RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy348
(293 letters)
>gnl|CDD|219846 pfam08449, UAA, UAA transporter family. This family includes
transporters with a specificity for
UDP-N-acetylglucosamine.
Length = 303
Score = 232 bits (595), Expect = 1e-75
Identities = 99/247 (40%), Positives = 144/247 (58%), Gaps = 20/247 (8%)
Query: 22 LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMIT 81
+V FF+++V NN A + I+ P H+IF++ LI MI+GI+I K Y+ +Y+S ++IT
Sbjct: 70 IVATFFLSSVLNNEALKY-ISYPTHVIFKSCKLIPVMILGILIYGKRYSSLQYLSALLIT 128
Query: 82 LGIIICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYK 141
LG+II T+ S+++ K + F ++GI LL AL + A G QE LYK
Sbjct: 129 LGVIIFTLASAKDSK----------NSKLTTFSDNVGIALLFGALLMDALTGNTQEKLYK 178
Query: 142 THGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLL 201
+GK+ E ++Y+HLL LP F ++ L + + PS++FYLL
Sbjct: 179 KYGKHSKEMMFYSHLLSLPFFLLGLLDIRTGLL---------FSAESFCLRHPSVLFYLL 229
Query: 202 GNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVF 261
N LTQY+ V+YL +E +LTVTLV TLRKFVSLL S++ F N TL W GT LVF
Sbjct: 230 LNSLTQYVGQFFVFYLISEFGALTVTLVTTLRKFVSLLLSVLLFGNPLTLQQWLGTLLVF 289
Query: 262 VGTVIFT 268
+G ++
Sbjct: 290 LGIFLYA 296
>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter. The 10-12 TMS
Nucleotide Sugar Transporters (TC
2.A.7.10)Nucleotide-sugar transporters (NSTs) are found
in the Golgi apparatus and the endoplasmic reticulum of
eukaryotic cells. Members of the family have been
sequenced from yeast, protozoans and animals. Animals
such as C. elegans possess many of these transporters.
Humans have at least two closely related isoforms of the
UDP-galactose:UMP exchange transporter.NSTs generally
appear to function by antiport mechanisms, exchanging a
nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid
is exchanged for CMP; GDP-mannose is preferentially
exchanged for GMP, and UDP-galactose and
UDP-N-acetylglucosamine are exchanged for UMP (or
possibly UDP). Other nucleotide sugars (e.g.,
GDP-fucose, UDP-xylose, UDP-glucose,
UDP-N-acetylgalactosamine, etc.) may also be transported
in exchange for various nucleotides, but their
transporters have not been molecularly characterized.
Each compound appears to be translocated by its own
transport protein. Transport allows the compound,
synthesized in the cytoplasm, to be exported to the
lumen of the Golgi apparatus or the endoplasmic
reticulum where it is used for the synthesis of
glycoproteins and glycolipids.
Length = 222
Score = 55.1 bits (133), Expect = 5e-09
Identities = 46/232 (19%), Positives = 95/232 (40%), Gaps = 14/232 (6%)
Query: 40 NIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIK--- 96
+++P+H+IF+ +L+ + ++ K T K +S ++TLG ++ ++ Q
Sbjct: 1 KLSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKL 60
Query: 97 -KYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTH 155
K GV+ + + S G ++ ++ +SA + +Y + ++++
Sbjct: 61 LKLGVAIVQMVQSSAKTL--MFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSR 118
Query: 156 LLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVY 215
L LP F W + FI P+ V+ + + LCI V
Sbjct: 119 NLQLPLFGLFSTFSVLLWSDGTLISNFGF-----FIGYPTAVWIVGLLNVGGGLCIGGVV 173
Query: 216 YLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIF 267
++ T + V L +S L S+ F + + + G LVF+ T ++
Sbjct: 174 RYA---DNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222
>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family. This family
includes transporters with a specificity for triose
phosphate.
Length = 149
Score = 39.1 bits (92), Expect = 6e-04
Identities = 17/81 (20%), Positives = 39/81 (48%)
Query: 189 SFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNE 248
+ V LL + + +L S + L + LT ++ T+++ V ++ S++ F +
Sbjct: 69 GDLKTSRYVLLLLLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVIVLSVIIFGDP 128
Query: 249 FTLYHWTGTALVFVGTVIFTQ 269
T + G A+ +G V+++
Sbjct: 129 VTFLNILGLAIAILGVVLYSY 149
>gnl|CDD|240371 PTZ00343, PTZ00343, triose or hexose phosphate/phosphate
translocator; Provisional.
Length = 350
Score = 37.4 bits (87), Expect = 0.007
Identities = 46/225 (20%), Positives = 95/225 (42%), Gaps = 26/225 (11%)
Query: 48 IFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYGVSDEEQLS 107
+ +A + ++ I+ LK+ L Y+S+I I G+ + ++ ++L
Sbjct: 145 VVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV--------------KELH 190
Query: 108 YSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYT---HLLPLP-AFA 163
++ FW ++ L + I A+ + + + + T L+ LP
Sbjct: 191 FTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLF 250
Query: 164 FLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNS 223
F K W N T + +Y I I+F + + + YL +Y + N
Sbjct: 251 FEGKKWVPVWT---NYT-ANMTNYTKGI----IIFKIFFSGVWYYLYNEVAFYCLGKVNQ 302
Query: 224 LTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT 268
+T + TL++ V ++ SI+ FQ + TL + G A+ +G ++++
Sbjct: 303 VTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347
>gnl|CDD|216606 pfam01616, Orbi_NS3, Orbivirus NS3. The function of this Orbivirus
non structural protein is uncertain. However it may play
a role on release of the virus from infected cells.
Length = 194
Score = 30.4 bits (69), Expect = 0.71
Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 65 LKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGIT---- 120
LK+ Y L + + +I + ++ +M++ E+ E + W S+ +
Sbjct: 85 LKRKYRLLRTIELIAAVVALVTSFVMAASEV------SPELKHWLREKGWVSITLHVVNL 138
Query: 121 LLTVALFISARM 132
T L ++++
Sbjct: 139 GATTLLLFASKI 150
>gnl|CDD|222752 pfam14435, SUKH-4, SUKH-4 immunity protein. This family belongs to
the SUKH superfamily and functions as immunity proteins
in bacterial toxin systems.
Length = 179
Score = 29.3 bits (66), Expect = 1.6
Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 15/110 (13%)
Query: 155 HLLPLPAFAFLYKNLYEHW---LIAVNSTPLPLPSYLSFISIPSIV-------FYLLGNV 204
LL L FL + + P L+ + + + +LG+
Sbjct: 25 ALLHLETRRFLTEVGLPKDGPPFFTFDPDHAPPLPTLAELFDELLPLPAGAGEYIVLGDT 84
Query: 205 LT-QYLCISS----VYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEF 249
+ Y+C+ VY L+ V + +L F L+ ++ E
Sbjct: 85 GSGGYICLDEATGRVYLLSPGDEPEVVFVNSSLSSFAEFLYLLLEAIEEL 134
>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This
family consists of several fungal specific trichothecene
efflux pump proteins. Many of the genes involved in
trichothecene toxin biosynthesis in Fusarium
sporotrichioides are present within a gene cluster.It
has been suggested that TRI12 may play a role in F.
sporotrichioides self-protection against trichothecenes.
Length = 598
Score = 30.0 bits (67), Expect = 1.6
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 188 LSFISIPSIVFYLLGNVLTQYLCISS----VYYLTTECNSLTVTLVITLR---KFVSLLF 240
L +S P+I G Q L I ++Y+ +++ V L+I F L
Sbjct: 168 LLIVSAPTIAMNGAGPYFGQRLAIQGNWRWIFYIYIIMSAIAVLLIIIWYHPPSFAQLHG 227
Query: 241 SIVYFQNEFTLYHWTGTALVFVGTVIF 267
++E W G LV GT +F
Sbjct: 228 KKARKRDELAKLDWIGIFLVIAGTSLF 254
>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family. This family
includes many hypothetical membrane proteins of unknown
function. Many of the proteins contain two copies of the
aligned region. The family used to be known as DUF6.
Length = 126
Score = 28.4 bits (64), Expect = 2.0
Identities = 13/81 (16%), Positives = 35/81 (43%)
Query: 188 LSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQN 247
+ +S+ +I+ L + L +Y ++ +++ +L +L+ S++
Sbjct: 45 FALLSLKAILALLYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGE 104
Query: 248 EFTLYHWTGTALVFVGTVIFT 268
+ TL G L+ +G ++
Sbjct: 105 KLTLKQLLGIVLILLGVLLIL 125
>gnl|CDD|212033 cd10323, SLC-NCS1sbd, nucleobase-cation-symport-1 (NCS1)
transporters; solute-binding domain. NCS1s are
essential components of salvage pathways for nucleobases
and related metabolites; their known substrates include
allantoin, uracil, thiamine, and nicotinamide riboside.
This family includes Microbacterium liquefaciens Mhp1, a
transporter that mediates the uptake of indolyl methyl-
and benzyl-hydantoins as part of a metabolic salvage
pathway for their conversion to amino acids. It also
includes various Saccharomyces cerevisiae transporters:
Fcy21p (Purine-cytosine permease), vitamin B6
transporter Tpn1, nicotinamide riboside transporter 1
(Nrt1p, also called Thi71p), Dal4p (allantoin permease),
Fui1p (uridine permease), and Fur4p (uracil permease).
Mhp1 has 12 transmembrane (TM) helices (an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs11-12; TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). NCS1s belong to a superfamily
which also contains the solute carrier 5 family
sodium/glucose transporters (SLC5s), and SLC6
neurotransmitter transporters.
Length = 453
Score = 29.4 bits (66), Expect = 2.6
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 19/102 (18%)
Query: 3 KLDSLPVIIPRHINQHQIELVVMFFI------TNVCNNY---AFDFNIAMPLHMIFRAGS 53
K + PV I + ++ L+ TN+ N A+D P + F+ G
Sbjct: 276 KAEWNPVDIVQEVDSIFAALLAQVVFLLATWSTNIAANLLSPAYDLCATFPRVITFKTGV 335
Query: 54 LITNMIMGIIIL---------KKVYTLDKYVSVIMITLGIII 86
LI ++G++I LD + + G++I
Sbjct: 336 LI-AAVIGLLICPWNLMNNLNVIHTFLDLLAAALGPLAGVMI 376
>gnl|CDD|212093 cd11555, SLC-NCS1sbd_u1, uncharacterized
nucleobase-cation-symport-1 (NCS1) transporter
subfamily; solute-binding domain. NCS1s are essential
components of salvage pathways for nucleobases and
related metabolites; their known substrates include
allantoin, uracil, thiamine, and nicotinamide riboside.
NCS1s belong to a superfamily which also contains the
solute carrier 5 family sodium/glucose transporters
(SLC5s), and solute carrier 6 family neurotransmitter
transporters (SLC6s).
Length = 459
Score = 29.1 bits (66), Expect = 3.0
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 24/102 (23%)
Query: 1 MKKLDSLPVIIPRHINQHQIELVVMFFI----TNVCNNY---AFDFNIAMPLHMIFRAGS 53
+ ++D+L + + F I N+ N+ A+D + P + FR G
Sbjct: 288 VARIDNLTATVL---------AALTFLIATVGINIVANFVSPAYDLSNLAPKKISFRRGG 338
Query: 54 LITNMIMGIIILKKVY--------TLDKYVSVIMITLGIIIC 87
LI ++ +I +Y LD + + GI+I
Sbjct: 339 LIAAVLSVVITPWNLYNSPVVIHYFLDGLGAFLGPLFGILIV 380
>gnl|CDD|223507 COG0430, RCL1, RNA 3'-terminal phosphate cyclase [RNA processing
and modification].
Length = 341
Score = 28.4 bits (64), Expect = 4.4
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 115 WSLGITLL-TVALFISARMGIYQEVLYKTHGKYP 147
W+ + + V L + +MGI E+ G YP
Sbjct: 126 WAPPVDYIRRVTLPVLRKMGIECELEVLKRGFYP 159
>gnl|CDD|188448 TIGR03933, PIA_icaB, intercellular adhesin biosynthesis
polysaccharide N-deacetylase. A common motif in
bacterial biosynthesis of polysaccharide for export is
modification that follows polymerization. This model
describes a subfamily of polysaccharide N-deacetylases
that acts on poly-beta-1,6-N-acetyl-D-glyscosamine as
produced by Staphylococcus epidermidis and S. aureus.
The end product in these species is designated
polysaccharide intercellular adhesin (PIA), and this
gene designated icaB (intercellular adhesion protein B)
[Cell envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Cellular
processes, Pathogenesis].
Length = 245
Score = 28.3 bits (63), Expect = 4.8
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 85 IICTIMSSQEIKKYGVSDEEQLSYSENLFWW-SLGITLLTVALFISARMGIYQEVLYKTH 143
I + SS+EIK Y VSD E + + W + LT+ FI YK
Sbjct: 20 FISLLSSSKEIKNYSVSDSE---FESQIKWLKAHDAKFLTLKEFIK----------YKEK 66
Query: 144 GKYP 147
GK+P
Sbjct: 67 GKFP 70
>gnl|CDD|212054 cd11485, SLC-NCS1sbd_YbbW-like, uncharacterized
nucleobase-cation-symport-1 (NCS1) transporter
subfamily, YbbW-like; solute-binding domain. NCS1s are
essential components of salvage pathways for nucleobases
and related metabolites; their known substrates include
allantoin, uracil, thiamine, and nicotinamide riboside.
This subfamily includes the putative allantoin
transporter Escherichia coli YbbW (also known as GlxB2).
NCS1s belong to a superfamily which also contains the
solute carrier 5 family sodium/glucose transporters
(SLC5s), and solute carrier 6 family neurotransmitter
transporters (SLC6s).
Length = 459
Score = 27.9 bits (63), Expect = 7.8
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 8 PVIIPRHINQHQIELVVMFFI------TNVCNNY---AFDFNIAMPLHMIFRAGSLITNM 58
PV + + ++ + I TNV N A+DF P + FR G LIT
Sbjct: 284 PVDLLSRFDNPVAVIIALLAIILATLSTNVAANLVSPAYDFANLFPKRISFRRGGLIT-A 342
Query: 59 IMGIIIL--KKVYTLDKYVSVIMITLG 83
++G++I+ K + + Y+ + G
Sbjct: 343 VLGLLIMPWKLLESASGYIFTWLGGYG 369
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 27.8 bits (62), Expect = 8.5
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 228 LVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQLVPSLMGM 277
LV L + FS + N Y W+ LV V IF + P+ + M
Sbjct: 311 LVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEM 360
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism /
Amino acid transport and metabolism / General function
prediction only].
Length = 292
Score = 27.5 bits (61), Expect = 9.3
Identities = 16/86 (18%), Positives = 30/86 (34%)
Query: 181 PLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLF 240
L + + I + + L V + L YY + V L+ L + L
Sbjct: 199 LFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALL 258
Query: 241 SIVYFQNEFTLYHWTGTALVFVGTVI 266
++ + G ALV +G ++
Sbjct: 259 GVLLLGEPLSPAQLLGAALVVLGVLL 284
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.141 0.422
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,211,498
Number of extensions: 1516352
Number of successful extensions: 2469
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2445
Number of HSP's successfully gapped: 133
Length of query: 293
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 197
Effective length of database: 6,679,618
Effective search space: 1315884746
Effective search space used: 1315884746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.6 bits)