~~v~t~ils~~~fge~lt~~~----~iG~~lv~~Gv~~ 266 (293)
..+...+++++.-.+++...|.+.++.+.+.+...+ -++-+.+.+.++++|||--+..+ .+++++++.|+.+
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~l 119 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVIL 119 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 444444555544447888888888888888776665 45556688999999999555444 4488889999866
No 87
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.65 E-value=0.045 Score=47.33 Aligned_cols=69 Identities=10% Similarity=0.142 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhh
Q psy348 17 QHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIII 86 (293)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i 86 (293)
...+.+.++....-.+-+..++| .+..+..+...+.++++.++++++++++++..++.|+.++..|+.+
T Consensus 153 ~~~~~~~~~~a~~~~~v~~vlk~-~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 153 TAVWIVGLLNVGGGLCIGGVVRY-ADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred hHHHHHHHHHHhcCceeeehhHH-hHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 33445555566667788999999 8999999999999999999999999999999999999999998754
No 88
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=94.30 E-value=0.075 Score=46.67 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=54.1
Q ss_pred HHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348 30 NVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS 91 (293)
Q Consensus 30 ~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~ 91 (293)
..+...+|+. .+.+.+.++-++.|.+-.+.++++++|+++..||+++..++.+.+=.....
T Consensus 224 YsLEmiAL~r-lp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~ 284 (292)
T COG5006 224 YSLEMIALRR-LPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTA 284 (292)
T ss_pred hHHHHHHHhh-CChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccccc
Confidence 4678889997 999999999999999999999999999999999999999998876555443
No 89
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=93.88 E-value=0.076 Score=41.06 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHhhhheeecCcccccchhhhhHHHHHHH
Q psy348 194 PSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLV-ITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTV 265 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~-~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~ 265 (293)
|..+...++|-.++ ..+++.+++.+-+.+..+ ..+.=++|.+.++++.+|..+...++|+++++.|+.
T Consensus 42 ~~y~ipf~lNq~GS----v~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~ 110 (113)
T PF10639_consen 42 PKYIIPFLLNQSGS----VLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVA 110 (113)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCee
Confidence 33444455554444 244556888877666655 477889999999998888999999999999999974
No 90
>KOG2765|consensus
Probab=93.66 E-value=0.057 Score=49.90 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348 201 LGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT 268 (293)
Q Consensus 201 ~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~ 268 (293)
+.-|...++++.....+++.++....++......+++.+++.++-+|++|+...++..+.++|+++-+
T Consensus 163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt 230 (416)
T KOG2765|consen 163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVT 230 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEE
Confidence 33455566777777778999999999999999999999999999999999999999999999987733
No 91
>KOG2234|consensus
Probab=91.60 E-value=0.54 Score=43.25 Aligned_cols=58 Identities=17% Similarity=0.413 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 209 LCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 209 l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
+-|...|....+.+|.+.++...++-..|.++++++++++++.+||...++.++|+.+
T Consensus 104 lqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~ 161 (345)
T KOG2234|consen 104 LQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVAL 161 (345)
T ss_pred HhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 4455667789999999999999999999999999999999999999999999999977
No 92
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=89.99 E-value=0.36 Score=42.79 Aligned_cols=66 Identities=14% Similarity=0.068 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhcchhH-HHHHHHHHHHHHHhhhhe-eecC-----cccccchhhhhHHHHHHHHHhhhcccc
Q psy348 209 LCISSVYYLTTECNSLT-VTLVITLRKFVSLLFSIV-YFQN-----EFTLYHWTGTALVFVGTVIFTQLVPSL 274 (293)
Q Consensus 209 l~~~~~~~~i~~~sa~~-~sv~~~l~~v~t~ils~~-~fge-----~lt~~~~iG~~lv~~Gv~~Y~~~~~k~ 274 (293)
.+|.....+++..+=.. ..+-++..-+.....|-+ +||+ .-.+++++|+++++.|..+|..+.++.
T Consensus 67 ~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 67 TGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred cCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 34444444566655333 344455555556666643 6764 456789999999999999998765444
No 93
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=89.78 E-value=5.5 Score=36.76 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhh
Q psy348 115 WSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYT 154 (293)
Q Consensus 115 ~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~ 154 (293)
...|+++..++.++++.+.+=.|+. ..=++|.....
T Consensus 5 ii~Gii~h~iGg~~~~sfy~P~kkv----k~WsWEs~Wlv 40 (344)
T PF06379_consen 5 IILGIIFHAIGGFASGSFYVPFKKV----KGWSWESYWLV 40 (344)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhc----CCccHHHHHHH
Confidence 4899999999999998877766543 33346765544
No 94
>KOG1580|consensus
Probab=89.70 E-value=0.3 Score=42.52 Aligned_cols=80 Identities=5% Similarity=0.065 Sum_probs=65.6
Q ss_pred ccccch--hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhhe
Q psy348 10 IIPRHI--NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIIC 87 (293)
Q Consensus 10 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~ 87 (293)
+..|++ ++++..++++-+++..+-+.-..+ -++=+.+++..+.-.||++.++++++...+.+||++..+...|...=
T Consensus 233 F~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~-FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 233 FVQRHPYVFWDLTLLAIASCLGQWFIFKTVEE-FGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred HHHhccHHHHHHHHHHHHHHhhhHHHHHHHHH-hCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence 334555 888889999888888887777776 56666778888889999999999999999999999999999888664
Q ss_pred eec
Q psy348 88 TIM 90 (293)
Q Consensus 88 ~~~ 90 (293)
..+
T Consensus 312 ~~~ 314 (337)
T KOG1580|consen 312 VVD 314 (337)
T ss_pred hhc
Confidence 444
No 95
>KOG4831|consensus
Probab=86.17 E-value=0.95 Score=34.33 Aligned_cols=72 Identities=11% Similarity=0.123 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHH-HHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhhee
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHM-IFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICT 88 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~-~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~ 88 (293)
.++|+++-.++-+++.+.+.-|.. .+.+... +..+++-.++.+.+..+-.|...++.++|..++++|+.++.
T Consensus 52 ~w~Y~iPFllNqcgSaly~~tLa~-a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 52 NWEYLIPFLLNQCGSALYYLTLAS-APISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHhc-CCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 567888888889999999999986 7888775 55667888999999888888888999999999999987753
No 96
>KOG1441|consensus
Probab=85.40 E-value=0.22 Score=45.61 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccC
Q psy348 21 ELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSS 92 (293)
Q Consensus 21 ~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~ 92 (293)
..++++++.+...++.+.. +|+=+++++...+-+.+...++++++++.+..+.+|..++++|+.+......
T Consensus 240 ~~sv~~f~~Nls~f~~ig~-tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~ 310 (316)
T KOG1441|consen 240 LNSVLAFLLNLSAFLVIGR-TSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKL 310 (316)
T ss_pred HHHHHHHHHHHHHHHHHcc-cCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 3446778888899999996 9999999999999999999999999999999999999999999998876543
No 97
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.25 E-value=17 Score=29.52 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchH
Q psy348 116 SLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPS 195 (293)
Q Consensus 116 ~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (293)
.+..++.+.+-++-.++...+.++.+..+ +|.-..+.++..+...+..+. -+.+ ..+.+. . .... .
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~-l~~~------~~~~~a--~---~~~~-p 69 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILL-LIKQ------GHPGLA--A---VASA-P 69 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHH-HHhc------CCCchh--h---ccCC-c
Confidence 45667777777777888888888877665 454444555555543332211 0011 111111 0 0011 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhh--heeec---CcccccchhhhhHHHHHHHH
Q psy348 196 IVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFS--IVYFQ---NEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils--~~~fg---e~lt~~~~iG~~lv~~Gv~~ 266 (293)
.|.++-. .+++ +.....-....+.++.+........+++.-++- +=+|| .+++...++|++++++|+.+
T Consensus 70 wW~~~GG-~lGa-~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~ 143 (150)
T COG3238 70 WWAWIGG-LLGA-IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILL 143 (150)
T ss_pred hHHHHcc-chhh-hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHH
Confidence 2333221 1222 222233346789999888887777766655433 22333 39999999999999999644
No 98
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=84.53 E-value=0.88 Score=31.38 Aligned_cols=20 Identities=5% Similarity=0.137 Sum_probs=16.2
Q ss_pred chhhhhHHHHHHHHHhhhcc
Q psy348 253 HWTGTALVFVGTVIFTQLVP 272 (293)
Q Consensus 253 ~~iG~~lv~~Gv~~Y~~~~~ 272 (293)
-.++++.++.|..+|..+-.
T Consensus 6 iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999996533
No 99
>KOG1581|consensus
Probab=84.48 E-value=1.2 Score=40.33 Aligned_cols=76 Identities=8% Similarity=0.138 Sum_probs=60.8
Q ss_pred ccch--hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhhee
Q psy348 12 PRHI--NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICT 88 (293)
Q Consensus 12 ~~~~--~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~ 88 (293)
.+|+ ++|.+..+.+-..+..+-++-++- --.=+.+++..+.-++.++++.+.++.+.+..||+++++...|+..=.
T Consensus 235 ~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~-FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 235 KEHPDVAFDILLYSTCGAVGQLFIFYTIER-FGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEI 312 (327)
T ss_pred HcChhHHHHHHHHHHhhhhhhheehhhHhh-cccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHH
Confidence 4444 999999999988888877777664 344445566667788999999999999999999999999888886543
No 100
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=83.55 E-value=1.6 Score=38.40 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHHhhhheeecCcccccch----hhhhHHHHHHHH
Q psy348 196 IVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVIT-LRKFVSLLFSIVYFQNEFTLYHW----TGTALVFVGTVI 266 (293)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~-l~~v~t~ils~~~fge~lt~~~~----iG~~lv~~Gv~~ 266 (293)
.+..-+.++..-.+++...|.+++..+...++..++ .+-+.+.+.|++.|||=-+..|. +..++++.|+++
T Consensus 58 ~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~l 133 (288)
T COG4975 58 IFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYL 133 (288)
T ss_pred hHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheE
Confidence 343333333332367777778888877777665554 45566779999999995555543 456677888744
No 101
>KOG2922|consensus
Probab=82.13 E-value=0.62 Score=42.36 Aligned_cols=131 Identities=14% Similarity=0.114 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchH
Q psy348 116 SLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPS 195 (293)
Q Consensus 116 ~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (293)
..|..+.+.+.+.-+...+..|+-++|.+..... . + +++ + ++ ...+.
T Consensus 20 ~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~r--a--------------~----------~gg-~--~y----l~~~~ 66 (335)
T KOG2922|consen 20 IIGLVLAISSSIFIGSSFILKKKGLKRAGASGLR--A--------------G----------EGG-Y--GY----LKEPL 66 (335)
T ss_pred eeeeeehhhccEEEeeehhhhHHHHHHHhhhccc--c--------------c----------CCC-c--ch----hhhHH
Confidence 7888888888888787778887777665431000 0 0 000 0 11 12345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHhhhccccc
Q psy348 196 IVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQLVPSLM 275 (293)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~~~~~k~~ 275 (293)
+|..+++..++- ++| |.+-.--+++..+..+.+.-+.+.+++..+++|+++....+|.++++.|. +.....-++
T Consensus 67 Ww~G~ltm~vGe-i~N---FaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gs--t~iV~haP~ 140 (335)
T KOG2922|consen 67 WWAGMLTMIVGE-IAN---FAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGS--TTIVIHAPK 140 (335)
T ss_pred HHHHHHHHHHHh-Hhh---HHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEeccc--EEEEEecCc
Confidence 566666655544 233 33456667778888888888999999999999999999999999999998 446666656
Q ss_pred cccccccchh
Q psy348 276 GMFGEKTKKS 285 (293)
Q Consensus 276 ~~~~~~~~~~ 285 (293)
+.+.+..++.
T Consensus 141 e~~i~t~~el 150 (335)
T KOG2922|consen 141 EQEIESVEEV 150 (335)
T ss_pred ccccccHHHH
Confidence 6555555544
No 102
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=81.17 E-value=2.8 Score=36.43 Aligned_cols=74 Identities=8% Similarity=0.067 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348 17 QHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS 91 (293)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~ 91 (293)
-..++-+++-++-.+++-+|++- +|..++.++.++.-.+..+.+.+++++..++..+.++++-.+..++...+.
T Consensus 225 ~am~ISgl~svgiSy~saWcvrV-tSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavak 298 (309)
T COG5070 225 MAMFISGLCSVGISYCSAWCVRV-TSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAK 298 (309)
T ss_pred HHHHHHHHHHhhhhhccceeEee-hhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777778999999998 899999999999999999999999999999999999999887777776554
No 103
>KOG3912|consensus
Probab=78.44 E-value=2.9 Score=37.60 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=44.0
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 214 VYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 214 ~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
.|..+..++|+...+.--..-+++-++|..+++..++..||.|+..+..|+++
T Consensus 103 m~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlvi 155 (372)
T KOG3912|consen 103 MYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVI 155 (372)
T ss_pred HHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhhe
Confidence 34456777777777666666678889999999999999999999999999976
No 104
>KOG4314|consensus
Probab=76.13 E-value=2.3 Score=36.24 Aligned_cols=54 Identities=9% Similarity=0.221 Sum_probs=49.1
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348 215 YYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT 268 (293)
Q Consensus 215 ~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~ 268 (293)
...+++.+|+.++-...+...+..+++++.+||.+....++...+.+.|++..+
T Consensus 71 l~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmia 124 (290)
T KOG4314|consen 71 LLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIA 124 (290)
T ss_pred HHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEE
Confidence 347899999999999999999999999999999999999999999999986533
No 105
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=72.61 E-value=2.8 Score=28.61 Aligned_cols=14 Identities=36% Similarity=0.278 Sum_probs=6.1
Q ss_pred cccccchhhhhhhc
Q psy348 278 FGEKTKKSKKEKKK 291 (293)
Q Consensus 278 ~~~~~~~~~~~~~~ 291 (293)
-++++.++||+-||
T Consensus 44 p~kkkpvskkk~k~ 57 (69)
T PF04689_consen 44 PKKKKPVSKKKMKR 57 (69)
T ss_pred CCCCCcccHHHHHH
Confidence 33444444444444
No 106
>KOG0009|consensus
Probab=72.50 E-value=1.7 Score=28.98 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=14.0
Q ss_pred ccccccccccchhhhhhhccC
Q psy348 273 SLMGMFGEKTKKSKKEKKKTK 293 (293)
Q Consensus 273 k~~~~~~~~~~~~~~~~~~~~ 293 (293)
+.-+-..|+-|++|+||||+|
T Consensus 10 rAGKVr~QTPKv~kqeK~kkk 30 (62)
T KOG0009|consen 10 RAGKVRGQTPKVEKQEKKKKK 30 (62)
T ss_pred hcccccccCCcchhhhhcccc
Confidence 334455677788888877764
No 107
>KOG1444|consensus
Probab=68.84 E-value=44 Score=30.59 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=48.8
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348 216 YLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT 268 (293)
Q Consensus 216 ~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~ 268 (293)
..+++.+-...++.-++.++++.+.-..+|+-..+...+.......+|...+.
T Consensus 96 ~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 96 KSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred ccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence 46899999999999999999999999999999999999999999999987654
No 108
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=67.99 E-value=1.7 Score=38.88 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhh
Q psy348 116 SLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYY 153 (293)
Q Consensus 116 ~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y 153 (293)
..|.++.++.++..-..++|. .++++++++.|+++.+
T Consensus 106 F~Gi~~l~l~~lLaL~vW~Ym-~lLr~~GAs~WtiLaF 142 (381)
T PF05297_consen 106 FVGIVILFLCCLLALGVWFYM-WLLRELGASFWTILAF 142 (381)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHH
Confidence 678888777766655566674 4889999888887665
No 109
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=66.47 E-value=2.7 Score=26.50 Aligned_cols=10 Identities=20% Similarity=0.813 Sum_probs=6.2
Q ss_pred HHHHHHHhhh
Q psy348 261 FVGTVIFTQL 270 (293)
Q Consensus 261 ~~Gv~~Y~~~ 270 (293)
-.|+.+|..+
T Consensus 20 ~iGl~IyQki 29 (49)
T PF11044_consen 20 WIGLSIYQKI 29 (49)
T ss_pred HHHHHHHHHH
Confidence 3667777754
No 110
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=63.59 E-value=9.3 Score=29.09 Aligned_cols=40 Identities=8% Similarity=0.150 Sum_probs=34.0
Q ss_pred chhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348 52 GSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS 91 (293)
Q Consensus 52 ~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~ 91 (293)
...+...+..+.+-|++|++..+++..++++|+.+....+
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 3455566788999999999999999999999999987654
No 111
>PRK02237 hypothetical protein; Provisional
Probab=62.86 E-value=9.8 Score=29.04 Aligned_cols=40 Identities=3% Similarity=-0.007 Sum_probs=33.1
Q ss_pred chhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348 52 GSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS 91 (293)
Q Consensus 52 ~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~ 91 (293)
...+...+..+.+-|+||++..+.+..++++|+.++...+
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 3344555788999999999999999999999998886654
No 112
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=62.78 E-value=2.8 Score=35.60 Aligned_cols=16 Identities=56% Similarity=0.549 Sum_probs=8.7
Q ss_pred cccccchhhhhhhccC
Q psy348 278 FGEKTKKSKKEKKKTK 293 (293)
Q Consensus 278 ~~~~~~~~~~~~~~~~ 293 (293)
+.++++++|||+||+|
T Consensus 181 ~~~~~~~~~~~~kk~~ 196 (196)
T PF08229_consen 181 EKEEKKKEKKESKKKK 196 (196)
T ss_pred ccccccchhhhhhcCC
Confidence 3344455556666665
No 113
>PF14981 FAM165: FAM165 family
Probab=59.01 E-value=4.4 Score=25.76 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHh
Q psy348 257 TALVFVGTVIFT 268 (293)
Q Consensus 257 ~~lv~~Gv~~Y~ 268 (293)
.++.++|+=+|.
T Consensus 20 lClaFAgvK~yQ 31 (51)
T PF14981_consen 20 LCLAFAGVKMYQ 31 (51)
T ss_pred HHHHHhhHHHHH
Confidence 467888987765
No 114
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=58.97 E-value=41 Score=31.19 Aligned_cols=113 Identities=17% Similarity=0.211 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHH-HHhhchhHHHHHHHHHH-------hccccChhhhhHHhhhhhhhhhe
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHM-IFRAGSLITNMIMGIII-------LKKVYTLDKYVSVIMITLGIIIC 87 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~-~~~~~~pi~t~l~~~l~-------l~~~~~~~~~~~i~l~~~Gv~i~ 87 (293)
+......++++-.+....-.+.+| +-+|.-+ +.-.+.-++=.++--++ +..+-....+++++++++|+++.
T Consensus 73 l~~~~l~G~lWGIGgltfGl~mry-LGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~ 151 (344)
T PF06379_consen 73 LFWTFLFGVLWGIGGLTFGLAMRY-LGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAIC 151 (344)
T ss_pred HHHHHHHHHHHhcchhhHhHHHHH-HhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHH
Confidence 445566677777777777778888 6665532 22222222222222222 22344567899999999999999
Q ss_pred eeccCccccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHH
Q psy348 88 TIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQE 137 (293)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~ 137 (293)
...+.....+.+ . ++++++ .-.|.++.++|-+++|..+.-.+
T Consensus 152 g~AG~~Ke~~~~--~-~~~efn-----~~kGl~iAv~sGv~Sa~fn~g~~ 193 (344)
T PF06379_consen 152 GKAGSMKEKELG--E-EAKEFN-----FKKGLIIAVLSGVMSACFNFGLD 193 (344)
T ss_pred hHHHHhhhhhhc--c-chhhhh-----hhhhHHHHHHHHHHHHHHHHHHH
Confidence 877543211110 1 112333 46899999999888888776554
No 115
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=56.87 E-value=44 Score=25.45 Aligned_cols=60 Identities=8% Similarity=0.145 Sum_probs=38.6
Q ss_pred HHHHHHhhhhhhcccchhhHHHHHhh-chhHHHHHHHHHHhccccChhhhhHHhhhhhhhhh
Q psy348 26 FFITNVCNNYAFDFNIAMPLHMIFRA-GSLITNMIMGIIILKKVYTLDKYVSVIMITLGIII 86 (293)
Q Consensus 26 ~~~~~~~~~~~L~y~vs~s~~~~~~~-~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i 86 (293)
|....-.+-+|.+. -|.+---+++= .+....+.++.+++||++++....+.++++.++..
T Consensus 45 Y~l~VPANRiG~~~-~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 45 YCLQVPANRIGYQT-FSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHhCcchhhhccc-cCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 55555555555554 34433223322 34445556888999999999999999988776544
No 116
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=55.92 E-value=56 Score=24.83 Aligned_cols=40 Identities=3% Similarity=-0.029 Sum_probs=33.0
Q ss_pred chhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348 52 GSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS 91 (293)
Q Consensus 52 ~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~ 91 (293)
...+...+..++.-|++|++..+.+..++++|+.++...+
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 3344555678888899999999999999999998887664
No 117
>PHA03049 IMV membrane protein; Provisional
Probab=54.93 E-value=11 Score=25.93 Aligned_cols=18 Identities=11% Similarity=0.287 Sum_probs=14.9
Q ss_pred chhhhhHHHHHHHHHhhh
Q psy348 253 HWTGTALVFVGTVIFTQL 270 (293)
Q Consensus 253 ~~iG~~lv~~Gv~~Y~~~ 270 (293)
..++++.++.|..+|..+
T Consensus 6 ~l~iICVaIi~lIvYgiY 23 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIY 23 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467889999999999865
No 118
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=54.87 E-value=6.1 Score=28.71 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=17.3
Q ss_pred hccccccccccccchhhhhhhccC
Q psy348 270 LVPSLMGMFGEKTKKSKKEKKKTK 293 (293)
Q Consensus 270 ~~~k~~~~~~~~~~~~~~~~~~~~ 293 (293)
...|.+...++..++.|||+||++
T Consensus 62 ~~~k~k~~~~~~~~k~rK~~KKKR 85 (85)
T PF06783_consen 62 VSKKPKAPAPRRLHKPRKEEKKKR 85 (85)
T ss_pred hccCCCCCCcccccccchhhhccC
Confidence 344566666777888888888864
No 119
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=54.50 E-value=4.8 Score=34.09 Aligned_cols=9 Identities=56% Similarity=0.560 Sum_probs=5.3
Q ss_pred hhhhhhccC
Q psy348 285 SKKEKKKTK 293 (293)
Q Consensus 285 ~~~~~~~~~ 293 (293)
.|+|+||+|
T Consensus 188 ~~~~~~k~k 196 (196)
T smart00786 188 QKVETKKKK 196 (196)
T ss_pred ccchhhcCC
Confidence 356666665
No 120
>PRK14405 membrane protein; Provisional
Probab=54.38 E-value=69 Score=27.38 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Q psy348 114 WWSLGITLLTVALFISARMGIYQEVLYKTH 143 (293)
Q Consensus 114 ~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~ 143 (293)
.-..|--..++..+++.+.++..-.+-+..
T Consensus 46 ~R~~G~k~g~~vll~D~lKG~lav~l~~~~ 75 (202)
T PRK14405 46 LRVLGKGPAILVLLLDVVKGIAAVWIGRLL 75 (202)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888888888899998887665444333
No 121
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=52.41 E-value=3.5 Score=27.91 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=17.2
Q ss_pred cccccchhhhhHHHHHHHHHhhh
Q psy348 248 EFTLYHWTGTALVFVGTVIFTQL 270 (293)
Q Consensus 248 ~lt~~~~iG~~lv~~Gv~~Y~~~ 270 (293)
..+....+|..++.+|...|+..
T Consensus 15 R~tV~~Lig~T~~~g~~~~~~~y 37 (59)
T PF14880_consen 15 RTTVLGLIGFTVYGGGLTVYTVY 37 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888743
No 122
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=50.58 E-value=12 Score=30.17 Aligned_cols=17 Identities=35% Similarity=0.182 Sum_probs=8.4
Q ss_pred ccccccccchhhhhhhc
Q psy348 275 MGMFGEKTKKSKKEKKK 291 (293)
Q Consensus 275 ~~~~~~~~~~~~~~~~~ 291 (293)
++.+.|++|+|||-|-|
T Consensus 119 ~~~~~~~~~~~~~~~~~ 135 (141)
T PRK04125 119 KTEKEKEDKKEKKVKIK 135 (141)
T ss_pred hhhhccccchhhhhhcc
Confidence 44455555555554433
No 123
>PRK09336 30S ribosomal protein S30e; Provisional
Probab=50.52 E-value=7.5 Score=25.32 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=12.2
Q ss_pred ccccccccccchhhhhhhcc
Q psy348 273 SLMGMFGEKTKKSKKEKKKT 292 (293)
Q Consensus 273 k~~~~~~~~~~~~~~~~~~~ 292 (293)
+.-+...++.|++|||+||+
T Consensus 9 rAGKVr~qTPkv~k~ekkk~ 28 (50)
T PRK09336 9 KAGKVRSQTPKIPPKPKKNE 28 (50)
T ss_pred hcccccCCCCCcchhhhccC
Confidence 33445566667777776653
No 124
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=50.34 E-value=8.2 Score=29.31 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=23.9
Q ss_pred hhhheeecCcccccchhhhhHHHHHHH
Q psy348 239 LFSIVYFQNEFTLYHWTGTALVFVGTV 265 (293)
Q Consensus 239 ils~~~fge~lt~~~~iG~~lv~~Gv~ 265 (293)
.+++++++|++++.+..|.++++++++
T Consensus 78 ~Fsv~~l~E~l~~n~l~af~~i~~av~ 104 (108)
T PF04342_consen 78 PFSVFYLGEPLKWNYLWAFLCILGAVY 104 (108)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHhhh
Confidence 567789999999999999999988873
No 125
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=49.30 E-value=55 Score=26.05 Aligned_cols=69 Identities=14% Similarity=0.239 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhh-chhHHHHHHHHH----HhccccChhhhhHHhhhhhhhhh
Q psy348 16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRA-GSLITNMIMGII----ILKKVYTLDKYVSVIMITLGIII 86 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~-~~pi~t~l~~~l----~l~~~~~~~~~~~i~l~~~Gv~i 86 (293)
|+.|+ -+++-.....+++..... +.++....+.- ...+.-+++..+ .-+++++.++.++++++++|+.+
T Consensus 65 ~w~~l-GG~lG~~~V~~~~~~vp~-lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 65 WWAYL-GGLLGVFFVLSNIILVPR-LGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hHHhc-cHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 44443 444444445666677775 67766654433 334444445543 34689999999999999999864
No 126
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=48.78 E-value=4 Score=40.80 Aligned_cols=13 Identities=54% Similarity=0.631 Sum_probs=5.9
Q ss_pred ccccchhhhhhhc
Q psy348 279 GEKTKKSKKEKKK 291 (293)
Q Consensus 279 ~~~~~~~~~~~~~ 291 (293)
.++.|++|||+||
T Consensus 64 ~~~~~~~~~~~~~ 76 (615)
T TIGR00990 64 ESKPKISKKERRK 76 (615)
T ss_pred ccCCcchhhHHHH
Confidence 4444444444444
No 127
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=48.13 E-value=13 Score=32.00 Aligned_cols=11 Identities=27% Similarity=0.253 Sum_probs=4.6
Q ss_pred hhhHHHHHHHH
Q psy348 256 GTALVFVGTVI 266 (293)
Q Consensus 256 G~~lv~~Gv~~ 266 (293)
+++||+.-+++
T Consensus 49 tVILVI~i~v~ 59 (221)
T PF08374_consen 49 TVILVIFIVVL 59 (221)
T ss_pred hhHHHHHHHHH
Confidence 34444444433
No 128
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=46.86 E-value=7.1 Score=29.03 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=7.3
Q ss_pred cccccccchhhhhhhc
Q psy348 276 GMFGEKTKKSKKEKKK 291 (293)
Q Consensus 276 ~~~~~~~~~~~~~~~~ 291 (293)
++++++.|++.||.||
T Consensus 47 ~MKEER~K~E~~~q~r 62 (121)
T PF10669_consen 47 RMKEERSKKEEKRQKR 62 (121)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444544444444
No 129
>KOG4112|consensus
Probab=46.40 E-value=9.8 Score=28.16 Aligned_cols=7 Identities=71% Similarity=0.695 Sum_probs=3.9
Q ss_pred hhhhccC
Q psy348 287 KEKKKTK 293 (293)
Q Consensus 287 ~~~~~~~ 293 (293)
|+|||||
T Consensus 95 ~g~kk~k 101 (101)
T KOG4112|consen 95 KGTKKTK 101 (101)
T ss_pred ccccccC
Confidence 4556655
No 130
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.44 E-value=28 Score=26.10 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhccccChhhhhHHhhhhhhhhhee
Q psy348 54 LITNMIMGIIILKKVYTLDKYVSVIMITLGIIICT 88 (293)
Q Consensus 54 pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~ 88 (293)
...-+.++.+.+||.+++..+.+.+++..|+....
T Consensus 80 L~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 80 LAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 34445689999999999999999999888876643
No 131
>PTZ00467 40S ribosomal protein S30; Provisional
Probab=45.38 E-value=10 Score=26.10 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=12.9
Q ss_pred ccccccccccchhhhhhhcc
Q psy348 273 SLMGMFGEKTKKSKKEKKKT 292 (293)
Q Consensus 273 k~~~~~~~~~~~~~~~~~~~ 292 (293)
+.-+...++.|++|||+||+
T Consensus 10 rAGKVr~QTPkv~k~eKkk~ 29 (66)
T PTZ00467 10 RAGKVKNQTPKVAKQEKPKQ 29 (66)
T ss_pred hcccccCCCCCchhhhcccC
Confidence 33455666777777777665
No 132
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=45.34 E-value=17 Score=28.06 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=14.3
Q ss_pred HhhhheeecCcccccchhhhhHHHHH
Q psy348 238 LLFSIVYFQNEFTLYHWTGTALVFVG 263 (293)
Q Consensus 238 ~ils~~~fge~lt~~~~iG~~lv~~G 263 (293)
.+...+=++.+.+....++++..+.=
T Consensus 55 ~vA~~lGi~~~~n~lf~~~i~~ll~~ 80 (115)
T PF10066_consen 55 WVAKLLGIGRPPNLLFYLGILFLLVI 80 (115)
T ss_pred HHHHHHCCCchhHHHHHHHHHHHHHH
Confidence 33344445666666666666554443
No 133
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.00 E-value=25 Score=26.40 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=25.7
Q ss_pred HhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 238 LLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 238 ~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
..+|+++++||+.+.++.|.+++.+|++.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999844
No 134
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=40.25 E-value=3.2e+02 Score=25.66 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=22.7
Q ss_pred HhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhH--HHHHHHH
Q psy348 218 TTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTAL--VFVGTVI 266 (293)
Q Consensus 218 i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~l--v~~Gv~~ 266 (293)
-+-.|+.++++.+.+++- ..++..+++.+++ .+.|+..
T Consensus 140 aSPiSAA~~~~~~~l~~~-----------~gv~~~~iL~V~iPat~ig~~~ 179 (364)
T PF03605_consen 140 ASPISAATVAMIAILAPA-----------HGVSLLQILAVTIPATLIGVLV 179 (364)
T ss_pred cCcHHHHHHHHHHHHccc-----------cCCCHHHHHHhhHHHHHHHHHH
Confidence 344555566666655551 5677777777766 5555544
No 135
>KOG1582|consensus
Probab=39.40 E-value=88 Score=28.27 Aligned_cols=50 Identities=12% Similarity=0.235 Sum_probs=42.0
Q ss_pred hhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348 42 AMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS 91 (293)
Q Consensus 42 s~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~ 91 (293)
.+....++....--.|.++|++++-|.++.....+.++++.|+.+-...+
T Consensus 285 GA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 285 GALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred chhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 34555566666677888999999999999999999999999999977665
No 136
>PRK02237 hypothetical protein; Provisional
Probab=38.03 E-value=50 Score=25.26 Aligned_cols=41 Identities=22% Similarity=0.232 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 226 VTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 226 ~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
.+..+-+--+.+++.++.+-|++++.+-++|.++++.|+.+
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~i 102 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAV 102 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHH
Confidence 45556666677889999999999999999999999999976
No 137
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=37.27 E-value=17 Score=24.28 Aligned_cols=15 Identities=47% Similarity=0.494 Sum_probs=7.7
Q ss_pred ccccccchhhhhhhc
Q psy348 277 MFGEKTKKSKKEKKK 291 (293)
Q Consensus 277 ~~~~~~~~~~~~~~~ 291 (293)
...++..+.|||.||
T Consensus 7 ~~~KET~K~K~ERk~ 21 (56)
T PF15012_consen 7 GKTKETRKQKKERKK 21 (56)
T ss_pred CCccchHHHHHHHHH
Confidence 344445555555554
No 138
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=34.55 E-value=60 Score=24.76 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 226 VTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 226 ~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
.+..+-+--+.+++-++.+-|++++-+-++|.++++.|+.+
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~i 100 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAI 100 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHh
Confidence 44455555677889999999999999999999999999977
No 139
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=34.01 E-value=37 Score=23.30 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=7.0
Q ss_pred HHHHhhhheeecC
Q psy348 235 FVSLLFSIVYFQN 247 (293)
Q Consensus 235 v~t~ils~~~fge 247 (293)
++-.++..++||-
T Consensus 10 liIlvv~LlvfGp 22 (63)
T PRK14859 10 IVILVIVLIVFGA 22 (63)
T ss_pred HHHHHHHHHHhCc
Confidence 4444555666663
No 140
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=33.62 E-value=37 Score=22.61 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=5.6
Q ss_pred hhHHHHHHHHHh
Q psy348 257 TALVFVGTVIFT 268 (293)
Q Consensus 257 ~~lv~~Gv~~Y~ 268 (293)
+.+++.|+++-+
T Consensus 8 IIviVlgvIigN 19 (55)
T PF11446_consen 8 IIVIVLGVIIGN 19 (55)
T ss_pred HHHHHHHHHHhH
Confidence 344455554433
No 141
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=30.59 E-value=1.6e+02 Score=21.91 Aligned_cols=67 Identities=15% Similarity=0.293 Sum_probs=39.9
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHhhhhe---eecC-cccccchhhhhHHHHHHHHHhhhccccccccccccc
Q psy348 216 YLTTECNSLTVTLVITLRKFVSLLFSIV---YFQN-EFTLYHWTGTALVFVGTVIFTQLVPSLMGMFGEKTK 283 (293)
Q Consensus 216 ~~i~~~sa~~~sv~~~l~~v~t~ils~~---~fge-~lt~~~~iG~~lv~~Gv~~Y~~~~~k~~~~~~~~~~ 283 (293)
..++++.-+.......+.-++.+++|.+ +.++ ++-...|.|..--+++.-++-.. -|+.+|.+|++|
T Consensus 23 q~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~-t~r~~~~~e~~~ 93 (93)
T PF06946_consen 23 QAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQF-TNRSKKYGEDDK 93 (93)
T ss_pred HHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHH-HhhhhhcCcCCC
Confidence 4677777555666666666666766554 4444 34455688887777777665433 344444455443
No 142
>PRK14409 membrane protein; Provisional
Probab=30.55 E-value=2.8e+02 Score=23.79 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy348 115 WSLGITLLTVALFISARMGIYQEVLY 140 (293)
Q Consensus 115 ~~~G~~l~l~s~l~~a~~~v~~~~l~ 140 (293)
-..|--..++..+++.+.++..-.+-
T Consensus 45 R~~G~~~g~~vll~D~lKG~lav~la 70 (205)
T PRK14409 45 RVIGWKFGFIVLLLDALKGAVPVYLS 70 (205)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888899998887665443
No 143
>PRK14397 membrane protein; Provisional
Probab=30.29 E-value=2.3e+02 Score=24.61 Aligned_cols=31 Identities=10% Similarity=-0.049 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Q psy348 114 WWSLGITLLTVALFISARMGIYQEVLYKTHG 144 (293)
Q Consensus 114 ~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~ 144 (293)
.-..|--..++..+++.+.++..-.+.+..+
T Consensus 45 ~R~~G~~~gilv~~~D~lKG~lav~l~~~~~ 75 (222)
T PRK14397 45 ARLCGTKWGVLTLVCDVLKGAVPVAVAMSIS 75 (222)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3468888888888999988877655544443
No 144
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=30.26 E-value=2.7e+02 Score=22.48 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=34.0
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348 216 YLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 216 ~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~ 266 (293)
...++.+....++-. +.-..-+++..--.+++.++.|..+++.=..+
T Consensus 67 ~lm~~kgi~rm~lG~----~vm~~~~~llw~ggv~~~~IAg~~lv~filmv 113 (144)
T PF01350_consen 67 FLMRRKGIGRMSLGM----LVMAVAGYLLWMGGVPPGQIAGVLLVFFILMV 113 (144)
T ss_pred hhhcCCCcchhhHHH----HHHHHHHHHHHhcCCcHHHhHHHHHHHHHHHH
Confidence 467788877777766 33444556666678899999999998876644
No 145
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=25.33 E-value=57 Score=25.63 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=10.5
Q ss_pred cccchhhhhHHHHHHHHHhhhccc
Q psy348 250 TLYHWTGTALVFVGTVIFTQLVPS 273 (293)
Q Consensus 250 t~~~~iG~~lv~~Gv~~Y~~~~~k 273 (293)
.+..+++..+.++..+++.+.+.|
T Consensus 96 e~~~~l~~l~~l~~~~~~~~~~~~ 119 (135)
T PF04246_consen 96 ELWAILGGLLGLALGFLILRLFDR 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444443443333
No 146
>PF07771 TSGP1: Tick salivary peptide group 1; InterPro: IPR011694 This entry contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis (Black-legged tick) []. Also present are peptides from a related tick species, Ixodes ricinus (Sheep tick). They are characterised by a putative signal peptide, indicative of secretion, and conserved cysteine residues.
Probab=24.38 E-value=32 Score=26.90 Aligned_cols=7 Identities=43% Similarity=0.487 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy348 118 GITLLTV 124 (293)
Q Consensus 118 G~~l~l~ 124 (293)
+.+++++
T Consensus 5 ~~~~vlv 11 (120)
T PF07771_consen 5 VVTLVLV 11 (120)
T ss_pred eehhhHH
Confidence 3333333
No 147
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.37 E-value=3.1e+02 Score=22.33 Aligned_cols=42 Identities=19% Similarity=0.436 Sum_probs=27.6
Q ss_pred HHhhchhHHHHHHHHHHh----ccccChhhhhHHhhhhhhhhheee
Q psy348 48 IFRAGSLITNMIMGIIIL----KKVYTLDKYVSVIMITLGIIICTI 89 (293)
Q Consensus 48 ~~~~~~pi~t~l~~~l~l----~~~~~~~~~~~i~l~~~Gv~i~~~ 89 (293)
+..+...+.-+++..+=. ++++++.++.+++++++|+.+...
T Consensus 101 l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 101 LVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred HHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 333444444444443322 489999999999999999666543
No 148
>COG1971 Predicted membrane protein [Function unknown]
Probab=24.28 E-value=63 Score=27.35 Aligned_cols=39 Identities=13% Similarity=0.257 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhhheeecCcccccchhhhhH-HHHHHH
Q psy348 227 TLVITLRKFVSLLFSIVYFQNEFTLYHWTGTAL-VFVGTV 265 (293)
Q Consensus 227 sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~l-v~~Gv~ 265 (293)
.++..+.|++....+..+=+-.-.+-+|+|.++ .+.|..
T Consensus 44 G~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~ 83 (190)
T COG1971 44 GVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLK 83 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544444455667666554 677763
No 149
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=23.89 E-value=1.8e+02 Score=24.48 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348 224 LTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT 268 (293)
Q Consensus 224 ~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~ 268 (293)
...++...+-.++..+.-+.++|-+++....+|...+ .|..+..
T Consensus 57 ~~~aii~l~~dv~i~l~~~~~~~~~l~l~~iaall~~-iG~sVd~ 100 (189)
T PF02355_consen 57 ALAAIIALIHDVLITLGIFSLFGIELTLPSIAALLTI-IGYSVDD 100 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-EE-HHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHH-HHHHHhc
Confidence 4445555666666666677888889999999888554 4544444
No 150
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=23.10 E-value=45 Score=29.76 Aligned_cols=44 Identities=7% Similarity=0.144 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHhhhheeecC-----cccccchhhhhHHHHHHHHH
Q psy348 224 LTVTLVITLRKFVSLLFSIVYFQN-----EFTLYHWTGTALVFVGTVIF 267 (293)
Q Consensus 224 ~~~sv~~~l~~v~t~ils~~~fge-----~lt~~~~iG~~lv~~Gv~~Y 267 (293)
....+...+-.+.=.++-.+=-++ .+|..|+++..+++.|+.++
T Consensus 205 ~~f~~yl~~Y~~~Rf~iEf~R~~~~~~~~~ls~~Q~~sl~~i~~g~~~~ 253 (269)
T PRK12437 205 EVFALYLIWYSIGRFFIEGLRTDSLMLFGWLRIAQVISIPLIIIGIILI 253 (269)
T ss_pred hhHHHHHHHHHHHHHhhhhhccCchhhhcChhHHHHHHHHHHHHHHHHH
Confidence 344455554444444444432222 37899999999999998664
No 151
>PRK11562 nitrite transporter NirC; Provisional
Probab=22.87 E-value=47 Score=29.77 Aligned_cols=39 Identities=13% Similarity=-0.089 Sum_probs=28.5
Q ss_pred cccccchhhhhHHHHHHHHHhhhccccccccccccchhhhhhh
Q psy348 248 EFTLYHWTGTALVFVGTVIFTQLVPSLMGMFGEKTKKSKKEKK 290 (293)
Q Consensus 248 ~lt~~~~iG~~lv~~Gv~~Y~~~~~k~~~~~~~~~~~~~~~~~ 290 (293)
|.+..+++|..+.++..++|. .++++++++.|-++.||.
T Consensus 228 pvtLGNivGG~v~vg~~y~~~----~~~~~~~~~~~~~~~~~~ 266 (268)
T PRK11562 228 WVTLGNTLSGAVFMGLGYWYA----TPKANRPVAAKFNQTETA 266 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hCCCcCchhhhHhhhhhc
Confidence 678889999998877776654 346666777777777764
No 152
>PF04758 Ribosomal_S30: Ribosomal protein S30; InterPro: IPR006846 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry is for the ribosomal protein S30.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_X 2XZM_X 3IZB_Z 3U5G_e 3U5C_e 3J16_E 3IZ6_Z.
Probab=22.56 E-value=20 Score=24.22 Aligned_cols=17 Identities=41% Similarity=0.501 Sum_probs=10.1
Q ss_pred cccccccchhhhhhhcc
Q psy348 276 GMFGEKTKKSKKEKKKT 292 (293)
Q Consensus 276 ~~~~~~~~~~~~~~~~~ 292 (293)
+-..++-|++|+|++|.
T Consensus 11 KVR~QTPKV~k~~k~k~ 27 (59)
T PF04758_consen 11 KVRGQTPKVEKQEKKKK 27 (59)
T ss_dssp HHHHHSSSSS--HHHHH
T ss_pred cccccCCCcCccccccC
Confidence 34467778888887763
No 153
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=22.25 E-value=1.1e+02 Score=29.89 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHH
Q psy348 16 NQHQIELVVMFFI 28 (293)
Q Consensus 16 ~~~~~~~~~~~~~ 28 (293)
+++.+++++++++
T Consensus 23 ~~k~~~l~~m~f~ 35 (491)
T PF03219_consen 23 LKKFLPLALMFFF 35 (491)
T ss_pred HHHHHHHHHHHHH
Confidence 8889999887554
No 154
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.88 E-value=94 Score=28.45 Aligned_cols=51 Identities=2% Similarity=-0.052 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHhhhccccccc
Q psy348 226 VTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQLVPSLMGM 277 (293)
Q Consensus 226 ~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~~~~~k~~~~ 277 (293)
..+....-|+...++|+-.-..-+.....+|..-.+.|+ +|.....++++.
T Consensus 102 ~~~~~f~~Pv~lpiLG~~~GliYv~i~~~va~~~tlig~-l~g~~~l~~~~~ 152 (311)
T COG3366 102 RHAFTFYAPVALPILGLELGLIYVGIRVLVALLKTLIGV-LYGKISLKNDDI 152 (311)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCCc
Confidence 334555667777777766666666677778888888887 666554444433
No 155
>PF04647 AgrB: Accessory gene regulator B; InterPro: IPR006741 The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein [] involved in the proteolytic processing of AgrD, and may have both proteolytic and transporter activities, facilitating the export of the processed AgrD peptide []. ; GO: 0016020 membrane
Probab=21.84 E-value=2.1e+02 Score=23.51 Aligned_cols=7 Identities=0% Similarity=-0.059 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy348 225 TVTLVIT 231 (293)
Q Consensus 225 ~~sv~~~ 231 (293)
...+.+.
T Consensus 78 ~C~i~s~ 84 (185)
T PF04647_consen 78 RCFIFSV 84 (185)
T ss_pred HHHHHHH
Confidence 3444443
No 156
>PRK01821 hypothetical protein; Provisional
Probab=21.82 E-value=65 Score=25.61 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=5.3
Q ss_pred ccccccccccccch
Q psy348 271 VPSLMGMFGEKTKK 284 (293)
Q Consensus 271 ~~k~~~~~~~~~~~ 284 (293)
..++++.-.+++||
T Consensus 118 l~~~~~~~~~~~~~ 131 (133)
T PRK01821 118 VHGERKVIGQKGKE 131 (133)
T ss_pred HHhhhhccCCCCcc
Confidence 33433333333333
No 157
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=21.76 E-value=1.7e+02 Score=26.47 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=31.0
Q ss_pred cchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348 221 CNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT 268 (293)
Q Consensus 221 ~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~ 268 (293)
.......+....-.++..+....++|-+++...++|...+ .|..+..
T Consensus 150 ~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~~siaall~l-iG~sVnd 196 (289)
T PRK13022 150 WRFALGAIIALLHDVIITLGIFSLFQIEFDLTVIAALLTI-IGYSLND 196 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHH-HHHheec
Confidence 3344455555555666667777888999998888776655 6655543
No 158
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=21.60 E-value=65 Score=23.47 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.2
Q ss_pred cccccchhhhhHHHHHHHHHhh
Q psy348 248 EFTLYHWTGTALVFVGTVIFTQ 269 (293)
Q Consensus 248 ~lt~~~~iG~~lv~~Gv~~Y~~ 269 (293)
.+++...+|+.++++|..+|..
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~l 25 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFL 25 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999863
No 159
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=21.56 E-value=1.7e+02 Score=24.62 Aligned_cols=35 Identities=20% Similarity=0.089 Sum_probs=24.8
Q ss_pred HHHHhhhheeecCcccccchhhhhHHHHHHHHHhh
Q psy348 235 FVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQ 269 (293)
Q Consensus 235 v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~~ 269 (293)
++..+.-..++|-+++.....|..++++=.+=++.
T Consensus 84 i~~t~g~m~l~G~~ln~~s~~glil~iGi~Vd~aI 118 (192)
T TIGR00916 84 VILILGVLSLFGATLTLPGIAGLLTIIGYSVDDTV 118 (192)
T ss_pred HHHHHHHHHHHCCcccHHHHHHHHHHHHHhhcCeE
Confidence 44455556678889999999998887655544443
No 160
>PHA02828 putative transmembrane protein; Provisional
Probab=20.97 E-value=44 Score=24.56 Aligned_cols=7 Identities=57% Similarity=0.605 Sum_probs=3.3
Q ss_pred cchhhhh
Q psy348 282 TKKSKKE 288 (293)
Q Consensus 282 ~~~~~~~ 288 (293)
.||||||
T Consensus 75 ~KEE~Kk 81 (100)
T PHA02828 75 YKEEKKE 81 (100)
T ss_pred ccccccc
Confidence 3445444
No 161
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=20.45 E-value=1.1e+02 Score=29.71 Aligned_cols=33 Identities=12% Similarity=0.074 Sum_probs=23.7
Q ss_pred CcccccchhhhhHHHHHHHHHhhhccccccccc
Q psy348 247 NEFTLYHWTGTALVFVGTVIFTQLVPSLMGMFG 279 (293)
Q Consensus 247 e~lt~~~~iG~~lv~~Gv~~Y~~~~~k~~~~~~ 279 (293)
+.-..++..+..+.+.|+...-..+..-||+-.
T Consensus 180 ~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~ 212 (467)
T COG2211 180 DKALGYQGTALVLGVIGVILLLFCFFNVKERVV 212 (467)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 347778888888888888776666666666654
No 162
>PHA02898 virion envelope protein; Provisional
Probab=20.31 E-value=3.1e+02 Score=20.14 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=34.7
Q ss_pred HhccccChhhhhHHhhhhhhhhheeeccCccccccCCCccccccccchhhHHHHHHHHHHHHHHH
Q psy348 64 ILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFI 128 (293)
Q Consensus 64 ~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~ 128 (293)
+++-+++--.+.|+++.++-+++...+-..+.+ .++..|..+.+..+++..++.
T Consensus 6 ~~~N~~s~vli~GIiLL~~ACIfAfidfSK~~~-----------~~~~~wRalSii~FIlgivl~ 59 (92)
T PHA02898 6 FFKNRPSYVVAFGIILLIVACICAYIELSKSEK-----------PADSALRSISIISFILAIILI 59 (92)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHheehhhcCCC-----------cchhHHHHHHHHHHHHHHHHH
Confidence 567888888999999999888887665332211 112346666666666655444
No 163
>PRK01637 hypothetical protein; Reviewed
Probab=20.18 E-value=3.7e+02 Score=23.95 Aligned_cols=37 Identities=8% Similarity=0.056 Sum_probs=17.0
Q ss_pred chhhhhHHHHHHHHHhhhccccccccccccchhhhhhhc
Q psy348 253 HWTGTALVFVGTVIFTQLVPSLMGMFGEKTKKSKKEKKK 291 (293)
Q Consensus 253 ~~iG~~lv~~Gv~~Y~~~~~k~~~~~~~~~~~~~~~~~~ 291 (293)
.+.+.++.+++.+- ....+.++.++.-+.||..|.||
T Consensus 250 yl~~~ilL~Gaeln--a~~~~~~~~~~~~~~~~~~~~~~ 286 (286)
T PRK01637 250 YLSWCIVLLGAEIT--ATLGEYRKLKQAAEQEEDDEPKK 286 (286)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHhcccccccccccCC
Confidence 34444444444433 33334444444444455556665
No 164
>PRK02463 OxaA-like protein precursor; Provisional
Probab=20.01 E-value=5.8e+02 Score=23.33 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=12.3
Q ss_pred cccccchhhhhHHHHHHHHHh
Q psy348 248 EFTLYHWTGTALVFVGTVIFT 268 (293)
Q Consensus 248 ~lt~~~~iG~~lv~~Gv~~Y~ 268 (293)
-+..+..+|.++.++=.++.+
T Consensus 228 gL~lYW~~snlfsi~Q~~i~~ 248 (307)
T PRK02463 228 GVGLYWLVGGFFSIIQQLITT 248 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666555554544
Done!