RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy348
(293 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 2e-07
Identities = 33/190 (17%), Positives = 51/190 (26%), Gaps = 84/190 (44%)
Query: 125 ALFISARMG---IY----------------QEVLYKTHGKYPY--EALYYT---HLLPLP 160
ALF + G + ++ LY+T Y L L L
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD-LYQT---YHVLVGDLIKFSAETLSELI 199
Query: 161 AFAFLYKNLYEH------WLIAVNSTPLPLPSYL--SFISIPSIVFYLLGNVLTQYLCIS 212
+ ++ WL N + P YL IS P I + Q
Sbjct: 200 RTTLDAEKVFTQGLNILEWL--ENPSNTPDKDYLLSIPISCPLIG-------VIQLAH-- 248
Query: 213 SVYYLTTECNSLTVT---------------------LVI-----------TLRKFVSLLF 240
Y +T L T + I ++RK +++LF
Sbjct: 249 --YVVT--AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 241 SI-VYFQNEF 249
I V +
Sbjct: 305 FIGVRCYEAY 314
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.66
Identities = 38/270 (14%), Positives = 76/270 (28%), Gaps = 90/270 (33%)
Query: 48 IFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGII-------ICTIMSSQEIKKYGV 100
+F + I +++ +I + + V + ++ +I S K +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 101 SDEEQL------SYS--ENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALY 152
+E L Y+ + L L +Y Y +
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLD---------------------QYFYSHIG 478
Query: 153 YTHLLPL------PAFAFLYKNLYEHWL---IAVNSTPLPLPSYLSFISIPSIVFYLLGN 203
+ HL + F ++ + +L I +ST + N
Sbjct: 479 H-HLKNIEHPERMTLFRMVFLDF--RFLEQKIRHDSTAWNASGSIL-------------N 522
Query: 204 VLTQYLCISSVY--YLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVF 261
L Q Y Y+ LV + F+ + E L T L+
Sbjct: 523 TLQQL----KFYKPYICDNDPKYE-RLVNAILDFL--------PKIEENLICSKYTDLL- 568
Query: 262 VGTVIFTQLVPSLM----GMFGEKTKKSKK 287
++ +LM +F E K+ ++
Sbjct: 569 -------RI--ALMAEDEAIFEEAHKQVQR 589
Score = 30.6 bits (68), Expect = 0.76
Identities = 44/309 (14%), Positives = 85/309 (27%), Gaps = 81/309 (26%)
Query: 15 INQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMI--------------- 59
+ Q E+V F + NY F + P+ R S++T M
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKF---LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 60 -MGIIILKKVYTLDKYVSVIMITLGIIIC-------TIMSSQEIKKYGVSDEEQLSYSEN 111
+ L+ L + + + ++I T ++ Y V Q
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV----QCKMDFK 183
Query: 112 LFWWSLG-------ITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAF 164
+FW +L + + L + ++ K ++ L L
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI-QAELRRL----- 237
Query: 165 LYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIV--FYLLGNVLTQYLCISSVYYLTTECN 222
L YE+ L+ L + F N+ + L LTT
Sbjct: 238 LKSKPYENCLLV-----------LLNVQNAKAWNAF----NLSCKIL-------LTTRFK 275
Query: 223 SLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALV--FVGTVIFT------QLVPSL 274
+T L +SL + + +L+ ++ P
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVK------SLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 275 MGMFGEKTK 283
+ + E +
Sbjct: 330 LSIIAESIR 338
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.8
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 13/30 (43%)
Query: 1 MKKL---------DSLPVIIPRHINQHQIE 21
+KKL DS P + I +E
Sbjct: 22 LKKLQASLKLYADDSAPALA---IKA-TME 47
Score = 28.0 bits (61), Expect = 2.2
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 15/41 (36%)
Query: 93 QEIKKYGVSDEEQLS-YSENLFWWSLGITLLTVALFISARM 132
Q +KK + L Y+++ S AL I A M
Sbjct: 20 QALKKL----QASLKLYADD----S------APALAIKATM 46
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle
transport, cytoplasm, endoplasmic reticulum, ER-golgi
transport, golgi apparatus; 2.35A {Homo sapiens}
Length = 766
Score = 29.1 bits (64), Expect = 1.8
Identities = 14/50 (28%), Positives = 19/50 (38%)
Query: 164 FLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISS 213
F Y L V ST P S + + YLL N L +L + +
Sbjct: 618 FFYPRLLPLTKSPVESTTEPPAVRASEERLSNGDIYLLENGLNLFLWVGA 667
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition
state, activation helix, serine/threonine-PR kinase;
HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Length = 340
Score = 28.1 bits (63), Expect = 3.6
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 17/36 (47%)
Query: 115 WSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEA 150
WSLGIT++ +A+ ++PY++
Sbjct: 241 WSLGITMIELAI-----------------LRFPYDS 259
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant,
structural genomics consortium, SCG, binding,
nucleotide-binding, phosphoprotein; HET: STU; 2.26A
{Homo sapiens} PDB: 3enm_A
Length = 290
Score = 27.6 bits (62), Expect = 4.8
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 17/37 (45%)
Query: 115 WSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEAL 151
WSLGIT++ +A+ ++PY++
Sbjct: 197 WSLGITMIELAI-----------------LRFPYDSW 216
>3jte_A Response regulator receiver protein; structural genomics, nysgrc,
response regulator receiver domain, target 11226E,
PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Length = 143
Score = 26.7 bits (60), Expect = 5.8
Identities = 10/32 (31%), Positives = 22/32 (68%), Gaps = 4/32 (12%)
Query: 54 LITNMIM----GIIILKKVYTLDKYVSVIMIT 81
+IT+M M G+ IL+++ + +++VI++T
Sbjct: 53 VITDMKMPKLSGMDILREIKKITPHMAVIILT 84
>2qr3_A Two-component system response regulator; structural genomics,
signal receiver, PSI-2, protein structu initiative;
1.80A {Bacteroides fragilis}
Length = 140
Score = 26.4 bits (59), Expect = 7.1
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 61 GIIILKKVYTLDKYVSVIMIT 81
G+ L ++ + + V++ T
Sbjct: 67 GLFWLHEIKRQYRDLPVVLFT 87
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7,
activated mutant, ATP-binding, structural genomics,
NPPSFA; 2.45A {Homo sapiens}
Length = 318
Score = 26.9 bits (60), Expect = 8.8
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 32/76 (42%)
Query: 115 WSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWL 174
WSLGI+L+ +A G++PY+ K +E
Sbjct: 213 WSLGISLVELA-----------------TGQFPYKN---------------CKTDFEVLT 240
Query: 175 IAVNSTPLPLPSYLSF 190
+ P LP ++ F
Sbjct: 241 KVLQEEPPLLPGHMGF 256
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.141 0.422
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,453,227
Number of extensions: 264167
Number of successful extensions: 588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 25
Length of query: 293
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 200
Effective length of database: 4,105,140
Effective search space: 821028000
Effective search space used: 821028000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.7 bits)