BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3481
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6IQT4|CSN2_DANRE COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2
SV=1
Length = 443
Score = 496 bits (1278), Expect = e-140, Method: Compositional matrix adjust.
Identities = 255/340 (75%), Positives = 272/340 (80%), Gaps = 55/340 (16%)
Query: 1 MSDCEDTFMCDEEEDYGLEYSEDSNSEPDVDLENQYYNSKALKEDDPKAALQSFQKVLDL 60
MSD ED FMCD+EEDY LEYSEDSNSEP+VDLENQYYNSKALKEDDPKAAL SFQKVL+L
Sbjct: 1 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL 60
Query: 61 ESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYI 120
E GE+GEWGFKALKQMIKINFKL+N+ EMM+RYKQLL YI+SAVTRNYSEKSINSILDYI
Sbjct: 61 E-GEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI 119
Query: 121 STSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180
STSK M+LLQ+FYETTLEALKDAKNDRLWFKTNTKLGKLY +RE+F KL +IL+QLHQSC
Sbjct: 120 STSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEFGKLQKILRQLHQSC 179
Query: 181 QTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRG 240
QTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYEQSLHIKSAIPH
Sbjct: 180 QTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPH--------- 230
Query: 241 LFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALECGGKMH 300
P + G+ +R ECGGKMH
Sbjct: 231 ---------------------PLIMGV-----------------IR-------ECGGKMH 245
Query: 301 LREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340
LREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM
Sbjct: 246 LREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 285
>sp|P61203|CSN2_RAT COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2
PE=2 SV=1
Length = 443
Score = 495 bits (1275), Expect = e-139, Method: Compositional matrix adjust.
Identities = 254/340 (74%), Positives = 272/340 (80%), Gaps = 55/340 (16%)
Query: 1 MSDCEDTFMCDEEEDYGLEYSEDSNSEPDVDLENQYYNSKALKEDDPKAALQSFQKVLDL 60
MSD ED FMCD+EEDY LEYSEDSNSEP+VDLENQYYNSKALKEDDPKAAL SFQKVL+L
Sbjct: 1 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL 60
Query: 61 ESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYI 120
E GE+GEWGFKALKQMIKINFKL+N+ EMM+RYKQLL YI+SAVTRNYSEKSINSILDYI
Sbjct: 61 E-GEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI 119
Query: 121 STSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180
STSK M+LLQ+FYETTLEALKDAKNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSC
Sbjct: 120 STSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSC 179
Query: 181 QTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRG 240
QTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYEQSLHIKSAIPH
Sbjct: 180 QTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPH--------- 230
Query: 241 LFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALECGGKMH 300
P + G+ +R ECGGKMH
Sbjct: 231 ---------------------PLIMGV-----------------IR-------ECGGKMH 245
Query: 301 LREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340
LREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM
Sbjct: 246 LREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 285
>sp|P61202|CSN2_MOUSE COP9 signalosome complex subunit 2 OS=Mus musculus GN=Cops2 PE=1
SV=1
Length = 443
Score = 495 bits (1275), Expect = e-139, Method: Compositional matrix adjust.
Identities = 254/340 (74%), Positives = 272/340 (80%), Gaps = 55/340 (16%)
Query: 1 MSDCEDTFMCDEEEDYGLEYSEDSNSEPDVDLENQYYNSKALKEDDPKAALQSFQKVLDL 60
MSD ED FMCD+EEDY LEYSEDSNSEP+VDLENQYYNSKALKEDDPKAAL SFQKVL+L
Sbjct: 1 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL 60
Query: 61 ESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYI 120
E GE+GEWGFKALKQMIKINFKL+N+ EMM+RYKQLL YI+SAVTRNYSEKSINSILDYI
Sbjct: 61 E-GEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI 119
Query: 121 STSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180
STSK M+LLQ+FYETTLEALKDAKNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSC
Sbjct: 120 STSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSC 179
Query: 181 QTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRG 240
QTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYEQSLHIKSAIPH
Sbjct: 180 QTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPH--------- 230
Query: 241 LFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALECGGKMH 300
P + G+ +R ECGGKMH
Sbjct: 231 ---------------------PLIMGV-----------------IR-------ECGGKMH 245
Query: 301 LREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340
LREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM
Sbjct: 246 LREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 285
>sp|P61201|CSN2_HUMAN COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1
SV=1
Length = 443
Score = 495 bits (1275), Expect = e-139, Method: Compositional matrix adjust.
Identities = 254/340 (74%), Positives = 272/340 (80%), Gaps = 55/340 (16%)
Query: 1 MSDCEDTFMCDEEEDYGLEYSEDSNSEPDVDLENQYYNSKALKEDDPKAALQSFQKVLDL 60
MSD ED FMCD+EEDY LEYSEDSNSEP+VDLENQYYNSKALKEDDPKAAL SFQKVL+L
Sbjct: 1 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL 60
Query: 61 ESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYI 120
E GE+GEWGFKALKQMIKINFKL+N+ EMM+RYKQLL YI+SAVTRNYSEKSINSILDYI
Sbjct: 61 E-GEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI 119
Query: 121 STSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180
STSK M+LLQ+FYETTLEALKDAKNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSC
Sbjct: 120 STSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSC 179
Query: 181 QTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRG 240
QTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYEQSLHIKSAIPH
Sbjct: 180 QTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPH--------- 230
Query: 241 LFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALECGGKMH 300
P + G+ +R ECGGKMH
Sbjct: 231 ---------------------PLIMGV-----------------IR-------ECGGKMH 245
Query: 301 LREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340
LREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM
Sbjct: 246 LREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 285
>sp|Q6IR75|CSN2_XENLA COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis
GN=csn2 PE=2 SV=1
Length = 441
Score = 491 bits (1263), Expect = e-138, Method: Compositional matrix adjust.
Identities = 252/338 (74%), Positives = 268/338 (79%), Gaps = 55/338 (16%)
Query: 3 DCEDTFMCDEEEDYGLEYSEDSNSEPDVDLENQYYNSKALKEDDPKAALQSFQKVLDLES 62
D ED FMCD+EEDY LEYSEDSNSEP+VDLENQYYNSKALKEDDPKAAL SFQKVL+LE
Sbjct: 1 DMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELE- 59
Query: 63 GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122
GE+GEWGFKALKQMIKINFKL NY EMM+RYKQLL YI+SAVTRNYSEKSINSILDYIST
Sbjct: 60 GEKGEWGFKALKQMIKINFKLGNYPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYIST 119
Query: 123 SKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQT 182
SK M+LLQ+FYETTL+ALKDAKNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSCQT
Sbjct: 120 SKQMDLLQEFYETTLDALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQT 179
Query: 183 DDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRGLF 242
DDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYEQSLHIKSAIPH
Sbjct: 180 DDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPH----------- 228
Query: 243 VIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALECGGKMHLR 302
PL I+ + ECGGKMHLR
Sbjct: 229 ----------------PL---------------------------IMGVIRECGGKMHLR 245
Query: 303 EGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340
EGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM
Sbjct: 246 EGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 283
>sp|Q94899|CSN2_DROME COP9 signalosome complex subunit 2 OS=Drosophila melanogaster
GN=alien PE=1 SV=2
Length = 444
Score = 481 bits (1238), Expect = e-135, Method: Compositional matrix adjust.
Identities = 245/325 (75%), Positives = 258/325 (79%), Gaps = 54/325 (16%)
Query: 16 YGLEYSEDSNSEPDVDLENQYYNSKALKEDDPKAALQSFQKVLDLESGERGEWGFKALKQ 75
YGLEYSEDSNSEPDVDLENQYYNSKALKE++PKAAL SFQKVLDLE+GE+GEWGFKALKQ
Sbjct: 16 YGLEYSEDSNSEPDVDLENQYYNSKALKEEEPKAALASFQKVLDLENGEKGEWGFKALKQ 75
Query: 76 MIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYET 135
MIKINF+L NY EMM RYKQLL YIKSAVTRN+SEKSINSILDYISTSKNM LLQ+FYET
Sbjct: 76 MIKINFRLCNYDEMMVRYKQLLTYIKSAVTRNHSEKSINSILDYISTSKNMALLQNFYET 135
Query: 136 TLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQL 195
TL+AL+DAKNDRLWFKTNTKLGKLYFDR DF KL +ILKQLHQSCQTDDGEDDLKKGTQL
Sbjct: 136 TLDALRDAKNDRLWFKTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQL 195
Query: 196 LEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRGLFVIEAHEQNMEGLR 255
LEIYALEIQMYT QKNNKKLK LYEQSLHIKSAIPH
Sbjct: 196 LEIYALEIQMYTVQKNNKKLKALYEQSLHIKSAIPH------------------------ 231
Query: 256 FKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALECGGKMHLREGEFEKAHTDFFE 315
P + G+ +R ECGGKMHLREGEFEKAHTDFFE
Sbjct: 232 ------PLIMGV-----------------IR-------ECGGKMHLREGEFEKAHTDFFE 261
Query: 316 AFKNYDESGSPRRTTCLKYLVLANM 340
AFKNYDESGSPRRTTCLKYLVLANM
Sbjct: 262 AFKNYDESGSPRRTTCLKYLVLANM 286
>sp|O01422|CSN2_CAEEL COP9 signalosome complex subunit 2 OS=Caenorhabditis elegans
GN=csn-2 PE=1 SV=2
Length = 495
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 197/328 (60%), Positives = 231/328 (70%), Gaps = 59/328 (17%)
Query: 17 GLEYSEDSNSEPDVDLENQYYNSKALKEDDP-KAALQSFQKVLDLESGERGEWGFKALKQ 75
G EY +DS SEPDVD+ENQYY +K L+ D A++SF+KVL+LE GE+GEWGFKALKQ
Sbjct: 13 GFEYEDDSGSEPDVDMENQYYTAKGLRSDGKLDEAIKSFEKVLELE-GEKGEWGFKALKQ 71
Query: 76 MIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYET 135
MIKI F + ++M+ Y+QLL YIKSAVT+NYSEKSIN+ILDYISTS+ M+LLQ FYET
Sbjct: 72 MIKITFGQNRLEKMLEYYRQLLTYIKSAVTKNYSEKSINAILDYISTSRQMDLLQHFYET 131
Query: 136 TLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQL 195
TL+ALKDAKN+RLWFKTNTKLGKL+FD +F KL +I+KQL SC+ + GE+D +KGTQL
Sbjct: 132 TLDALKDAKNERLWFKTNTKLGKLFFDLHEFTKLEKIVKQLKVSCKNEQGEEDQRKGTQL 191
Query: 196 LEIYALEIQMYTAQKNNKKLKKLYE---QSLHIKSAIPHPLIMGVIRGLFVIEAHEQNME 252
LEIYALEIQMYT QKNNK LK +YE Q++H KSAIPH
Sbjct: 192 LEIYALEIQMYTEQKNNKALKWVYELATQAIHTKSAIPH--------------------- 230
Query: 253 GLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALECGGKMHLREGEFEKAHTD 312
PL+ L +R ECGGKMHLR+G F AHTD
Sbjct: 231 ------PLI--------------------LGTIR-------ECGGKMHLRDGRFLDAHTD 257
Query: 313 FFEAFKNYDESGSPRRTTCLKYLVLANM 340
FFEAFKNYDESGSPRRTTCLKYLVLANM
Sbjct: 258 FFEAFKNYDESGSPRRTTCLKYLVLANM 285
>sp|Q8W207|CSN2_ARATH COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2
PE=1 SV=1
Length = 439
Score = 306 bits (783), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 163/329 (49%), Positives = 215/329 (65%), Gaps = 57/329 (17%)
Query: 14 EDYGLEYSEDSNSEPDVDLENQYYNSKALKEDDPKAALQSFQKVLDLESGERGEWGFKAL 73
EDYG EYS++ E DVD+ENQYYNSK + E +P+ AL F +V+ +E E+ +WGFKAL
Sbjct: 8 EDYGFEYSDEEQEEQDVDIENQYYNSKGMVETEPEEALSGFAEVVQMEP-EKADWGFKAL 66
Query: 74 KQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIS--TSKNMELLQD 131
KQ +KI ++L YKEMM Y ++L YIKSAVTRNYSEK IN+I+D++S S+N LLQ+
Sbjct: 67 KQTVKIYYRLGKYKEMMEAYTEMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNTGLLQE 126
Query: 132 FYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKK 191
FY+TTL+AL++AKN+RLWFKTN KL ++FD ++ ++++ILK+LH+SCQ +DG DD KK
Sbjct: 127 FYQTTLKALEEAKNERLWFKTNLKLCNIWFDIGEYRRMTKILKELHKSCQKEDGTDDQKK 186
Query: 192 GTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRGLFVIEAHEQNM 251
G+QLLE+YA+EIQ+YT K+NKKLK Q H AI + H + M
Sbjct: 187 GSQLLEVYAIEIQIYTETKDNKKLK----QLYHKALAIKSAI------------PHPRIM 230
Query: 252 EGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALECGGKMHLREGEFEKAHT 311
+R ECGGKMH+ E ++E+A T
Sbjct: 231 GIIR--------------------------------------ECGGKMHMAERQWEEAAT 252
Query: 312 DFFEAFKNYDESGSPRRTTCLKYLVLANM 340
DFFEAFKNYDE+G+ RR CLKYLVLANM
Sbjct: 253 DFFEAFKNYDEAGNQRRIQCLKYLVLANM 281
>sp|Q54HL6|CSN2_DICDI COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum
GN=csn2 PE=1 SV=1
Length = 449
Score = 291 bits (745), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 149/313 (47%), Positives = 208/313 (66%), Gaps = 56/313 (17%)
Query: 30 VDLENQYYNSKALKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEM 89
V++ENQYYNSK L ++ A++S++KV+DLE+GE+GEWGFKALK++ K+ F++ ++ M
Sbjct: 31 VEIENQYYNSKGLIDESIPDAIKSYEKVVDLENGEKGEWGFKALKKITKLYFRIGDFDNM 90
Query: 90 MSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMEL--LQDFYETTLEALKDAKNDR 147
+ +K+ L Y KS+ + NY EK INS+LD +S+S +EL +Q ++ TL++L D KN+R
Sbjct: 91 LESFKKFLPYTKSSASSNYIEKGINSVLDMVSSSNTIELDMIQKVFDLTLKSLLDTKNER 150
Query: 148 LWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYT 207
+WF+TN KL KL F++ ++ +L++IL+ LH+SC+ +DG DD KKG+QL++IYALEIQMYT
Sbjct: 151 VWFRTNLKLAKLLFEKAEYGRLAKILRDLHKSCELEDGTDDQKKGSQLVDIYALEIQMYT 210
Query: 208 AQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGL 267
KNNKKLK LY+++L IKSAIPH P + G+
Sbjct: 211 ETKNNKKLKDLYKKALEIKSAIPH------------------------------PRIMGI 240
Query: 268 SIFFNIELMANLNVLTWLRFIIWMALECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPR 327
+R ECGGKMH+ E E+EKAHTDFFEAFKNYDE+G+ R
Sbjct: 241 -----------------IR-------ECGGKMHMAEKEWEKAHTDFFEAFKNYDEAGNSR 276
Query: 328 RTTCLKYLVLANM 340
R CLKYLVLA M
Sbjct: 277 RIQCLKYLVLACM 289
>sp|Q5B3U7|CSN2_EMENI COP9 signalosome complex subunit 2 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnB PE=1 SV=2
Length = 506
Score = 262 bits (670), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 146/346 (42%), Positives = 207/346 (59%), Gaps = 62/346 (17%)
Query: 1 MSDCEDTFMCDE-EEDYGLEYSE-DSNSEPDVDLENQYYNSKALKEDDPKAALQSFQKVL 58
MSD +D FM D +E+Y EY + D + D+ +EN+YYN+K +K D+P+ A+ F V
Sbjct: 1 MSD-DDDFMHDSADEEYDFEYEDADDDETGDIGIENKYYNAKQIKVDNPEEAIDEFLGVP 59
Query: 59 DLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILD 118
LE ++G+WGFK LKQ IK+ FKL Y + + Y++LL Y+KSAVTRNYSEKSIN++LD
Sbjct: 60 ALEQ-DKGDWGFKGLKQAIKLEFKLGRYSDAVEHYRELLTYVKSAVTRNYSEKSINNMLD 118
Query: 119 YISTS----KNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILK 174
YI K + +++FY TL + ++ N+RLW KTN KL +L+ +R ++ +LS+ ++
Sbjct: 119 YIEKGSDDEKAYQCMEEFYSLTLNSFQNTNNERLWLKTNIKLARLWLERREYGQLSKKVR 178
Query: 175 QLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLI 234
+LH++CQ +DG DD KGT LLE+YALEIQMY KNNK+LK LY+++L +
Sbjct: 179 ELHRACQREDGSDDPSKGTYLLELYALEIQMYAETKNNKRLKALYQRALRV--------- 229
Query: 235 MGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALE 294
R VP P + G+ E
Sbjct: 230 --------------------RSAVPH-PKIMGI------------------------IRE 244
Query: 295 CGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340
CGGKMH+ E +E+A +DFFE+F+NYDE+GS +R LKYLVL M
Sbjct: 245 CGGKMHMSEENWEEAQSDFFESFRNYDEAGSMQRIQVLKYLVLTTM 290
>sp|Q7SI58|CSN2_NEUCR COP9 signalosome complex subunit 2 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-2 PE=1 SV=1
Length = 490
Score = 254 bits (650), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 134/313 (42%), Positives = 186/313 (59%), Gaps = 59/313 (18%)
Query: 32 LENQYYNSKALKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMS 91
+EN+YYN+K K DP+ ALQ F + LE E+G+WGFKALKQ IK+ FKL Y+E
Sbjct: 31 IENKYYNAKQTKTSDPEEALQEFLSIPPLEQ-EKGDWGFKALKQAIKLEFKLKRYQEATE 89
Query: 92 RYKQLLLYIKSAVTRNYSEKSINSILDYISTS----KNMELLQDFYETTLEALKDAKNDR 147
Y++LL Y+KSAVTRNYSEKSI+++L+YI K ++ ++ FY TL+ + N+R
Sbjct: 90 HYEELLTYVKSAVTRNYSEKSIDNMLNYIEKGYDDPKAVQCIEKFYSLTLQCFQSTNNER 149
Query: 148 LWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYT 207
LW KTN KL +L DR+D++ ++R L++LH +C+ DG DD KGT LEIYALEIQMY+
Sbjct: 150 LWLKTNIKLARLLLDRKDYHAVARKLRELHNACRKSDGTDDPSKGTYSLEIYALEIQMYS 209
Query: 208 AQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGL 267
+NN +LK LY+++L ++SA+PH P + G+
Sbjct: 210 ETRNNNQLKVLYQKALKVRSAVPH------------------------------PKIQGV 239
Query: 268 SIFFNIELMANLNVLTWLRFIIWMALECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPR 327
ECGGKMH+ E +++A +DFFEAF+NYDE+G R
Sbjct: 240 ------------------------IRECGGKMHMSEENWKEAQSDFFEAFRNYDEAGDLR 275
Query: 328 RTTCLKYLVLANM 340
R LKYL+L M
Sbjct: 276 RIQVLKYLLLTTM 288
>sp|Q9HFR0|CSN2_SCHPO COP9 signalosome complex subunit 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn2 PE=1 SV=1
Length = 437
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 205/337 (60%), Gaps = 58/337 (17%)
Query: 8 FMCDEEEDYGLEYSEDSNS--EPDVDLENQYYNSKALKEDDPKAALQSFQKVLDLESGER 65
FM +++E+Y E+ +D + EP VD+EN YYNSK+LKE++P++AL SF +++ GE+
Sbjct: 5 FMLEDDENYDFEFEDDDDDMIEPYVDVENCYYNSKSLKEENPESALTSFYSIVEKCEGEQ 64
Query: 66 GEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIK-SAVTRNYSEKSINSILDYISTSK 124
EW FKALKQ+ KINF+L Y +M+ Y++LL Y ++T+NYSEKSI +I++Y S+ +
Sbjct: 65 NEWAFKALKQITKINFQLKKYDDMLQSYQRLLGYTNWLSITKNYSEKSIYNIVEYASSCE 124
Query: 125 NMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDD 184
N E L+ FY+ T +AL++ N+RL K + + +++++K +L+Q+H+ ++
Sbjct: 125 NTEFLEKFYDVTTKALQNLNNERLMLKVLMHVARFLLTQKNYHKFKYLLRQMHELLSDEN 184
Query: 185 GE-DDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRGLFV 243
D +GT LLE+Y+LEIQMY+ ++NK+LK+LY+ SL +K+AIPH
Sbjct: 185 NSVADQNRGTHLLELYSLEIQMYSDIEDNKRLKELYQSSLRVKTAIPH------------ 232
Query: 244 IEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALECGGKMHLRE 303
P + G+ +R ECGGKMH++E
Sbjct: 233 ------------------PRIMGI-----------------IR-------ECGGKMHMQE 250
Query: 304 GEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340
++ +A T+FFE+FK+YDE+GS R LKYLVLANM
Sbjct: 251 NQWSEAQTNFFESFKSYDEAGSSDRIRVLKYLVLANM 287
>sp|B3TP03|CTR2_CHICK Low affinity cationic amino acid transporter 2 OS=Gallus gallus
GN=SLC7A2 PE=2 SV=1
Length = 654
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 233 LIMGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMA 292
L++ I + +I+ QN + + F VPL+PF+P LSI NI LM L+ TW+RF IWMA
Sbjct: 532 LVVSFIVTILLIQRQPQNQQKVAFMVPLLPFLPSLSILVNIYLMVQLSADTWIRFSIWMA 591
Query: 293 LECGGKMHLREG---EFEKAHTD 312
L G ++ G E H+D
Sbjct: 592 L--GFIIYFTYGIRHSLEGRHSD 612
>sp|Q5PR34|CTR2_DANRE Low affinity cationic amino acid transporter 2 OS=Danio rerio
GN=slc7a2 PE=2 SV=1
Length = 640
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 238 IRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMAL 293
I +F+I Q + + F VPL+PF+P LSIF N+ LM L+ TW+RF IWMA+
Sbjct: 534 IICVFLICRQPQTRKKVSFMVPLLPFLPILSIFVNVYLMVQLSGDTWIRFSIWMAI 589
>sp|Q8BLQ7|CTR4_MOUSE Cationic amino acid transporter 4 OS=Mus musculus GN=Slc7a4 PE=1
SV=1
Length = 635
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 33/51 (64%)
Query: 241 LFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWM 291
L V+ AH+Q + F++PLVP P LSI N LM L+ LTWLRFI W+
Sbjct: 525 LLVLGAHQQQKKQDTFQIPLVPLTPALSILLNTCLMLKLSYLTWLRFIFWL 575
>sp|O43246|CTR4_HUMAN Cationic amino acid transporter 4 OS=Homo sapiens GN=SLC7A4 PE=2
SV=3
Length = 635
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 241 LFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWM 291
L V+ AH+Q F++P+VP +P LSI NI LM L+ LTW+RF IW+
Sbjct: 525 LLVLGAHQQQYREDLFQIPMVPLIPALSIVLNICLMLKLSYLTWVRFSIWL 575
>sp|P18581|CTR2_MOUSE Low affinity cationic amino acid transporter 2 OS=Mus musculus
GN=Slc7a2 PE=1 SV=3
Length = 657
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 241 LFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMAL 293
+ I QN + + F VP +PF+P SI NI LM L+ TW+RF IWMAL
Sbjct: 540 ILTIWRQPQNQQKVAFMVPFLPFLPAFSILVNIYLMVQLSADTWIRFSIWMAL 592
>sp|A8I499|CTR2_PIG Low affinity cationic amino acid transporter 2 OS=Sus scrofa
GN=SLC7A2 PE=2 SV=1
Length = 657
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 247 HEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMAL 293
QN + + F VP +PF+P SI NI LM L+ TW+RF IWMAL
Sbjct: 546 QPQNQQKVAFMVPFLPFLPAFSILVNIYLMVQLSADTWIRFSIWMAL 592
>sp|P52569|CTR2_HUMAN Low affinity cationic amino acid transporter 2 OS=Homo sapiens
GN=SLC7A2 PE=1 SV=2
Length = 658
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 241 LFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMAL 293
+ I QN + + F VP +PF+P SI NI LM L+ TW+RF IWMA+
Sbjct: 541 VLTIWRQPQNQQKVAFMVPFLPFLPAFSILVNIYLMVQLSADTWVRFSIWMAI 593
>sp|P70423|CTR3_MOUSE Cationic amino acid transporter 3 OS=Mus musculus GN=Slc7a3 PE=2
SV=1
Length = 618
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 233 LIMGVIRGL-FVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWM 291
LI+G+I + VI QN L FKVP VP +P +SIF N+ LM + TW RF IWM
Sbjct: 514 LILGLILAISGVIWRQPQNRTPLHFKVPAVPLLPLVSIFVNVYLMMQMTAGTWARFGIWM 573
>sp|B5D5N9|CTR2_RAT Low affinity cationic amino acid transporter 2 OS=Rattus norvegicus
GN=Slc7a2 PE=2 SV=1
Length = 657
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%)
Query: 241 LFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMAL 293
+ I QN + + F VP +PF+P SI NI LM L+ TW+RF IWM L
Sbjct: 540 ILTIWRQPQNQQKVAFMVPFLPFLPAFSILVNIYLMVQLSADTWVRFSIWMVL 592
>sp|P30823|CTR1_RAT High affinity cationic amino acid transporter 1 OS=Rattus
norvegicus GN=Slc7a1 PE=2 SV=1
Length = 624
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 27/38 (71%)
Query: 254 LRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWM 291
L FKVP VP +P LSIF NI LM L+ TW+RF +WM
Sbjct: 551 LSFKVPFVPVLPVLSIFVNIYLMMQLDQGTWVRFAVWM 588
>sp|Q09143|CTR1_MOUSE High affinity cationic amino acid transporter 1 OS=Mus musculus
GN=Slc7a1 PE=2 SV=1
Length = 622
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 27/38 (71%)
Query: 254 LRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWM 291
L FKVP VP +P LSIF NI LM L+ TW+RF +WM
Sbjct: 549 LSFKVPFVPVLPVLSIFVNIYLMMQLDQGTWVRFAVWM 586
>sp|P30825|CTR1_HUMAN High affinity cationic amino acid transporter 1 OS=Homo sapiens
GN=SLC7A1 PE=1 SV=1
Length = 629
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 233 LIMGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWM 291
L+ V+ G VI ++ L FKVP +P +P LSIF N+ LM L+ TW+RF +WM
Sbjct: 537 LLCAVVTG--VIWRQPESKTKLSFKVPFLPVLPILSIFVNVYLMMQLDQGTWVRFAVWM 593
>sp|Q8BXR1|S7A14_MOUSE Probable cationic amino acid transporter OS=Mus musculus GN=Slc7a14
PE=2 SV=1
Length = 771
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 241 LFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIW 290
+FVI +N + L + P +PFVP ++ NI LM L+ +TW+RF +W
Sbjct: 612 VFVILQQPENPKKLPYMAPCLPFVPAFAMLVNIYLMLKLSTITWIRFAVW 661
>sp|A0JNI9|S7A14_BOVIN Probable cationic amino acid transporter OS=Bos taurus GN=SLC7A14
PE=2 SV=1
Length = 771
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 241 LFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIW 290
+FVI +N + L + P +PFVP ++ NI LM L+ +TW+RF +W
Sbjct: 612 VFVILQQPENPKKLPYMAPCLPFVPAFAMLVNIYLMLKLSTITWIRFAVW 661
>sp|Q8TBB6|S7A14_HUMAN Probable cationic amino acid transporter OS=Homo sapiens GN=SLC7A14
PE=2 SV=3
Length = 771
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 241 LFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIW 290
+FVI +N + L + P +PFVP ++ NI LM L+ +TW+RF +W
Sbjct: 612 VFVILQQPENPKKLPYMAPCLPFVPAFAMLVNIYLMLKLSTITWIRFAVW 661
>sp|Q8WY07|CTR3_HUMAN Cationic amino acid transporter 3 OS=Homo sapiens GN=SLC7A3 PE=1
SV=1
Length = 619
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 247 HEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWM 291
Q+ L FKVP +P +P +SIF NI LM + TW RF +WM
Sbjct: 530 QPQSSTPLHFKVPALPLLPLMSIFVNIYLMMQMTAGTWARFGVWM 574
>sp|Q9C5D6|CAAT9_ARATH Cationic amino acid transporter 9, chloroplastic OS=Arabidopsis
thaliana GN=CAT9 PE=2 SV=1
Length = 569
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 253 GLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFII 289
G F P VP VP + IFFNI L A L+ W+RF++
Sbjct: 499 GSGFSCPGVPIVPSVCIFFNIFLFAQLHYEAWIRFVV 535
>sp|O07576|YHDG_BACSU Uncharacterized amino acid permease YhdG OS=Bacillus subtilis
(strain 168) GN=yhdG PE=2 SV=1
Length = 465
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 256 FKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWM 291
FK P VP +PGL+I F + L+ NL +T +RF++W+
Sbjct: 411 FKCPGVPVIPGLAILFCLFLILNLGWVTIVRFLVWL 446
>sp|Q8W4K3|CAAT4_ARATH Cationic amino acid transporter 4, vacuolar OS=Arabidopsis thaliana
GN=CAT4 PE=1 SV=1
Length = 600
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 245 EAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWM 291
E H +G F P VP++P L I N L+ N+ TW+R +IW+
Sbjct: 518 ERHNFGHKG-GFLCPFVPYLPVLCILINTYLIINIGAGTWIRVLIWL 563
>sp|F1QGH9|PS11B_DANRE 26S proteasome non-ATPase regulatory subunit 11B OS=Danio rerio
GN=psmd11b PE=2 SV=1
Length = 422
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 296 GGKMHL-REGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340
G +H E +++ A++ FFEAF+ YD SPR T LKY++L +
Sbjct: 214 SGIIHAAEEKDWKTAYSYFFEAFEGYDSIDSPRAVTALKYMLLCKI 259
>sp|Q797A7|YFNA_BACSU Uncharacterized amino acid permease YfnA OS=Bacillus subtilis
(strain 168) GN=yfnA PE=3 SV=1
Length = 461
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 256 FKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMAL 293
F+VP VP VP +S + M +L +TWL F+IW+A+
Sbjct: 407 FRVPFVPVVPIISAGICLWFMYSLPGVTWLSFVIWIAV 444
>sp|Q8GYB4|CAAT3_ARATH Cationic amino acid transporter 3, mitochondrial OS=Arabidopsis
thaliana GN=CAT3 PE=2 SV=1
Length = 609
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 256 FKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMAL 293
F P VP +P + I N+ L+ NL TW+R +W+ L
Sbjct: 534 FICPFVPLLPIVCILINMYLLVNLGAATWVRVSVWLFL 571
>sp|O08812|CTR3_RAT Cationic amino acid transporter 3 OS=Rattus norvegicus GN=Slc7a3
PE=2 SV=1
Length = 619
Score = 38.9 bits (89), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 233 LIMGVIRGL-FVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWM 291
LI+G+I G+ VI QN L FKVP+VP +P +SIF N+ LM + TW RF +WM
Sbjct: 515 LILGLILGISGVIWRQPQNRTPLHFKVPVVPLLPLVSIFVNVYLMMQMTADTWARFGVWM 574
>sp|Q6DCE8|CTR2_XENLA Low affinity cationic amino acid transporter 2 OS=Xenopus laevis
GN=slc7a2 PE=2 SV=1
Length = 622
Score = 38.9 bits (89), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 236 GVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMAL 293
G+I L +I QN F VP VP +P +SI NI LM L+ TWLR+ +WMA+
Sbjct: 513 GIIIALVIIWRQPQNQSKATFMVPFVPVLPVVSILVNIYLMVQLSTDTWLRYAVWMAV 570
>sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 OS=Arabidopsis
thaliana GN=RPN6A PE=1 SV=1
Length = 419
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 296 GGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340
G +H E +++ ++ FFEAF++++ G PR LKY++L +
Sbjct: 211 SGILHAEEKDYKTGYSYFFEAFESFNALGDPRAVFSLKYMLLCKI 255
>sp|F6P3G4|PS11A_DANRE 26S proteasome non-ATPase regulatory subunit 11A OS=Danio rerio
GN=psmd11a PE=2 SV=1
Length = 421
Score = 38.9 bits (89), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 296 GGKMHL-REGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340
G +H E +++ A++ F+EAF+ YD SPR T LKY++L +
Sbjct: 213 SGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPRAITALKYMLLCKI 258
>sp|Q84MA5|CAAT1_ARATH Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1
PE=1 SV=1
Length = 594
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 256 FKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMAL 293
+ VPLVP++P SI NI L+ +++ +++RF IW +
Sbjct: 513 WGVPLVPWLPSASIAINIFLLGSIDTKSFVRFAIWTGI 550
>sp|Q9SHH0|CAAT8_ARATH Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana
GN=CAT8 PE=1 SV=1
Length = 590
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 256 FKVPLVPFVPGLSIFFNIELMANLNVLTWLRFII 289
+ VPLVP++P SI N+ L+ +L + +LRFII
Sbjct: 523 WGVPLVPWLPSFSIAMNLFLIGSLGYVAFLRFII 556
>sp|Q8BG32|PSD11_MOUSE 26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus
GN=Psmd11 PE=1 SV=3
Length = 422
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 296 GGKMHL-REGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340
G +H E +++ A++ F+EAF+ YD SP+ T LKY++L +
Sbjct: 214 SGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKI 259
>sp|F1LMZ8|PSD11_RAT 26S proteasome non-ATPase regulatory subunit 11 OS=Rattus
norvegicus GN=Psmd11 PE=2 SV=2
Length = 422
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 296 GGKMHL-REGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340
G +H E +++ A++ F+EAF+ YD SP+ T LKY++L +
Sbjct: 214 SGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKI 259
>sp|O00231|PSD11_HUMAN 26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens
GN=PSMD11 PE=1 SV=3
Length = 422
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 296 GGKMHL-REGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340
G +H E +++ A++ F+EAF+ YD SP+ T LKY++L +
Sbjct: 214 SGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKI 259
>sp|Q2KI42|PSD11_BOVIN 26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus
GN=PSMD11 PE=2 SV=3
Length = 422
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 296 GGKMHL-REGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340
G +H E +++ A++ F+EAF+ YD SP+ T LKY++L +
Sbjct: 214 SGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKI 259
>sp|Q9ASS7|CAAT2_ARATH Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana
GN=CAT2 PE=1 SV=1
Length = 635
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 256 FKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWM 291
+ P VP +P + I N+ L+ NL TW R +W+
Sbjct: 560 YMCPFVPLLPIICILINMYLLVNLGSATWARVSVWL 595
>sp|Q75AS3|CSN10_ASHGO COP9 signalosome complex subunit 10 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RRI2
PE=3 SV=1
Length = 553
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 24/105 (22%)
Query: 5 EDTFMCDEEEDYGLEYSEDSN------------SEPDVDL-------ENQYYNSKALKED 45
ED M ++EE + E EDS+ +E +V L E +YY +K LKE+
Sbjct: 8 EDFMMSEDEEMHYAEMEEDSDEMGVYEEETSQGAEEEVPLDPSSSIVEGRYYRAKGLKEN 67
Query: 46 DP-KAALQSFQKVLDLESGERGEWGFKALKQMIKI-NFKLSNYKE 88
+ A+++ + V + W F+ALKQ+ K NFK + E
Sbjct: 68 SKFREAIEALEGV---ATSSEPLWAFRALKQIAKCWNFKGAQASE 109
>sp|O64759|CAAT5_ARATH Cationic amino acid transporter 5 OS=Arabidopsis thaliana GN=CAT5
PE=1 SV=1
Length = 569
Score = 35.8 bits (81), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 256 FKVPLVPFVPGLSIFFNIELMANLNVLTWLRF 287
+ VPLVP++P LSI NI LM +L + ++RF
Sbjct: 507 WGVPLVPWLPCLSIATNIFLMGSLGAMAFVRF 538
>sp|Q9P7M0|YOS3_SCHPO ABC1 family protein C21C3.03, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC21C3.03 PE=3 SV=2
Length = 692
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 261 VPFVPGLSIFFNIELMANLNVLTWLRFIIWMALECGGKMHLREGEFEKAHTDFF 314
+PF+ +S F ++ +++L V WLRF++ LE G ++ G++ + TD F
Sbjct: 172 LPFIALIS-FLHLRSLSSLTVSIWLRFLV-TQLERAGATFIKLGQWAASRTDLF 223
>sp|Q9SQZ0|CAAT7_ARATH Cationic amino acid transporter 7, chloroplastic OS=Arabidopsis
thaliana GN=CAT7 PE=3 SV=1
Length = 584
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 256 FKVPLVPFVPGLSIFFNIELMANLNVLTWLRF 287
+ VPL+P+ P +SIF NI L+ +L+ +++RF
Sbjct: 509 WGVPLMPWTPCVSIFLNIFLLGSLDAPSYIRF 540
>sp|F6XBL2|PSD11_XENTR 26S proteasome non-ATPase regulatory subunit 11 OS=Xenopus
tropicalis GN=psmd11 PE=3 SV=2
Length = 422
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 296 GGKMHL-REGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340
G +H E +++ A++ F+EAF+ D SP+ T LKY++L +
Sbjct: 214 SGIIHAAEEKDWKTAYSYFYEAFEGNDSIDSPKAITALKYMLLCKI 259
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,148,406
Number of Sequences: 539616
Number of extensions: 5269422
Number of successful extensions: 17815
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 17699
Number of HSP's gapped (non-prelim): 163
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)