Query psy348
Match_columns 293
No_of_seqs 117 out of 1149
Neff 8.3
Searched_HMMs 13730
Date Fri Aug 16 17:48:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy348.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/348hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga7 f.35.1.1 (A:7-37,A:331 59.0 3.3 0.00024 31.9 3.4 57 218-274 60-116 (199)
2 d1iwga8 f.35.1.1 (A:513-566,A: 37.0 22 0.0016 27.4 5.1 36 235-270 95-130 (222)
3 d1r3jc_ f.14.1.1 (C:) Potassiu 14.6 1.1E+02 0.0083 19.7 4.6 30 243-272 55-87 (103)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 9.6 3.4E+02 0.024 20.7 6.6 54 18-76 4-57 (248)
5 d1o82a_ a.64.2.1 (A:) Bacterio 5.8 37 0.0027 20.2 -0.9 19 273-291 46-64 (70)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 5.6 85 0.0062 20.2 0.7 15 256-270 27-41 (91)
7 d1kqfb2 f.23.22.1 (B:246-290) 3.8 1.7E+02 0.012 16.3 1.1 21 246-266 9-29 (45)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.4 3.5E+02 0.026 17.4 2.8 15 256-270 44-58 (107)
9 d2e74g1 f.23.26.1 (G:9-35) Pet 3.2 3.2E+02 0.023 12.9 2.9 17 116-132 2-18 (27)
10 d1oisa_ e.15.1.1 (A:) Eukaryot 3.0 1.5E+02 0.011 22.6 0.3 26 266-291 100-125 (223)
No 1
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=59.01 E-value=3.3 Score=31.94 Aligned_cols=57 Identities=9% Similarity=-0.030 Sum_probs=41.0
Q ss_pred HhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHhhhcccc
Q psy348 218 TTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQLVPSL 274 (293)
Q Consensus 218 i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~~~~~k~ 274 (293)
.+..-+.........-.+...+....++|.+++.....+..+.++..+-|+.+...+
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~~i~i~~~ 116 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVEN 116 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 454555555555555566667777888999999999999999888888777554433
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=36.96 E-value=22 Score=27.37 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=26.4
Q ss_pred HHHHhhhheeecCcccccchhhhhHHHHHHHHHhhh
Q psy348 235 FVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQL 270 (293)
Q Consensus 235 v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~~~ 270 (293)
+...+.+..++|.+++....+|..+.++...-++..
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v~~~i~ 130 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAIL 130 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhhhhhHHHH
Confidence 345566777888999999999888876666555543
No 3
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=14.64 E-value=1.1e+02 Score=19.71 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=19.5
Q ss_pred eeecC--cccc-cchhhhhHHHHHHHHHhhhcc
Q psy348 243 VYFQN--EFTL-YHWTGTALVFVGTVIFTQLVP 272 (293)
Q Consensus 243 ~~fge--~lt~-~~~iG~~lv~~Gv~~Y~~~~~ 272 (293)
+=+|| |.|. .++++....+.|+.++.....
T Consensus 55 vGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~ 87 (103)
T d1r3jc_ 55 VGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTA 87 (103)
T ss_dssp CCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 34466 3343 367788888888888775543
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=9.64 E-value=3.4e+02 Score=20.67 Aligned_cols=54 Identities=11% Similarity=-0.025 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhH
Q psy348 18 HQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVS 76 (293)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~ 76 (293)
++++++++......+-...+.. =+.....+ ..+.+.++.++++.+|.-..+++-
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~-~~~~~a~~----~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQ-GEYLFAIT----TLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGG-GCHHHHHH----HHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-chHHHHHH----HHHHHHheEEEEEccCccceehhh
Confidence 4666777666555554444443 23333332 366777788888888877777653
No 5
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=5.82 E-value=37 Score=20.23 Aligned_cols=19 Identities=26% Similarity=0.064 Sum_probs=11.9
Q ss_pred ccccccccccchhhhhhhc
Q psy348 273 SLMGMFGEKTKKSKKEKKK 291 (293)
Q Consensus 273 k~~~~~~~~~~~~~~~~~~ 291 (293)
--|+..++..|++-|||-|
T Consensus 46 ag~e~i~~~lkk~i~~kgk 64 (70)
T d1o82a_ 46 AGRESIKAYLKKEIKKKGK 64 (70)
T ss_dssp TTTSCHHHHHHHHHHHHCH
T ss_pred hcHHHHHHHHHHHHHHhCc
Confidence 3466667777766666554
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.56 E-value=85 Score=20.17 Aligned_cols=15 Identities=0% Similarity=-0.279 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHhhh
Q psy348 256 GTALVFVGTVIFTQL 270 (293)
Q Consensus 256 G~~lv~~Gv~~Y~~~ 270 (293)
.+.+.+.|.++|...
T Consensus 27 iv~v~V~~~~~~~~~ 41 (91)
T d1fftb2 27 IVVIPAILMAVGFAW 41 (91)
T ss_dssp TTTTHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhhe
Confidence 345566777777755
No 7
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=3.80 E-value=1.7e+02 Score=16.27 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=13.8
Q ss_pred cCcccccchhhhhHHHHHHHH
Q psy348 246 QNEFTLYHWTGTALVFVGTVI 266 (293)
Q Consensus 246 ge~lt~~~~iG~~lv~~Gv~~ 266 (293)
.+.+-+...+|+.....+.++
T Consensus 9 Kgv~Kpl~~~~~~~~~~~~~f 29 (45)
T d1kqfb2 9 KGALKPLAAAGFIATFAGLIF 29 (45)
T ss_dssp HTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777654
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.44 E-value=3.5e+02 Score=17.38 Aligned_cols=15 Identities=0% Similarity=0.078 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHhhh
Q psy348 256 GTALVFVGTVIFTQL 270 (293)
Q Consensus 256 G~~lv~~Gv~~Y~~~ 270 (293)
++.+.+.|+++|...
T Consensus 44 ~I~~~V~~~~~~~~~ 58 (107)
T d3ehbb2 44 AVTIFVCLLLLICIV 58 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 334446667777654
No 9
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.21 E-value=3.2e+02 Score=12.90 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhH
Q psy348 116 SLGITLLTVALFISARM 132 (293)
Q Consensus 116 ~~G~~l~l~s~l~~a~~ 132 (293)
.+|.+..-++-+++|.|
T Consensus 2 vlgli~~tl~glf~aay 18 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHH
Confidence 45666666666665544
No 10
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.00 E-value=1.5e+02 Score=22.58 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHhhhccccccccccccchhhhhhhc
Q psy348 266 IFTQLVPSLMGMFGEKTKKSKKEKKK 291 (293)
Q Consensus 266 ~Y~~~~~k~~~~~~~~~~~~~~~~~~ 291 (293)
.+-....+++++..+++|..|+|+.|
T Consensus 100 ~~~~~kE~kk~~tkEEKk~~K~~k~~ 125 (223)
T d1oisa_ 100 YFQLQKEQKKQLTSQEKKQIRLEREK 125 (223)
T ss_dssp HHHHHHHHHTTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Done!