Query psy348
Match_columns 293
No_of_seqs 117 out of 1149
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 17:48:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.6 5.6E-08 1.9E-12 76.9 5.7 60 209-268 42-102 (137)
2 3b5d_A Multidrug transporter E 98.3 2E-06 7E-11 65.4 7.1 72 19-91 33-105 (110)
3 2i68_A Protein EMRE; transmemb 98.1 1.6E-06 5.5E-11 68.5 3.9 71 20-91 34-105 (137)
4 3b5d_A Multidrug transporter E 97.9 2.6E-05 9E-10 59.2 7.5 60 209-268 42-102 (110)
5 3j01_B Preprotein translocase 47.3 8.5 0.00029 28.8 1.8 20 272-291 51-70 (116)
6 3iz6_Z 40S ribosomal protein S 44.9 3.4 0.00012 27.1 -0.6 17 276-292 13-29 (62)
7 3l1l_A Arginine/agmatine antip 39.3 39 0.0013 30.3 5.5 22 252-273 409-430 (445)
8 3u5c_e 40S ribosomal protein S 38.8 4.4 0.00015 26.7 -0.8 17 276-292 13-29 (63)
9 4h33_A LMO2059 protein; bilaye 26.4 1.4E+02 0.0049 22.3 5.9 27 244-270 59-88 (137)
10 2xzm_X RPS30E; ribosome, trans 23.6 10 0.00035 26.2 -1.1 18 273-290 10-27 (80)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.59 E-value=5.6e-08 Score=76.94 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhcchhHHHHH-HHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348 209 LCISSVYYLTTECNSLTVTLV-ITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT 268 (293)
Q Consensus 209 l~~~~~~~~i~~~sa~~~sv~-~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~ 268 (293)
++...+..++++.++..+..+ ..+.|+++.++|+++|||++|+.+++|+++++.|+++.+
T Consensus 42 ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~ 102 (137)
T 2i68_A 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (137)
T ss_dssp HHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 444566678999999998888 899999999999999999999999999999999998755
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.26 E-value=2e-06 Score=65.39 Aligned_cols=72 Identities=8% Similarity=0.225 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhhhhhhcccchhhHHHHH-hhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348 19 QIELVVMFFITNVCNNYAFDFNIAMPLHMIF-RAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS 91 (293)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~-~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~ 91 (293)
.+...+++..+..+...++++ +|.+..-.+ +++.|+.+.+++++++||++++.+++++.++++|+.+....+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~-~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAY-IPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344455688889999999998 999998655 899999999999999999999999999999999999987654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.12 E-value=1.6e-06 Score=68.52 Aligned_cols=71 Identities=8% Similarity=0.228 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhhhhhcccchhhHHHHH-hhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348 20 IELVVMFFITNVCNNYAFDFNIAMPLHMIF-RAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS 91 (293)
Q Consensus 20 ~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~-~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~ 91 (293)
+...+++.++.++.+.++++ ++.+....+ .++.|++++++++++++|+++..+++|++++++|+.+....+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~-i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAY-IPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44455688889999999998 999977655 999999999999999999999999999999999999987544
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.94 E-value=2.6e-05 Score=59.17 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhcchhHHHHH-HHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348 209 LCISSVYYLTTECNSLTVTLV-ITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT 268 (293)
Q Consensus 209 l~~~~~~~~i~~~sa~~~sv~-~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~ 268 (293)
++...+...+++.+..++... ..+.|+.+.++|+++|||++|+.+++|+++++.|++..+
T Consensus 42 ~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 333455568999999998777 899999999999999999999999999999999997744
No 5
>3j01_B Preprotein translocase SECE subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Z 2aki_Z
Probab=47.28 E-value=8.5 Score=28.79 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=14.3
Q ss_pred cccccccccccchhhhhhhc
Q psy348 272 PSLMGMFGEKTKKSKKEKKK 291 (293)
Q Consensus 272 ~k~~~~~~~~~~~~~~~~~~ 291 (293)
.++.++..+--|+.++|-||
T Consensus 51 t~~g~~~~~F~kev~~ElkK 70 (116)
T 3j01_B 51 TTKGKATVAFAREARTEVRK 70 (116)
T ss_dssp HTTTSCTTTCSSSHHHHHHH
T ss_pred ccccchHHHHHHHHHHHhhe
Confidence 35566677777888888776
No 6
>3iz6_Z 40S ribosomal protein S30 (S30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=44.86 E-value=3.4 Score=27.08 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=10.8
Q ss_pred cccccccchhhhhhhcc
Q psy348 276 GMFGEKTKKSKKEKKKT 292 (293)
Q Consensus 276 ~~~~~~~~~~~~~~~~~ 292 (293)
+...|+-|++|||+||+
T Consensus 13 KVR~QTPKV~kqeKkk~ 29 (62)
T 3iz6_Z 13 KVRGQTPKVAKQDKKKK 29 (62)
T ss_dssp TTCCCCSSSSCCHHHHH
T ss_pred cccCCCCCcchhhhccC
Confidence 45566677777776653
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=39.27 E-value=39 Score=30.32 Aligned_cols=22 Identities=9% Similarity=-0.087 Sum_probs=15.6
Q ss_pred cchhhhhHHHHHHHHHhhhccc
Q psy348 252 YHWTGTALVFVGTVIFTQLVPS 273 (293)
Q Consensus 252 ~~~iG~~lv~~Gv~~Y~~~~~k 273 (293)
....|..+++.|+.+|.....+
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3456888889999888765333
No 8
>3u5c_e 40S ribosomal protein S30-A, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Z* 3j16_E 3u5g_e
Probab=38.84 E-value=4.4 Score=26.71 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=10.9
Q ss_pred cccccccchhhhhhhcc
Q psy348 276 GMFGEKTKKSKKEKKKT 292 (293)
Q Consensus 276 ~~~~~~~~~~~~~~~~~ 292 (293)
+...++-|++|||+||+
T Consensus 13 KVR~QTPKV~k~eKkk~ 29 (63)
T 3u5c_e 13 KVKSQTPKVEKTEKPKK 29 (63)
T ss_dssp HHHHHSCCCCCCCCCCC
T ss_pred cccCCCCCCcccccccC
Confidence 34556677777777664
No 9
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=26.38 E-value=1.4e+02 Score=22.30 Aligned_cols=27 Identities=7% Similarity=0.151 Sum_probs=15.9
Q ss_pred eecC--cccc-cchhhhhHHHHHHHHHhhh
Q psy348 244 YFQN--EFTL-YHWTGTALVFVGTVIFTQL 270 (293)
Q Consensus 244 ~fge--~lt~-~~~iG~~lv~~Gv~~Y~~~ 270 (293)
=+|| |.|. ..+.++..++.|+.+++..
T Consensus 59 GyGDi~P~t~~gr~~~~~~~~~g~~~~~~~ 88 (137)
T 4h33_A 59 GYGDIVPVTPIGRILASIMMLFGIAFIGMI 88 (137)
T ss_dssp CCSSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHhHHHHHHHHHHHHHHHHHHH
Confidence 3555 4443 3566677777777766543
No 10
>2xzm_X RPS30E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_X 3j0o_X 3j0l_X 3j0p_X 3j0q_X
Probab=23.55 E-value=10 Score=26.22 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=12.2
Q ss_pred ccccccccccchhhhhhh
Q psy348 273 SLMGMFGEKTKKSKKEKK 290 (293)
Q Consensus 273 k~~~~~~~~~~~~~~~~~ 290 (293)
+--+...++-|++|||+|
T Consensus 10 rAGKVR~QTPKV~kqeKk 27 (80)
T 2xzm_X 10 KAGKVRKQTPKVEKKDKP 27 (80)
T ss_dssp TTTHHHHHSCCCCCCCCS
T ss_pred ccccccccCCCcchhhhc
Confidence 444556677778877776
Done!