Query psy3481
Match_columns 340
No_of_seqs 238 out of 1046
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 17:50:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1464|consensus 100.0 1.9E-91 4E-96 659.0 19.7 279 6-340 3-281 (440)
2 KOG1463|consensus 100.0 3.1E-35 6.7E-40 283.3 17.3 242 36-340 8-260 (411)
3 COG5159 RPN6 26S proteasome re 99.9 1.4E-26 3E-31 220.3 16.5 238 41-340 13-257 (421)
4 TIGR00906 2A0303 cationic amin 99.8 1.9E-19 4E-24 186.7 9.3 60 244-303 493-557 (557)
5 PF13906 AA_permease_C: C-term 99.6 1E-15 2.2E-20 111.6 4.5 46 256-301 1-51 (51)
6 TIGR00909 2A0306 amino acid tr 99.2 2E-11 4.3E-16 121.4 8.8 125 154-295 299-423 (429)
7 PRK11357 frlA putative fructos 99.2 3.6E-11 7.9E-16 120.6 9.3 121 157-295 304-428 (445)
8 TIGR00908 2A0305 ethanolamine 99.1 1.3E-10 2.9E-15 116.3 9.0 121 155-293 298-421 (442)
9 PRK10655 potE putrescine trans 98.9 3.8E-09 8.3E-14 105.7 9.9 137 155-304 294-432 (438)
10 TIGR00911 2A0308 L-type amino 98.8 1.4E-08 3.1E-13 103.6 8.3 123 154-295 338-463 (501)
11 PRK10644 arginine:agmatin anti 98.8 2.7E-08 5.8E-13 100.1 10.0 127 154-295 295-421 (445)
12 PRK11387 S-methylmethionine tr 98.7 2.4E-08 5.3E-13 101.3 8.1 129 155-295 311-449 (471)
13 PRK10836 lysine transporter; P 98.7 3.7E-08 7.9E-13 100.6 8.9 116 154-281 317-437 (489)
14 TIGR00905 2A0302 transporter, 98.7 5.6E-08 1.2E-12 98.7 9.9 134 154-302 303-438 (473)
15 PRK10580 proY putative proline 98.7 1E-07 2.3E-12 96.3 9.8 134 155-300 304-447 (457)
16 PRK11049 D-alanine/D-serine/gl 98.6 1.3E-07 2.8E-12 96.1 8.3 128 155-293 316-451 (469)
17 TIGR00930 2a30 K-Cl cotranspor 98.5 1.7E-07 3.8E-12 103.4 7.7 118 156-294 409-529 (953)
18 PRK10197 gamma-aminobutyrate t 98.5 6E-07 1.3E-11 90.8 10.2 112 154-277 286-399 (446)
19 TIGR00913 2A0310 amino acid pe 98.5 6.1E-07 1.3E-11 90.9 10.0 113 154-278 310-427 (478)
20 PRK15049 L-asparagine permease 98.4 1E-06 2.2E-11 90.7 10.4 110 155-277 325-438 (499)
21 TIGR03813 put_Glu_GABA_T putat 98.4 8.2E-07 1.8E-11 90.2 9.3 110 157-277 304-418 (474)
22 PRK10746 putative transport pr 98.4 1.2E-06 2.5E-11 89.2 9.8 131 155-295 305-442 (461)
23 PRK10249 phenylalanine transpo 98.3 2.7E-06 5.8E-11 86.4 10.0 112 155-278 314-427 (458)
24 PRK11021 putative transporter; 98.3 2E-06 4.4E-11 85.6 8.8 119 156-301 283-406 (410)
25 TIGR00910 2A0307_GadC glutamat 98.3 4.1E-06 8.9E-11 86.4 10.7 112 156-277 305-421 (507)
26 TIGR03810 arg_ornith_anti argi 98.3 4.2E-06 9E-11 85.0 10.1 125 154-295 299-424 (468)
27 TIGR00907 2A0304 amino acid pe 98.2 2.9E-06 6.4E-11 86.2 8.5 110 154-276 325-437 (482)
28 TIGR01773 GABAperm gamma-amino 98.2 3.5E-06 7.6E-11 84.9 8.8 112 154-277 306-419 (452)
29 PRK10435 cadB lysine/cadaverin 98.2 3.4E-06 7.3E-11 84.9 8.4 129 157-302 294-429 (435)
30 PRK10238 aromatic amino acid t 98.2 6.1E-06 1.3E-10 83.8 8.7 113 155-279 305-419 (456)
31 COG0531 PotE Amino acid transp 98.1 1.8E-05 3.8E-10 78.8 9.6 115 154-280 307-424 (466)
32 KOG1286|consensus 98.0 5.8E-06 1.3E-10 86.6 4.2 111 155-277 342-457 (554)
33 KOG1287|consensus 97.9 2.1E-05 4.5E-10 80.9 6.6 102 157-277 310-411 (479)
34 PF00324 AA_permease: Amino ac 97.6 4.1E-05 8.9E-10 77.8 4.2 113 156-279 311-428 (478)
35 TIGR03428 ureacarb_perm permea 97.4 0.00035 7.5E-09 71.2 6.7 111 154-276 318-437 (475)
36 COG1113 AnsP Gamma-aminobutyra 97.4 0.00035 7.5E-09 71.5 6.4 125 157-293 310-441 (462)
37 PRK15238 inner membrane transp 97.3 0.0014 3.1E-08 67.2 10.8 106 158-273 341-447 (496)
38 PF13520 AA_permease_2: Amino 97.2 8.2E-05 1.8E-09 73.7 0.0 109 154-277 293-401 (426)
39 COG0833 LysP Amino acid transp 96.9 0.00074 1.6E-08 70.4 4.2 110 158-279 350-464 (541)
40 PRK10866 outer membrane biogen 96.2 0.85 1.8E-05 43.0 19.0 148 31-181 31-206 (243)
41 KOG1840|consensus 95.9 0.41 8.9E-06 50.2 16.7 140 45-184 255-401 (508)
42 PF13525 YfiO: Outer membrane 95.5 0.72 1.6E-05 41.8 15.2 150 29-181 2-172 (203)
43 TIGR03302 OM_YfiO outer membra 95.2 2.3 5E-05 38.4 18.4 141 36-181 37-197 (235)
44 PRK11788 tetratricopeptide rep 94.7 4.3 9.4E-05 39.2 19.6 158 45-224 83-242 (389)
45 PF14938 SNAP: Soluble NSF att 94.3 1.8 3.9E-05 41.3 14.8 135 46-181 50-186 (282)
46 PRK11788 tetratricopeptide rep 94.2 5.7 0.00012 38.4 19.1 173 32-224 35-208 (389)
47 PF14938 SNAP: Soluble NSF att 93.4 1.5 3.3E-05 41.8 12.6 137 41-180 84-226 (282)
48 PF14559 TPR_19: Tetratricopep 93.4 0.1 2.2E-06 38.1 3.5 53 43-100 3-55 (68)
49 COG2956 Predicted N-acetylgluc 92.1 4.5 9.8E-05 40.6 13.8 171 46-229 84-282 (389)
50 PF13432 TPR_16: Tetratricopep 91.6 0.66 1.4E-05 33.6 6.0 50 44-98 10-59 (65)
51 PF13424 TPR_12: Tetratricopep 91.6 0.53 1.2E-05 35.4 5.6 57 44-100 18-76 (78)
52 TIGR02521 type_IV_pilW type IV 90.7 9.8 0.00021 32.5 16.5 123 43-180 43-165 (234)
53 KOG1840|consensus 90.6 4.7 0.0001 42.5 13.1 111 71-181 368-481 (508)
54 TIGR03302 OM_YfiO outer membra 90.1 9.4 0.0002 34.4 13.4 129 44-180 83-233 (235)
55 PF13176 TPR_7: Tetratricopept 89.8 0.68 1.5E-05 30.5 4.1 29 72-100 1-29 (36)
56 TIGR02917 PEP_TPR_lipo putativ 89.2 31 0.00067 36.1 18.1 59 36-99 26-85 (899)
57 TIGR02521 type_IV_pilW type IV 89.1 13 0.00029 31.7 17.5 121 44-179 78-198 (234)
58 TIGR00837 araaP aromatic amino 89.0 1.3 2.9E-05 43.5 7.4 26 244-271 355-380 (381)
59 PRK10803 tol-pal system protei 88.4 4 8.8E-05 39.1 10.0 66 33-100 142-210 (263)
60 TIGR00990 3a0801s09 mitochondr 87.7 21 0.00045 37.7 15.7 50 44-98 378-427 (615)
61 PF09976 TPR_21: Tetratricopep 87.5 9.1 0.0002 32.4 10.8 68 142-222 77-144 (145)
62 TIGR00990 3a0801s09 mitochondr 87.3 35 0.00076 36.0 17.1 26 154-179 437-462 (615)
63 PF13414 TPR_11: TPR repeat; P 86.9 1.4 3E-05 32.1 4.7 51 43-98 15-66 (69)
64 PLN03218 maturation of RBCL 1; 86.8 46 0.001 38.2 18.6 26 154-179 688-713 (1060)
65 PF03704 BTAD: Bacterial trans 86.3 4.1 8.8E-05 34.3 7.9 66 32-102 57-128 (146)
66 PRK10803 tol-pal system protei 86.2 2 4.4E-05 41.2 6.6 56 43-100 192-247 (263)
67 PF05297 Herpes_LMP1: Herpesvi 86.1 0.23 4.9E-06 48.6 0.0 60 174-242 12-71 (381)
68 TIGR02795 tol_pal_ybgF tol-pal 85.4 9.6 0.00021 29.7 9.2 55 43-99 14-68 (119)
69 PF13424 TPR_12: Tetratricopep 84.8 11 0.00023 28.1 8.8 66 70-136 5-72 (78)
70 PLN03218 maturation of RBCL 1; 84.5 79 0.0017 36.4 19.0 75 45-128 486-560 (1060)
71 PF09976 TPR_21: Tetratricopep 84.3 24 0.00052 29.8 12.6 120 43-174 23-142 (145)
72 COG4105 ComL DNA uptake lipopr 83.8 40 0.00086 32.6 14.0 143 36-181 38-198 (254)
73 PF04147 Nop14: Nop14-like fam 83.5 19 0.00041 40.2 13.4 89 93-182 428-527 (840)
74 PF13512 TPR_18: Tetratricopep 82.8 7.6 0.00017 34.2 8.1 69 35-106 13-82 (142)
75 cd00189 TPR Tetratricopeptide 82.6 14 0.0003 25.8 8.9 25 154-178 72-96 (100)
76 PF13429 TPR_15: Tetratricopep 82.6 23 0.00049 33.1 11.9 94 73-179 149-243 (280)
77 TIGR02917 PEP_TPR_lipo putativ 82.6 67 0.0014 33.6 17.9 26 154-179 673-698 (899)
78 PF10602 RPN7: 26S proteasome 81.3 24 0.00052 31.7 11.0 112 67-181 33-144 (177)
79 PF13371 TPR_9: Tetratricopept 81.1 5.4 0.00012 29.2 5.7 53 43-100 7-59 (73)
80 PRK10747 putative protoheme IX 81.0 28 0.00061 34.8 12.6 123 43-178 165-291 (398)
81 PF12895 Apc3: Anaphase-promot 80.2 2.9 6.3E-05 32.0 4.2 48 45-95 3-50 (84)
82 PRK10370 formate-dependent nit 80.0 7.4 0.00016 35.3 7.4 56 47-107 126-181 (198)
83 cd00189 TPR Tetratricopeptide 79.9 18 0.00038 25.2 8.1 52 44-100 13-64 (100)
84 PRK10049 pgaA outer membrane p 78.7 98 0.0021 33.9 16.7 30 153-184 396-425 (765)
85 COG1033 Predicted exporters of 78.6 16 0.00034 40.3 10.4 20 280-299 621-641 (727)
86 TIGR02795 tol_pal_ybgF tol-pal 77.4 31 0.00068 26.7 11.4 104 71-180 3-106 (119)
87 PF07719 TPR_2: Tetratricopept 77.3 6.3 0.00014 24.5 4.4 29 71-99 2-30 (34)
88 PF13174 TPR_6: Tetratricopept 77.2 4.1 8.9E-05 25.1 3.5 28 72-99 2-29 (33)
89 KOG0543|consensus 76.2 47 0.001 34.1 12.3 114 77-203 215-336 (397)
90 KOG4234|consensus 75.8 51 0.0011 31.4 11.6 120 49-179 74-197 (271)
91 PRK11447 cellulose synthase su 75.4 53 0.0012 37.7 14.0 125 43-179 281-414 (1157)
92 PLN03081 pentatricopeptide (PP 75.3 98 0.0021 33.2 15.3 22 75-96 264-285 (697)
93 cd05804 StaR_like StaR_like; a 74.8 79 0.0017 30.0 17.0 70 154-226 268-337 (355)
94 PF13181 TPR_8: Tetratricopept 74.1 8.9 0.00019 23.9 4.5 29 71-99 2-30 (34)
95 PRK10370 formate-dependent nit 73.6 71 0.0015 28.9 13.3 120 44-180 52-174 (198)
96 PRK11447 cellulose synthase su 73.6 63 0.0014 37.1 14.0 53 42-99 362-414 (1157)
97 PF03704 BTAD: Bacterial trans 73.0 54 0.0012 27.4 11.6 103 33-141 7-127 (146)
98 KOG1585|consensus 72.3 13 0.00028 36.2 6.9 57 39-95 118-175 (308)
99 PRK02603 photosystem I assembl 72.1 16 0.00034 31.8 7.1 66 33-100 36-102 (172)
100 KOG2300|consensus 71.1 1.5E+02 0.0033 31.7 17.1 145 73-227 326-476 (629)
101 TIGR02552 LcrH_SycD type III s 71.1 33 0.00071 27.8 8.4 52 44-100 30-81 (135)
102 PLN03081 pentatricopeptide (PP 69.4 1.6E+02 0.0034 31.6 15.3 116 44-177 272-387 (697)
103 PF13374 TPR_10: Tetratricopep 68.3 12 0.00026 24.0 4.2 31 71-101 3-33 (42)
104 PF04147 Nop14: Nop14-like fam 67.7 59 0.0013 36.4 11.8 67 50-120 427-499 (840)
105 PF00515 TPR_1: Tetratricopept 65.9 16 0.00036 22.8 4.4 29 71-99 2-30 (34)
106 TIGR02552 LcrH_SycD type III s 65.6 35 0.00075 27.7 7.5 53 43-100 63-115 (135)
107 PRK12370 invasion protein regu 65.3 1E+02 0.0022 32.3 12.6 26 154-179 445-470 (553)
108 PF12688 TPR_5: Tetratrico pep 65.1 26 0.00057 29.6 6.7 61 36-98 5-66 (120)
109 KOG1824|consensus 64.2 3 6.5E-05 46.8 0.9 17 11-27 327-345 (1233)
110 PLN03077 Protein ECB2; Provisi 64.0 1E+02 0.0022 34.0 12.7 48 43-98 335-382 (857)
111 PLN03088 SGT1, suppressor of 63.2 83 0.0018 31.2 10.9 62 41-108 12-73 (356)
112 PRK11189 lipoprotein NlpI; Pro 62.2 1.5E+02 0.0032 28.3 12.9 50 44-98 111-160 (296)
113 PF10274 ParcG: Parkin co-regu 61.9 19 0.00041 33.1 5.6 70 67-145 98-167 (183)
114 PLN03077 Protein ECB2; Provisi 61.3 2.6E+02 0.0056 30.8 16.9 145 44-223 437-616 (857)
115 COG1033 Predicted exporters of 60.3 27 0.00059 38.4 7.4 47 257-303 221-274 (727)
116 KOG0128|consensus 60.1 1.9E+02 0.0042 32.5 13.5 123 67-200 110-235 (881)
117 PF13429 TPR_15: Tetratricopep 60.0 1.5E+02 0.0032 27.6 13.0 154 42-224 88-242 (280)
118 PRK15359 type III secretion sy 60.0 19 0.00042 30.7 5.1 62 32-98 24-86 (144)
119 KOG2927|consensus 59.5 35 0.00077 34.5 7.4 29 308-336 263-294 (372)
120 PRK11189 lipoprotein NlpI; Pro 59.0 1.7E+02 0.0037 27.9 13.6 120 46-179 41-161 (296)
121 PF10446 DUF2457: Protein of u 58.9 5.9 0.00013 40.9 1.9 11 129-139 206-216 (458)
122 PF10579 Rapsyn_N: Rapsyn N-te 57.9 25 0.00055 28.2 5.0 46 46-93 21-66 (80)
123 PRK14574 hmsH outer membrane p 57.8 1.2E+02 0.0026 34.0 11.9 19 43-61 46-64 (822)
124 PF09986 DUF2225: Uncharacteri 57.2 29 0.00063 32.3 6.1 51 48-98 142-193 (214)
125 KOG2003|consensus 56.4 89 0.0019 33.1 9.8 121 49-176 294-445 (840)
126 PRK15363 pathogenicity island 56.0 1.2E+02 0.0026 27.1 9.6 107 31-142 34-155 (157)
127 PRK15359 type III secretion sy 56.0 57 0.0012 27.8 7.4 53 43-100 70-122 (144)
128 PRK09782 bacteriophage N4 rece 55.5 1E+02 0.0023 35.2 11.2 128 44-180 57-212 (987)
129 TIGR00540 hemY_coli hemY prote 54.5 2.3E+02 0.0051 28.2 12.7 124 43-180 165-293 (409)
130 TIGR00540 hemY_coli hemY prote 54.0 2.4E+02 0.0052 28.2 14.1 134 75-227 268-401 (409)
131 KOG1498|consensus 52.8 2.2E+02 0.0048 29.5 11.8 101 39-141 20-121 (439)
132 COG1729 Uncharacterized protei 52.8 1E+02 0.0022 29.9 9.2 63 33-97 142-205 (262)
133 PRK10049 pgaA outer membrane p 52.5 2.4E+02 0.0051 31.0 13.1 125 43-180 322-457 (765)
134 KOG1288|consensus 52.4 36 0.00078 37.6 6.5 107 156-282 394-505 (945)
135 PLN03098 LPA1 LOW PSII ACCUMUL 51.7 1.4E+02 0.003 31.3 10.4 54 44-99 88-141 (453)
136 TIGR00796 livcs branched-chain 51.4 26 0.00056 35.5 5.1 16 245-260 351-366 (378)
137 KOG1941|consensus 50.7 2E+02 0.0043 29.9 11.0 172 44-230 19-196 (518)
138 KOG0943|consensus 50.4 8 0.00017 44.7 1.4 6 329-334 2112-2117(3015)
139 PF10446 DUF2457: Protein of u 49.9 8.6 0.00019 39.7 1.4 11 174-184 227-237 (458)
140 PF10769 DUF2594: Protein of u 49.5 62 0.0013 25.5 5.7 53 90-143 19-71 (74)
141 KOG1289|consensus 49.4 31 0.00066 36.8 5.4 32 154-185 360-393 (550)
142 PF12895 Apc3: Anaphase-promot 48.3 28 0.0006 26.4 3.8 51 39-95 32-83 (84)
143 PF14812 PBP1_TM: Transmembran 47.9 6.1 0.00013 31.7 0.0 7 18-24 37-43 (81)
144 PRK15174 Vi polysaccharide exp 47.0 3.4E+02 0.0073 29.3 13.0 27 153-179 355-381 (656)
145 COG2149 Predicted membrane pro 46.7 43 0.00094 28.8 4.9 28 145-172 22-50 (120)
146 PLN03088 SGT1, suppressor of 46.4 49 0.0011 32.8 6.2 53 43-100 48-100 (356)
147 PF04716 ETC_C1_NDUFA5: ETC co 45.5 68 0.0015 23.9 5.3 45 87-131 5-53 (57)
148 CHL00033 ycf3 photosystem I as 45.3 77 0.0017 27.2 6.6 52 45-98 49-100 (168)
149 PRK10613 hypothetical protein; 45.2 69 0.0015 25.2 5.4 53 90-143 19-71 (74)
150 PF09295 ChAPs: ChAPs (Chs5p-A 44.9 3.6E+02 0.0078 27.6 12.6 110 46-176 184-294 (395)
151 KOG2076|consensus 44.9 65 0.0014 36.2 7.2 21 130-150 543-563 (895)
152 PRK09782 bacteriophage N4 rece 44.1 3.8E+02 0.0082 30.8 13.3 117 45-179 590-706 (987)
153 PF13428 TPR_14: Tetratricopep 43.9 48 0.001 22.3 4.1 28 72-99 3-30 (44)
154 PRK12370 invasion protein regu 43.7 4.1E+02 0.0088 27.8 15.6 150 45-222 318-467 (553)
155 KOG2076|consensus 43.6 3.4E+02 0.0074 30.8 12.3 73 45-123 221-293 (895)
156 PF12569 NARP1: NMDA receptor- 43.4 2.7E+02 0.0058 29.6 11.3 133 44-183 17-156 (517)
157 PF01535 PPR: PPR repeat; Int 42.1 42 0.0009 20.0 3.2 25 74-98 4-28 (31)
158 PF14007 YtpI: YtpI-like prote 40.9 2E+02 0.0043 23.5 8.3 25 278-302 54-82 (89)
159 KOG2002|consensus 40.8 68 0.0015 36.4 6.6 132 30-176 604-742 (1018)
160 PF03115 Astro_capsid: Astrovi 40.7 9.2 0.0002 42.4 0.0 10 132-141 761-770 (787)
161 PF12169 DNA_pol3_gamma3: DNA 38.9 1.7E+02 0.0038 24.4 7.6 108 31-158 14-129 (143)
162 TIGR00756 PPR pentatricopeptid 38.6 53 0.0011 19.7 3.4 26 73-98 3-28 (35)
163 KOG4346|consensus 38.4 1.9E+02 0.0041 32.1 9.2 112 2-121 467-580 (849)
164 KOG0545|consensus 38.4 2E+02 0.0043 28.4 8.5 88 72-159 180-278 (329)
165 smart00028 TPR Tetratricopepti 38.3 66 0.0014 17.6 3.6 27 72-98 3-29 (34)
166 TIGR03504 FimV_Cterm FimV C-te 37.1 54 0.0012 23.1 3.5 39 75-114 4-42 (44)
167 PRK15174 Vi polysaccharide exp 35.9 5.9E+02 0.013 27.4 16.8 53 42-98 188-240 (656)
168 PF13414 TPR_11: TPR repeat; P 35.8 61 0.0013 23.2 3.8 29 72-100 5-33 (69)
169 KOG4626|consensus 35.6 2.8E+02 0.0061 30.8 9.9 56 40-100 328-384 (966)
170 KOG1126|consensus 34.8 3.9E+02 0.0085 29.2 10.9 125 71-220 490-615 (638)
171 KOG1586|consensus 34.8 2.8E+02 0.0061 27.1 8.9 89 31-120 72-164 (288)
172 PF13812 PPR_3: Pentatricopept 34.7 94 0.002 18.8 4.1 26 73-98 4-29 (34)
173 PF11817 Foie-gras_1: Foie gra 34.2 2.5E+02 0.0054 26.3 8.6 56 130-185 155-213 (247)
174 PF14150 YesK: YesK-like prote 32.9 64 0.0014 25.9 3.7 14 243-256 17-30 (81)
175 PF13041 PPR_2: PPR repeat fam 32.8 64 0.0014 22.1 3.3 25 74-98 7-31 (50)
176 PF05843 Suf: Suppressor of fo 32.8 2.4E+02 0.0051 26.9 8.3 90 44-142 49-139 (280)
177 PF06709 DUF1196: Protein of u 32.4 61 0.0013 23.4 3.1 33 264-303 3-35 (51)
178 PF11207 DUF2989: Protein of u 32.3 54 0.0012 30.7 3.6 57 32-89 141-197 (203)
179 KOG1464|consensus 31.6 1.1E+02 0.0024 30.5 5.8 80 78-162 199-284 (440)
180 cd00126 PAH Pancreatic Hormone 29.4 52 0.0011 22.5 2.2 21 85-106 13-33 (36)
181 PF05764 YL1: YL1 nuclear prot 28.8 37 0.00081 32.1 2.0 13 208-220 198-210 (240)
182 TIGR03504 FimV_Cterm FimV C-te 28.7 43 0.00094 23.6 1.8 27 153-179 2-28 (44)
183 PF00159 Hormone_3: Pancreatic 28.5 53 0.0011 22.5 2.1 22 85-107 13-34 (36)
184 cd05804 StaR_like StaR_like; a 28.3 5.1E+02 0.011 24.4 14.0 63 153-223 151-213 (355)
185 COG3629 DnrI DNA-binding trans 28.1 3.3E+02 0.0072 26.7 8.4 42 66-108 149-190 (280)
186 KOG2003|consensus 28.0 80 0.0017 33.5 4.3 120 47-178 217-337 (840)
187 PRK15179 Vi polysaccharide bio 27.8 8.5E+02 0.018 26.8 14.2 97 70-178 86-182 (694)
188 smart00309 PAH Pancreatic horm 27.5 60 0.0013 22.2 2.3 21 85-106 13-33 (36)
189 KOG0543|consensus 27.3 2.7E+02 0.0059 28.7 7.9 54 42-100 268-321 (397)
190 PF04675 DNA_ligase_A_N: DNA l 27.3 4.2E+02 0.009 23.0 10.6 70 80-150 84-154 (177)
191 COG3086 RseC Positive regulato 27.0 99 0.0021 27.6 4.2 34 261-294 81-115 (150)
192 PF04546 Sigma70_ner: Sigma-70 26.9 34 0.00073 31.5 1.3 18 42-59 72-89 (211)
193 KOG2124|consensus 26.9 9.1E+02 0.02 27.5 12.2 47 112-158 393-440 (883)
194 PF03176 MMPL: MMPL family; I 26.6 1.3E+02 0.0029 28.9 5.5 12 256-267 167-178 (333)
195 PF12688 TPR_5: Tetratrico pep 26.5 3.9E+02 0.0085 22.5 8.3 96 72-173 3-98 (120)
196 KOG1824|consensus 26.2 72 0.0016 36.5 3.8 28 91-118 427-454 (1233)
197 PF10366 Vps39_1: Vacuolar sor 26.1 1.2E+02 0.0026 25.1 4.4 53 73-125 42-94 (108)
198 PTZ00415 transmission-blocking 25.8 35 0.00077 41.1 1.5 6 312-317 570-575 (2849)
199 PF14798 Ca_hom_mod: Calcium h 25.7 2.9E+02 0.0064 26.5 7.5 17 279-295 100-116 (251)
200 KOG2274|consensus 25.1 32 0.0007 38.7 1.0 19 17-35 943-961 (1005)
201 PF12825 DUF3818: Domain of un 25.1 6.3E+02 0.014 25.3 10.0 107 63-180 201-319 (341)
202 PF12854 PPR_1: PPR repeat 24.4 84 0.0018 20.3 2.6 24 73-96 10-33 (34)
203 TIGR00845 caca sodium/calcium 24.3 2.9E+02 0.0063 31.6 8.1 75 166-248 799-885 (928)
204 KOG4555|consensus 24.2 2.5E+02 0.0054 25.2 6.1 49 46-99 58-106 (175)
205 KOG1306|consensus 23.6 51 0.0011 34.9 2.0 54 219-274 528-581 (596)
206 KOG2114|consensus 23.4 3.4E+02 0.0074 30.7 8.2 51 71-121 369-421 (933)
207 KOG0553|consensus 22.8 5.8E+02 0.013 25.4 9.0 90 73-176 84-175 (304)
208 TIGR03480 HpnN hopanoid biosyn 22.8 1.8E+02 0.0039 32.4 6.2 44 256-299 293-342 (862)
209 PF07301 DUF1453: Protein of u 22.8 2.6E+02 0.0056 24.9 6.0 43 262-304 34-81 (148)
210 COG4420 Predicted membrane pro 22.3 1.7E+02 0.0036 27.2 4.9 30 214-243 50-79 (191)
211 PF14853 Fis1_TPR_C: Fis1 C-te 22.2 3.2E+02 0.0068 19.9 6.1 43 72-118 3-45 (53)
212 PF13431 TPR_17: Tetratricopep 22.0 78 0.0017 20.5 2.0 32 54-90 2-33 (34)
213 TIGR03486 cas_csx13_C CRISPR-a 21.7 4.1E+02 0.0088 23.9 7.0 60 64-123 48-115 (152)
214 PRK02603 photosystem I assembl 21.3 2E+02 0.0044 24.8 5.2 53 43-100 84-143 (172)
215 KOG0548|consensus 21.0 6.6E+02 0.014 27.0 9.5 91 77-179 365-455 (539)
216 KOG2082|consensus 20.6 3.6E+02 0.0079 30.5 7.7 31 261-294 607-637 (1075)
217 COG2364 Predicted membrane pro 20.5 6.1E+02 0.013 23.9 8.2 60 229-295 55-114 (210)
218 PF14782 BBS2_C: Ciliary BBSom 20.2 2.9E+02 0.0063 28.7 6.7 67 83-149 350-427 (431)
219 PF05680 ATP-synt_E: ATP synth 20.2 62 0.0013 26.1 1.5 22 280-301 5-29 (86)
No 1
>KOG1464|consensus
Probab=100.00 E-value=1.9e-91 Score=658.99 Aligned_cols=279 Identities=89% Similarity=1.360 Sum_probs=272.5
Q ss_pred cccccccccccccccCCCCCCCccchhhhhhccccccccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcC
Q psy3481 6 DTFMCDEEEDYGLEYSEDSNSEPDVDLENQYYNSKALKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSN 85 (340)
Q Consensus 6 d~~~~d~~e~y~~~~~~~~~~~~~~~lEn~y~~ak~~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~ 85 (340)
|||| ||||||||||+||+++||||||||||||+|++++++|++|+.+|++|++++ +|+|+||||||||||||+|++++
T Consensus 3 D~~M-dddEDYg~EYsdds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelE-gEKgeWGFKALKQmiKI~f~l~~ 80 (440)
T KOG1464|consen 3 DDFM-DDDEDYGFEYSDDSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELE-GEKGEWGFKALKQMIKINFRLGN 80 (440)
T ss_pred cccc-ccchhcCceeccccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcc-cccchhHHHHHHHHHHHHhcccc
Confidence 4788 456999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccc
Q psy3481 86 YKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDRED 165 (340)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~ 165 (340)
|++||++|+|+++||+|+|||||+||+||+|+||+|+|++++++|.||++|+++|++|+|+||||||||||+++||+.++
T Consensus 81 ~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e 160 (440)
T KOG1464|consen 81 YKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGE 160 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhhhe
Q psy3481 166 FNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRGLFVIE 245 (340)
Q Consensus 166 ~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~~~vv~~~lIil 245 (340)
++.+.+++.++|..|+|.++.+|+++|++|+||+++|||||+.++|+++++++|.++..+.++++||++++++.
T Consensus 161 ~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIR------ 234 (440)
T KOG1464|consen 161 YTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIR------ 234 (440)
T ss_pred HHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997765
Q ss_pred ecccCCCCCcccccccchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHhhhccCCCCC
Q psy3481 246 AHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALECGGKMHLREGEFEKAHTDFFEAFKNYDESGS 325 (340)
Q Consensus 246 R~~~p~~~r~FrvPlvP~iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG~YG~rhS~~~~~~~~~~~F~eaF~~yde~g~ 325 (340)
-|.|..|-+.|++..+|++||||||||||+|+
T Consensus 235 ------------------------------------------------ECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs 266 (440)
T KOG1464|consen 235 ------------------------------------------------ECGGKMHLREGEFEKAHTDFFEAFKNYDESGS 266 (440)
T ss_pred ------------------------------------------------HcCCccccccchHHHHHhHHHHHHhcccccCC
Confidence 46899999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcC
Q psy3481 326 PRRTTCLKYLVLANM 340 (340)
Q Consensus 326 ~~~~~~LKYl~L~~~ 340 (340)
|||++||||||||||
T Consensus 267 pRRttCLKYLVLANM 281 (440)
T KOG1464|consen 267 PRRTTCLKYLVLANM 281 (440)
T ss_pred cchhHHHHHHHHHHH
Confidence 999999999999998
No 2
>KOG1463|consensus
Probab=100.00 E-value=3.1e-35 Score=283.33 Aligned_cols=242 Identities=22% Similarity=0.323 Sum_probs=214.1
Q ss_pred hccccccccCCH-HHHHHHHHhhcccc----c-ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhH
Q psy3481 36 YYNSKALKEDDP-KAALQSFQKVLDLE----S-GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYS 109 (340)
Q Consensus 36 y~~ak~~~~~~~-~~a~~~~~~v~~~~----~-~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~ 109 (340)
+.++..+.+.++ ++++..|+.|++.- + ++..+.++.++-++.+++.+.|+++++.++++++|||+ +.|+|+++
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~-~~v~Kaka 86 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFL-SSVSKAKA 86 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-HHhhhHHH
Confidence 456667777776 89999999999841 1 35677888999999999999999999999999999999 89999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc-cchhhhHh--HHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCc
Q psy3481 110 EKSINSILDYISTSKNMELLQDFYETTLEALKDA-KNDRLWFK--TNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGE 186 (340)
Q Consensus 110 ~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~-~~~rlf~k--~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a 186 (340)
+|+||+++|.+..+++.. +.++++|.+||+|| +++|.|+| .++||+++|++.++|..+.+.++.+..++|..+
T Consensus 87 aKlvR~Lvd~~~~~~~~~--~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlD-- 162 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGT--GDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLD-- 162 (411)
T ss_pred HHHHHHHHHHHccCCCCc--chHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--
Confidence 999999999999887544 35899999999999 56999999 569999999999999999999999999999887
Q ss_pred cccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhhheecccCCCCCcccccccchhhH
Q psy3481 187 DDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPG 266 (340)
Q Consensus 187 ~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~~~vv~~~lIilR~~~p~~~r~FrvPlvP~iP~ 266 (340)
| +.+|+||..+|++.|++++|+++.+++++.+++.++++.+|.-.-.
T Consensus 163 -D---K~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa----------------------------- 209 (411)
T KOG1463|consen 163 -D---KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQA----------------------------- 209 (411)
T ss_pred -c---ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHH-----------------------------
Confidence 5 8999999999999999999999999999999999998875543200
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH-hhhhhcccccccccchhHHHhhhccCCCCC-cchHHHHHHHHHhcC
Q psy3481 267 LSIFFNIELMANLNVLTWLRFIIWMALEC-GGKMHLREGEFEKAHTDFFEAFKNYDESGS-PRRTTCLKYLVLANM 340 (340)
Q Consensus 267 l~il~~l~L~~~L~~~tw~~~~vW~~iG~-YG~rhS~~~~~~~~~~~F~eaF~~yde~g~-~~~~~~LKYl~L~~~ 340 (340)
+ +-+ .|+.|+..+.+++++++||||||+|+..|+ ++++++||||+||++
T Consensus 210 -----------~--------------lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKI 260 (411)
T KOG1463|consen 210 -----------T--------------LDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKI 260 (411)
T ss_pred -----------H--------------HHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHH
Confidence 0 012 799999999999999999999999999987 599999999999984
No 3
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-26 Score=220.29 Aligned_cols=238 Identities=17% Similarity=0.274 Sum_probs=209.6
Q ss_pred ccccCCHHHHHHHHHhhccccc---ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHH
Q psy3481 41 ALKEDDPKAALQSFQKVLDLES---GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSIL 117 (340)
Q Consensus 41 ~~~~~~~~~a~~~~~~v~~~~~---~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~il 117 (340)
+.++.+-++|++.|.+|+.... +...+.++.++-.+.++|...|++..+.+.++++++++ ..++|+++.|+||+++
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m-~~ftk~k~~KiirtLi 91 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAM-EDFTKPKITKIIRTLI 91 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHH-HHhcchhHHHHHHHHH
Confidence 3566677999999999998854 24568899999999999999999999999999999999 8999999999999999
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHhhc-cchhhhHh--HHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccc
Q psy3481 118 DYISTSKNMELLQDFYETTLEALKDA-KNDRLWFK--TNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQ 194 (340)
Q Consensus 118 d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~rlf~k--~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~l 194 (340)
+.|..+++ -+..++.+|-.+++|| +++|.|+| .++||+.++|..+.|....+.++.+..++|.-+ | +..
T Consensus 92 ekf~~~~d--sl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D---D---K~~ 163 (421)
T COG5159 92 EKFPYSSD--SLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD---D---KIN 163 (421)
T ss_pred HhcCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc---C---ccc
Confidence 99997764 3456899999999999 56999999 569999999999999999999999999999877 4 889
Q ss_pred hhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhhheecccCCCCCcccccccchhhHHHHHHHHH
Q psy3481 195 LLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIE 274 (340)
Q Consensus 195 lleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~~~vv~~~lIilR~~~p~~~r~FrvPlvP~iP~l~il~~l~ 274 (340)
+++|+.+|+++|++++|+++.++.++.+++.++++.+|.-.-
T Consensus 164 Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlq-------------------------------------- 205 (421)
T COG5159 164 LITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQ-------------------------------------- 205 (421)
T ss_pred eeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHH--------------------------------------
Confidence 999999999999999999999999999999999887554320
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHhhhccCCC-CCcchHHHHHHHHHhcC
Q psy3481 275 LMANLNVLTWLRFIIWMALECGGKMHLREGEFEKAHTDFFEAFKNYDES-GSPRRTTCLKYLVLANM 340 (340)
Q Consensus 275 L~~~L~~~tw~~~~vW~~iG~YG~rhS~~~~~~~~~~~F~eaF~~yde~-g~~~~~~~LKYl~L~~~ 340 (340)
.+++. ..|+.|...+.++++.++|+|||++|... .+.++.++||||+|+++
T Consensus 206 --a~lDL-------------~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkI 257 (421)
T COG5159 206 --AQLDL-------------LSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKI 257 (421)
T ss_pred --HHHHH-------------hccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 11110 37999999999999999999999999986 45789999999999873
No 4
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.79 E-value=1.9e-19 Score=186.74 Aligned_cols=60 Identities=52% Similarity=0.821 Sum_probs=53.4
Q ss_pred heecccCCCCCcccccccchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-----hhhhhccc
Q psy3481 244 IEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALEC-----GGKMHLRE 303 (340)
Q Consensus 244 ilR~~~p~~~r~FrvPlvP~iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG~-----YG~rhS~~ 303 (340)
+.|++|...+|+||||++|++|++|+++|+|||.+|+..+|+++++|+++|+ ||+|||++
T Consensus 493 ~~~~~~~~~~~~f~~p~~p~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~ 557 (557)
T TIGR00906 493 IWRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE 557 (557)
T ss_pred HhcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence 3444444458999999999999999999999999999999999999999995 89999974
No 5
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=99.59 E-value=1e-15 Score=111.62 Aligned_cols=46 Identities=61% Similarity=1.050 Sum_probs=44.8
Q ss_pred ccccccchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-----hhhhhc
Q psy3481 256 FKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALEC-----GGKMHL 301 (340)
Q Consensus 256 FrvPlvP~iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG~-----YG~rhS 301 (340)
||||++|++|++++++|+|||.+|+..+|+++++|+++|+ ||+|||
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence 8999999999999999999999999999999999999995 899998
No 6
>TIGR00909 2A0306 amino acid transporter.
Probab=99.24 E-value=2e-11 Score=121.41 Aligned_cols=125 Identities=20% Similarity=0.248 Sum_probs=95.7
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHH
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPL 233 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~ 233 (340)
..-.|+.++|+|++.+|++++++|||++||+. +.++..++++-. .. ..+ +.... ..+++..++
T Consensus 299 ~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~------a~~~~~~i~~~~-~~--~~~-------~~~l~-~~~~~~~~~ 361 (429)
T TIGR00909 299 YGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHM------SIIIFSLTAALL-AS--LVP-------LEGLA-ELTSIGTLI 361 (429)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHH------HHHHHHHHHHHH-HH--HcC-------HHHHH-HHHHHHHHH
Confidence 34667999999999999999999999999994 333333333211 00 011 11111 123455566
Q ss_pred HHHHHHHHhhheecccCCCCCcccccccchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy3481 234 IMGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALEC 295 (340)
Q Consensus 234 ~~~vv~~~lIilR~~~p~~~r~FrvPlvP~iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG~ 295 (340)
.+.+++++++++|+++|+.+|+||+|..|++|+++++.|++++...++.++...++|+++|+
T Consensus 362 ~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 423 (429)
T TIGR00909 362 AFAAVNVAVIILRRRRPDIQRAFRCPLVPVLPVLVVSYCIYLLLNLGPGTTVWFLVWMLLGS 423 (429)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCcchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 67777788888899999999999999999999999999999999999999999999999996
No 7
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.21 E-value=3.6e-11 Score=120.64 Aligned_cols=121 Identities=12% Similarity=0.060 Sum_probs=82.0
Q ss_pred HHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHHHH
Q psy3481 157 GKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMG 236 (340)
Q Consensus 157 ~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~~~ 236 (340)
.|+.|+|+|++.+|++++++|||++||+.+ .++..+.++-+ .-..+...+. . ..++...+.+.
T Consensus 304 sR~~~a~ardg~lp~~~~~v~~~~~tP~~a------~l~~~~~~~~~---~~~~~~~~l~-------~-~~~~~~~~~~~ 366 (445)
T PRK11357 304 PRLEYAMAKDNLFFKCFGHVHPKYNTPDVS------IILQGALGIFF---IFVSDLTSLL-------G-YFTLVMCFKNT 366 (445)
T ss_pred hhHHHHHHhcCCchHHHHHhCCCCCCCHHH------HHHHHHHHHHH---HHHcCHHHHH-------H-HHHHHHHHHHH
Confidence 679999999999999999999999999954 33333333211 1111111111 1 12222233344
Q ss_pred HHHHHhhheecccCCCCCcccccccchhhHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHH
Q psy3481 237 VIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANL----NVLTWLRFIIWMALEC 295 (340)
Q Consensus 237 vv~~~lIilR~~~p~~~r~FrvPlvP~iP~l~il~~l~L~~~L----~~~tw~~~~vW~~iG~ 295 (340)
+...+++.+|+++ +.+|+||+|+.|++|+++++.++++++.. +..+|...++|+++|+
T Consensus 367 ~~~~a~i~lr~~~-~~~~~~k~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 428 (445)
T PRK11357 367 LTFGSIIWCRKRD-DYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGL 428 (445)
T ss_pred HHHHHHheeecCC-CCCCCcccCCchHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhh
Confidence 4445667777665 45789999999999999999999887543 5567778888998885
No 8
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.13 E-value=1.3e-10 Score=116.34 Aligned_cols=121 Identities=6% Similarity=0.018 Sum_probs=82.7
Q ss_pred HHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHH
Q psy3481 155 KLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLI 234 (340)
Q Consensus 155 kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~ 234 (340)
.-.|+.|+|+|++.+|++++++| +.+||+.+ .++..+.++-. .+ .++.. . ....+++...+.
T Consensus 298 ~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~A------il~~~~i~~~~-~l--~~~~~-------~-l~~~~~~~~~~~ 359 (442)
T TIGR00908 298 GYSRQIFALSRAGYLPESLSKVN-RKKAPVLA------IVVPGVIGFGL-SL--TGQTA-------L-IILVSVFGAIIS 359 (442)
T ss_pred HHHHHHHHHHhcCCccHHHHHhC-CCCCcHHH------HHHHHHHHHHH-HH--hccHH-------H-HHHHHHHHHHHH
Confidence 45689999999999999999999 99999953 33333333211 11 11111 0 011234455566
Q ss_pred HHHHHHHhhheecccCCCCCcccccccchhhHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q psy3481 235 MGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANL---NVLTWLRFIIWMAL 293 (340)
Q Consensus 235 ~~vv~~~lIilR~~~p~~~r~FrvPlvP~iP~l~il~~l~L~~~L---~~~tw~~~~vW~~i 293 (340)
+.+++++++.+|+++|+.+||||+|+.|++|+++++.|++++... ++..|...+++.++
T Consensus 360 y~~~~~a~i~lr~~~p~~~rp~~~p~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 421 (442)
T TIGR00908 360 YVLSMAAHFTLRIRRPDMERPYRTPGGILTPGVALVLACVALVTGFYVDPRVVVGAVAIFVV 421 (442)
T ss_pred HHHHHHHHHHHHhcCCCCCCCccCCCcchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 677777888899999999999999999999999999998776643 44455544444433
No 9
>PRK10655 potE putrescine transporter; Provisional
Probab=98.93 E-value=3.8e-09 Score=105.75 Aligned_cols=137 Identities=11% Similarity=0.102 Sum_probs=92.5
Q ss_pred HHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHH
Q psy3481 155 KLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLI 234 (340)
Q Consensus 155 kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~ 234 (340)
.-.|++|+|+|++.+|++++++| +.+||+.+ .++..+...-+-... .. ......+..... ..++...+.
T Consensus 294 ~~sR~~~~~a~dg~lP~~~~~v~-~~~tP~~a------ll~~~~i~~~l~l~~-~~--~~~~~~~~~l~~-~~~~~~~i~ 362 (438)
T PRK10655 294 TIAQVFKSSADEGYFPKIFSRVT-KVDAPVQG------MLIIVVIQSLLSLMT-IS--PSLNSQFNVLVN-LAVVTNIIP 362 (438)
T ss_pred HHHHHHHHHhcCCchhHHHHhhC-cCCCCHHH------HHHHHHHHHHHHHHH-hC--ccHHHHHHHHHH-HHHHHHHHH
Confidence 44679999999999999999999 56999953 333333222111111 00 001112222222 234455556
Q ss_pred HHHHHHHhhheecccCCCCCcccccccchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--hhhhhcccc
Q psy3481 235 MGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALEC--GGKMHLREG 304 (340)
Q Consensus 235 ~~vv~~~lIilR~~~p~~~r~FrvPlvP~iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG~--YG~rhS~~~ 304 (340)
+.++..+++.+|+++|+.+|+||+| |++|+++.+.|++++.+.+..++....+|+++|+ |+..+.+.+
T Consensus 363 y~~~~~~~~~lr~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (438)
T PRK10655 363 YILSMAALVIIQKVANVPPSKAKVA--NFIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLYGLISPRFE 432 (438)
T ss_pred HHHHHHHHHHHHhhCCCCcchhHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6677777888888888888999986 6899999999999988888878888899999995 766554443
No 10
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.78 E-value=1.4e-08 Score=103.63 Aligned_cols=123 Identities=15% Similarity=0.103 Sum_probs=81.5
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHH
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPL 233 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~ 233 (340)
.--.|+.++|+|++.+|+.++++||+.+||..+ .++..+.++ ++...++ .+.. .. .+++...+
T Consensus 338 ~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~a------ll~~~~i~~---l~~~~~~------~~~l-~~-~~~~~~~i 400 (501)
T TIGR00911 338 FSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPS------LLIVCTLTL---LMLFSGD------IYSL-IN-LISFANWL 400 (501)
T ss_pred HHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHH------HHHHHHHHH---HHHccCC------HHHH-HH-HHHHHHHH
Confidence 345679999999999999999999999999853 333333222 1111111 1111 11 23344455
Q ss_pred HHHHHHHHhhheecccCCCCCcccccccchhhHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHH
Q psy3481 234 IMGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMAN---LNVLTWLRFIIWMALEC 295 (340)
Q Consensus 234 ~~~vv~~~lIilR~~~p~~~r~FrvPlvP~iP~l~il~~l~L~~~---L~~~tw~~~~vW~~iG~ 295 (340)
.+.++.++++++|+++|+.+||||+|. +.|.++++.|++++.. .++.......+|+++|+
T Consensus 401 ~y~l~~~a~i~lR~~~p~~~rp~r~p~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 463 (501)
T TIGR00911 401 FNALAVAGLLWLRYKRPEMNRPIKVPL--FFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGV 463 (501)
T ss_pred HHHHHHHHHHheeccCCCCCCCccCch--HHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHH
Confidence 666677788889999999999999997 5777888777776642 24444455566777774
No 11
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.78 E-value=2.7e-08 Score=100.12 Aligned_cols=127 Identities=9% Similarity=0.003 Sum_probs=85.1
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHH
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPL 233 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~ 233 (340)
+--.|+.++|+|++.+|++++++|+ .+||.. +.++..++++-+ ....+.. .....+....+ .+++..++
T Consensus 295 ~~~sr~~~a~ardg~lP~~~~~v~~-~~tP~~------Ai~~~~~i~~l~-~l~~~~~--~~~~~~~~l~~-~~~~~~li 363 (445)
T PRK10644 295 LLAGQTAKAAADDGLFPPIFARVNK-AGTPVA------GLLIVGVLMTIF-QLSSISP--NASKEFGLVSS-VSVIFTLV 363 (445)
T ss_pred HHHHHHHHHHHhCCCccHHHHhhCc-CCCCHH------HHHHHHHHHHHH-HHHHHcc--chHHHHHHHHH-HHHHHHHH
Confidence 3456789999999999999999996 699985 333444333211 1111100 00111222112 23444556
Q ss_pred HHHHHHHHhhheecccCCCCCcccccccchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy3481 234 IMGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALEC 295 (340)
Q Consensus 234 ~~~vv~~~lIilR~~~p~~~r~FrvPlvP~iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG~ 295 (340)
.+.+++.+++++|+++++ ++.|+.|++|+++++.|++++...+..++...++|+++|+
T Consensus 364 ~y~~~~~~~~~l~~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (445)
T PRK10644 364 PYLYTCAALLLLGHGHFG----KARPAYLAVTLIAFVYCIWAVVGSGAKEVMWSFVTLMVIT 421 (445)
T ss_pred HHHHHHHHHHHHhhcCCc----ccccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 666777777777777653 4457899999999999999999988888888888888875
No 12
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.73 E-value=2.4e-08 Score=101.31 Aligned_cols=129 Identities=11% Similarity=0.091 Sum_probs=79.0
Q ss_pred HHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHH
Q psy3481 155 KLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLI 234 (340)
Q Consensus 155 kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~ 234 (340)
.-.|+.|+|+|++.+|++++++|+ .+||+.+ . ++.....-+-+.... ..-...+.... ..+++..++.
T Consensus 311 ~~sR~l~a~ardg~lP~~f~~~~~-~~~P~~A------i-l~~~~~~~l~~~~~~---~~~~~~~~~l~-~l~~~~~li~ 378 (471)
T PRK11387 311 ASGRMLWSLSNEGTLPACFARLTK-RGIPLTA------L-SVSMLGGLLALFSSV---VAPDTVFVALS-AISGFAVVAV 378 (471)
T ss_pred HhhHHHHHHHhcCCcCHHHHHhCC-CCCcHHH------H-HHHHHHHHHHHHHHh---cCHHHHHHHHH-HHHHHHHHHH
Confidence 456799999999999999999995 6999854 2 222111111111100 00011121111 1234455556
Q ss_pred HHHHHHHhhheecccCC-----CCCcccccccchhhHHHHHHHHHHHhcCCHHHH-----HHHHHHHHHHH
Q psy3481 235 MGVIRGLFVIEAHEQNM-----EGLRFKVPLVPFVPGLSIFFNIELMANLNVLTW-----LRFIIWMALEC 295 (340)
Q Consensus 235 ~~vv~~~lIilR~~~p~-----~~r~FrvPlvP~iP~l~il~~l~L~~~L~~~tw-----~~~~vW~~iG~ 295 (340)
+..++++++++|+++|+ .+||||+|++|++|.++++.|++++..+....+ ...++|+++|+
T Consensus 379 y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (471)
T PRK11387 379 WLSICASHFMFRRRHLRDGKALSELAYRAPWYPLTPILGFVLCLLACVGLAFDPSQRIALWCGIPFVALCY 449 (471)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCccCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 66677777777777653 358999999999999999999988875543333 33444555554
No 13
>PRK10836 lysine transporter; Provisional
Probab=98.72 E-value=3.7e-08 Score=100.60 Aligned_cols=116 Identities=12% Similarity=0.043 Sum_probs=74.6
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHH
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPL 233 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~ 233 (340)
.--.|+.|+|+|++.+|++++++|+ .+||+.+ .++..+.++-.-+....++ ...+....+ .+++..++
T Consensus 317 ~~~sR~l~a~Ardg~lP~~~~kv~~-~~~P~~A------ll~~~~~~~l~~l~~~~~~----~~~~~~l~~-~~~~~~~~ 384 (489)
T PRK10836 317 YASTRMLYTLACDGKAPRIFAKLSR-GGVPRNA------LYATTVIAGLCFLTSMFGN----QTVYLWLLN-TSGMTGFI 384 (489)
T ss_pred HHHHHHHHHHHcCCCcCHHHHhhCC-CCCcHHH------HHHHHHHHHHHHHHHccCH----HHHHHHHHH-HHHHHHHH
Confidence 3466799999999999999999994 6999853 3333333321111111110 011111111 12344455
Q ss_pred HHHHHHHHhhheecc----cCCCC-CcccccccchhhHHHHHHHHHHHhcCCH
Q psy3481 234 IMGVIRGLFVIEAHE----QNMEG-LRFKVPLVPFVPGLSIFFNIELMANLNV 281 (340)
Q Consensus 234 ~~~vv~~~lIilR~~----~p~~~-r~FrvPlvP~iP~l~il~~l~L~~~L~~ 281 (340)
.+.++..+++.+|++ .|+.+ ||||+|++|++|+++++.|++++.....
T Consensus 385 ~y~~~~~a~l~~R~~~~~~~~~~~~~p~~~p~~p~~~~~~~~~~~~~~~~~~~ 437 (489)
T PRK10836 385 AWLGIAISHYRFRRGYVLQGHDLNDLPYRSGFFPLGPIFAFVLCLIITLGQNY 437 (489)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 566666677777775 46654 7999999999999999999998885443
No 14
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.71 E-value=5.6e-08 Score=98.73 Aligned_cols=134 Identities=11% Similarity=0.039 Sum_probs=89.4
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHH
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPL 233 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~ 233 (340)
..-.|+.|+|+|++.+|++++++|++ +||+.+ .++..+.+.-+.+..-. ....+....+ .+++..++
T Consensus 303 ~~~sR~~~amardg~lP~~~~~v~~~-~tP~~A------i~~~~~i~~~~~~~~~~-----~~~~~~~l~~-~~~~~~~i 369 (473)
T TIGR00905 303 MLAAEVPFSAAKDGLFPKIFGRVNKN-GAPSVA------LLLTNILIQLFLLLTLL-----TSSAYNVLVS-LAVVMILV 369 (473)
T ss_pred HHHHHHHHHHHhCCChhHHHHhhCcc-CCCHHH------HHHHHHHHHHHHHHHHc-----cHHHHHHHHH-HHHHHHHH
Confidence 44567999999999999999999987 999953 33333332211111100 0112222222 24455566
Q ss_pred HHHHHHHHhhheecccCCCCCcccccccchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--hhhhhcc
Q psy3481 234 IMGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALEC--GGKMHLR 302 (340)
Q Consensus 234 ~~~vv~~~lIilR~~~p~~~r~FrvPlvP~iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG~--YG~rhS~ 302 (340)
.+.+++.+++++|+++.. + +++.|+.|++|+++++.|++++++.++.+....++|+++|+ |.+++..
T Consensus 370 ~y~~~~~a~~~lr~~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 438 (473)
T TIGR00905 370 PYLLSAAYLLKLAKVGTY-P-KIKNRKALIVGVIACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRARKE 438 (473)
T ss_pred HHHHHHHHHHHHHHcCCc-c-ccccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777777777776521 1 15667899999999999999999998888888899999996 6665443
No 15
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.65 E-value=1e-07 Score=96.29 Aligned_cols=134 Identities=10% Similarity=0.061 Sum_probs=84.0
Q ss_pred HHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHH
Q psy3481 155 KLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLI 234 (340)
Q Consensus 155 kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~ 234 (340)
.-.|+.|+|+|++.+|++++++|+ .+||+.+ .++..+..+ +-..... ..+ ...|....+ .+++..++.
T Consensus 304 ~~sR~~~~~ardg~lP~~~~kv~~-~~~P~~A------i~~~~~~~~-~~~~~~~-~~~--~~~~~~l~~-~~~~~~~~~ 371 (457)
T PRK10580 304 GVGRMLHGMAEQGSAPKIFSKTSR-RGIPWVT------VLVMTTALL-FAVYLNY-IMP--ENVFLVIAS-LATFATVWV 371 (457)
T ss_pred HHHHHHHHHHhCCCcCHHHHhhCC-CCCcHHH------HHHHHHHHH-HHHHHHh-cCh--HHHHHHHHH-HHHHHHHHH
Confidence 456799999999999999999996 6999854 222211111 1000000 000 111222112 233444556
Q ss_pred HHHHHHHhhheecccC---CCCCcccccccchhhHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHH--hhhhh
Q psy3481 235 MGVIRGLFVIEAHEQN---MEGLRFKVPLVPFVPGLSIFFNIELMANL-----NVLTWLRFIIWMALEC--GGKMH 300 (340)
Q Consensus 235 ~~vv~~~lIilR~~~p---~~~r~FrvPlvP~iP~l~il~~l~L~~~L-----~~~tw~~~~vW~~iG~--YG~rh 300 (340)
+.++..+.+.+|++.+ ..+++|++|+.|+++.++++.+++++.-+ ...+....++|+++++ |...|
T Consensus 372 y~~~~~~~~~lr~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~ 447 (457)
T PRK10580 372 WIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKR 447 (457)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666667777776642 24569999999999999999998776543 3345577788888875 66655
No 16
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.58 E-value=1.3e-07 Score=96.13 Aligned_cols=128 Identities=11% Similarity=0.136 Sum_probs=77.1
Q ss_pred HHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHH-HHHHHHhhhchHHHHHHHHhhhhhhhhhhHHH
Q psy3481 155 KLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYAL-EIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPL 233 (340)
Q Consensus 155 kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~al-eI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~ 233 (340)
.-.|+.|+|+|++.+|++++++|++ +||+.+ .++..+.++ .+.+.....+ ....+... ...+++...+
T Consensus 316 ~~sR~l~a~ardg~lP~~~~kv~~~-~tP~~A------i~~~~~~~~~~~~~~~~~~~---~~~~~~~l-~~~~~~~~~i 384 (469)
T PRK11049 316 STSRMLFGLAQEGVAPKAFAKLSKR-AVPAKG------LTFSCICLLGGVVLLYVNPS---VIGAFTLV-TTVSAILFMF 384 (469)
T ss_pred HHHHHHHHHHhCCCCCHHHHhhCCC-CCCHHH------HHHHHHHHHHHHHHHHhCcc---HHHHHHHH-HHHHHHHHHH
Confidence 4578999999999999999999966 999953 222222111 1111110101 01111111 1123334445
Q ss_pred HHHHHHHHhhheecccCCCC--CcccccccchhhHHHHHHHHHHHhc--CC---HHHHHHHHHHHHH
Q psy3481 234 IMGVIRGLFVIEAHEQNMEG--LRFKVPLVPFVPGLSIFFNIELMAN--LN---VLTWLRFIIWMAL 293 (340)
Q Consensus 234 ~~~vv~~~lIilR~~~p~~~--r~FrvPlvP~iP~l~il~~l~L~~~--L~---~~tw~~~~vW~~i 293 (340)
.+.++..+++++|+++|+.+ +|||+|+.|++|+++++.+++.+.. .+ ...+...++|+++
T Consensus 385 ~y~~~~~a~~~lr~~~p~~~~~~pf~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (469)
T PRK11049 385 VWTIILCSYLVYRKQRPHLHEKSIYKMPLGKLMCWVCMAFFAFVLVLLTLEDDTRQALIVTPLWFIA 451 (469)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCCCccCcCcchHHHHHHHHHHHHHHHHHHchhHHHHHHHHHHHHHH
Confidence 55566667778888887755 6899999999999988877654432 22 2356677777553
No 17
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.52 E-value=1.7e-07 Score=103.39 Aligned_cols=118 Identities=10% Similarity=-0.029 Sum_probs=81.1
Q ss_pred HHHhhhcccchHHHH--HHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHH
Q psy3481 156 LGKLYFDREDFNKLS--RILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPL 233 (340)
Q Consensus 156 L~~l~~~m~~~~~lp--~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~ 233 (340)
-.|++++|+|++.+| ++|+++|++.+||.. +.++..++++-.-+.. +...+ .. ..++..++
T Consensus 409 asRvl~AmArDg~lP~l~~fakv~~k~~tP~~------Alllt~iIa~l~ili~---~l~~i-------a~-lis~~fLl 471 (953)
T TIGR00930 409 APRLFQALCKDNIYPFLQFFGKGYGKNGEPLR------AYLLTAFIAEGFILIA---ELNTI-------AP-IISNFFLA 471 (953)
T ss_pred HHHHHHHHHhcCCCCcchhhcccCCCCCCcHH------HHHHHHHHHHHHHHHH---hHHHH-------HH-HHHHHHHH
Confidence 356999999999999 899999999999995 4444444443211111 11111 11 13556677
Q ss_pred HHHHHHHHhhheeccc-CCCCCcccccccchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy3481 234 IMGVIRGLFVIEAHEQ-NMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALE 294 (340)
Q Consensus 234 ~~~vv~~~lIilR~~~-p~~~r~FrvPlvP~iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG 294 (340)
.+.+++.+.+++|.++ |...+.||. +.|++|++|+++|+++|+.++ |...+++++++
T Consensus 472 ~Y~lvnla~~~l~~~~~p~~RP~fk~-~~~~~sllG~l~c~~lmf~i~---w~~ali~~~i~ 529 (953)
T TIGR00930 472 SYALINFSCFHASLLRSPGWRPRFKY-YHWWLSLLGASLCCAIMFLIS---WWAALVAMVIA 529 (953)
T ss_pred HHHHHHHHHHHHhhccCCCCCCcccc-chHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 7788888877776554 444455666 789999999999999998874 66666666665
No 18
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.49 E-value=6e-07 Score=90.80 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=70.8
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHH
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPL 233 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~ 233 (340)
..-.|+.|+|+|++.+|++++++| +.+||..+ .++..+.++ +-....... . ...+..-.+ .+++..++
T Consensus 286 ~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~A------il~~~~~~~-l~~l~~~~~-~--~~~~~~l~~-~~~~~~li 353 (446)
T PRK10197 286 YTASRMLYSLSRRGDAPAVMGKIN-RSKTPYVA------VLLSTGAAF-LTVVVNYYA-P--AKVFKFLID-SSGAIALL 353 (446)
T ss_pred HHHHHHHHHHHcCCCcCHHHHhhC-cCCCcHHH------HHHHHHHHH-HHHHHHhcC-h--HHHHHHHHH-HHHHHHHH
Confidence 445679999999999999999999 77999853 333222222 101110000 0 111222111 24445556
Q ss_pred HHHHHHHHhhheecc--cCCCCCcccccccchhhHHHHHHHHHHHh
Q psy3481 234 IMGVIRGLFVIEAHE--QNMEGLRFKVPLVPFVPGLSIFFNIELMA 277 (340)
Q Consensus 234 ~~~vv~~~lIilR~~--~p~~~r~FrvPlvP~iP~l~il~~l~L~~ 277 (340)
.+.++..+.+.+|++ .++.+++||.|+.|++|.++++.|++++.
T Consensus 354 ~y~~~~~a~i~lr~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~ 399 (446)
T PRK10197 354 VYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWLVIGFITFVLV 399 (446)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcCCCcchHHHHHHHHHHHHHH
Confidence 666677777777764 45567899999999999999988865554
No 19
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.48 E-value=6.1e-07 Score=90.94 Aligned_cols=113 Identities=13% Similarity=0.175 Sum_probs=71.3
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHH
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPL 233 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~ 233 (340)
.--.|+.|+|+|++.+|++++++| +.+||..+ .++..+.++ +-... .. ......|....+. +++..++
T Consensus 310 ~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~A------i~~~~~~~~-l~~l~-~~--~~~~~~~~~l~~~-~~~~~~i 377 (478)
T TIGR00913 310 YASSRTLYALAHQGLAPKIFAYVD-RRGVPYVA------VIVSSLFGL-LAFLA-VS--KKEAEVFTWLLNI-SGLSGFF 377 (478)
T ss_pred HHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHH------HHHHHHHHH-HHHHH-Hc--cChHHHHHHHHHH-HHHHHHH
Confidence 345679999999999999999999 56999853 222222221 10010 00 0001122222222 3345555
Q ss_pred HHHHHHHHhhheecc-----cCCCCCcccccccchhhHHHHHHHHHHHhc
Q psy3481 234 IMGVIRGLFVIEAHE-----QNMEGLRFKVPLVPFVPGLSIFFNIELMAN 278 (340)
Q Consensus 234 ~~~vv~~~lIilR~~-----~p~~~r~FrvPlvP~iP~l~il~~l~L~~~ 278 (340)
.+.++..+.+.+|++ +|+.+||||+|+.|++|.++++.|++++..
T Consensus 378 ~y~~~~~~~i~~r~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 427 (478)
T TIGR00913 378 TWMCICLSHIRFRKAMKAQGRSLDELPYKSQTGPYGSYYALFFNILILIA 427 (478)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCCccCCCcchHHHHHHHHHHHHHHH
Confidence 666666677776654 345689999999999999999998876654
No 20
>PRK15049 L-asparagine permease; Provisional
Probab=98.44 E-value=1e-06 Score=90.67 Aligned_cols=110 Identities=10% Similarity=0.106 Sum_probs=68.8
Q ss_pred HHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHH-HHHHHHhhhchHHHHHHHHhhhhhhhhhhHHH
Q psy3481 155 KLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYAL-EIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPL 233 (340)
Q Consensus 155 kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~al-eI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~ 233 (340)
--.|+.|+|+|++.+|++++++| +.+||..+ .++..++.+ .+ +...+. -...|....+ .+++..++
T Consensus 325 ~~sR~l~a~Ardg~lP~~f~kv~-k~~~P~~A------il~~~~i~~l~~-~l~~~~----~~~~f~~l~~-~~~~~~li 391 (499)
T PRK15049 325 CTGRILRSMAMGGSAPSFMAKMS-RQHVPYAG------ILATLVVYVVGV-FLNYLV----PSRVFEIVLN-FASLGIIA 391 (499)
T ss_pred HHHHHHHHHHhcCCcCHHHHHhC-CCCCCHHH------HHHHHHHHHHHH-HHHhcC----hHHHHHHHHH-HHHHHHHH
Confidence 34779999999999999999999 77999954 222222211 10 000000 0122222222 23445555
Q ss_pred HHHHHHHHhhheecccC---CCCCcccccccchhhHHHHHHHHHHHh
Q psy3481 234 IMGVIRGLFVIEAHEQN---MEGLRFKVPLVPFVPGLSIFFNIELMA 277 (340)
Q Consensus 234 ~~~vv~~~lIilR~~~p---~~~r~FrvPlvP~iP~l~il~~l~L~~ 277 (340)
.+.++.++.+.+|++.+ ..++|||+|++|++|+++++.+++++.
T Consensus 392 ~y~~~~~~~l~~R~~~~~~~~~~~pf~~~~~p~~~~~~l~~~~~~~~ 438 (499)
T PRK15049 392 SWAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLV 438 (499)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCcccCccHHHHHHHHHHHHHHH
Confidence 66666667666676533 346799999999999999988875554
No 21
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.42 E-value=8.2e-07 Score=90.22 Aligned_cols=110 Identities=6% Similarity=0.005 Sum_probs=66.4
Q ss_pred HHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHH-HHHhhhchHHHHHHHHhhhhhhhhhhHHHHH
Q psy3481 157 GKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQ-MYTAQKNNKKLKKLYEQSLHIKSAIPHPLIM 235 (340)
Q Consensus 157 ~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~-~~~~l~n~~~l~~~~~~~~~i~~si~~~~~~ 235 (340)
.|+.|+|+|++.+|++++++| +.+||+.+ .++..+...-+- ++....+ ....+.....+ +++..++.+
T Consensus 304 sR~~~a~ardg~lP~~~~kv~-k~~~P~~a------~~~~~~~~~~l~~~~~~~~s---~~~~f~~l~~~-~~~~~~i~y 372 (474)
T TIGR03813 304 SSGMLAVAKAGYLPTFFQKTN-KNGMPIHI------MFVQGIAVSVLSVLFVVMPS---VQAAFQILSQL-TVILYLVMY 372 (474)
T ss_pred HHHHHHHhhcCCCCHHHhccC-CCCCcHHH------HHHHHHHHHHHHHHHHhccc---HHHHHHHHHHH-HHHHHHHHH
Confidence 579999999999999999999 78999843 222222111000 1110101 11222222222 224444555
Q ss_pred HHHHHHhhheecccCCCCCcccccccch----hhHHHHHHHHHHHh
Q psy3481 236 GVIRGLFVIEAHEQNMEGLRFKVPLVPF----VPGLSIFFNIELMA 277 (340)
Q Consensus 236 ~vv~~~lIilR~~~p~~~r~FrvPlvP~----iP~l~il~~l~L~~ 277 (340)
.+..++++++|+++|+.+||||+|+.|+ +..++++.+++.+.
T Consensus 373 ~~~~~a~i~lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~ 418 (474)
T TIGR03813 373 LLMFASAIYLRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFV 418 (474)
T ss_pred HHHHHHHHHHHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHh
Confidence 6666778888988899999999998655 55566665554444
No 22
>PRK10746 putative transport protein YifK; Provisional
Probab=98.40 E-value=1.2e-06 Score=89.23 Aligned_cols=131 Identities=12% Similarity=0.113 Sum_probs=81.0
Q ss_pred HHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHH
Q psy3481 155 KLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLI 234 (340)
Q Consensus 155 kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~ 234 (340)
.-.|++|+|+|++.+|++++++| +.+||+.+. ++-+...-+-....+- .+.....|....++ +++..++.
T Consensus 305 ~~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al-------~~~~~~~~l~~~~~~~-~~~~~~~f~~l~~~-~~~~~~i~ 374 (461)
T PRK10746 305 SCGRMLYALAKNRQLPAAMAKVS-RHGVPVAGV-------AVSILILLVGSCLNYI-IPNPQRVFVYVYSA-SVLPGMVP 374 (461)
T ss_pred HHHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHH-------HHHHHHHHHHHHHHHh-ccCHHHHHHHHHHH-HHHHHHHH
Confidence 45679999999999999999999 679999542 2211111000000000 00012233332222 33445566
Q ss_pred HHHHHHHhhheecccCC--CCCcccccccchhhHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHH
Q psy3481 235 MGVIRGLFVIEAHEQNM--EGLRFKVPLVPFVPGLSIFFNIELMANLN-----VLTWLRFIIWMALEC 295 (340)
Q Consensus 235 ~~vv~~~lIilR~~~p~--~~r~FrvPlvP~iP~l~il~~l~L~~~L~-----~~tw~~~~vW~~iG~ 295 (340)
+..+.++.+.+|+++|+ .++|||.|+.|+.|.++++.++.++.... ..+....++|+++++
T Consensus 375 w~~i~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (461)
T PRK10746 375 WFVILISQLRFRRAHKAAIASHPFRSILFPWANYLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVT 442 (461)
T ss_pred HHHHHHHHHHHHHhccccccCCCCcCCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHH
Confidence 67777788888888775 57899999999999999998887755431 234555556655553
No 23
>PRK10249 phenylalanine transporter; Provisional
Probab=98.32 E-value=2.7e-06 Score=86.40 Aligned_cols=112 Identities=13% Similarity=0.013 Sum_probs=71.0
Q ss_pred HHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHH
Q psy3481 155 KLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLI 234 (340)
Q Consensus 155 kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~ 234 (340)
--.|+.|+|+|++.+|++++++| +.+||..+ .++..+..+-.-....+.. ...|....+ .+++..++.
T Consensus 314 ~~sR~l~a~ardg~lP~~~~kv~-~~~~P~~A------ll~~~~i~~l~~l~~~~~~----~~~f~~l~~-~~~~~~~i~ 381 (458)
T PRK10249 314 SNSRMLFGLSVQGNAPKFLTRVS-RRGVPINS------LMLSGAITSLVVLINYLLP----QKAFGLLMA-LVVATLLLN 381 (458)
T ss_pred HHHHHHHHHhcCCCcCHHHHHhC-CCCCCHHH------HHHHHHHHHHHHHHHHhCh----HHHHHHHHH-HHHHHHHHH
Confidence 45789999999999999999999 56999853 3333332221101100100 112222222 233445556
Q ss_pred HHHHHHHhhheec--ccCCCCCcccccccchhhHHHHHHHHHHHhc
Q psy3481 235 MGVIRGLFVIEAH--EQNMEGLRFKVPLVPFVPGLSIFFNIELMAN 278 (340)
Q Consensus 235 ~~vv~~~lIilR~--~~p~~~r~FrvPlvP~iP~l~il~~l~L~~~ 278 (340)
+.++..+.+.+|+ +++..++|||.|++|++|.++++.+.+++..
T Consensus 382 y~~~~~~~l~~r~~~~~~~~~~p~~~~~~p~~~~~~l~~~~~~~v~ 427 (458)
T PRK10249 382 WIMICLAHLRFRAAMRRQGRETQFKALLYPFGNYLCIAFLGMILLL 427 (458)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHH
Confidence 6666667666675 4566788999999999999999888766543
No 24
>PRK11021 putative transporter; Provisional
Probab=98.31 E-value=2e-06 Score=85.58 Aligned_cols=119 Identities=11% Similarity=-0.015 Sum_probs=74.0
Q ss_pred HHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHH-H-HHhhhchHHHHHHHHhhhhhhhhhhHHH
Q psy3481 156 LGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQ-M-YTAQKNNKKLKKLYEQSLHIKSAIPHPL 233 (340)
Q Consensus 156 L~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~-~-~~~l~n~~~l~~~~~~~~~i~~si~~~~ 233 (340)
-.|+.|+|+|++.+|++++++|+ .+||+.+ .++..+..+-.- + +....+.. .... .+++..++
T Consensus 283 ~sR~l~a~ardg~lP~~~~k~~~-~~tP~~a------il~~~~i~~~~~l~~~~~~~~~~-------~l~~-~~~~~~li 347 (410)
T PRK11021 283 FARLVWSQAREGRPPSYLARLSA-RGVPVNA------LNAVLGCCAVSILLIYALGLNLE-------ALIA-YANGIFVL 347 (410)
T ss_pred HHHHHHHHHccCCccHHHHhhcc-CCCcHHH------HHHHHHHHHHHHHHHHHHhcCHH-------HHHH-HHHHHHHH
Confidence 46899999999999999999995 6999853 333332221110 0 11001111 1111 23344555
Q ss_pred HHHHHHHHhhheecccCCCCCcccccccchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---hhhhhc
Q psy3481 234 IMGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALEC---GGKMHL 301 (340)
Q Consensus 234 ~~~vv~~~lIilR~~~p~~~r~FrvPlvP~iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG~---YG~rhS 301 (340)
.+.+++.+++.+++++ .|++|+++++.|++++..+++..|... +++++|. |+++|+
T Consensus 348 ~y~~~~~a~~~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 406 (410)
T PRK11021 348 IYLLCMLAACKLLKGR-----------YRPLAVLGCLLCLLLLVMLGWKMLYAL-IMLALLWLFLPKRKTH 406 (410)
T ss_pred HHHHHHHHHHHHhccc-----------hHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhhh
Confidence 6666666666655443 268999999999999999998876553 4445553 566655
No 25
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.28 E-value=4.1e-06 Score=86.42 Aligned_cols=112 Identities=7% Similarity=-0.029 Sum_probs=67.4
Q ss_pred HHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHH-HHHHhhhchHHHHHHHHhhhhhhhhhhHHHH
Q psy3481 156 LGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEI-QMYTAQKNNKKLKKLYEQSLHIKSAIPHPLI 234 (340)
Q Consensus 156 L~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI-~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~ 234 (340)
-.|+.++|+|++.+|++++++| +.++|..+ .++..++..-+ -++.-..+ .....|... ...+++..++.
T Consensus 305 ~sR~l~~~ardg~lP~~~~k~n-k~~~P~~a------~~~~~~i~~l~~~~~~~~~~--~~~~~f~~l-~~~~~~~~~i~ 374 (507)
T TIGR00910 305 PSRGMFAAAQKGLLPAAFAKMN-KHEVPVPL------VIIQGIITSIAGAILTFGGG--GNNLSFLIA-IALTVVIYLCA 374 (507)
T ss_pred HHHHHHHhcccCCcCHHHHhhC-cCCCcHHH------HHHHHHHHHHHHHHHHcCCc--hHHHHHHHH-HHHHHHHHHHH
Confidence 4568999999999999999999 77999853 22222222110 01110000 000011110 01123444455
Q ss_pred HHHHHHHhhheecccCCCCCcccccccc----hhhHHHHHHHHHHHh
Q psy3481 235 MGVIRGLFVIEAHEQNMEGLRFKVPLVP----FVPGLSIFFNIELMA 277 (340)
Q Consensus 235 ~~vv~~~lIilR~~~p~~~r~FrvPlvP----~iP~l~il~~l~L~~ 277 (340)
++++.++++.+|+++|+.+||||+|+.| +++.++++.+++.+.
T Consensus 375 Y~l~~~a~i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v 421 (507)
T TIGR00910 375 YFLFFIGYFVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFF 421 (507)
T ss_pred HHHHHHHHHHHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHh
Confidence 5566667788899999999999999865 567777777765554
No 26
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.27 E-value=4.2e-06 Score=85.03 Aligned_cols=125 Identities=8% Similarity=-0.025 Sum_probs=80.6
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHH
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPL 233 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~ 233 (340)
.--.|+.|+|+|++.+|++++++| +.+||+.+ .++..+...-..... ..+ ...|....+. +++..++
T Consensus 299 ~~~sR~~~a~ardg~lP~~f~k~~-~~~tP~~a------l~~~~~i~~~~~l~~-~~~----~~~~~~l~~~-~~~~~li 365 (468)
T TIGR03810 299 LLPAEIPLLMAKDKLMPKYFGKEN-ANGAPTNA------LWLTNGLIQIFLLTT-LFS----EQAYNFAISL-ATSAILV 365 (468)
T ss_pred HHHHHHHHHHHhCCCccHHHHhhC-CCCCCHHH------HHHHHHHHHHHHHHH-Hcc----HHHHHHHHHH-HHHHHHH
Confidence 345679999999999999999999 56999954 222222221010110 000 1233333232 3445556
Q ss_pred HHHHHHHHhhheecccC-CCCCcccccccchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy3481 234 IMGVIRGLFVIEAHEQN-MEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALEC 295 (340)
Q Consensus 234 ~~~vv~~~lIilR~~~p-~~~r~FrvPlvP~iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG~ 295 (340)
.+.+++++.+++|++++ ..+|+.+ +++|+++.+.|+++++..++..+....+.+++|+
T Consensus 366 ~y~~~~~~~~~l~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 424 (468)
T TIGR03810 366 PYLWSAAYQVKLSWRGGQERGRRKQ----LLIGLVALLYAVWLIYAAGLKYLLLSAILYAPGI 424 (468)
T ss_pred HHHHHHHHHHHHHHhcCCccchhhh----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 66666667777766553 2233333 7899999999999999999988888888888886
No 27
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.25 E-value=2.9e-06 Score=86.16 Aligned_cols=110 Identities=7% Similarity=0.058 Sum_probs=63.0
Q ss_pred hHHHHhhhcccchHHHH--HHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhH
Q psy3481 154 TKLGKLYFDREDFNKLS--RILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPH 231 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp--~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~ 231 (340)
.--.|+.|+|+|++.+| ++++++||+++||..+ .++..++.+-+ ....+.+ ...|....+. +++..
T Consensus 325 ~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~a------i~~~~~i~~~~-~~~~~~~----~~~f~~l~~~-~~~~~ 392 (482)
T TIGR00907 325 TANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNA------VWLSAVWIILI-GLLGLGS----STAFQAIFSV-CTVAL 392 (482)
T ss_pred HHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHH------HHHHHHHHHHH-HHHHhhh----HHHHHHHHHH-HHHHH
Confidence 34467999999999999 9999999999999854 33333332211 1111111 1122222222 22333
Q ss_pred HHHHHHHHHHhhheecccCCCCCcccc-cccchhhHHHHHHHHHHH
Q psy3481 232 PLIMGVIRGLFVIEAHEQNMEGLRFKV-PLVPFVPGLSIFFNIELM 276 (340)
Q Consensus 232 ~~~~~vv~~~lIilR~~~p~~~r~Frv-PlvP~iP~l~il~~l~L~ 276 (340)
.+.+.+..++.+.+| +++..+||||+ |+.|+++.++++.+++.+
T Consensus 393 ~i~y~~~~~~~l~~~-~~~~~~~~f~lg~~~~~~~~~~~~~~~~~~ 437 (482)
T TIGR00907 393 DVSYVIPIICKLAKG-RNTIAPGPFWLGKYGFFVNAVAVAWTVFSS 437 (482)
T ss_pred HHHHHHHHHHHHHhc-CCCCCCCCCcCCcchHHHHHHHHHHHHHHH
Confidence 334444444444333 33567889999 567777777776555443
No 28
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.24 E-value=3.5e-06 Score=84.91 Aligned_cols=112 Identities=12% Similarity=0.126 Sum_probs=67.7
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHH
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPL 233 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~ 233 (340)
..-.|+.|+|+|++.+|++++++| +.+||..+ .++..+.++-.-+.. ..+ -...|....+ .+++..++
T Consensus 306 ~~~sR~~~a~ardg~lP~~~~~v~-~~~~P~~A------il~~~~~~~~~~l~~-~~~---~~~~f~~l~~-~~~~~~~~ 373 (452)
T TIGR01773 306 YTTSRMLYSLAERGDAPRVFMKLN-KKGVPVQA------VLASTFFSFLTVVVN-YFA---PDKVFLFLVN-SSGAIALL 373 (452)
T ss_pred HHHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHH------HHHHHHHHHHHHHHH-ccC---HHHHHHHHHH-HHHHHHHH
Confidence 345679999999999999999999 67999853 333222222110100 000 0112222111 12333456
Q ss_pred HHHHHHHHhhheecccCCCCC--cccccccchhhHHHHHHHHHHHh
Q psy3481 234 IMGVIRGLFVIEAHEQNMEGL--RFKVPLVPFVPGLSIFFNIELMA 277 (340)
Q Consensus 234 ~~~vv~~~lIilR~~~p~~~r--~FrvPlvP~iP~l~il~~l~L~~ 277 (340)
.+.++.++.+.+|++.|+.++ +||.|++|++|.++++.+++++.
T Consensus 374 ~y~~~~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 419 (452)
T TIGR01773 374 VYLVIAVSQLRMRKKLKANGEAIKIRMWLYPWLTWLVIIFICGILV 419 (452)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHH
Confidence 666666777778877666444 57778899999988876664443
No 29
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.23 E-value=3.4e-06 Score=84.91 Aligned_cols=129 Identities=8% Similarity=-0.049 Sum_probs=69.9
Q ss_pred HHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHH-HHHHhhhc-hHHHHHHHHhhhhhhhhhhHHHH
Q psy3481 157 GKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEI-QMYTAQKN-NKKLKKLYEQSLHIKSAIPHPLI 234 (340)
Q Consensus 157 ~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI-~~~~~l~n-~~~l~~~~~~~~~i~~si~~~~~ 234 (340)
+|..+.|+|++.+|++++++| +.+||..+ .++..+...-+ ....-+.+ .......|....++++ +..++.
T Consensus 294 ~r~~~~~ardG~lP~~f~k~n-k~g~P~~A------l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~l~~ 365 (435)
T PRK10435 294 GQAGVRAANDGNFPKVYGEVD-KNGIPKKG------LLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAV-LLTMLP 365 (435)
T ss_pred HHHHHHHHhCCCccHHHHhhC-cCCCCHHH------HHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHH-HHHHHH
Confidence 467788999999999999999 68999853 33333222100 00100100 0011223333333332 333334
Q ss_pred HHHHHHHhhheecccCCCCCcccccccchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-----hhhhhcc
Q psy3481 235 MGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALEC-----GGKMHLR 302 (340)
Q Consensus 235 ~~vv~~~lIilR~~~p~~~r~FrvPlvP~iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG~-----YG~rhS~ 302 (340)
+.++..+++.+ ++++ +|-|..|+ ++++.++|+++.+...+|..+..|+.++. ||+||..
T Consensus 366 y~~~~~~~ir~--~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (435)
T PRK10435 366 YFYSCVDLIRF--EGVN----IRNFVSLI---CSVLGCVFCFIALMGASSFELAGTFIVSLIILMFYARKMHE 429 (435)
T ss_pred HHHHHHHHHHh--cCCc----hhHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555555533 3333 33333444 44555555555555778999999987763 7888754
No 30
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.16 E-value=6.1e-06 Score=83.75 Aligned_cols=113 Identities=7% Similarity=0.046 Sum_probs=70.3
Q ss_pred HHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHH
Q psy3481 155 KLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLI 234 (340)
Q Consensus 155 kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~ 234 (340)
--.|+.|+|+|++.+|++++++|+ .+||..+ .++..+..+-.-+...+.+ ...|....++ +++..++.
T Consensus 305 ~~sR~l~a~ardg~lP~~f~kv~~-~~~P~~A------il~~~~i~~l~~l~~~~~~----~~~f~~l~~~-~~~~~~i~ 372 (456)
T PRK10238 305 CNSRMLFGLAQQGNAPKALASVDK-RGVPVNT------ILVSALVTALCVLINYLAP----ESAFGLLMAL-VVSALVIN 372 (456)
T ss_pred HHHHHHHHHHhCCCccHHHHhhCc-CCCcHHH------HHHHHHHHHHHHHHHhcCh----HHHHHHHHHH-HHHHHHHH
Confidence 345799999999999999999995 5999854 2333222210001100111 1122221121 33444556
Q ss_pred HHHHHHHhhheecccCC--CCCcccccccchhhHHHHHHHHHHHhcC
Q psy3481 235 MGVIRGLFVIEAHEQNM--EGLRFKVPLVPFVPGLSIFFNIELMANL 279 (340)
Q Consensus 235 ~~vv~~~lIilR~~~p~--~~r~FrvPlvP~iP~l~il~~l~L~~~L 279 (340)
+.++..+.+++|++.++ .+++|+.|++|++|.++++.+++++.-+
T Consensus 373 y~~~~~~~l~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 419 (456)
T PRK10238 373 WAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAAVLVIM 419 (456)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcCCCccHHHHHHHHHHHHHHHHH
Confidence 66666777777776554 3578999999999999998888666544
No 31
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.06 E-value=1.8e-05 Score=78.77 Aligned_cols=115 Identities=8% Similarity=0.114 Sum_probs=71.8
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHH
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPL 233 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~ 233 (340)
.--.|+.|+|+|++.+|+.++++|++.+||+.+ .++..++.+-........ ...+... ...++++.++
T Consensus 307 ~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a------~~~~~ii~~~l~~~~~~~-----~~~~~~l-~~~~~~~~~~ 374 (466)
T COG0531 307 LAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIA------LILTGIISLILLLLFPLS-----SIAFNAL-VSLASVAFLI 374 (466)
T ss_pred HHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHH------HHHHHHHHHHHHHHhhcc-----ccHHHHH-HHHHHHHHHH
Confidence 456779999999999999999999999999953 333333333010111000 0111111 1224455566
Q ss_pred HHHHHHHHhhheecccCCCCCcccccccchh---hHHHHHHHHHHHhcCC
Q psy3481 234 IMGVIRGLFVIEAHEQNMEGLRFKVPLVPFV---PGLSIFFNIELMANLN 280 (340)
Q Consensus 234 ~~~vv~~~lIilR~~~p~~~r~FrvPlvP~i---P~l~il~~l~L~~~L~ 280 (340)
.+.+...+++++|++.++.+++++.|..+.. +.+.++.+++.+....
T Consensus 375 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (466)
T COG0531 375 AYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVAVLLLLYALYASG 424 (466)
T ss_pred HHHHHHHHHHHHhhcCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHh
Confidence 6677777888888888889999999986654 4444455555444333
No 32
>KOG1286|consensus
Probab=97.96 E-value=5.8e-06 Score=86.63 Aligned_cols=111 Identities=7% Similarity=0.094 Sum_probs=73.4
Q ss_pred HHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHH
Q psy3481 155 KLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLI 234 (340)
Q Consensus 155 kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~ 234 (340)
...|++++|+++|.+|++|+++|++ ++|.. ++++..+.++-.-+....+. ...|..... -.++..++.
T Consensus 342 ~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~------a~~v~~~~~~l~~~~~~~~~----~~~f~~L~~-~~si~tl~~ 409 (554)
T KOG1286|consen 342 AGSRVLYALAKDGLAPKFFARVDRR-GVPLV------AVLVSGLFGALAALNFSLGA----ATVFNWLVN-LSSIGTLFA 409 (554)
T ss_pred HhHHHHHHHHhcCCcchHHhhcCCC-CCchh------HHHHHHHHHHHHHHHhcccc----chHHHHHHH-HHhHHHHHH
Confidence 3557999999999999999999999 99995 44444444432212221111 112222222 245666778
Q ss_pred HHHHHHHhhheeccc-----CCCCCcccccccchhhHHHHHHHHHHHh
Q psy3481 235 MGVIRGLFVIEAHEQ-----NMEGLRFKVPLVPFVPGLSIFFNIELMA 277 (340)
Q Consensus 235 ~~vv~~~lIilR~~~-----p~~~r~FrvPlvP~iP~l~il~~l~L~~ 277 (340)
++.++.+++.+|+.. +..+.+|+-|..|+...+++++++....
T Consensus 410 w~~i~~~~i~~R~a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~ 457 (554)
T KOG1286|consen 410 WTLVALSHLRFRYAMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILL 457 (554)
T ss_pred HHHHHHHHeeeeecccccCCCcccccccCCCCCchhHHHHHHHHHHHH
Confidence 888888888888764 2345678888888888888877774443
No 33
>KOG1287|consensus
Probab=97.89 E-value=2.1e-05 Score=80.90 Aligned_cols=102 Identities=15% Similarity=0.170 Sum_probs=68.4
Q ss_pred HHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHHHH
Q psy3481 157 GKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMG 236 (340)
Q Consensus 157 ~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~~~ 236 (340)
.|+.++++|.|.+|..++.+|.+..||..+ .++..+.++ .+.-.+|...+-... ++...+..+
T Consensus 310 SR~~~~~areG~LP~~~s~i~~~~~TP~~a------llf~~~~~i---~~~~~~d~~~LIny~--------sf~~~l~~~ 372 (479)
T KOG1287|consen 310 SRLFYAGAREGHLPAFFSMISVRRFTPRPA------LLFSGLLSI---VLSLIGDFDQLINYV--------SFAYWLFRG 372 (479)
T ss_pred HHHHHHHHHccCccHHHHhhcCCCCCChHH------HHHHHHHHH---HHHHHhhHHHHHHHH--------HHHHHHHHH
Confidence 468999999999999999999999999843 222222222 111112222222222 233334445
Q ss_pred HHHHHhhheecccCCCCCcccccccchhhHHHHHHHHHHHh
Q psy3481 237 VIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMA 277 (340)
Q Consensus 237 vv~~~lIilR~~~p~~~r~FrvPlvP~iP~l~il~~l~L~~ 277 (340)
+..++++++|+++|+.+||+|+|+ ++|.+-++.|++|..
T Consensus 373 l~~~gll~lR~k~p~~~rPiKvpl--~~p~~~~~~~i~lvv 411 (479)
T KOG1287|consen 373 LSMAGLLWLRWKHPPLPRPIKVPL--FIPILFLLICIFLVV 411 (479)
T ss_pred HHHHHHHHHHhhCCCCCCCEeeee--ehHHHHHHHHHHHhh
Confidence 666788999999999999999997 467777777776655
No 34
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.64 E-value=4.1e-05 Score=77.76 Aligned_cols=113 Identities=16% Similarity=0.121 Sum_probs=70.6
Q ss_pred HHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHHH
Q psy3481 156 LGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIM 235 (340)
Q Consensus 156 L~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~~ 235 (340)
-.|++|+|+|++.+|+.+.+.|+|.++|+.+.. +.-++++-.-+..... .. ..+....+ .+++..+..+
T Consensus 311 ~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~------~~~~i~~~~~l~~~~~-~~---~~~~~~~~-~~~~~~l~~~ 379 (478)
T PF00324_consen 311 ASRLLYAMARDGLLPKKFFARHPKNGVPYVAIL------VSSIISLLVLLLGSFS-PG---IVFNWLLN-ISTISNLIVY 379 (478)
T ss_pred cceeehhhhhhhhhhhhhhhhhhcCCceEEEEe------eehhchheeeeeccch-hh---HHHHHHhh-hhhhhhhhHH
Confidence 456999999999999888889999999997533 3332222111111110 01 22222222 2345556667
Q ss_pred HHHHHHhhheecccCC-----CCCcccccccchhhHHHHHHHHHHHhcC
Q psy3481 236 GVIRGLFVIEAHEQNM-----EGLRFKVPLVPFVPGLSIFFNIELMANL 279 (340)
Q Consensus 236 ~vv~~~lIilR~~~p~-----~~r~FrvPlvP~iP~l~il~~l~L~~~L 279 (340)
..++.+.+.+|++.+. ...+|+.|+.|+.++.++..++.++..+
T Consensus 380 ~~~~~s~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~ 428 (478)
T PF00324_consen 380 ILINISYIRFRKKFKYRGRSISELPFKSPFGPMFAILGIAALIIILIFL 428 (478)
T ss_pred HhhhhhhhhhhhhhccccccccccChhhhhhHHhHHHHHHHHHHHhhhh
Confidence 7777777766666322 3458999999999998887777555433
No 35
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=97.37 E-value=0.00035 Score=71.21 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=62.2
Q ss_pred hHHHHhhhcccchHHHHH--HHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhH
Q psy3481 154 TKLGKLYFDREDFNKLSR--ILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPH 231 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~--~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~ 231 (340)
+--.|+.|+|+|++.+|. +++++|||++||.. +.++..++++-+ ..-.+++. ..|....++ +++..
T Consensus 318 ~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~------A~~l~~~i~~~~-~~i~~~~~----~af~~l~s~-~~~~~ 385 (475)
T TIGR03428 318 TAGSRLMFSMARDGKLPASAQLSRVHPRTGTPIL------PSIVIGVLCIGI-LLINVGNS----ALFATLASV-CIVLI 385 (475)
T ss_pred HHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHH------HHHHHHHHHHHH-HHHhcCcH----HHHHHHHHH-HHHHH
Confidence 446789999999999994 89999999999984 334444333211 11111111 122211111 22222
Q ss_pred HHHHHHHHHHhhheecc------cCCCCCccccc-ccchhhHHHHHHHHHHH
Q psy3481 232 PLIMGVIRGLFVIEAHE------QNMEGLRFKVP-LVPFVPGLSIFFNIELM 276 (340)
Q Consensus 232 ~~~~~vv~~~lIilR~~------~p~~~r~FrvP-lvP~iP~l~il~~l~L~ 276 (340)
.+.+.++.+..+++|++ ++..++||+.+ +.+++++++++-+++.+
T Consensus 386 ~~~Y~~~~~~~l~~~~~~~~~~~~~~~~g~f~lg~~g~~vn~~a~~~~~~~~ 437 (475)
T TIGR03428 386 YLAYLLVTVPLLLRRLRGWPRGDQTDPAGLFSLGRWGLPVNILAVVYGALMV 437 (475)
T ss_pred HHHHHHHHHHHHHHHHhccCCccCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 33333333343433322 22367789998 77778888877555443
No 36
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=97.35 E-value=0.00035 Score=71.49 Aligned_cols=125 Identities=17% Similarity=0.206 Sum_probs=76.7
Q ss_pred HHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHHHH
Q psy3481 157 GKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMG 236 (340)
Q Consensus 157 ~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~~~ 236 (340)
.|++|.+++.+.+|+.++++.++ +.|+.++..+...+++.|.. |.-.=...|....++ ++.+.+..+.
T Consensus 310 sRmL~~la~~g~APk~~~klsk~-gVP~~ai~~s~~~~~~~V~L----------ny~~P~~vF~~v~s~-s~~~~l~vW~ 377 (462)
T COG1113 310 SRMLYSLAKQGDAPKAFAKLSKR-GVPVNAILLSAVVLLLGVVL----------NYILPEKVFELVTSS-SGLGLLFVWL 377 (462)
T ss_pred chHHHHHhhcCcccHhHhhcccc-CCCHHHHHHHHHHHHHHHHH----------HhhcchhHHHHHHHH-HHHHHHHHHH
Confidence 36899999999999999998766 45664322221222222221 111113444444443 3444555666
Q ss_pred HHHHHhhheecccCC--CCCcccccccchhhHHHHHHHHHHHhcC-----CHHHHHHHHHHHHH
Q psy3481 237 VIRGLFVIEAHEQNM--EGLRFKVPLVPFVPGLSIFFNIELMANL-----NVLTWLRFIIWMAL 293 (340)
Q Consensus 237 vv~~~lIilR~~~p~--~~r~FrvPlvP~iP~l~il~~l~L~~~L-----~~~tw~~~~vW~~i 293 (340)
++.++-+.+|+.+|. .+.+||+|++|+.+.+++++-++.+..+ ...+....++|+++
T Consensus 378 ~I~~s~l~~rk~~~~~~~~~~fkm~~~p~~~~l~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~ 441 (462)
T COG1113 378 MILLSQLKLRKAKPAEGKKLKFKMPLYPFTNYLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVL 441 (462)
T ss_pred HHHHHHHHHHhcchhcccCcccccccccHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHH
Confidence 666666666765444 5567999999999999987766555433 33566777778654
No 37
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.34 E-value=0.0014 Score=67.21 Aligned_cols=106 Identities=9% Similarity=-0.003 Sum_probs=58.6
Q ss_pred HhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHHHHH
Q psy3481 158 KLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGV 237 (340)
Q Consensus 158 ~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~~~v 237 (340)
|.++.+++++.+|++++++| +.++|..+ .++..+..+-+-....... ......|....+ .+++..++.+.+
T Consensus 341 r~~~~~~~~g~~P~~f~k~n-k~g~P~~a------~~~~~~i~~l~~~~~~~~~-~~~~~~f~~l~~-l~~~~~li~y~~ 411 (496)
T PRK15238 341 KQLIEGTPKALWPKKMTKLN-KNGMPANA------MWLQCIIVSVFILLVSFGG-DAASAFFNILTL-MANVSMTLPYLF 411 (496)
T ss_pred HHHHhhCccCcccHHHHhhC-cCCCcHHH------HHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 46667778999999999999 88999843 2222222221111111110 112233333322 244555666666
Q ss_pred HHHHhhheecccCCCCCcccccccc-hhhHHHHHHHH
Q psy3481 238 IRGLFVIEAHEQNMEGLRFKVPLVP-FVPGLSIFFNI 273 (340)
Q Consensus 238 v~~~lIilR~~~p~~~r~FrvPlvP-~iP~l~il~~l 273 (340)
+..+++.+|+ +|+.+|+|++|..| +.+.++++.++
T Consensus 412 ~~~a~i~~r~-~~~~~r~~~~~~~~~~~~~~~~~~~~ 447 (496)
T PRK15238 412 LAGAFPFFKK-KKDIDRPFVVFKTKKSTLIATIVVVL 447 (496)
T ss_pred HHHHHHHHhh-ccCCCCCceecCCcceehhHHHHHHH
Confidence 6677777765 67888999886432 33334333333
No 38
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.20 E-value=8.2e-05 Score=73.74 Aligned_cols=109 Identities=8% Similarity=0.028 Sum_probs=66.1
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHH
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPL 233 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~ 233 (340)
.-..|+.++|+|++.+|++++++| |+++|+. +.+++-++++-.-......+ ...+... ....++...+
T Consensus 293 ~~~sR~l~~~a~d~~lP~~~~~~~-k~~~P~~------a~~~~~~i~~i~~~~~~~~~----~~~~~~l-~~~~~~~~~~ 360 (426)
T PF13520_consen 293 FGASRLLYAMARDGVLPKWFAKVN-KFGTPYN------AIILVAVISSILLLLFLFIP----QSSFDIL-VSLSSVGYLI 360 (426)
T ss_dssp HHHHHHHHHHHHTTSSSGGGGTTS-SSSSCHH------HHHHHHHHHHHHHHHTTTSS----SSHHHHH-HHHHHHHTHH
T ss_pred cchhhcccccccccchhhhhhhcc-ccCCcee------eehhhhHHHHHHHHHHHhhh----HHHHHHH-HHHHHHHHHH
Confidence 356779999999999999999999 9999994 33444444321111111100 0001111 1123455555
Q ss_pred HHHHHHHHhhheecccCCCCCcccccccchhhHHHHHHHHHHHh
Q psy3481 234 IMGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMA 277 (340)
Q Consensus 234 ~~~vv~~~lIilR~~~p~~~r~FrvPlvP~iP~l~il~~l~L~~ 277 (340)
.+.+..++.+++|+++|+.+| .|..|.+++++++.+++++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~i~~~~~~~~~~~ 401 (426)
T PF13520_consen 361 SYILVILAVLFLRRKRPDLKR---IPYRPPVGIIGIIIILFVII 401 (426)
T ss_dssp HHHHHHHHHHHTHHHSCSSGH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCcCC---CCcchHHHHHHHHHHHHHHH
Confidence 666666778888888887766 34346677777777776654
No 39
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=96.95 E-value=0.00074 Score=70.37 Aligned_cols=110 Identities=13% Similarity=0.222 Sum_probs=72.5
Q ss_pred HhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHHHHH
Q psy3481 158 KLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGV 237 (340)
Q Consensus 158 ~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~~~v 237 (340)
|++|+|++.+.+|++|+++.++ ..|..+ .++.-+.++ +-..+... .-...|..-.. .+++..++.++.
T Consensus 350 R~L~sLA~~g~APk~f~~~~r~-GvP~~a------l~vt~~fg~-lafl~~~~---~~~~vf~wL~~-isg~s~~i~W~~ 417 (541)
T COG0833 350 RMLYSLAKQGKAPKIFAKVDRR-GVPLVA------LLVTLLFGL-LAFLNSSF---KETTVFNWLLN-ISGLSGFIAWGS 417 (541)
T ss_pred HHHHHHHhcCCCchHHHhhCCC-CCchHH------HHHHHHHHH-HHHHHhcc---CcchHHHHHHH-HHHHHHHHHHHH
Confidence 6899999999999999999887 667753 222222222 11112111 11123333333 245667777888
Q ss_pred HHHHhhheeccc-----CCCCCcccccccchhhHHHHHHHHHHHhcC
Q psy3481 238 IRGLFVIEAHEQ-----NMEGLRFKVPLVPFVPGLSIFFNIELMANL 279 (340)
Q Consensus 238 v~~~lIilR~~~-----p~~~r~FrvPlvP~iP~l~il~~l~L~~~L 279 (340)
++++.+..|+.. +....|||.|++|+.|++++++|+.++...
T Consensus 418 I~~shirFR~A~~~QG~s~~~L~yks~~~p~g~~~~~~~~~li~i~q 464 (541)
T COG0833 418 ICLSHIRFRRAMKAQGRSLDELPYKSPFGPYGPIYGLILCILILIGQ 464 (541)
T ss_pred HHHHHHHHHHHHHHcCCChhhcCccCCCccHHHHHHHHHHHHHHHHc
Confidence 888877777542 224579999999999999999999877763
No 40
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.16 E-value=0.85 Score=42.98 Aligned_cols=148 Identities=9% Similarity=0.086 Sum_probs=93.7
Q ss_pred hhhhhhccccccc-cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhH
Q psy3481 31 DLENQYYNSKALK-EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYS 109 (340)
Q Consensus 31 ~lEn~y~~ak~~~-~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~ 109 (340)
+-+-.|..|+... ..+-++|++.|+++++.. + .+++.-+|.-.++..+++++++++....+++.+..- |.-+++--
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-P~~~~~~~ 107 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-P-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDY 107 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-cCCCchHH
Confidence 3444677777654 477899999999999876 3 458999999999999999999999999999988754 43322221
Q ss_pred HHHHHHH---------HHHhhcC----CChhHHHHHHHHHHHHHhhcc--------chhhh------HhHHhHHHHhhhc
Q psy3481 110 EKSINSI---------LDYISTS----KNMELLQDFYETTLEALKDAK--------NDRLW------FKTNTKLGKLYFD 162 (340)
Q Consensus 110 ~k~i~~i---------ld~~~~~----~~~~~~~~~~~~~~~~~~~~~--------~~rlf------~k~n~kL~~l~~~ 162 (340)
+--...+ ++.+-.+ +|.....+-++...+-++.-. +.|+- .+-+...++.|+.
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 1111111 122222222333333333111 01111 1234566778999
Q ss_pred ccchHHHHHHHHHHHhhcC
Q psy3481 163 REDFNKLSRILKQLHQSCQ 181 (340)
Q Consensus 163 m~~~~~lp~~l~~lH~~~k 181 (340)
.+++..+-.-++.+...+.
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp 206 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYP 206 (243)
T ss_pred cCchHHHHHHHHHHHHHCC
Confidence 9999999999999999985
No 41
>KOG1840|consensus
Probab=95.86 E-value=0.41 Score=50.19 Aligned_cols=140 Identities=13% Similarity=0.186 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHhhccccc---ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhh--ccchhhHHHHHHHHHHH
Q psy3481 45 DDPKAALQSFQKVLDLES---GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKS--AVTRNYSEKSINSILDY 119 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~---~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~--~v~k~~~~k~i~~ild~ 119 (340)
...++|+..|++.+.--. ++.-+-.=-.+..|.++|.++|++++...++++-+...+. ..+....++.++++...
T Consensus 255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 445788888888875322 4555667778999999999999999999999988886633 13445667777777776
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhcc-c-hhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCC
Q psy3481 120 ISTSKNMELLQDFYETTLEALKDAK-N-DRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDD 184 (340)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~ 184 (340)
.......+.....++-+++-++.+. . +---.++...|+.+++-|+++...-+++.+...+.+.-.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~ 401 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL 401 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence 6655556666667777777776552 2 336677889999999999999999999888888775443
No 42
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.53 E-value=0.72 Score=41.85 Aligned_cols=150 Identities=14% Similarity=0.230 Sum_probs=90.2
Q ss_pred cchhhhhhcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchh
Q psy3481 29 DVDLENQYYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRN 107 (340)
Q Consensus 29 ~~~lEn~y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~ 107 (340)
|.+-+..|..|... ...+.++|++.|++|++.- ..++|.-+|.-.++..+++.|++++....+++++... |.-++.
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~ 78 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKA 78 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcch
Confidence 44456667778764 5667899999999999875 3468999999999999999999999999999987754 433322
Q ss_pred hHHHHHHHHHHHh------hcCCChhHHHHHHHHHHHHHhhccc--------hhh------hHhHHhHHHHhhhcccchH
Q psy3481 108 YSEKSINSILDYI------STSKNMELLQDFYETTLEALKDAKN--------DRL------WFKTNTKLGKLYFDREDFN 167 (340)
Q Consensus 108 ~~~k~i~~ild~~------~~~~~~~~~~~~~~~~~~~~~~~~~--------~rl------f~k~n~kL~~l~~~m~~~~ 167 (340)
--+--+..+..+- ....+....++-+....+.++.-.+ .|+ -.+-+...|+.++..+++.
T Consensus 79 ~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 79 DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 1111111111110 0012222233334444444431110 011 1123466788999999999
Q ss_pred HHHHHHHHHHhhcC
Q psy3481 168 KLSRILKQLHQSCQ 181 (340)
Q Consensus 168 ~lp~~l~~lH~~~k 181 (340)
.+-.-+..|...+.
T Consensus 159 aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 159 AAIIRFQYVIENYP 172 (203)
T ss_dssp HHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCC
Confidence 99999999999985
No 43
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.20 E-value=2.3 Score=38.44 Aligned_cols=141 Identities=9% Similarity=0.124 Sum_probs=82.7
Q ss_pred hcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHH
Q psy3481 36 YYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSIN 114 (340)
Q Consensus 36 y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~ 114 (340)
|..+..+ ...+.++|++.|++++... + .+.|.-.+...++.+++++|++++..+.|++++..- +.=+. ......
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~--~~~a~~ 111 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESRY-P-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPD--ADYAYY 111 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCc--hHHHHH
Confidence 4444443 4567899999999999876 2 346888899999999999999999999999998754 21111 000000
Q ss_pred HHHH-HhhcC----CChhHHHHHHHHHHHHHhh-ccch---hhhH----------hHHhHHHHhhhcccchHHHHHHHHH
Q psy3481 115 SILD-YISTS----KNMELLQDFYETTLEALKD-AKND---RLWF----------KTNTKLGKLYFDREDFNKLSRILKQ 175 (340)
Q Consensus 115 ~ild-~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~---rlf~----------k~n~kL~~l~~~m~~~~~lp~~l~~ 175 (340)
.+-. ++... .+....++-++...++++. ..+. +... .....++.+++.++++...-..+.+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 0000 00000 0001111112222222221 1111 1111 1234678899999999999999999
Q ss_pred HHhhcC
Q psy3481 176 LHQSCQ 181 (340)
Q Consensus 176 lH~~~k 181 (340)
+...+.
T Consensus 192 al~~~p 197 (235)
T TIGR03302 192 VVENYP 197 (235)
T ss_pred HHHHCC
Confidence 988875
No 44
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.73 E-value=4.3 Score=39.20 Aligned_cols=158 Identities=14% Similarity=0.078 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCC
Q psy3481 45 DDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSK 124 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~ 124 (340)
.+.++|++.+++++... .........++..++.++.++|++++....|++.+..- + ......+.+........
T Consensus 83 g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~-----~~~~~~~~la~~~~~~g 155 (389)
T PRK11788 83 GEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-D-----FAEGALQQLLEIYQQEK 155 (389)
T ss_pred CcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-c-----chHHHHHHHHHHHHHhc
Confidence 34555666666555533 21223334455566666666666666666666554321 0 11122233333222222
Q ss_pred ChhHHHHHHHHHHHHHhhcc-c-hhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHH
Q psy3481 125 NMELLQDFYETTLEALKDAK-N-DRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALE 202 (340)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~-~-~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~ale 202 (340)
+.+. -.+.....++... + ..........++.+++..++...+-..+.+..... |.. .+....-
T Consensus 156 ~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~----------~~~~~~l 220 (389)
T PRK11788 156 DWQK---AIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQC----------VRASILL 220 (389)
T ss_pred hHHH---HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCC----------HHHHHHH
Confidence 2111 1222222222211 1 11111233567778888888888888887776542 221 1122222
Q ss_pred HHHHHhhhchHHHHHHHHhhhh
Q psy3481 203 IQMYTAQKNNKKLKKLYEQSLH 224 (340)
Q Consensus 203 I~~~~~l~n~~~l~~~~~~~~~ 224 (340)
..++...++..+....+.....
T Consensus 221 a~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 221 GDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3455566676666666666543
No 45
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.28 E-value=1.8 Score=41.28 Aligned_cols=135 Identities=14% Similarity=0.150 Sum_probs=94.0
Q ss_pred CHHHHHHHHHhhccccc-ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC-
Q psy3481 46 DPKAALQSFQKVLDLES-GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS- 123 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~-~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~- 123 (340)
+.++|.+.|.+..+... .......=+++.+.++++.+. +++++.++|++.+......=....+++....+=..+...
T Consensus 50 ~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~ 128 (282)
T PF14938_consen 50 DWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQL 128 (282)
T ss_dssp -CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHc
Confidence 44678888887765432 122334557778888887666 999999999999987743323356778888888877766
Q ss_pred CChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcC
Q psy3481 124 KNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 181 (340)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~k 181 (340)
.+.+..-+.|+.+.+..+.....+.-..+-.+++.++...++|..+-..+.++-..+.
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 5666655667777776665554555556778999999999999999999999887753
No 46
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.19 E-value=5.7 Score=38.36 Aligned_cols=173 Identities=12% Similarity=0.184 Sum_probs=99.6
Q ss_pred hhhhhcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHH
Q psy3481 32 LENQYYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSE 110 (340)
Q Consensus 32 lEn~y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~ 110 (340)
.+=.|+.+... ...+.++|++.|++.++.+ +.. ..+...++.+++++|++++....+++++.. +..+.....
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~ 107 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD-PET----VELHLALGNLFRRRGEVDRAIRIHQNLLSR--PDLTREQRL 107 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcC-ccc----HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CCCCHHHHH
Confidence 44445555543 4567899999999999876 322 356777899999999999999999988652 222222222
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccc
Q psy3481 111 KSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLK 190 (340)
Q Consensus 111 k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~ 190 (340)
.....+...+....+.+...+.++. +++.. .-...+-..|+.++...+++..+...+.++......+..
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~---~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----- 176 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQ---LVDEG---DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR----- 176 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH---HHcCC---cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch-----
Confidence 2333444433333333322222222 22211 112234466888999999999999999988765332221
Q ss_pred cccchhHHHHHHHHHHHhhhchHHHHHHHHhhhh
Q psy3481 191 KGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLH 224 (340)
Q Consensus 191 ~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~ 224 (340)
..+...+..-...+...++.......+..+..
T Consensus 177 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 208 (389)
T PRK11788 177 --VEIAHFYCELAQQALARGDLDAARALLKKALA 208 (389)
T ss_pred --HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 11111111112244455666666666666543
No 47
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.41 E-value=1.5 Score=41.76 Aligned_cols=137 Identities=16% Similarity=0.170 Sum_probs=84.0
Q ss_pred ccccCCHHHHHHHHHhhccccc-ccchhhHHHHHHHHHHHHhhh-cCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHH
Q psy3481 41 ALKEDDPKAALQSFQKVLDLES-GERGEWGFKALKQMIKINFKL-SNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILD 118 (340)
Q Consensus 41 ~~~~~~~~~a~~~~~~v~~~~~-~~~~~w~fka~~q~~k~~~~~-~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild 118 (340)
.++..+|++|++.|++.++.-. ..+..-.=+.++.+.+++.+. |++++.+++|++-..+....=....+.+..+.+.+
T Consensus 84 ~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 84 CYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3456699999999999887431 122334467899999999999 99999999999999988544345566677777777
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhccchhh---hHh-HHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 119 YISTSKNMELLQDFYETTLEALKDAKNDRL---WFK-TNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl---f~k-~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
......+.+.. .+...+.++..-+..+ =++ .-++.+-+++.+++...+-+.+.+....+
T Consensus 164 l~~~l~~y~~A---~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 164 LYARLGRYEEA---IEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHTT-HHHH---HHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHhCCHHHH---HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 76555433322 3333333333322111 122 11333446667788777777777766443
No 48
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.36 E-value=0.1 Score=38.11 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=42.1
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
+..+.++|++.|++++... ++..+. .-.+++++.++|++++..+.+.+++..-
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~----~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEA----RLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHH----HHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4567899999999999987 444443 4479999999999999999998887654
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=92.06 E-value=4.5 Score=40.57 Aligned_cols=171 Identities=18% Similarity=0.228 Sum_probs=92.6
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH---Hhh---------hccchhhHHHHH
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL---YIK---------SAVTRNYSEKSI 113 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~---~~~---------~~v~k~~~~k~i 113 (340)
..+.||+.-|..++++ +-.++-+--|+.|+.+=|...|=+|-+=+.|.+|.. |-. =..+| .=+|.|
T Consensus 84 EvDRAIRiHQ~L~~sp-dlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~tr-eW~KAI 161 (389)
T COG2956 84 EVDRAIRIHQTLLESP-DLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATR-EWEKAI 161 (389)
T ss_pred hHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhh-HHHHHH
Confidence 3466777777777665 444556666666666666655555444333333322 000 01222 234444
Q ss_pred HHHHHHhhcCCC--hhHHHHHH-HHH------------HHHHhhc-cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHH
Q psy3481 114 NSILDYISTSKN--MELLQDFY-ETT------------LEALKDA-KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLH 177 (340)
Q Consensus 114 ~~ild~~~~~~~--~~~~~~~~-~~~------------~~~~~~~-~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH 177 (340)
+.-..+..-.+. .-.+-+|| |+. .+.++.| ..+..-.|+++-|+++..+.+++...-+.+..|.
T Consensus 162 d~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 162 DVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 444443332211 00111121 222 2222222 2233345678899999999999999998888887
Q ss_pred hhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhh
Q psy3481 178 QSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAI 229 (340)
Q Consensus 178 ~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si 229 (340)
.- . ..++-||.-.-.+-|+.++.......++......-.+.
T Consensus 242 eQ--n---------~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 242 EQ--N---------PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred Hh--C---------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 65 2 23455566555567888877777777777665444333
No 50
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=91.65 E-value=0.66 Score=33.63 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
..+.++|++.|+++++.. ++ .-.++..+..++.++|++++....|++.+.
T Consensus 10 ~g~~~~A~~~~~~~l~~~-P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQD-PD----NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp CTHHHHHHHHHHHHHCCS-TT----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356789999999999987 32 566788899999999999999999998875
No 51
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=91.63 E-value=0.53 Score=35.35 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=46.3
Q ss_pred cCCHHHHHHHHHhhccccc--ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 44 EDDPKAALQSFQKVLDLES--GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~--~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
..+.++|++.|++.++... ++.......++-.+..++.++|+++++++++++.+...
T Consensus 18 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 18 LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3567899999999998742 34445668899999999999999999999999988754
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=90.71 E-value=9.8 Score=32.50 Aligned_cols=123 Identities=14% Similarity=0.165 Sum_probs=76.0
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
...+.++|++.|++.++.. ++. ..+...+..++..+|++++..+.|++.+... +... .....+-.....
T Consensus 43 ~~~~~~~A~~~~~~~l~~~-p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~-----~~~~~~~~~~~~ 111 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHD-PDD----YLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNG-----DVLNNYGTFLCQ 111 (234)
T ss_pred HCCCHHHHHHHHHHHHHhC-ccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCH-----HHHHHHHHHHHH
Confidence 3567899999999998876 322 2466778899999999999999999998754 2211 122222222222
Q ss_pred CCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 123 SKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
..+.+.. .+...++++... ..........++.+++..+++..+-..+.+.....
T Consensus 112 ~g~~~~A---~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 112 QGKYEQA---MQQFEQAIEDPL-YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred cccHHHH---HHHHHHHHhccc-cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2222222 222233332211 11112234557888999999999998888887763
No 53
>KOG1840|consensus
Probab=90.57 E-value=4.7 Score=42.47 Aligned_cols=111 Identities=16% Similarity=0.249 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccc--hhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchh-
Q psy3481 71 KALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVT--RNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDR- 147 (340)
Q Consensus 71 ka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~--k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~r- 147 (340)
|-.-+|..+++++|++++..+.|++.++-.+..-. .....+.|+.|=.-+..+++-+-..+.|+.++...+.++++-
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 34457778999999999999999999987765555 366789999988777777665555667888887776666543
Q ss_pred hhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcC
Q psy3481 148 LWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 181 (340)
Q Consensus 148 lf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~k 181 (340)
--..+-..|+.+|=+||++..+-++..++....+
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVLNARE 481 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 4445778999999999999999999988886554
No 54
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=90.15 E-value=9.4 Score=34.41 Aligned_cols=129 Identities=9% Similarity=0.059 Sum_probs=77.5
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhh--------cCHHHHHHHHHHHHHHhhhccchhhHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKL--------SNYKEMMSRYKQLLLYIKSAVTRNYSEKSINS 115 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~--------~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ 115 (340)
..++++|+..|+++++..+ +..+.. .++-++..++++. |++++..+.+++++..- +.-. .+.+....
T Consensus 83 ~~~~~~A~~~~~~~l~~~p-~~~~~~-~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~--~~~~a~~~ 157 (235)
T TIGR03302 83 SGDYAEAIAAADRFIRLHP-NHPDAD-YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSE--YAPDAKKR 157 (235)
T ss_pred cCCHHHHHHHHHHHHHHCc-CCCchH-HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCCh--hHHHHHHH
Confidence 4678999999999998773 323322 2566666677665 78888888888887644 2211 11222211
Q ss_pred H--------------HHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 116 I--------------LDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 116 i--------------ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
+ -+......+. ++-.+...++++...+..-.......+++++..++++...-+.+..+-.++
T Consensus 158 ~~~~~~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 158 MDYLRNRLAGKELYVARFYLKRGAY---VAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1 1111111111 222344444444444444445667889999999999999988888887665
No 55
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.81 E-value=0.68 Score=30.52 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 72 ALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 72 a~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
|+.+|..++.++|+++++.++|++.+..-
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57889999999999999999999987543
No 56
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=89.25 E-value=31 Score=36.09 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=45.3
Q ss_pred hcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 36 YYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 36 y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
|..|+.. ...++++|+..|++.+... ++.. .+...++.+++++|++++.+..+++.+..
T Consensus 26 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 85 (899)
T TIGR02917 26 IEAAKSYLQKNKYKAAIIQLKNALQKD-PNDA----EARFLLGKIYLALGDYAAAEKELRKALSL 85 (899)
T ss_pred HHHHHHHHHcCChHhHHHHHHHHHHhC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4445443 4568899999999999876 3333 46667899999999999999999988753
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=89.08 E-value=13 Score=31.65 Aligned_cols=121 Identities=16% Similarity=0.204 Sum_probs=76.8
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS 123 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~ 123 (340)
..+.++|++.|++.++.. +... .+...+..++..+|++++..+.+.+.+..- . .+ ........+-......
T Consensus 78 ~~~~~~A~~~~~~al~~~-~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~-~~--~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 78 LGELEKAEDSFRRALTLN-PNNG----DVLNNYGTFLCQQGKYEQAMQQFEQAIEDP-L-YP--QPARSLENAGLCALKA 148 (234)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHhcc-c-cc--cchHHHHHHHHHHHHc
Confidence 457899999999999876 3222 366778899999999999999999987521 1 11 1111122222222222
Q ss_pred CChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 124 KNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
.+.+. -.+.+.++++...+. ......++.+++.++++..+-..+.+....
T Consensus 149 g~~~~---A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 149 GDFDK---AEKYLTRALQIDPQR---PESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred CCHHH---HHHHHHHHHHhCcCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22232 344444455443332 123347899999999999999999988776
No 58
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=88.99 E-value=1.3 Score=43.48 Aligned_cols=26 Identities=12% Similarity=-0.056 Sum_probs=19.5
Q ss_pred heecccCCCCCcccccccchhhHHHHHH
Q psy3481 244 IEAHEQNMEGLRFKVPLVPFVPGLSIFF 271 (340)
Q Consensus 244 ilR~~~p~~~r~FrvPlvP~iP~l~il~ 271 (340)
..|+++|+ .+||+|++|++|.+.++.
T Consensus 355 ~~r~~~~~--~~~~~~~~~~~~~~~~~~ 380 (381)
T TIGR00837 355 KARKKFPN--AGYRVWGGNKLLLLVLLF 380 (381)
T ss_pred HHHhcCCC--CCccccCChHHHHHHHHh
Confidence 34555554 499999999999987654
No 59
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=88.37 E-value=4 Score=39.10 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=50.7
Q ss_pred hhh-hcccccc--ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 33 ENQ-YYNSKAL--KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 33 En~-y~~ak~~--~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
|+. |..|-++ +..+.++|+..|++++..-+ + ....-.|...+.++++.+|++++.+..|+.++.-.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP-~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYP-D-STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY 210 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-C-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 444 4455554 45688999999999998762 2 34555788899999999999999999998887543
No 60
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=87.71 E-value=21 Score=37.68 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
..+.++|++.|+++++.+ ++. ..++..++.+++.+|++++....|++.+.
T Consensus 378 ~g~~~eA~~~~~~al~~~-p~~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLN-SED----PDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred CCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346677777777777665 221 12445566666667777777666666654
No 61
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=87.53 E-value=9.1 Score=32.42 Aligned_cols=68 Identities=15% Similarity=0.235 Sum_probs=45.3
Q ss_pred hccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHh
Q psy3481 142 DAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQ 221 (340)
Q Consensus 142 ~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~ 221 (340)
..++..+--.+.++|++++++.+++..+...|..+.+. ++ ... +..+.=.++...++....+..|..
T Consensus 77 ~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~---~~-------~~~---~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 77 NAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE---AF-------KAL---AAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc---ch-------HHH---HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33345555557889999999999999999888764332 22 111 222333466777888888888775
Q ss_pred h
Q psy3481 222 S 222 (340)
Q Consensus 222 ~ 222 (340)
+
T Consensus 144 A 144 (145)
T PF09976_consen 144 A 144 (145)
T ss_pred h
Confidence 4
No 62
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=87.31 E-value=35 Score=35.98 Aligned_cols=26 Identities=8% Similarity=0.211 Sum_probs=18.6
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
..|+.+++.++++..+-..+.+....
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45677777777777777777776654
No 63
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=86.91 E-value=1.4 Score=32.14 Aligned_cols=51 Identities=22% Similarity=0.431 Sum_probs=41.7
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhc-CHHHHHHHHHHHHH
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLS-NYKEMMSRYKQLLL 98 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~-~~~~~~~~~~~l~~ 98 (340)
...+.++|++.|++.++.+ ++.. .++-.+..++.++| ++++.+..+++.+.
T Consensus 15 ~~~~~~~A~~~~~~ai~~~-p~~~----~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 15 QQGDYEEAIEYFEKAIELD-PNNA----EAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HTTHHHHHHHHHHHHHHHS-TTHH----HHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCH----HHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456799999999999987 3322 28889999999999 79999999988765
No 64
>PLN03218 maturation of RBCL 1; Provisional
Probab=86.80 E-value=46 Score=38.25 Aligned_cols=26 Identities=8% Similarity=0.167 Sum_probs=14.6
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
..|+..+...++...+-.++.++...
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~ 713 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSI 713 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 44555555556666666666655543
No 65
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=86.30 E-value=4.1 Score=34.31 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=51.0
Q ss_pred hhhhhcccc------ccccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhh
Q psy3481 32 LENQYYNSK------ALKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKS 102 (340)
Q Consensus 32 lEn~y~~ak------~~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~ 102 (340)
++++|.++- .....++++|++..++.+..+ .....+...+++++.++|+..++++.|.++...++.
T Consensus 57 l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-----P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 57 LRELYLDALERLAEALLEAGDYEEALRLLQRALALD-----PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-----TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 666666552 234568899999999999887 356678899999999999999999999999887753
No 66
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=86.21 E-value=2 Score=41.16 Aligned_cols=56 Identities=13% Similarity=0.059 Sum_probs=48.8
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
...+.++|+..|+++++.. + ...|...|+..++.++.++|++++....|++++.-.
T Consensus 192 ~~g~~~~A~~~f~~vv~~y-P-~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 192 NKGKKDDAAYYFASVVKNY-P-KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HcCCHHHHHHHHHHHHHHC-C-CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3567899999999999876 2 357999999999999999999999999999997655
No 67
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=86.08 E-value=0.23 Score=48.57 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHh
Q psy3481 174 KQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRGLF 242 (340)
Q Consensus 174 ~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~~~vv~~~l 242 (340)
.+=||||..|+.+... +.+++.|+.+ +.. .-.++..-+.+.++-+++++.++.+++.+++
T Consensus 12 ~~r~pr~p~~~a~l~~--~~llll~ail---~w~----~iimsd~t~~a~~vl~sfAvvliiIIiIIml 71 (381)
T PF05297_consen 12 GRRPPRCPQPHASLLF--GLLLLLVAIL---VWF----FIIMSDLTQGALTVLYSFAVVLIIIIIIIML 71 (381)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCCCCCCCCcchhHHH--HHHHHHHHHH---HHH----HHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3568899888865333 4454444433 111 1123333344445556666554444444333
No 68
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=85.40 E-value=9.6 Score=29.75 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=44.0
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
...+.++|++.|++++... ++ ....-.+.-.++.++++.|++++.+++|++++..
T Consensus 14 ~~~~~~~A~~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 68 (119)
T TIGR02795 14 KAGDYADAIQAFQAFLKKY-PK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK 68 (119)
T ss_pred HcCCHHHHHHHHHHHHHHC-CC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 4567799999999998765 22 2334577888999999999999999999988763
No 69
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=84.81 E-value=11 Score=28.07 Aligned_cols=66 Identities=14% Similarity=0.273 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchh--hHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q psy3481 70 FKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRN--YSEKSINSILDYISTSKNMELLQDFYETT 136 (340)
Q Consensus 70 fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~--~~~k~i~~ild~~~~~~~~~~~~~~~~~~ 136 (340)
=.++..+..+++.+|++++.+++|++.+... ..++.. ......++|=.......+.+...+.++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3577889999999999999999999999974 444432 23445555544444443333333333333
No 70
>PLN03218 maturation of RBCL 1; Provisional
Probab=84.46 E-value=79 Score=36.41 Aligned_cols=75 Identities=11% Similarity=0.166 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCC
Q psy3481 45 DDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSK 124 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~ 124 (340)
.+.++|.+.|++..+... +.... ..-.||..+++.|+++++++.|.+++. ..+..+ ....+.+|+.+....
T Consensus 486 G~vd~A~~vf~eM~~~Gv-~Pdvv---TynaLI~gy~k~G~~eeAl~lf~~M~~---~Gv~PD--~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 486 GKVDAMFEVFHEMVNAGV-EANVH---TFGALIDGCARAGQVAKAFGAYGIMRS---KNVKPD--RVVFNALISACGQSG 556 (1060)
T ss_pred cCHHHHHHHHHHHHHcCC-CCCHH---HHHHHHHHHHHCcCHHHHHHHHHHHHH---cCCCCC--HHHHHHHHHHHHHCC
Confidence 345566666666554321 11122 334457778888888888888877754 122222 334566666665554
Q ss_pred ChhH
Q psy3481 125 NMEL 128 (340)
Q Consensus 125 ~~~~ 128 (340)
+.+.
T Consensus 557 ~~de 560 (1060)
T PLN03218 557 AVDR 560 (1060)
T ss_pred CHHH
Confidence 4443
No 71
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=84.27 E-value=24 Score=29.79 Aligned_cols=120 Identities=15% Similarity=0.248 Sum_probs=75.4
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
...++..+.+.+++++... .+..+.-.+.-.+.++++..|++++....|+.++.-- .. ..++.+..+-..
T Consensus 23 ~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d-----~~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PD-----PELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CC-----HHHHHHHHHHHH
Confidence 4567778888899988865 2345778888889999999999999999999886622 11 112222211000
Q ss_pred CCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHH
Q psy3481 123 SKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILK 174 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~ 174 (340)
....-+..|+..+..|+...+...-......++.+++.+++...+-....
T Consensus 93 --~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 93 --RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred --HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 00112335666666665443333222355678889999999887765543
No 72
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=83.85 E-value=40 Score=32.57 Aligned_cols=143 Identities=9% Similarity=0.191 Sum_probs=85.6
Q ss_pred hcccc-ccccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHH
Q psy3481 36 YYNSK-ALKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSIN 114 (340)
Q Consensus 36 y~~ak-~~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~ 114 (340)
|-.+. .+...|-++|++.|+++.... ..++|..|++-.++..++|.+++++......+.+...-.+-.=.|+ -=|+
T Consensus 38 Y~~g~~~L~~gn~~~A~~~fe~l~~~~--p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~-~Ylk 114 (254)
T COG4105 38 YNEGLTELQKGNYEEAIKYFEALDSRH--PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA-YYLK 114 (254)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH-HHHH
Confidence 44443 356778899999999998655 4578999999999999999999999887777765543111111111 1222
Q ss_pred HHHHHhhc---CCChhHHHHHHHHHHHHHhhccch--------h-hh-----HhHHhHHHHhhhcccchHHHHHHHHHHH
Q psy3481 115 SILDYIST---SKNMELLQDFYETTLEALKDAKND--------R-LW-----FKTNTKLGKLYFDREDFNKLSRILKQLH 177 (340)
Q Consensus 115 ~ild~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--------r-lf-----~k~n~kL~~l~~~m~~~~~lp~~l~~lH 177 (340)
.+..++.- .++.....+-+....+.|+.-.|. | .+ +.-+.-.++.|+..+.+-.+-.-+..+.
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~ 194 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVL 194 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 33322221 112222333344444444321111 1 11 1235666678888888888888888888
Q ss_pred hhcC
Q psy3481 178 QSCQ 181 (340)
Q Consensus 178 ~~~k 181 (340)
..+.
T Consensus 195 e~y~ 198 (254)
T COG4105 195 ENYP 198 (254)
T ss_pred hccc
Confidence 7764
No 73
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=83.51 E-value=19 Score=40.18 Aligned_cols=89 Identities=19% Similarity=0.198 Sum_probs=47.6
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHHhhc---CCChhHHHHHHHHHHHHHh-hccch-hhhHhHHhHHHHhhhcccchH
Q psy3481 93 YKQLLLYIKSAVTRNYSEKSINSILDYIST---SKNMELLQDFYETTLEALK-DAKND-RLWFKTNTKLGKLYFDREDFN 167 (340)
Q Consensus 93 ~~~l~~~~~~~v~k~~~~k~i~~ild~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~-rlf~k~n~kL~~l~~~m~~~~ 167 (340)
|.+++..+ ..++-.....+|..|+..... ..|.+-++.|+.+.++.+. .+.+. ...+.+=-.|++.+|.|+...
T Consensus 428 ~eel~~lL-~~~~~~~~~~iI~RIrk~~hpsLa~~NK~Kl~~f~~vLlq~i~~la~~~~~~~~~~ld~L~~~L~~Laq~~ 506 (840)
T PF04147_consen 428 HEELLELL-DGYSPEDQPTIIQRIRKCYHPSLAEGNKEKLQVFFGVLLQHILYLASQDSPPPFEVLDSLIPHLYDLAQKY 506 (840)
T ss_pred HHHHHHHH-hcCCHHHHhHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHH
Confidence 33344434 233333444444444443322 2455667777777777764 34444 666666566777777776653
Q ss_pred ------HHHHHHHHHHhhcCC
Q psy3481 168 ------KLSRILKQLHQSCQT 182 (340)
Q Consensus 168 ------~lp~~l~~lH~~~kt 182 (340)
.+-.+|..+|.+++.
T Consensus 507 p~~~a~~~r~~L~~~~~~~~~ 527 (840)
T PF04147_consen 507 PEEAAECFREVLKEMQKRFRK 527 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 223555666655543
No 74
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=82.84 E-value=7.6 Score=34.22 Aligned_cols=69 Identities=14% Similarity=0.295 Sum_probs=56.6
Q ss_pred hhccccc-cccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccch
Q psy3481 35 QYYNSKA-LKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTR 106 (340)
Q Consensus 35 ~y~~ak~-~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k 106 (340)
-|-.|+. +.+.+-++|++.|+.|...- ..|+|.-+|--.++-.+++.+++++....|++++.. ++.-++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ry--P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-hP~hp~ 82 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRY--PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-HPTHPN 82 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCCC
Confidence 3777765 56677799999999997765 458899999999999999999999999999998874 465443
No 75
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=82.62 E-value=14 Score=25.78 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=14.0
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHh
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQ 178 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~ 178 (340)
..++.+++.++++...-..+.++..
T Consensus 72 ~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 72 YNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 4455556666666665555555443
No 76
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=82.62 E-value=23 Score=33.09 Aligned_cols=94 Identities=14% Similarity=0.204 Sum_probs=48.9
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh-ccchhhhHh
Q psy3481 73 LKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKD-AKNDRLWFK 151 (340)
Q Consensus 73 ~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~-~~~~rlf~k 151 (340)
+..++.++.+.|+.++.+..|++.+..- |. .....+.++.......+.+.+ -+.+....+. ..+..+|
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~-----~~~~~~~l~~~li~~~~~~~~---~~~l~~~~~~~~~~~~~~-- 217 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELD-PD-----DPDARNALAWLLIDMGDYDEA---REALKRLLKAAPDDPDLW-- 217 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH--TT------HHHHHHHHHHHCTTCHHHHH---HHHHHHHHHH-HTSCCHC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC-----CHHHHHHHHHHHHHCCChHHH---HHHHHHHHHHCcCHHHHH--
Confidence 3344456666666666666666665533 21 223344444443322222221 1222222222 2344555
Q ss_pred HHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 152 TNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 152 ~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
..++.+++..++...+..++.+....
T Consensus 218 --~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 218 --DALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp --HHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred --HHHHHHhccccccccccccccccccc
Confidence 45688888888899888888888775
No 77
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=82.56 E-value=67 Score=33.61 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=16.5
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
..++.++...++....-.++..+...
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566666666666666666666554
No 78
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.29 E-value=24 Score=31.70 Aligned_cols=112 Identities=10% Similarity=0.090 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccch
Q psy3481 67 EWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKND 146 (340)
Q Consensus 67 ~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (340)
+-.=.++..++..|.+.|+.+++++.|.+.+.|.. +....-...-++|.-----.|...++..++.+...++.....
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~ 109 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT---SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW 109 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH
Confidence 45567899999999999999999999999999872 222222222223332222356777788888888887765431
Q ss_pred hhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcC
Q psy3481 147 RLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 181 (340)
Q Consensus 147 rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~k 181 (340)
-.-.|...--+-..+..++|..+-..|-++.+.+.
T Consensus 110 ~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 110 ERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 11111223333345567899999888888887775
No 79
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=81.08 E-value=5.4 Score=29.20 Aligned_cols=53 Identities=21% Similarity=0.377 Sum_probs=42.4
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
...+.++|++.++.++..++.. .....+...+++++|++++.++.+.+.+..-
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDD-----PELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCccc-----chhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4567899999999999987433 3344556789999999999999999988644
No 80
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=81.00 E-value=28 Score=34.79 Aligned_cols=123 Identities=9% Similarity=0.164 Sum_probs=66.9
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHH----HHHHHHHH
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSE----KSINSILD 118 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~----k~i~~ild 118 (340)
...++++|++.+++.++.+ +++. .+++.+..++.++|+++++.+.+.++.... ..+....+ .....++.
T Consensus 165 ~~g~~~~Al~~l~~~~~~~-P~~~----~al~ll~~~~~~~gdw~~a~~~l~~l~k~~--~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVA-PRHP----EVLRLAEQAYIRTGAWSSLLDILPSMAKAH--VGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HCCCHHHHHHHHHHHHhcC-CCCH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHH
Confidence 3556677777777777665 3221 456666777777788887777777776533 22222222 11112222
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHh
Q psy3481 119 YISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQ 178 (340)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~ 178 (340)
......+.+.+.+..+..- +..+-...+-..+++.+...++...+-+.+.+..+
T Consensus 238 ~~~~~~~~~~l~~~w~~lp------~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQS------RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHhcCHHHHHHHHHhCC------HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2222222222211111110 11122233457788899999999999999988876
No 81
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=80.24 E-value=2.9 Score=32.00 Aligned_cols=48 Identities=17% Similarity=0.362 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q psy3481 45 DDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQ 95 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~ 95 (340)
.+.+.|+..|+++++.++.+ . ....+-.++.+++++|+|+++.+.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~--~-~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTN--P-NSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGT--H-HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCC--h-hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35689999999999987321 2 455677799999999999999998877
No 82
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=79.96 E-value=7.4 Score=35.34 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchh
Q psy3481 47 PKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRN 107 (340)
Q Consensus 47 ~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~ 107 (340)
.++|++.+++.+..++.+ . .++-.+.-.++++|++++...++++++....+.++|.
T Consensus 126 ~~~A~~~l~~al~~dP~~-~----~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 126 TPQTREMIDKALALDANE-V----TALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred cHHHHHHHHHHHHhCCCC-h----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 467777777777766322 1 3666677788899999999999999988886777774
No 83
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=79.88 E-value=18 Score=25.22 Aligned_cols=52 Identities=25% Similarity=0.429 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
..+.++|++.|+++++.. +... .+...+..++..++++++..+.+++.+...
T Consensus 13 ~~~~~~A~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 13 LGDYDEALEYYEKALELD-PDNA----DAYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HhcHHHHHHHHHHHHhcC-CccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456789999999999876 3222 667788899999999999999998887643
No 84
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=78.72 E-value=98 Score=33.87 Aligned_cols=30 Identities=10% Similarity=-0.093 Sum_probs=24.7
Q ss_pred HhHHHHhhhcccchHHHHHHHHHHHhhcCCCC
Q psy3481 153 NTKLGKLYFDREDFNKLSRILKQLHQSCQTDD 184 (340)
Q Consensus 153 n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~ 184 (340)
-..++.++..+++...+-..+.++.... |+
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd 425 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLE--PR 425 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC
Confidence 3678889999999999999999888764 55
No 85
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=78.57 E-value=16 Score=40.27 Aligned_cols=20 Identities=10% Similarity=-0.207 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHHHH-hhhh
Q psy3481 280 NVLTWLRFIIWMALEC-GGKM 299 (340)
Q Consensus 280 ~~~tw~~~~vW~~iG~-YG~r 299 (340)
++.+-....+-+++|. ||+|
T Consensus 621 ~~~ta~v~ai~lGiGvDYsIh 641 (727)
T COG1033 621 TPATATLGAIILGIGVDYSIH 641 (727)
T ss_pred hHHHHHHHHHhhhccchhhhH
Confidence 4444555555566666 8776
No 86
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=77.41 E-value=31 Score=26.73 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhH
Q psy3481 71 KALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWF 150 (340)
Q Consensus 71 ka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~ 150 (340)
+.+-+.+..+.++|++++..+.+++++.-- +.- .+....-..+-.......+.+ +-.+...++++...+.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~p~~~~~~ 76 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKS--TYAPNAHYWLGEAYYAQGKYA---DAAKAFLAVVKKYPKSPKAP 76 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCc--cccHHHHHHHHHHHHhhccHH---HHHHHHHHHHHHCCCCCccc
Confidence 456778889999999999999999997643 210 011222222222222222222 23344444444333333223
Q ss_pred hHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 151 KTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 151 k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
..-..++.++..+++...+...+.++....
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 345778889999999999999999988885
No 87
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=77.31 E-value=6.3 Score=24.46 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 71 KALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 71 ka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
+++-++..+++++|++++..+.|++.+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999998764
No 88
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.24 E-value=4.1 Score=25.08 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 72 ALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 72 a~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
|+-++..++.++|++++..+.+++++.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6788999999999999999999998753
No 89
>KOG0543|consensus
Probab=76.16 E-value=47 Score=34.09 Aligned_cols=114 Identities=11% Similarity=0.227 Sum_probs=72.7
Q ss_pred HHHHhhhcCHHHHHHHHHHHHHHhhh--ccch--hhHHHHHHHHHH-HhhcCC-ChhHHHHHHHHHHHHHh-hccc-hhh
Q psy3481 77 IKINFKLSNYKEMMSRYKQLLLYIKS--AVTR--NYSEKSINSILD-YISTSK-NMELLQDFYETTLEALK-DAKN-DRL 148 (340)
Q Consensus 77 ~k~~~~~~~~~~~~~~~~~l~~~~~~--~v~k--~~~~k~i~~ild-~~~~~~-~~~~~~~~~~~~~~~~~-~~~~-~rl 148 (340)
..-+||.|+|..+...|+..+.++.. ..+- .+..+.++.... .++-.. -+..-..-.+.|..+|+ +.+| ++|
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 36899999999999999998888841 1221 122222222221 121110 01111345677777776 3455 888
Q ss_pred hHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHH
Q psy3481 149 WFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEI 203 (340)
Q Consensus 149 f~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI 203 (340)
| |.++.+.+++++..+-..|.++... +|.++..=.+++.|-.
T Consensus 295 y-----RrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 295 Y-----RRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQ 336 (397)
T ss_pred H-----HHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHH
Confidence 7 7788999999999999999999887 3335666666666643
No 90
>KOG4234|consensus
Probab=75.82 E-value=51 Score=31.41 Aligned_cols=120 Identities=22% Similarity=0.196 Sum_probs=73.3
Q ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhH
Q psy3481 49 AALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMEL 128 (340)
Q Consensus 49 ~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~ 128 (340)
+-+....++++.+..++..-.-..+|.=..=+|+.|.|+++.+.|..-+....+.-+ -.|+|+= ++. ..-+
T Consensus 74 eLmae~E~i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~------e~rsIly--~Nr-aaa~ 144 (271)
T KOG4234|consen 74 ELMAEIEKIFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST------EERSILY--SNR-AAAL 144 (271)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH------HHHHHHH--hhh-HHHH
Confidence 333456666665312333344456777777899999999999999999987743333 2455542 111 1122
Q ss_pred HHHHHHHHHHHHhhc-cchhhhHh---HHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 129 LQDFYETTLEALKDA-KNDRLWFK---TNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 129 ~~~~~~~~~~~~~~~-~~~rlf~k---~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
+ ..+.+..+|++| |.--||-+ +-.|.|.+|=.|-++.....-..+|...
T Consensus 145 i--Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 145 I--KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred H--HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 2 344555555555 33344443 3356677888888888888777777766
No 91
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=75.38 E-value=53 Score=37.69 Aligned_cols=125 Identities=13% Similarity=0.114 Sum_probs=75.0
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccch-hhHHHHHHH------
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTR-NYSEKSINS------ 115 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k-~~~~k~i~~------ 115 (340)
...+.++|++.|++++... ++. -.++-.+..++.++|+++++...|++.+..- +.-.. .+....+..
T Consensus 281 ~~g~~~~A~~~l~~aL~~~-P~~----~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRAN-PKD----SEALGALGQAYSQQGDRARAVAQFEKALALD-PHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCccchhHHHHHHHhhhHHHH
Confidence 4567899999999999877 332 3567789999999999999999999987644 22111 111111110
Q ss_pred --HHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 116 --ILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 116 --ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
.-+......+.+ +-.+...++++-..++ ..+...|+.++...+++..+...+.++...
T Consensus 355 ~~~g~~~~~~g~~~---eA~~~~~~Al~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 355 IQQGDAALKANNLA---QAERLYQQARQVDNTD---SYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred HHHHHHHHHCCCHH---HHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 001111111222 2233333333322221 123456788888888888888888887754
No 92
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=75.28 E-value=98 Score=33.20 Aligned_cols=22 Identities=9% Similarity=0.244 Sum_probs=17.6
Q ss_pred HHHHHHhhhcCHHHHHHHHHHH
Q psy3481 75 QMIKINFKLSNYKEMMSRYKQL 96 (340)
Q Consensus 75 q~~k~~~~~~~~~~~~~~~~~l 96 (340)
.++..|.|.|+.+++.+.+.++
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m 285 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGM 285 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhC
Confidence 4577888899998888888765
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=74.79 E-value=79 Score=30.05 Aligned_cols=70 Identities=16% Similarity=0.066 Sum_probs=46.5
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhh
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIK 226 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~ 226 (340)
...++++...++...+-..+..+....+.+. +.......+++-++.-..+...+|.......+..+...+
T Consensus 268 ~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 268 LHAALALAGAGDKDALDKLLAALKGRASSAD---DNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccC---chhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4677888889999999999999988776521 111234455666666667777788777666665554433
No 94
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.12 E-value=8.9 Score=23.93 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 71 KALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 71 ka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
+++-.+.+++.++|+++++.+.|++.+.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45678889999999999999999998774
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=73.58 E-value=71 Score=28.93 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=77.3
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHH--Hhh
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILD--YIS 121 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild--~~~ 121 (340)
..+.++++..+++.+..+++... +...+..++...|++++....|++.+..- +.-. .....+-. +..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~-----~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~-----~~~~~lA~aL~~~ 120 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSE-----QWALLGEYYLWRNDYDNALLAYRQALQLR-GENA-----ELYAALATVLYYQ 120 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHh
Confidence 45668999999999998733322 45667889999999999999999998754 3211 11122222 122
Q ss_pred cCCChhHHHHHHHHHHHHHhhc-cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 122 TSKNMELLQDFYETTLEALKDA-KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~-~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
.... ...+-.+...++++-. ++- ++-..|+..++..+++..+-..+.++...-
T Consensus 121 ~g~~--~~~~A~~~l~~al~~dP~~~----~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 121 AGQH--MTPQTREMIDKALALDANEV----TALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred cCCC--CcHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1111 0122334444444433 332 344668999999999999999999987764
No 96
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=73.56 E-value=63 Score=37.10 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=44.2
Q ss_pred cccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 42 LKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 42 ~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
++..+.++|++.|++++..+ ++. ..++..+..++.++|++++..+.|++.+..
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~-P~~----~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVD-NTD----SYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 35678899999999999987 322 247778899999999999999999999863
No 97
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=72.99 E-value=54 Score=27.35 Aligned_cols=103 Identities=18% Similarity=0.339 Sum_probs=65.9
Q ss_pred hhhhccccc-cccCCHHHHHHHHHhhccccc-----c-cchhhH-----------HHHHHHHHHHHhhhcCHHHHHHHHH
Q psy3481 33 ENQYYNSKA-LKEDDPKAALQSFQKVLDLES-----G-ERGEWG-----------FKALKQMIKINFKLSNYKEMMSRYK 94 (340)
Q Consensus 33 En~y~~ak~-~~~~~~~~a~~~~~~v~~~~~-----~-~~~~w~-----------fka~~q~~k~~~~~~~~~~~~~~~~ 94 (340)
|+-.-.+.. ....+|+.+++.+++.++.=. + ....|. ..++++++..+...|+++++...++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 333333433 345689999999999986433 1 223554 4566777778888888888888888
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q psy3481 95 QLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALK 141 (340)
Q Consensus 95 ~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~ 141 (340)
+++..= .+.|..-..++.......+.....+.|+.+...+.
T Consensus 87 ~~l~~d------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 87 RALALD------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHS------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHhcC------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 887643 34677777777777666666666677887777665
No 98
>KOG1585|consensus
Probab=72.32 E-value=13 Score=36.17 Aligned_cols=57 Identities=25% Similarity=0.480 Sum_probs=44.8
Q ss_pred ccccccCCHHHHHHHHHhhccc-ccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q psy3481 39 SKALKEDDPKAALQSFQKVLDL-ESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQ 95 (340)
Q Consensus 39 ak~~~~~~~~~a~~~~~~v~~~-~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~ 95 (340)
||.++..+|+.|++.||.-+.. +.+++.+-.|.-+-+...++.+.++++|....+.+
T Consensus 118 ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 118 AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 6788899999999999986542 11466778888899999999999999886554443
No 99
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=72.12 E-value=16 Score=31.81 Aligned_cols=66 Identities=18% Similarity=0.142 Sum_probs=49.4
Q ss_pred hhhhcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 33 ENQYYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 33 En~y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
...|.-+..+ ...+.++|++.|+++++... . ..+.-.++..++.++.+.|++++....|++.+..-
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEE-D-PNDRSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-c-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3444445444 45788999999999997652 1 22334678899999999999999999999888754
No 100
>KOG2300|consensus
Probab=71.06 E-value=1.5e+02 Score=31.65 Aligned_cols=145 Identities=18% Similarity=0.197 Sum_probs=86.1
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHHhhh----ccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhh
Q psy3481 73 LKQMIKINFKLSNYKEMMSRYKQLLLYIKS----AVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRL 148 (340)
Q Consensus 73 ~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~----~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl 148 (340)
|+.++-+..-.|++.+.++-+.+++..... .+.|+ .+--|-.++-.++-+-| ..+.--.-+.+|.+.....-+
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~-~~~~ih~LlGlys~sv~--~~enAe~hf~~a~k~t~~~dl 402 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRA-HEAQIHMLLGLYSHSVN--CYENAEFHFIEATKLTESIDL 402 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHH-hHHHHHHHHhhHhhhcc--hHHHHHHHHHHHHHhhhHHHH
Confidence 444445556678888888888888877631 23443 33345555655554432 111122234455555666789
Q ss_pred hHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHH-HHHHHHH-hhhchHHHHHHHHhhhhhh
Q psy3481 149 WFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYA-LEIQMYT-AQKNNKKLKKLYEQSLHIK 226 (340)
Q Consensus 149 f~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~a-leI~~~~-~l~n~~~l~~~~~~~~~i~ 226 (340)
|+-+|+.||-+|+-.++...+-+++..|-|.-+.+. .++-++-.+ .-..+++ ..+.....+.+..-...++
T Consensus 403 ~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~-------ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 403 QAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSL-------SSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcc-------hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 999999999999999999999988888877654443 333343211 1111111 2344566666666665555
Q ss_pred h
Q psy3481 227 S 227 (340)
Q Consensus 227 ~ 227 (340)
+
T Consensus 476 n 476 (629)
T KOG2300|consen 476 N 476 (629)
T ss_pred c
Confidence 3
No 101
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=71.06 E-value=33 Score=27.83 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
..+.++|++.|++++... + +...+...+..++.++|++++....+++.+..-
T Consensus 30 ~~~~~~A~~~~~~~~~~~-p----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 30 QGRYDEALKLFQLLAAYD-P----YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred cccHHHHHHHHHHHHHhC-C----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456789999999998876 2 234566788999999999999999999887643
No 102
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=69.40 E-value=1.6e+02 Score=31.61 Aligned_cols=116 Identities=14% Similarity=0.089 Sum_probs=69.2
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS 123 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~ 123 (340)
..+.++|.+.|+++...+ . .+.--|+..|.+.|+.+++++.|++++.- .+..+ ....++++..+...
T Consensus 272 ~g~~~~A~~vf~~m~~~~---~-----vt~n~li~~y~~~g~~~eA~~lf~~M~~~---g~~pd--~~t~~~ll~a~~~~ 338 (697)
T PLN03081 272 CGDIEDARCVFDGMPEKT---T-----VAWNSMLAGYALHGYSEEALCLYYEMRDS---GVSID--QFTFSIMIRIFSRL 338 (697)
T ss_pred CCCHHHHHHHHHhCCCCC---h-----hHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC--HHHHHHHHHHHHhc
Confidence 456789999998874332 1 23456899999999999999999998642 22221 23567777777655
Q ss_pred CChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHH
Q psy3481 124 KNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLH 177 (340)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH 177 (340)
...+...+.++..++ .. -..-..+.+.|+..|-..++...+-.+|.++.
T Consensus 339 g~~~~a~~i~~~m~~---~g--~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 339 ALLEHAKQAHAGLIR---TG--FPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred cchHHHHHHHHHHHH---hC--CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 444443333333222 11 00111233556666666666666666666553
No 103
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=68.32 E-value=12 Score=24.03 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHHhh
Q psy3481 71 KALKQMIKINFKLSNYKEMMSRYKQLLLYIK 101 (340)
Q Consensus 71 ka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~ 101 (340)
.++..+...+..+|++++...++++.+..-+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 3677889999999999999999999988653
No 104
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=67.65 E-value=59 Score=36.38 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=40.1
Q ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHHHh---hhcCHHHHHHHHHHHHHHhhhccchh---hHHHHHHHHHHHh
Q psy3481 50 ALQSFQKVLDLESGERGEWGFKALKQMIKINF---KLSNYKEMMSRYKQLLLYIKSAVTRN---YSEKSINSILDYI 120 (340)
Q Consensus 50 a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~---~~~~~~~~~~~~~~l~~~~~~~v~k~---~~~k~i~~ild~~ 120 (340)
..+.|.+++..- ..+-....++.++++|- ..+|-+.|-..+.-|+.|+. .++.. ..-+.|+.|+-++
T Consensus 427 s~eel~~lL~~~---~~~~~~~iI~RIrk~~hpsLa~~NK~Kl~~f~~vLlq~i~-~la~~~~~~~~~~ld~L~~~L 499 (840)
T PF04147_consen 427 SHEELLELLDGY---SPEDQPTIIQRIRKCYHPSLAEGNKEKLQVFFGVLLQHIL-YLASQDSPPPFEVLDSLIPHL 499 (840)
T ss_pred CHHHHHHHHhcC---CHHHHhHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHH
Confidence 345566666643 23446677777777654 35788888888888888883 22221 2344455555544
No 105
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=65.88 E-value=16 Score=22.79 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 71 KALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 71 ka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
+++-.++.++..+|++++.+..|++.+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45677889999999999999999998764
No 106
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=65.60 E-value=35 Score=27.68 Aligned_cols=53 Identities=6% Similarity=0.059 Sum_probs=41.2
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
+..+.++|++.|+++++.. ++ .......+..++.+.|++++.+..+++.+..-
T Consensus 63 ~~~~~~~A~~~~~~~~~~~-p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 63 MLKEYEEAIDAYALAAALD-PD----DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHHHHHHhcC-CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3456789999999998876 22 23444667789999999999999998887765
No 107
>PRK12370 invasion protein regulator; Provisional
Probab=65.32 E-value=1e+02 Score=32.30 Aligned_cols=26 Identities=4% Similarity=0.010 Sum_probs=20.0
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
..|+.++...++...+-..+.++.+.
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 44677777888888888888887666
No 108
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=65.07 E-value=26 Score=29.64 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=47.6
Q ss_pred hccccccc-cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 36 YYNSKALK-EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 36 y~~ak~~~-~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
|..|-.+. ..++++|+..|++.+... -.++-...++-++.-.+..+|++++....+++.+.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAG--LSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444332 346899999999998854 33566778999999999999999999999888765
No 109
>KOG1824|consensus
Probab=64.16 E-value=3 Score=46.80 Aligned_cols=17 Identities=41% Similarity=0.626 Sum_probs=9.9
Q ss_pred ccccccc--cccCCCCCCC
Q psy3481 11 DEEEDYG--LEYSEDSNSE 27 (340)
Q Consensus 11 d~~e~y~--~~~~~~~~~~ 27 (340)
||+|||+ .||+|||+=.
T Consensus 327 ed~eDde~~deYsDDeD~S 345 (1233)
T KOG1824|consen 327 EDEEDDEQDDEYSDDEDMS 345 (1233)
T ss_pred hccccchhccccccccchh
Confidence 3445554 7787776533
No 110
>PLN03077 Protein ECB2; Provisional
Probab=63.98 E-value=1e+02 Score=33.95 Aligned_cols=48 Identities=13% Similarity=-0.006 Sum_probs=34.8
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
+..+.++|.+.|++....+ .. +.-.++..+.+.|+++++++.|+++..
T Consensus 335 k~g~~~~A~~vf~~m~~~d---~~-----s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 335 SLGSWGEAEKVFSRMETKD---AV-----SWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred hcCCHHHHHHHHhhCCCCC---ee-----eHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3467788999998875322 22 345678888899999998888888743
No 111
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=63.25 E-value=83 Score=31.19 Aligned_cols=62 Identities=19% Similarity=0.363 Sum_probs=47.8
Q ss_pred ccccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhh
Q psy3481 41 ALKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNY 108 (340)
Q Consensus 41 ~~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~ 108 (340)
++...+.++|++.|++.+..++.. ..++-.+..++.++|++++++..+++.+..- +....++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~-----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~ 73 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNN-----AELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAY 73 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHH
Confidence 456678899999999999987322 2466788889999999999999999998754 5444433
No 112
>PRK11189 lipoprotein NlpI; Provisional
Probab=62.20 E-value=1.5e+02 Score=28.33 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
..+.++|++.|++.++.+ ++. ..++..++.++...|++++.++.+++.+.
T Consensus 111 ~g~~~~A~~~~~~Al~l~-P~~----~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELD-PTY----NYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455677888888887766 221 12456677778888888888888877665
No 113
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=61.92 E-value=19 Score=33.11 Aligned_cols=70 Identities=24% Similarity=0.349 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccc
Q psy3481 67 EWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKN 145 (340)
Q Consensus 67 ~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (340)
.-..++|.+|+...-.-| +++.-+|+|++|.++-..+|+ +.+..-+|| .....+.+.++.|++.+|...-
T Consensus 98 ~~~L~~Lq~Lv~~~~~vG--~aLvPyyrqLLp~ln~f~~k~---~n~gd~i~y----~~~~~~~dlI~etL~~lE~~GG 167 (183)
T PF10274_consen 98 CATLKALQQLVTSSDMVG--EALVPYYRQLLPVLNLFKNKN---VNLGDGIDY----RKRKNLGDLIQETLELLERNGG 167 (183)
T ss_pred HHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHHHhcc---cCCCccccc----ccccchhHHHHHHHHHHHHhcC
Confidence 344455555555555555 789999999999884222333 223334555 2234466789999999987744
No 114
>PLN03077 Protein ECB2; Provisional
Probab=61.30 E-value=2.6e+02 Score=30.81 Aligned_cols=145 Identities=14% Similarity=0.133 Sum_probs=80.5
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHH--------
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINS-------- 115 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~-------- 115 (340)
..+.++|.+.|+++.+.+ ...| -.||..+.+.|+.+++++.+++++.-+++ ....+++
T Consensus 437 ~g~~~~A~~vf~~m~~~d---~vs~-----~~mi~~~~~~g~~~eA~~lf~~m~~~~~p------d~~t~~~lL~a~~~~ 502 (857)
T PLN03077 437 CKCIDKALEVFHNIPEKD---VISW-----TSIIAGLRLNNRCFEALIFFRQMLLTLKP------NSVTLIAALSACARI 502 (857)
T ss_pred cCCHHHHHHHHHhCCCCC---eeeH-----HHHHHHHHHCCCHHHHHHHHHHHHhCCCC------CHhHHHHHHHHHhhh
Confidence 356778888888765432 2233 45788888899999999888888643221 1122233
Q ss_pred ---------------------------HHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHH
Q psy3481 116 ---------------------------ILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNK 168 (340)
Q Consensus 116 ---------------------------ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~ 168 (340)
+||.+....+.+...+.++.. .++-..| ..++..+-..++...
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~----n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSW----NILLTGYVAHGKGSM 572 (857)
T ss_pred chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhH----HHHHHHHHHcCCHHH
Confidence 333333332222221111111 1122222 456777778889999
Q ss_pred HHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhh
Q psy3481 169 LSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSL 223 (340)
Q Consensus 169 lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~ 223 (340)
+..+|.+....=-.|+.. ++ ..-+..++..++......+|....
T Consensus 573 A~~lf~~M~~~g~~Pd~~------T~-----~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 573 AVELFNRMVESGVNPDEV------TF-----ISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHHHHHHHcCCCCCcc------cH-----HHHHHHHhhcChHHHHHHHHHHHH
Confidence 999999988765556631 11 111234555566666556665543
No 115
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=60.34 E-value=27 Score=38.45 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=27.1
Q ss_pred cccccchhhH-HHHHHHHH----HHhcCCHHHHHHHHHHHHHHH-hhhh-hccc
Q psy3481 257 KVPLVPFVPG-LSIFFNIE----LMANLNVLTWLRFIIWMALEC-GGKM-HLRE 303 (340)
Q Consensus 257 rvPlvP~iP~-l~il~~l~----L~~~L~~~tw~~~~vW~~iG~-YG~r-hS~~ 303 (340)
+-|+.|++|+ +|++..+- +-.+++..+-..+..-+++|+ ||.+ |.+.
T Consensus 221 ~~~llpL~~~l~sv~~tlG~m~llG~plt~~s~~~~~llIgiGidy~vh~~nr~ 274 (727)
T COG1033 221 RRALLPLIIVLVSVLWTLGAMGLLGIPLTITTSAVPPLLIGIGIDYGVHFHNRY 274 (727)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3445665443 34544443 333556667777777778887 8876 4443
No 116
>KOG0128|consensus
Probab=60.14 E-value=1.9e+02 Score=32.51 Aligned_cols=123 Identities=17% Similarity=0.267 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccch
Q psy3481 67 EWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKND 146 (340)
Q Consensus 67 ~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (340)
-..+-..-|||.|+++.|+.+++...=.++- .+++.-..=-.+=+.|..+-.+. +....+++++..++.+...-
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~-----~~~pl~~~lWl~Wl~d~~~mt~s-~~~~~v~~~~ekal~dy~~v 183 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMS-----EIAPLPPHLWLEWLKDELSMTQS-EERKEVEELFEKALGDYNSV 183 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHH-----HhcCCChHHHHHHHHHHHhhccC-cchhHHHHHHHHHhcccccc
Confidence 3678888999999999999999655444432 23333333333444455442222 55677899999999988777
Q ss_pred hhhHh-HH--hHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHH
Q psy3481 147 RLWFK-TN--TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYA 200 (340)
Q Consensus 147 rlf~k-~n--~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~a 200 (340)
-+|.- ++ ..-+...+-.+.+...-.++.+.|+..-+-. + +|.-+.+++.
T Consensus 184 ~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~---t--~G~~~we~~~ 235 (881)
T KOG0128|consen 184 PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHI---T--EGAAIWEMYR 235 (881)
T ss_pred hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhh---c--ccHHHHHHHH
Confidence 78876 33 3334455666788888899999999876544 2 4777777665
No 117
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=60.02 E-value=1.5e+02 Score=27.59 Aligned_cols=154 Identities=19% Similarity=0.281 Sum_probs=61.1
Q ss_pred cccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhh
Q psy3481 42 LKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIS 121 (340)
Q Consensus 42 ~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~ 121 (340)
+...+|++|++.+++-.+.. + .-..+..++.++.+.++++++.+.++++.... .... ........-....
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~-----~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~--~~~~--~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERD-G-----DPRYLLSALQLYYRLGDYDEAEELLEKLEELP--AAPD--SARFWLALAEIYE 157 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----T---HHHHHHHHHHHH
T ss_pred cccccccccccccccccccc-c-----ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc--CCCC--CHHHHHHHHHHHH
Confidence 35566777777666554433 1 12334556677777788877777777765321 1111 1111111111111
Q ss_pred cCCChhHHHHHHHHHHHHHhhcc-chhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHH
Q psy3481 122 TSKNMELLQDFYETTLEALKDAK-NDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYA 200 (340)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~-~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~a 200 (340)
...+.+ +-.+...++++-.. +..+ -..|+.++.++++...+-..+...+.... . + ..+....+
T Consensus 158 ~~G~~~---~A~~~~~~al~~~P~~~~~----~~~l~~~li~~~~~~~~~~~l~~~~~~~~--~---~----~~~~~~la 221 (280)
T PF13429_consen 158 QLGDPD---KALRDYRKALELDPDDPDA----RNALAWLLIDMGDYDEAREALKRLLKAAP--D---D----PDLWDALA 221 (280)
T ss_dssp HCCHHH---HHHHHHHHHHHH-TT-HHH----HHHHHHHHCTTCHHHHHHHHHHHHHHH-H--T---S----CCHCHHHH
T ss_pred HcCCHH---HHHHHHHHHHHcCCCCHHH----HHHHHHHHHHCCChHHHHHHHHHHHHHCc--C---H----HHHHHHHH
Confidence 111122 22334444444332 2333 24578888999999999899988888862 2 1 11222232
Q ss_pred HHHHHHHhhhchHHHHHHHHhhhh
Q psy3481 201 LEIQMYTAQKNNKKLKKLYEQSLH 224 (340)
Q Consensus 201 leI~~~~~l~n~~~l~~~~~~~~~ 224 (340)
. .+..+++..+.-..|.....
T Consensus 222 ~---~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 222 A---AYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp H---HHHHHT-HHHHHHHHHHHHH
T ss_pred H---Hhcccccccccccccccccc
Confidence 2 56667777776666666543
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=60.00 E-value=19 Score=30.69 Aligned_cols=62 Identities=21% Similarity=0.332 Sum_probs=39.6
Q ss_pred hhhhhcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 32 LENQYYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 32 lEn~y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
-+|-|..+..+ ...+.++|++.|+..+..++ +...++..+..++.++|++++..+.|++.+.
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQP-----WSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34434334433 34556778888888777652 2345556677777778888888877777765
No 119
>KOG2927|consensus
Probab=59.54 E-value=35 Score=34.45 Aligned_cols=29 Identities=28% Similarity=0.474 Sum_probs=19.3
Q ss_pred ccchhHHHhhhc---cCCCCCcchHHHHHHHH
Q psy3481 308 KAHTDFFEAFKN---YDESGSPRRTTCLKYLV 336 (340)
Q Consensus 308 ~~~~~F~eaF~~---yde~g~~~~~~~LKYl~ 336 (340)
.+-.-|+|||+- |...++|.+..-++|+.
T Consensus 263 ~eDvGfleSF~PLy~~~~~~~~~~~aK~~k~s 294 (372)
T KOG2927|consen 263 TEDVGFLESFKPLYEYHYKKDPKKTAKLDKKS 294 (372)
T ss_pred hhhhhHHHhhcccccccCCCCcchhhHHHHHH
Confidence 444579999864 44446677777777765
No 120
>PRK11189 lipoprotein NlpI; Provisional
Probab=59.01 E-value=1.7e+02 Score=27.95 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=76.5
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCC
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKN 125 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~ 125 (340)
..+.+|..+.+++...+ -..+..-+..-++..++.+.|++++....|++.+..- +.-+.++ +.+=.......+
T Consensus 41 ~~e~~i~~~~~~l~~~~-~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~-----~~lg~~~~~~g~ 113 (296)
T PRK11189 41 QQEVILARLNQILASRD-LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAY-----NYLGIYLTQAGN 113 (296)
T ss_pred HHHHHHHHHHHHHcccc-CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHH-----HHHHHHHHHCCC
Confidence 34789999999997542 1123444567788889999999999999999988753 4333222 222223322233
Q ss_pred hhHHHHHHHHHHHHHhhc-cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 126 MELLQDFYETTLEALKDA-KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~-~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
.+.. ++....+++-. .+.. +-..++.+++..+++..+-..+.+....
T Consensus 114 ~~~A---~~~~~~Al~l~P~~~~----a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 114 FDAA---YEAFDSVLELDPTYNY----AYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHH---HHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3322 33333333322 2233 3366888999999999999999988875
No 121
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=58.88 E-value=5.9 Score=40.89 Aligned_cols=11 Identities=45% Similarity=0.582 Sum_probs=7.0
Q ss_pred HHHHHHHHHHH
Q psy3481 129 LQDFYETTLEA 139 (340)
Q Consensus 129 ~~~~~~~~~~~ 139 (340)
|+..|=-|+++
T Consensus 206 LE~AY~Scle~ 216 (458)
T PF10446_consen 206 LEAAYISCLEA 216 (458)
T ss_pred HHHHHHHHHHH
Confidence 46667666665
No 122
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=57.92 E-value=25 Score=28.16 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=38.6
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRY 93 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~ 93 (340)
+.++|++.++++++.- .+ .+-.|.++=-++..+...|+|.+|+.+=
T Consensus 21 ~~~~Al~~W~~aL~k~-~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 21 ETQQALQKWRKALEKI-TD-REDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred hHHHHHHHHHHHHhhc-CC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999876 33 3459999999999999999999988753
No 123
>PRK14574 hmsH outer membrane protein; Provisional
Probab=57.76 E-value=1.2e+02 Score=34.03 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=12.0
Q ss_pred ccCCHHHHHHHHHhhcccc
Q psy3481 43 KEDDPKAALQSFQKVLDLE 61 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~ 61 (340)
+..|.+.|++.|++++...
T Consensus 46 r~Gd~~~Al~~L~qaL~~~ 64 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAG 64 (822)
T ss_pred hCCCHHHHHHHHHHHHhhC
Confidence 4455567777777776655
No 124
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=57.20 E-value=29 Score=32.25 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=42.3
Q ss_pred HHHHHHHHhhccccc-ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 48 KAALQSFQKVLDLES-GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 48 ~~a~~~~~~v~~~~~-~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
..|++.|.+.+..+. +..+.-..+.+.-+..|+++.|++++++.++.+++.
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 469999999998774 234556677888888999999999999999999866
No 125
>KOG2003|consensus
Probab=56.44 E-value=89 Score=33.12 Aligned_cols=121 Identities=21% Similarity=0.273 Sum_probs=72.4
Q ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH---------Hhhhc----------------
Q psy3481 49 AALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL---------YIKSA---------------- 103 (340)
Q Consensus 49 ~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~---------~~~~~---------------- 103 (340)
.||..|.-+++.. =.|++-..++-.+|-.|+.++|.+.+..++. ||++.
T Consensus 294 dainsfdh~m~~~------pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~ 367 (840)
T KOG2003|consen 294 DAINSFDHCMEEA------PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH 367 (840)
T ss_pred hhHhhHHHHHHhC------ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH
Confidence 4455555444432 2477778888888999999999999888875 44321
Q ss_pred ------cchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHH
Q psy3481 104 ------VTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQL 176 (340)
Q Consensus 104 ------v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~l 176 (340)
-.|+-+||.|-+-...++..-..++. .=++.|+|.++.+.---|-...++..+.-++..+.+..+-.+|+-+
T Consensus 368 lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 368 LKNMEKENKADAEKAIITAAKIIAPVIAPDFA-AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhccccccchh-cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 13556777777766666644322221 2378888888765433343344455555555555555555444433
No 126
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=56.03 E-value=1.2e+02 Score=27.15 Aligned_cols=107 Identities=18% Similarity=0.235 Sum_probs=73.9
Q ss_pred hhhhhhccccccccC-CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh--------h
Q psy3481 31 DLENQYYNSKALKED-DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI--------K 101 (340)
Q Consensus 31 ~lEn~y~~ak~~~~~-~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~--------~ 101 (340)
+||.-|--|-.+.+. +.++|.+.|+-....+ -|-+.-...|.-++..+|++++.+..|......= +
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 477777777666544 5699999999988765 4777788889999999999999999998875421 1
Q ss_pred h-----cc-chhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q psy3481 102 S-----AV-TRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKD 142 (340)
Q Consensus 102 ~-----~v-~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~ 142 (340)
. .+ .+.++.++.+..|......+.-..+.+.-+..+++|.+
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHhhc
Confidence 1 11 24566667777777665444444555556666665543
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=55.95 E-value=57 Score=27.75 Aligned_cols=53 Identities=8% Similarity=-0.006 Sum_probs=42.3
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
...+.++|+..|++.+..+ +... .++-++...+.+.|++++....|.+.+..-
T Consensus 70 ~~g~~~~A~~~y~~Al~l~-p~~~----~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 70 MLKEYTTAINFYGHALMLD-ASHP----EPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3456789999999999987 3322 345677889999999999999999998754
No 128
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=55.50 E-value=1e+02 Score=35.17 Aligned_cols=128 Identities=9% Similarity=0.016 Sum_probs=77.2
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhh---------hccch-hhHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIK---------SAVTR-NYSEKSI 113 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~---------~~v~k-~~~~k~i 113 (340)
+.|.++|+..|+++++.+ ++..+. ...+++++.++|++++.....++.+..-. ..+.+ .++.+..
T Consensus 57 ~Gd~~~A~~~l~~Al~~d-P~n~~~----~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~kA~~~y 131 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV-PDNIPL----TLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTV 131 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHH----HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChhHHHHH
Confidence 478899999999999988 443333 38899999999999999988877655321 11211 1222333
Q ss_pred HHHHHHhhcCCCh-hHH--------------HHHHHHHHHHHhhccchhhh-Hh--HHhHHHHhhhcccchHHHHHHHHH
Q psy3481 114 NSILDYISTSKNM-ELL--------------QDFYETTLEALKDAKNDRLW-FK--TNTKLGKLYFDREDFNKLSRILKQ 175 (340)
Q Consensus 114 ~~ild~~~~~~~~-~~~--------------~~~~~~~~~~~~~~~~~rlf-~k--~n~kL~~l~~~m~~~~~lp~~l~~ 175 (340)
..++.. .|+. +.. -..++.++++|+ .+..... -. ..+-+++++..|+++..+-+.+.+
T Consensus 132 e~l~~~---~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 132 EELLAQ---QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHh---CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 333332 2321 111 112344445554 2111111 00 223346799999999999999999
Q ss_pred HHhhc
Q psy3481 176 LHQSC 180 (340)
Q Consensus 176 lH~~~ 180 (340)
+.+.-
T Consensus 208 L~k~~ 212 (987)
T PRK09782 208 ARQQN 212 (987)
T ss_pred HHhcC
Confidence 98873
No 129
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=54.54 E-value=2.3e+02 Score=28.23 Aligned_cols=124 Identities=13% Similarity=0.138 Sum_probs=71.1
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhH-H---HHHHHHHH
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYS-E---KSINSILD 118 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~-~---k~i~~ild 118 (340)
...+.++|++.+++.++.. +++. .+++.+..++.++|+++++.+.+.+++..- ..+.... . ..-...++
T Consensus 165 ~~~~~~~Al~~l~~l~~~~-P~~~----~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMA-PRHK----EVLKLAEEAYIRSGAWQALDDIIDNMAKAG--LFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHH
Confidence 3566788888888888876 3322 467788888899999998888888876541 1222211 1 11111122
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhcc-chhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 119 YISTSKNMELLQDFYETTLEALKDAK-NDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
......+.+ ...++.+... ..|-=...-..++..+...+++..+-+.+.+..++.
T Consensus 238 ~~~~~~~~~-------~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~ 293 (409)
T TIGR00540 238 EAMADEGID-------GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL 293 (409)
T ss_pred HHHHhcCHH-------HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Confidence 111111111 1122222111 101112233567889999999999999999988874
No 130
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=54.00 E-value=2.4e+02 Score=28.17 Aligned_cols=134 Identities=10% Similarity=0.080 Sum_probs=72.1
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHh
Q psy3481 75 QMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNT 154 (340)
Q Consensus 75 q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~ 154 (340)
.++.++.+.|++++..+.+.+.+.-. +.-.. .+-..++.+... ...+. ....+....+++...++.- +....
T Consensus 268 ~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~-~~~~~l~~~~~l--~~~~~---~~~~~~~e~~lk~~p~~~~-~~ll~ 339 (409)
T TIGR00540 268 ALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRA-ISLPLCLPIPRL--KPEDN---EKLEKLIEKQAKNVDDKPK-CCINR 339 (409)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHhhC-CCccc-chhHHHHHhhhc--CCCCh---HHHHHHHHHHHHhCCCChh-HHHHH
Confidence 34456667777777776666665532 11100 000122222211 11121 2234444444554444442 34456
Q ss_pred HHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhh
Q psy3481 155 KLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKS 227 (340)
Q Consensus 155 kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~ 227 (340)
-|+++++.+++++.+-+.|.+...--..|+. +++..-.+++..+++....+..|..+.....
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-----------~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDA-----------NDLAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999953222223441 1222224567778888888888887755443
No 131
>KOG1498|consensus
Probab=52.84 E-value=2.2e+02 Score=29.50 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=69.7
Q ss_pred ccccccCCHHHHHHHHHhhccccc-ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHH
Q psy3481 39 SKALKEDDPKAALQSFQKVLDLES-GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSIL 117 (340)
Q Consensus 39 ak~~~~~~~~~a~~~~~~v~~~~~-~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~il 117 (340)
++++...+-++|++.+-..-..-. +..-.=.-|.+..+++++|..++++.+.+.+.-|- .|-.--|....+.|....
T Consensus 20 ~~~la~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Ls--kkrgqlk~ai~~Mvq~~~ 97 (439)
T KOG1498|consen 20 ANNLAQIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLS--KKRGQLKQAIQSMVQQAM 97 (439)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHH
Confidence 445556666777776544322111 23345667889999999999999999998876552 234456777888999999
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHh
Q psy3481 118 DYISTSKNMELLQDFYETTLEALK 141 (340)
Q Consensus 118 d~~~~~~~~~~~~~~~~~~~~~~~ 141 (340)
.|+.++++.+..-.++++.....+
T Consensus 98 ~y~~~~~d~~~k~~li~tLr~Vte 121 (439)
T KOG1498|consen 98 TYIDGTPDLETKIKLIETLRTVTE 121 (439)
T ss_pred HhccCCCCchhHHHHHHHHHHhhc
Confidence 999888877766666766655443
No 132
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.83 E-value=1e+02 Score=29.93 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=46.3
Q ss_pred hhhhccccc-cccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy3481 33 ENQYYNSKA-LKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLL 97 (340)
Q Consensus 33 En~y~~ak~-~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~ 97 (340)
++-|-+|.. +++.+-..|.+.|++-|+.=+ ++...=.|..=|.+.++.+|+|++....|..+.
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP--~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~ 205 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYP--NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVV 205 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCcccchhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 344555555 466677999999999998652 344555566679999999999999887776553
No 133
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=52.48 E-value=2.4e+02 Score=30.95 Aligned_cols=125 Identities=7% Similarity=-0.016 Sum_probs=77.3
Q ss_pred ccCCHHHHHHHHHhhcccccccc---------hh-hHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHH
Q psy3481 43 KEDDPKAALQSFQKVLDLESGER---------GE-WGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKS 112 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~---------~~-w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~ 112 (340)
...+.++|++.++++....+... .+ -...+.-.++.++..+|++++.++.+++++... +. + ..+
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~---n--~~l 395 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PG---N--QGL 395 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---C--HHH
Confidence 44566788888888776542110 01 123556667788889999999999999987654 32 2 233
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhc-cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 113 INSILDYISTSKNMELLQDFYETTLEALKDA-KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 113 i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~-~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
...+........+.+. -.+...++++.. .+-.+ ..-++.++.+.+++..+.+.+.++..+.
T Consensus 396 ~~~lA~l~~~~g~~~~---A~~~l~~al~l~Pd~~~l----~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 396 RIDYASVLQARGWPRA---AENELKKAEVLEPRNINL----EVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhcCCHHH---HHHHHHHHHhhCCCChHH----HHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 3444444433333332 344444445433 23333 2456678889999999999999999874
No 134
>KOG1288|consensus
Probab=52.41 E-value=36 Score=37.57 Aligned_cols=107 Identities=8% Similarity=0.006 Sum_probs=66.5
Q ss_pred HHHhhhcccchHHHHHHHHHHHh--hcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhh--hhhhH
Q psy3481 156 LGKLYFDREDFNKLSRILKQLHQ--SCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIK--SAIPH 231 (340)
Q Consensus 156 L~~l~~~m~~~~~lp~~l~~lH~--~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~--~si~~ 231 (340)
-+|++=+.+|++..|.++.-.|- .=..|+.+... .=.+++++. +.+....++ +++.+
T Consensus 394 asrvL~alakD~lfg~ll~fak~~s~~~nP~~av~v--tw~lvqlvl-----------------l~g~~N~iA~~it~~F 454 (945)
T KOG1288|consen 394 ASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGV--TWLLVQLVL-----------------LWGDINKIASMITMTF 454 (945)
T ss_pred HHHHHHHHhhcccchhhheeeeccccCCCceeeeeH--HHHHHHHHH-----------------HHhhHHHHHHHHHHHH
Confidence 34588889999999987765554 33457654221 111122211 222222233 56777
Q ss_pred HHHHHHHHHHhhheecc-cCCCCCcccccccchhhHHHHHHHHHHHhcCCHH
Q psy3481 232 PLIMGVIRGLFVIEAHE-QNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVL 282 (340)
Q Consensus 232 ~~~~~vv~~~lIilR~~-~p~~~r~FrvPlvP~iP~l~il~~l~L~~~L~~~ 282 (340)
++.|+++|.+-..++-. -|+..+.||- +-+-++++|++.|+.+|+-.+..
T Consensus 455 Llty~~vNLacl~LeissAPNFRPtFky-F~w~TclvG~l~s~~mMfvVd~~ 505 (945)
T KOG1288|consen 455 LLTYGAVNLACLLLEISSAPNFRPTFKY-FNWHTCLVGVLLSLGMMFVVDRI 505 (945)
T ss_pred HHHHHHHHHHHHHhhhccCCCCCchhhh-hhHHHHHHHHHHHHhhhheecch
Confidence 88888888865555544 4666666663 34568999999999999887654
No 135
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=51.65 E-value=1.4e+02 Score=31.33 Aligned_cols=54 Identities=19% Similarity=0.107 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
..+.++|++.|++.++.+ ++..+ .=-++.++.-.|.++|+++++++.+++.+..
T Consensus 88 lGryeEAIa~f~rALeL~-Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 88 KGRVKDALAQFETALELN-PNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCHHHHHHHHHHHHhhC-CCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 367799999999999987 33221 1134688889999999999999999998774
No 136
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=51.38 E-value=26 Score=35.51 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=13.6
Q ss_pred eecccCCCCCcccccc
Q psy3481 245 EAHEQNMEGLRFKVPL 260 (340)
Q Consensus 245 lR~~~p~~~r~FrvPl 260 (340)
+|+..|+.+|+||+|.
T Consensus 351 l~~~~~~~~~~y~~~~ 366 (378)
T TIGR00796 351 LRKLWDSKRAVYQITL 366 (378)
T ss_pred HHHhcCCCCCeeehHH
Confidence 6888888899999984
No 137
>KOG1941|consensus
Probab=50.70 E-value=2e+02 Score=29.85 Aligned_cols=172 Identities=17% Similarity=0.175 Sum_probs=101.9
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS 123 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~ 123 (340)
..+.+.||+...+++..- ....-+|.-+--+...+.++|.|++|+.+=-....-. . .-+.+.....-+..-.
T Consensus 19 s~~~~~al~~w~~~L~~l--~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a---~---~~~ds~~~~ea~lnla 90 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKL--SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTA---R---ELEDSDFLLEAYLNLA 90 (518)
T ss_pred CchHHHHHHHHHHHHHHH--HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHH
Confidence 345688999999998754 2356788888888999999999999876543222211 1 1223333333333222
Q ss_pred CChhHHHHHHHHHHHHHhhc------cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhH
Q psy3481 124 KNMELLQDFYETTLEALKDA------KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLE 197 (340)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~------~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llle 197 (340)
+..+.+.+| ..|+..-+|. ...++=+-+..-+++...+|+.++....-|.+-..--..- +| ..+-+.
T Consensus 91 r~~e~l~~f-~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~---~D---~~LElq 163 (518)
T KOG1941|consen 91 RSNEKLCEF-HKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN---DD---AMLELQ 163 (518)
T ss_pred HHHHHHHHh-hhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc---CC---ceeeee
Confidence 223333222 2223333332 2245666677778889999999988877766554432211 13 234444
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhh
Q psy3481 198 IYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIP 230 (340)
Q Consensus 198 V~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~ 230 (340)
|+..--.+|+.++++.|...+...+..++.++.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence 665445688888888887666666666665443
No 138
>KOG0943|consensus
Probab=50.44 E-value=8 Score=44.74 Aligned_cols=6 Identities=33% Similarity=0.656 Sum_probs=2.8
Q ss_pred HHHHHH
Q psy3481 329 TTCLKY 334 (340)
Q Consensus 329 ~~~LKY 334 (340)
-..|-|
T Consensus 2112 ~DaLhY 2117 (3015)
T KOG0943|consen 2112 GDALHY 2117 (3015)
T ss_pred hhHHHH
Confidence 444444
No 139
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=49.87 E-value=8.6 Score=39.74 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=6.8
Q ss_pred HHHHhhcCCCC
Q psy3481 174 KQLHQSCQTDD 184 (340)
Q Consensus 174 ~~lH~~~ktp~ 184 (340)
+.|-|.|-|-+
T Consensus 227 QDIDPSFPtSD 237 (458)
T PF10446_consen 227 QDIDPSFPTSD 237 (458)
T ss_pred CCCCCCCCCCC
Confidence 56666766644
No 140
>PF10769 DUF2594: Protein of unknown function (DUF2594); InterPro: IPR019705 This entry represents proteins with unknown function and appear to be restricted to Enterobacteriaceae.
Probab=49.49 E-value=62 Score=25.47 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q psy3481 90 MSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA 143 (340)
Q Consensus 90 ~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (340)
..++|.+++++..+++.+-+.|.|-+|=.++....+... .+.|..|++.|+-+
T Consensus 19 V~CLK~~lT~mLKamGQADAGkviinmEk~ia~~eD~~Q-AevF~nTi~QIK~a 71 (74)
T PF10769_consen 19 VACLKALLTLMLKAMGQADAGKVIINMEKYIAQMEDPKQ-AEVFKNTIKQIKTA 71 (74)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhccCHHH-HHHHHHHHHHHHHH
Confidence 467889999999999999999999999999988766443 45677777777644
No 141
>KOG1289|consensus
Probab=49.42 E-value=31 Score=36.80 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=27.3
Q ss_pred hHHHHhhhcccchHHHH--HHHHHHHhhcCCCCC
Q psy3481 154 TKLGKLYFDREDFNKLS--RILKQLHQSCQTDDG 185 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp--~~l~~lH~~~ktp~~ 185 (340)
+.-.|+.|+-+|||.+| +++.++.|++++|-.
T Consensus 360 ~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~n 393 (550)
T KOG1289|consen 360 TASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLN 393 (550)
T ss_pred HHHHHHHhhhhccCCCCCcceeeecCCCCCCcHH
Confidence 44567899999999999 889999999998874
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=48.27 E-value=28 Score=26.43 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=34.8
Q ss_pred ccccc-cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q psy3481 39 SKALK-EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQ 95 (340)
Q Consensus 39 ak~~~-~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~ 95 (340)
|..+- ..+-++|++.+++ .... + -.......+++.++++|++++.++.|.+
T Consensus 32 a~~~~~~~~y~~A~~~~~~-~~~~-~----~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQK-LKLD-P----SNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHTTHHHHHHHHHHC-HTHH-H----CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH-hCCC-C----CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 55543 3455899999998 3332 1 1244555668999999999999988864
No 143
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=47.90 E-value=6.1 Score=31.73 Aligned_cols=7 Identities=29% Similarity=0.696 Sum_probs=0.0
Q ss_pred cccCCCC
Q psy3481 18 LEYSEDS 24 (340)
Q Consensus 18 ~~~~~~~ 24 (340)
.||+||+
T Consensus 37 dd~~DDD 43 (81)
T PF14812_consen 37 DDYEDDD 43 (81)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3343333
No 144
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=46.96 E-value=3.4e+02 Score=29.29 Aligned_cols=27 Identities=7% Similarity=0.113 Sum_probs=20.7
Q ss_pred HhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 153 NTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 153 n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
...++.++...++...+-..+.+....
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344577888899999998888886655
No 145
>COG2149 Predicted membrane protein [Function unknown]
Probab=46.68 E-value=43 Score=28.76 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=20.2
Q ss_pred chhhhHh-HHhHHHHhhhcccchHHHHHH
Q psy3481 145 NDRLWFK-TNTKLGKLYFDREDFNKLSRI 172 (340)
Q Consensus 145 ~~rlf~k-~n~kL~~l~~~m~~~~~lp~~ 172 (340)
|+|+|+- +-|.|+-+.++.+=++-.|.+
T Consensus 22 nERTFLAWiRTsLallafGvai~~f~~~l 50 (120)
T COG2149 22 NERTFLAWIRTSLALLAFGVAIDQFVPFL 50 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899887 667788788877666655543
No 146
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=46.41 E-value=49 Score=32.81 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=43.8
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
+..+.++|+..+++.+... +.. .+++.++..+++++|+++++...|++.+..-
T Consensus 48 ~~g~~~eAl~~~~~Al~l~-P~~----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 48 KLGNFTEAVADANKAIELD-PSL----AKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-cCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 4567899999999999987 332 3467788999999999999999999988754
No 147
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=45.52 E-value=68 Score=23.90 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhh----hccchhhHHHHHHHHHHHhhcCCChhHHHH
Q psy3481 87 KEMMSRYKQLLLYIK----SAVTRNYSEKSINSILDYISTSKNMELLQD 131 (340)
Q Consensus 87 ~~~~~~~~~l~~~~~----~~v~k~~~~k~i~~ild~~~~~~~~~~~~~ 131 (340)
..+..+|.++|.-++ +++-|-++|.+++.=++.+....+.+.+++
T Consensus 5 ~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~ 53 (57)
T PF04716_consen 5 EALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEK 53 (57)
T ss_pred HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 456777888877775 478899999999999999987666655543
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=45.31 E-value=77 Score=27.21 Aligned_cols=52 Identities=19% Similarity=0.077 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 45 DDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
.+.++|+..|++.+... ......--++..+..++.+.|++++....|++.+.
T Consensus 49 g~~~~A~~~~~~al~l~--~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 49 GEYAEALQNYYEAMRLE--IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred CCHHHHHHHHHHHHhcc--ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 149
>PRK10613 hypothetical protein; Provisional
Probab=45.25 E-value=69 Score=25.24 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q psy3481 90 MSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA 143 (340)
Q Consensus 90 ~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (340)
..++|-+++++..+++.+-+.|.|-+|=.++....+... .+.|..|.+.|+.+
T Consensus 19 V~CLK~llTlmLkamGQADAGkVii~mEr~ia~meD~~Q-A~vf~nTv~QIK~a 71 (74)
T PRK10613 19 VSCLKAMLTLMLKAMGQADAGRVILKMEKQIAQIEDETQ-AAVFSNTVKQIKQA 71 (74)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHccCHHH-HHHHHHHHHHHHHH
Confidence 467889999998999999999999999999988766443 46778888877754
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=44.91 E-value=3.6e+02 Score=27.59 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=67.9
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCC
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKN 125 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~ 125 (340)
.-+.|++.|++....+ + ++. --+++++...++-.++++.+.+.+.-. +.+ ...+.--.+++.....
T Consensus 184 ~~~~ai~lle~L~~~~-p---ev~----~~LA~v~l~~~~E~~AI~ll~~aL~~~----p~d--~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 184 RYDEAIELLEKLRERD-P---EVA----VLLARVYLLMNEEVEAIRLLNEALKEN----PQD--SELLNLQAEFLLSKKK 249 (395)
T ss_pred cHHHHHHHHHHHHhcC-C---cHH----HHHHHHHHhcCcHHHHHHHHHHHHHhC----CCC--HHHHHHHHHHHHhcCC
Confidence 3478999999987766 3 232 347888888888888888887776422 111 2233323333322222
Q ss_pred hhHHHHHHHHHHHHHhhccc-hhhhHhHHhHHHHhhhcccchHHHHHHHHHH
Q psy3481 126 MELLQDFYETTLEALKDAKN-DRLWFKTNTKLGKLYFDREDFNKLSRILKQL 176 (340)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~-~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~l 176 (340)
.+ .-.+.++++++-+.+ -+.|. .|+.+|..++++..+...++..
T Consensus 250 ~~---lAL~iAk~av~lsP~~f~~W~----~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YE---LALEIAKKAVELSPSEFETWY----QLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HH---HHHHHHHHHHHhCchhHHHHH----HHHHHHHhcCCHHHHHHHHhcC
Confidence 22 234555555554444 46775 4899999999999997777643
No 151
>KOG2076|consensus
Probab=44.90 E-value=65 Score=36.19 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhccchhhhH
Q psy3481 130 QDFYETTLEALKDAKNDRLWF 150 (340)
Q Consensus 130 ~~~~~~~~~~~~~~~~~rlf~ 150 (340)
++|++++.+-+..-..+|.+|
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f 563 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIF 563 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 557777777666555455554
No 152
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=44.08 E-value=3.8e+02 Score=30.80 Aligned_cols=117 Identities=14% Similarity=0.077 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCC
Q psy3481 45 DDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSK 124 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~ 124 (340)
.++++|++.|++.+... +. -.+...+..++.++|+++++...|++.+..- +.-. ...+++=-.+....
T Consensus 590 Gr~~eAl~~~~~AL~l~-P~-----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~-----~a~~nLG~aL~~~G 657 (987)
T PRK09782 590 GQPELALNDLTRSLNIA-PS-----ANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNS-----NYQAALGYALWDSG 657 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHCC
Confidence 55566666666666554 21 1344556666777777777777776665532 2211 11111111111122
Q ss_pred ChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 125 NMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
+. ++-.+....+++-..+. ..+-..|+.++..++++..+-..+.++..-
T Consensus 658 ~~---eeAi~~l~~AL~l~P~~---~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 658 DI---AQSREMLERAHKGLPDD---PALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred CH---HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 22 22334444444433222 123357888999999999999888888755
No 153
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=43.95 E-value=48 Score=22.32 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 72 ALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 72 a~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
+..++...+..+|++++..+.|++.+.-
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4678889999999999999999998764
No 154
>PRK12370 invasion protein regulator; Provisional
Probab=43.68 E-value=4.1e+02 Score=27.84 Aligned_cols=150 Identities=15% Similarity=0.072 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCC
Q psy3481 45 DDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSK 124 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~ 124 (340)
.+.++|++.+++.++.+ ++.. .++-.+..++..+|++++....|++.+..- +.-...+.. +-.......
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~-----lg~~l~~~G 386 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNP----QALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYY-----YGWNLFMAG 386 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHH-----HHHHHHHCC
Confidence 34689999999999987 3322 244556778889999999999999998743 432222211 111111112
Q ss_pred ChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHH
Q psy3481 125 NMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQ 204 (340)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~ 204 (340)
+.+ +-.+....+++-.....- ....++.+++.++++..+-..+.++.... .|+ .+ .....--.
T Consensus 387 ~~~---eAi~~~~~Al~l~P~~~~---~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~---~~-------~~~~~la~ 449 (553)
T PRK12370 387 QLE---EALQTINECLKLDPTRAA---AGITKLWITYYHTGIDDAIRLGDELRSQH-LQD---NP-------ILLSMQVM 449 (553)
T ss_pred CHH---HHHHHHHHHHhcCCCChh---hHHHHHHHHHhccCHHHHHHHHHHHHHhc-ccc---CH-------HHHHHHHH
Confidence 222 223444444443322211 11224556777899988888888776543 133 11 01111122
Q ss_pred HHHhhhchHHHHHHHHhh
Q psy3481 205 MYTAQKNNKKLKKLYEQS 222 (340)
Q Consensus 205 ~~~~l~n~~~l~~~~~~~ 222 (340)
.+..+++.......+...
T Consensus 450 ~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 450 FLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHhCCCHHHHHHHHHHh
Confidence 445567777766665443
No 155
>KOG2076|consensus
Probab=43.56 E-value=3.4e+02 Score=30.80 Aligned_cols=73 Identities=18% Similarity=0.275 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC
Q psy3481 45 DDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS 123 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~ 123 (340)
++-++|+-.|.++|... +. +|.+ +..=+.||-+.|+....|+.|.++++++ +.+.=-..+.+|+..+.++-++
T Consensus 221 ~~i~qA~~cy~rAI~~~-p~--n~~~--~~ers~L~~~~G~~~~Am~~f~~l~~~~-p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQAN-PS--NWEL--IYERSSLYQKTGDLKRAMETFLQLLQLD-PPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred ccHHHHHHHHHHHHhcC-Cc--chHH--HHHHHHHHHHhChHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHh
Confidence 34567888888888877 32 2543 3444578889999999999999999998 6666566777778877777655
No 156
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=43.38 E-value=2.7e+02 Score=29.56 Aligned_cols=133 Identities=15% Similarity=0.147 Sum_probs=71.8
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS 123 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~ 123 (340)
..+.++|++.+++.-. ..--....++...+++.++|+++++...|+.|+.-- | =...|-......+.-....+
T Consensus 17 ~g~~~~AL~~L~~~~~-----~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-P-dn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEK-----QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-P-DNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred CCCHHHHHHHHHhhhh-----hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-C-CcHHHHHHHHHHHhhhcccc
Confidence 3567999999876422 223344557788999999999999999999997743 2 22334333333331111111
Q ss_pred -CChhHHHHHHHHHHHHHhhcc-chhhhHhH-H----hHHHHhhhcccchHHHHHHHHHHHhhcCCC
Q psy3481 124 -KNMELLQDFYETTLEALKDAK-NDRLWFKT-N----TKLGKLYFDREDFNKLSRILKQLHQSCQTD 183 (340)
Q Consensus 124 -~~~~~~~~~~~~~~~~~~~~~-~~rlf~k~-n----~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp 183 (340)
.+.+.+.++|+...+..-.+. -+|+=+.. + -.++.-|....=..-+|.+|..|.+-++.|
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDP 156 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcCh
Confidence 123445556664444332221 13433321 0 223333333333444677777777776644
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=42.09 E-value=42 Score=19.99 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=21.1
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 74 KQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 74 ~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
..++..+.+.|+.+++.+.++++..
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhH
Confidence 4578899999999999999988754
No 158
>PF14007 YtpI: YtpI-like protein
Probab=40.94 E-value=2e+02 Score=23.46 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=19.3
Q ss_pred cCCHHHHHHHHHHHHHHH----hhhhhcc
Q psy3481 278 NLNVLTWLRFIIWMALEC----GGKMHLR 302 (340)
Q Consensus 278 ~L~~~tw~~~~vW~~iG~----YG~rhS~ 302 (340)
..++.+++..++.+++|+ +|+|+.+
T Consensus 54 ~~st~~~iV~~ifl~lG~~n~~~G~r~y~ 82 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLFNLFAGIRAYR 82 (89)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 667788888888999996 6887543
No 159
>KOG2002|consensus
Probab=40.83 E-value=68 Score=36.43 Aligned_cols=132 Identities=15% Similarity=0.203 Sum_probs=75.4
Q ss_pred chhhhhhccccccccCCH-------HHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhh
Q psy3481 30 VDLENQYYNSKALKEDDP-------KAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKS 102 (340)
Q Consensus 30 ~~lEn~y~~ak~~~~~~~-------~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~ 102 (340)
|.|-|-|..+-.-...|| +.|++.|++|+..++. .=|. =--+.-+++..|++.+.++.+.|++.-+..
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk--N~yA---ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~ 678 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK--NMYA---ANGIGIVLAEKGRFSEARDIFSQVREATSD 678 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc--hhhh---ccchhhhhhhccCchHHHHHHHHHHHHHhh
Confidence 678994444444455566 6899999999998741 1231 122456788889999999999999886620
Q ss_pred ccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHH
Q psy3481 103 AVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQL 176 (340)
Q Consensus 103 ~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~l 176 (340)
. . ...=+|=.-+....+.-..-+.|+.|+.-.- -+|++ .+-..|||++|+.++++.+-..+-..
T Consensus 679 ~-~-----dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~-~~~~~---~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 679 F-E-----DVWLNLAHCYVEQGQYRLAIQMYENCLKKFY-KKNRS---EVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred C-C-----ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCH---HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 0 0 0000010101011111111235555554322 11221 13367999999999999887665443
No 160
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=40.67 E-value=9.2 Score=42.36 Aligned_cols=10 Identities=30% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHh
Q psy3481 132 FYETTLEALK 141 (340)
Q Consensus 132 ~~~~~~~~~~ 141 (340)
.-+.|.+|.+
T Consensus 761 ~A~Ace~Ar~ 770 (787)
T PF03115_consen 761 WAHACEEARK 770 (787)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3445555433
No 161
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=38.90 E-value=1.7e+02 Score=24.41 Aligned_cols=108 Identities=23% Similarity=0.309 Sum_probs=54.9
Q ss_pred hhhhhhccccccccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchh---
Q psy3481 31 DLENQYYNSKALKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRN--- 107 (340)
Q Consensus 31 ~lEn~y~~ak~~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~--- 107 (340)
+-+.-+.=.+++.+.|..+|++.++++++... + .+++ .+++.++++.++-+- ..-..+
T Consensus 14 ~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~-d--------~~~~---------l~~L~~~~R~ll~~k-~~~~~~~~~ 74 (143)
T PF12169_consen 14 DEEQIFELLDAILEGDAAEALELLNELLEQGK-D--------PKQF---------LDDLIEYLRDLLLYK-ITGDKSNLL 74 (143)
T ss_dssp STHHHHHHHHHHHTT-HHHHHHHHHHHHHCT-----------HHHH---------HHHHHHHHHHHHHHT-TSGGGS-SG
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C--------HHHH---------HHHHHHHHHHHHHHH-hCCchhhcc
Confidence 33444445566777777777777777766531 0 1111 134566666665532 111100
Q ss_pred -hHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHh---hccchhhhHhHH-hHHHH
Q psy3481 108 -YSEKSINSILDYISTSKNMELLQDFYETTLEALK---DAKNDRLWFKTN-TKLGK 158 (340)
Q Consensus 108 -~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~---~~~~~rlf~k~n-~kL~~ 158 (340)
..+...+.+. ..+..-+.+.+.+.++...++.+ ++.|.|+++-+. +|++.
T Consensus 75 ~~~~~~~~~~~-~~a~~~~~~~l~~~~~~l~~~~~~lr~s~~pr~~lE~~llrl~~ 129 (143)
T PF12169_consen 75 ELSEEEEEKLK-ELAKKFSPERLQRILQILLEAENELRYSSNPRILLEMALLRLCQ 129 (143)
T ss_dssp --CTTTHHHHH-HHHHHS-HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 1122222222 22222346677888888888765 556788887643 44443
No 162
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=38.56 E-value=53 Score=19.73 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=21.8
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 73 LKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 73 ~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
.-.++.-+.+.|+++++.+.+.++..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34578889999999999999998854
No 163
>KOG4346|consensus
Probab=38.44 E-value=1.9e+02 Score=32.06 Aligned_cols=112 Identities=16% Similarity=0.149 Sum_probs=52.8
Q ss_pred CCcccccccccc--cccccccCCCCCCCccchhhhhhccccccccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Q psy3481 2 SDCEDTFMCDEE--EDYGLEYSEDSNSEPDVDLENQYYNSKALKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKI 79 (340)
Q Consensus 2 sd~~d~~~~d~~--e~y~~~~~~~~~~~~~~~lEn~y~~ak~~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~ 79 (340)
|++|++-.+||| +.||+..+|-+.-.+++..| .-|.+.|.=....|+-..+.|+=|.-|-.+..+.++|+
T Consensus 467 SknD~~LdsDDd~f~pYDms~~D~e~k~d~~~~~-------~~k~~~PaYV~Dl~emL~~~E~yE~~eaAL~nae~LI~- 538 (849)
T KOG4346|consen 467 SKNDLRLDSDDDDFPPYDMSESDKEFKNDEIGEE-------KNKVTPPAYVADLFEMLLEKEKYEVFEAALFNAENLIN- 538 (849)
T ss_pred cCCccccccccccCCCCCCCCccccccccccccc-------cccCCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-
Confidence 554555555543 56666654444333333333 13455666556666665555422444556666667766
Q ss_pred HhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhh
Q psy3481 80 NFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIS 121 (340)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~ 121 (340)
-+-.+--+=..++.+.++..=...=+-+..+--++.|+...-
T Consensus 539 r~pt~~rq~A~eLlq~lLhLqn~f~~~~F~etq~~aiVa~~v 580 (849)
T KOG4346|consen 539 RRPTGFRQIAEELLQRLLHLQNNFGTPKFKETQVDAIVAACV 580 (849)
T ss_pred hcccccHHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHHHh
Confidence 222233344445555554432111122333333555555443
No 164
>KOG0545|consensus
Probab=38.41 E-value=2e+02 Score=28.35 Aligned_cols=88 Identities=20% Similarity=0.275 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhh--------HHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhh
Q psy3481 72 ALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNY--------SEKSINSILDYISTSK-NMELLQDFYETTLEALKD 142 (340)
Q Consensus 72 a~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~--------~~k~i~~ild~~~~~~-~~~~~~~~~~~~~~~~~~ 142 (340)
+|.|=..=+|++|+|+|+.+.|++-+.-++....|.+ .+|.|+.++=.++... +.+..-+..|.|-+.|.-
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3455566789999999999999999888876666643 5677777776665442 223333455667777753
Q ss_pred -ccc-hhhhHhHHhHHHHh
Q psy3481 143 -AKN-DRLWFKTNTKLGKL 159 (340)
Q Consensus 143 -~~~-~rlf~k~n~kL~~l 159 (340)
..| +++|-|....-+.=
T Consensus 260 ~~~nvKA~frRakAhaa~W 278 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVW 278 (329)
T ss_pred CCchHHHHHHHHHHHHhhc
Confidence 355 88888776555443
No 165
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=38.29 E-value=66 Score=17.60 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 72 ALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 72 a~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
+...+..++...+++++....+++.+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 456778889999999999998887764
No 166
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=37.10 E-value=54 Score=23.08 Aligned_cols=39 Identities=3% Similarity=0.082 Sum_probs=23.1
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHH
Q psy3481 75 QMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSIN 114 (340)
Q Consensus 75 q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~ 114 (340)
.+.+.|.+.|+++...+.+.+++.-- +.--|..+.+.++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~-~~~q~~eA~~LL~ 42 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG-DEAQRQEARALLA 42 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC-CHHHHHHHHHHHh
Confidence 35667777777777777777776422 2334445544444
No 167
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=35.92 E-value=5.9e+02 Score=27.45 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=32.4
Q ss_pred cccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 42 LKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 42 ~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
+...+.++|++.+++++...+... + ...-.+...+.++|++++....|++.+.
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~-~---~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALER-Q---ESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcc-h---hHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345677888888888776642111 1 1112334566677777777777777665
No 168
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=35.80 E-value=61 Score=23.17 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 72 ALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 72 a~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
.+..+..+++++|++++.+..|++.+.+-
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~ 33 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD 33 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 46778899999999999999999998864
No 169
>KOG4626|consensus
Probab=35.58 E-value=2.8e+02 Score=30.77 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=29.7
Q ss_pred cccccC-CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 40 KALKED-DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 40 k~~~~~-~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
.++|+- +..+|.+.|.+-+...+ .+ =.|+..|..|+..+|+.++...+|+.-+.+.
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~p-~h----adam~NLgni~~E~~~~e~A~~ly~~al~v~ 384 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLCP-NH----ADAMNNLGNIYREQGKIEEATRLYLKALEVF 384 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhCC-cc----HHHHHHHHHHHHHhccchHHHHHHHHHHhhC
Confidence 345544 45788888888887663 11 1244444444444444444444444444433
No 170
>KOG1126|consensus
Probab=34.84 E-value=3.9e+02 Score=29.21 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc-cchhhh
Q psy3481 71 KALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA-KNDRLW 149 (340)
Q Consensus 71 ka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~-~~~rlf 149 (340)
.|..-+.-+|.|+++++.+.-.++.-+. |.+ +|- -|+=++..+ .......+..++.++.| .-+..=
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~-INP---~ns------vi~~~~g~~---~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVE-INP---SNS------VILCHIGRI---QHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhc-CCc---cch------hHHhhhhHH---HHHhhhhhHHHHHHHHHHhcCCCC
Confidence 3444455677777777776655555544 211 111 133333222 11122334444444332 111111
Q ss_pred HhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHH
Q psy3481 150 FKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE 220 (340)
Q Consensus 150 ~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~ 220 (340)
--.--..++++|.++|+..+...|.+|..-. |+-+ -|+++--++|-.++|......=|+
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~v--P~es----------~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELV--PQES----------SVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhC--cchH----------HHHHHHHHHHHHHccchHHHHhhH
Confidence 1122456789999999999999998887763 4411 145554566766666555333333
No 171
>KOG1586|consensus
Probab=34.81 E-value=2.8e+02 Score=27.07 Aligned_cols=89 Identities=18% Similarity=0.365 Sum_probs=60.7
Q ss_pred hhhhhhccc-cccccCCHHHHHHHHHhhcccccccchhhHHHH--HHHHHHHHhhh-cCHHHHHHHHHHHHHHhhhccch
Q psy3481 31 DLENQYYNS-KALKEDDPKAALQSFQKVLDLESGERGEWGFKA--LKQMIKINFKL-SNYKEMMSRYKQLLLYIKSAVTR 106 (340)
Q Consensus 31 ~lEn~y~~a-k~~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka--~~q~~k~~~~~-~~~~~~~~~~~~l~~~~~~~v~k 106 (340)
|.-|+|-.| |..|..||.+|++.+++-|+.= .+.|+..--| ...+..||=.. .++++.+.+|.+--.|.++--+.
T Consensus 72 Daat~YveA~~cykk~~~~eAv~cL~~aieIy-t~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ 150 (288)
T KOG1586|consen 72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIY-TDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV 150 (288)
T ss_pred hHHHHHHHHHHHhhccChHHHHHHHHHHHHHH-HhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence 467777765 5677888999998888877654 4556655533 33455666554 78888888999888888765555
Q ss_pred hhHHHHHHHHHHHh
Q psy3481 107 NYSEKSINSILDYI 120 (340)
Q Consensus 107 ~~~~k~i~~ild~~ 120 (340)
+-+-|..-+.-+|-
T Consensus 151 ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 151 SSANKCLLKVAQYA 164 (288)
T ss_pred hhHHHHHHHHHHHH
Confidence 55666665565654
No 172
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=34.68 E-value=94 Score=18.85 Aligned_cols=26 Identities=4% Similarity=0.147 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 73 LKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 73 ~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
...+++.+++.|+.+.+.+.+.++..
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678899999999999988888764
No 173
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.19 E-value=2.5e+02 Score=26.30 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhh---ccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCC
Q psy3481 130 QDFYETTLEALKD---AKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 185 (340)
Q Consensus 130 ~~~~~~~~~~~~~---~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~ 185 (340)
+..+++...+++. .+..|.-..+...+|+-+|..+++..+.+.|..+...+++..+
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW 213 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGW 213 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc
Confidence 3445555555543 3457888889999999999999999999999999999987765
No 174
>PF14150 YesK: YesK-like protein
Probab=32.91 E-value=64 Score=25.92 Aligned_cols=14 Identities=7% Similarity=-0.040 Sum_probs=8.0
Q ss_pred hheecccCCCCCcc
Q psy3481 243 VIEAHEQNMEGLRF 256 (340)
Q Consensus 243 IilR~~~p~~~r~F 256 (340)
.++|++-|+.+..+
T Consensus 17 ~~lr~r~p~k~~~~ 30 (81)
T PF14150_consen 17 VLLRKRFPKKQPEI 30 (81)
T ss_pred HHHHHhCCCcchhH
Confidence 45677766655333
No 175
>PF13041 PPR_2: PPR repeat family
Probab=32.83 E-value=64 Score=22.11 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=22.1
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 74 KQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 74 ~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
--++.-+++.|+++++.+.|+++..
T Consensus 7 n~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 7 NTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578899999999999999999975
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=32.82 E-value=2.4e+02 Score=26.91 Aligned_cols=90 Identities=16% Similarity=0.265 Sum_probs=50.9
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhh-HHHHHHHHHHHhhc
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNY-SEKSINSILDYIST 122 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~-~~k~i~~ild~~~~ 122 (340)
..|++.|.+.|+..+..- +..++--..=+ +.+.+.|+.+.+..++++.+. .+++.. +.++-+..+++=+.
T Consensus 49 ~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~----~~l~~~~d~~~aR~lfer~i~----~l~~~~~~~~iw~~~i~fE~~ 119 (280)
T PF05843_consen 49 NKDPKRARKIFERGLKKF-PSDPDFWLEYL----DFLIKLNDINNARALFERAIS----SLPKEKQSKKIWKKFIEFESK 119 (280)
T ss_dssp CS-HHHHHHHHHHHHHHH-TT-HHHHHHHH----HHHHHTT-HHHHHHHHHHHCC----TSSCHHHCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHH----HHHHHhCcHHHHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHH
Confidence 345666777777777654 32232222223 333455677777777776643 345555 77777777777666
Q ss_pred CCChhHHHHHHHHHHHHHhh
Q psy3481 123 SKNMELLQDFYETTLEALKD 142 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~ 142 (340)
..+.+.+.++++-+.+....
T Consensus 120 ~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 120 YGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HS-HHHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHHhhh
Confidence 55666666666666665543
No 177
>PF06709 DUF1196: Protein of unknown function (DUF1196); InterPro: IPR009585 This family consists of several hypothetical bacterial proteins of around 51 residues in length which seem to be specific to Vibrio cholerae. The function of this family is unknown.
Probab=32.40 E-value=61 Score=23.39 Aligned_cols=33 Identities=18% Similarity=0.076 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhccc
Q psy3481 264 VPGLSIFFNIELMANLNVLTWLRFIIWMALECGGKMHLRE 303 (340)
Q Consensus 264 iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG~YG~rhS~~ 303 (340)
+|.=+.+.|++++..++...... |+|..+||-.
T Consensus 3 VPLEAFV~~V~~~~t~~FK~v~K-------GI~~K~hSIK 35 (51)
T PF06709_consen 3 VPLEAFVMCVFLCPTLPFKGVAK-------GIYAKQHSIK 35 (51)
T ss_pred ccHHHHHHHHHHHccchHHHHHH-------HHHHhhhhHH
Confidence 46667778888888887766554 7787777754
No 178
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=32.28 E-value=54 Score=30.67 Aligned_cols=57 Identities=26% Similarity=0.394 Sum_probs=42.2
Q ss_pred hhhhhccccccccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHH
Q psy3481 32 LENQYYNSKALKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEM 89 (340)
Q Consensus 32 lEn~y~~ak~~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~ 89 (340)
.|=||.=|-=.-..||+.|++.+.++++...+ ..+-.=.-++.|+-++.++|+++..
T Consensus 141 ~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~-~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYTKRDPEKTIQLLLRALELSNP-DDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcchhhh
Confidence 55566666666678999999999999987632 1133334478889999999999873
No 179
>KOG1464|consensus
Probab=31.59 E-value=1.1e+02 Score=30.46 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=55.5
Q ss_pred HHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc------CCChhHHHHHHHHHHHHHhhccchhhhHh
Q psy3481 78 KINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST------SKNMELLQDFYETTLEALKDAKNDRLWFK 151 (340)
Q Consensus 78 k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~------~~~~~~~~~~~~~~~~~~~~~~~~rlf~k 151 (340)
++|-.+++-+++..+|.|.+. +||+++-.- |-.+|.-+.. ..-.+...+|+|..++.-+..+..|+-+-
T Consensus 199 QmYT~qKnNKkLK~lYeqalh-iKSAIPHPl----ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCL 273 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALH-IKSAIPHPL----IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCL 273 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHH-hhccCCchH----HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHH
Confidence 455677888889999999876 778887643 3333333321 11123457788888887777777899888
Q ss_pred HHhHHHHhhhc
Q psy3481 152 TNTKLGKLYFD 162 (340)
Q Consensus 152 ~n~kL~~l~~~ 162 (340)
-.++||+++..
T Consensus 274 KYLVLANMLmk 284 (440)
T KOG1464|consen 274 KYLVLANMLMK 284 (440)
T ss_pred HHHHHHHHHHH
Confidence 88999998764
No 180
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=29.42 E-value=52 Score=22.51 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHHhhhccch
Q psy3481 85 NYKEMMSRYKQLLLYIKSAVTR 106 (340)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~v~k 106 (340)
..++|..+|++|+.|+ ..|||
T Consensus 13 ~~eel~~Y~~~L~~Yi-nlitR 33 (36)
T cd00126 13 SPEELRQYLAALREYI-NLITR 33 (36)
T ss_pred CHHHHHHHHHHHHHHH-HHHcc
Confidence 3578999999999999 77776
No 181
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.76 E-value=37 Score=32.13 Aligned_cols=13 Identities=38% Similarity=0.409 Sum_probs=5.7
Q ss_pred hhhchHHHHHHHH
Q psy3481 208 AQKNNKKLKKLYE 220 (340)
Q Consensus 208 ~l~n~~~l~~~~~ 220 (340)
...|+.-|..+..
T Consensus 198 E~~N~~SL~~~~~ 210 (240)
T PF05764_consen 198 EEENLKSLNKYEE 210 (240)
T ss_pred HHHHHHHHHHHHH
Confidence 3345444444443
No 182
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=28.65 E-value=43 Score=23.57 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=24.3
Q ss_pred HhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 153 NTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 153 n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
.+-||+.|++|++...+-.++.+|...
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 467999999999999999999999954
No 183
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=28.49 E-value=53 Score=22.46 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHHhhhccchh
Q psy3481 85 NYKEMMSRYKQLLLYIKSAVTRN 107 (340)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~v~k~ 107 (340)
..+++.++|.+|..|+ ..|||.
T Consensus 13 speel~~Y~~~L~~Y~-~lvtRp 34 (36)
T PF00159_consen 13 SPEELAQYYAALRHYI-NLVTRP 34 (36)
T ss_dssp SHHHHHHHHHHHHHHH-HHHTTT
T ss_pred CHHHHHHHHHHHHHHH-HHHccC
Confidence 4578999999999999 777773
No 184
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=28.33 E-value=5.1e+02 Score=24.43 Aligned_cols=63 Identities=5% Similarity=0.055 Sum_probs=40.4
Q ss_pred HhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhh
Q psy3481 153 NTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSL 223 (340)
Q Consensus 153 n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~ 223 (340)
...++.+++..++....-..+.+..+....+. ...+..+..-..++...++.......|....
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~--------~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS--------MLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc--------chhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 46678899999999999999988877654211 1111222222335666777777777776653
No 185
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=28.12 E-value=3.3e+02 Score=26.65 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhh
Q psy3481 66 GEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNY 108 (340)
Q Consensus 66 ~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~ 108 (340)
-+|-+++++|+++.+...|+++...+.+++|++- .+...+++
T Consensus 149 ~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~ 190 (280)
T COG3629 149 EELFIKALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAY 190 (280)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHH
Confidence 3688999999999999999999999999998773 34444433
No 186
>KOG2003|consensus
Probab=28.00 E-value=80 Score=33.47 Aligned_cols=120 Identities=16% Similarity=0.215 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhccccc-ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCC
Q psy3481 47 PKAALQSFQKVLDLES-GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKN 125 (340)
Q Consensus 47 ~~~a~~~~~~v~~~~~-~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~ 125 (340)
..+|+.-|+-|+...- +..|.-+ -.+..|+|++.+|.+.+.+|+--|.-. ++|.|.---|++|+|=--|-....
T Consensus 217 ~~ealntyeiivknkmf~nag~lk----mnigni~~kkr~fskaikfyrmaldqv-psink~~rikil~nigvtfiq~gq 291 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILK----MNIGNIHFKKREFSKAIKFYRMALDQV-PSINKDMRIKILNNIGVTFIQAGQ 291 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceee----eeecceeeehhhHHHHHHHHHHHHhhc-cccchhhHHHHHhhcCeeEEeccc
Confidence 3566666666664332 2333211 134578889999999999998887766 788887777777766332222211
Q ss_pred hhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHh
Q psy3481 126 MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQ 178 (340)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~ 178 (340)
-+. -+...-.|.+.+.| |++...|.-++|+.+.....-+-|.++..
T Consensus 292 y~d---ainsfdh~m~~~pn----~~a~~nl~i~~f~i~d~ekmkeaf~kli~ 337 (840)
T KOG2003|consen 292 YDD---AINSFDHCMEEAPN----FIAALNLIICAFAIGDAEKMKEAFQKLID 337 (840)
T ss_pred chh---hHhhHHHHHHhCcc----HHhhhhhhhhheecCcHHHHHHHHHHHhc
Confidence 111 22333333344433 56667788889999999888888887753
No 187
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=27.83 E-value=8.5e+02 Score=26.83 Aligned_cols=97 Identities=4% Similarity=-0.078 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhh
Q psy3481 70 FKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLW 149 (340)
Q Consensus 70 fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf 149 (340)
-.++..|..+...+|++++....+..++.+- +....+ .+++........-.++-.+.+..+++-+.+.+.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a--------~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~- 155 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEA--------FILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR- 155 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHH--------HHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH-
Confidence 4566777778888888888888888887765 432211 122211000011112223333333333323322
Q ss_pred HhHHhHHHHhhhcccchHHHHHHHHHHHh
Q psy3481 150 FKTNTKLGKLYFDREDFNKLSRILKQLHQ 178 (340)
Q Consensus 150 ~k~n~kL~~l~~~m~~~~~lp~~l~~lH~ 178 (340)
.-..++.++-+++++..+-..+.++..
T Consensus 156 --~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 156 --EILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred --HHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 235577888899999999999998887
No 188
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=27.46 E-value=60 Score=22.24 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHHhhhccch
Q psy3481 85 NYKEMMSRYKQLLLYIKSAVTR 106 (340)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~v~k 106 (340)
..+++..+|.+|+.|+ ..|||
T Consensus 13 ~~e~l~~Y~~~L~~Yi-nlitR 33 (36)
T smart00309 13 SPEDLRQYLAALREYI-NLITR 33 (36)
T ss_pred CHHHHHHHHHHHHHHH-HHhcc
Confidence 4578999999999999 77776
No 189
>KOG0543|consensus
Probab=27.34 E-value=2.7e+02 Score=28.66 Aligned_cols=54 Identities=28% Similarity=0.340 Sum_probs=40.1
Q ss_pred cccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 42 LKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 42 ~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
+|-..+.+|++.-.+|+..+++ .-|||.+=.+.+..+|.|+.++..+++.+.+=
T Consensus 268 lKl~~~~~Ai~~c~kvLe~~~~-----N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 268 LKLKEYKEAIESCNKVLELDPN-----NVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HhhhhHHHHHHHHHHHHhcCCC-----chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 5566777888888888877622 35788888888888888888888887776643
No 190
>PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This region is found in many but not all ATP-dependent DNA ligase enzymes (6.5.1.1 from EC). It is thought to be involved in DNA binding and in catalysis. In human DNA ligase I (P18858 from SWISSPROT), and in Saccharomyces cerevisiae (Baker's yeast) (P04819 from SWISSPROT), this region was necessary for catalysis, and separated from the amino terminus by targeting elements. In Vaccinia virus (P16272 from SWISSPROT) this region was not essential for catalysis, but deletion decreases the affinity for nicked DNA and decreased the rate of strand joining at a step subsequent to enzyme-adenylate formation []. ; GO: 0003677 DNA binding, 0003910 DNA ligase (ATP) activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 2CFM_A 3RR5_A 2HIX_A 2HIV_A 3L2P_A 1X9N_A 4EQ5_A 3GDE_A.
Probab=27.31 E-value=4.2e+02 Score=23.04 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=40.1
Q ss_pred HhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccc-hhhhH
Q psy3481 80 NFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKN-DRLWF 150 (340)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~-~rlf~ 150 (340)
+.+.|+..+..+.+.+-.... ..-...-+-.-|+..||.++...+....+...++..+.++.+.. ++-|+
T Consensus 84 ~~~~GD~g~~~~~~~~~~~~~-~~~~~~lTi~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~s~~E~k~i 154 (177)
T PF04675_consen 84 YKKVGDLGEVAEEVLQKRKSE-TSKPSPLTISEVNETLDELAAASGKGSQDEKIDILKELLRRCSPEEAKWI 154 (177)
T ss_dssp HHHHS-HHHHHHHHHHHHTTT-S--SS--BHHHHHHHHHHHHH--STTHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHhcCcHHHHHHHHHhhcccc-ccCCCCCCHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhCCHHHHHHH
Confidence 334677777666655544422 11134556677889999998765444445577778888887754 66664
No 191
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=27.04 E-value=99 Score=27.60 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=21.0
Q ss_pred cchhhHHHHHHHHHHHhcCCH-HHHHHHHHHHHHH
Q psy3481 261 VPFVPGLSIFFNIELMANLNV-LTWLRFIIWMALE 294 (340)
Q Consensus 261 vP~iP~l~il~~l~L~~~L~~-~tw~~~~vW~~iG 294 (340)
+-++|.++++++.+|.-.+.. +.|..+.+.++.+
T Consensus 81 vYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg~~ 115 (150)
T COG3086 81 VYIFPLVGLFLGAILAQYLFFSELIVIFGAFLGLA 115 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 446788888888888666643 3455555554333
No 192
>PF04546 Sigma70_ner: Sigma-70, non-essential region; InterPro: IPR007631 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This domain is found in the primary vegetative sigma factor. Its function is unclear, and it can be removed without apparent loss of function [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SIG_A 3IYD_F.
Probab=26.89 E-value=34 Score=31.48 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=10.2
Q ss_pred cccCCHHHHHHHHHhhcc
Q psy3481 42 LKEDDPKAALQSFQKVLD 59 (340)
Q Consensus 42 ~~~~~~~~a~~~~~~v~~ 59 (340)
....+|++|++.|.+|-.
T Consensus 72 ~~~~~~e~v~~~f~~i~~ 89 (211)
T PF04546_consen 72 DEGPDPEEVLERFDEIRK 89 (211)
T ss_dssp -----HHHHHHHHHHHCC
T ss_pred hccCCHHHHHHHHHHHHH
Confidence 445677888888888743
No 193
>KOG2124|consensus
Probab=26.89 E-value=9.1e+02 Score=27.55 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccc-hhhhHhHHhHHHH
Q psy3481 112 SINSILDYISTSKNMELLQDFYETTLEALKDAKN-DRLWFKTNTKLGK 158 (340)
Q Consensus 112 ~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~-~rlf~k~n~kL~~ 158 (340)
-|+.+++.-+-+.-.+..++..++++|++++-.+ .++.+.+++.++-
T Consensus 393 ~i~~li~~~~~s~ai~~~~e~~k~alegl~yyh~Y~~~~L~v~~t~gf 440 (883)
T KOG2124|consen 393 QIDSLIKKENYSEAIELCKELMKLALEGLDYYHTYYWLPLRVIVTLGF 440 (883)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhchHHHhheeeEEEeehhHHHH
Confidence 3444444443333345557788888888888755 8999988877765
No 194
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=26.62 E-value=1.3e+02 Score=28.86 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=6.2
Q ss_pred ccccccchhhHH
Q psy3481 256 FKVPLVPFVPGL 267 (340)
Q Consensus 256 FrvPlvP~iP~l 267 (340)
++.|++|++|++
T Consensus 167 ~~~~l~~l~~~~ 178 (333)
T PF03176_consen 167 VRAALLPLLPVL 178 (333)
T ss_pred HHHHHHHHHHHH
Confidence 445555555543
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=26.49 E-value=3.9e+02 Score=22.48 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHh
Q psy3481 72 ALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFK 151 (340)
Q Consensus 72 a~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k 151 (340)
++-+..-.+-..|+.++....|++-+.-- .+ .+...+..|..-++-.+....++-..+..+.++....+-+.-.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g---L~---~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~ 76 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAG---LS---GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAA 76 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHH
Confidence 45677778888999999999999997732 22 2222345555544433222233344444455544322222223
Q ss_pred HHhHHHHhhhcccchHHHHHHH
Q psy3481 152 TNTKLGKLYFDREDFNKLSRIL 173 (340)
Q Consensus 152 ~n~kL~~l~~~m~~~~~lp~~l 173 (340)
+..-++..++.++|....-.++
T Consensus 77 l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 77 LRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHH
Confidence 3355777888999988876554
No 196
>KOG1824|consensus
Probab=26.19 E-value=72 Score=36.46 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHHHHH
Q psy3481 91 SRYKQLLLYIKSAVTRNYSEKSINSILD 118 (340)
Q Consensus 91 ~~~~~l~~~~~~~v~k~~~~k~i~~ild 118 (340)
.++++-.+++-+++.|--.+|++++...
T Consensus 427 ~~L~~~~~~iVkai~~qlr~ks~kt~~~ 454 (1233)
T KOG1824|consen 427 SMLSDQVPLIVKAIQKQLREKSVKTRQG 454 (1233)
T ss_pred HHHHhhhHHHHHHHHHHHhhccccchhh
Confidence 4555555666566666666666655444
No 197
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=26.15 E-value=1.2e+02 Score=25.15 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCC
Q psy3481 73 LKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKN 125 (340)
Q Consensus 73 ~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~ 125 (340)
+..++-+|...|+++++++..+++-.--.+...-....+.-..|++|....++
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~~ 94 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLGN 94 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCCh
Confidence 45678899999999999999988865110111111111222346888876643
No 198
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=25.83 E-value=35 Score=41.13 Aligned_cols=6 Identities=83% Similarity=1.652 Sum_probs=2.9
Q ss_pred hHHHhh
Q psy3481 312 DFFEAF 317 (340)
Q Consensus 312 ~F~eaF 317 (340)
+|||||
T Consensus 570 d~~esf 575 (2849)
T PTZ00415 570 DFYEAF 575 (2849)
T ss_pred HHHHHH
Confidence 445544
No 199
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=25.66 E-value=2.9e+02 Score=26.51 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy3481 279 LNVLTWLRFIIWMALEC 295 (340)
Q Consensus 279 L~~~tw~~~~vW~~iG~ 295 (340)
+...+.+.-++|+++.+
T Consensus 100 i~~~AlvAPi~Wl~VaL 116 (251)
T PF14798_consen 100 ITGRALVAPITWLAVAL 116 (251)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 34446666778888875
No 200
>KOG2274|consensus
Probab=25.14 E-value=32 Score=38.67 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=8.7
Q ss_pred ccccCCCCCCCccchhhhh
Q psy3481 17 GLEYSEDSNSEPDVDLENQ 35 (340)
Q Consensus 17 ~~~~~~~~~~~~~~~lEn~ 35 (340)
++||+|||+|++|.-.+-.
T Consensus 943 ~D~~eDDe~dd~~~lkd~~ 961 (1005)
T KOG2274|consen 943 VDEYEDDEEDDPDLLKDPL 961 (1005)
T ss_pred ccccccccccchhhccCcc
Confidence 3445555555554433333
No 201
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=25.11 E-value=6.3e+02 Score=25.33 Aligned_cols=107 Identities=9% Similarity=0.197 Sum_probs=62.4
Q ss_pred ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHh-------hcCCC----hhHHHH
Q psy3481 63 GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYI-------STSKN----MELLQD 131 (340)
Q Consensus 63 ~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~-------~~~~~----~~~~~~ 131 (340)
...+.|.|.-+||+.+++.+.++-+.|.+...+ |. ...+|+.++.-| -...| ....|.
T Consensus 201 ~~~~a~lf~~lk~yl~l~~r~RDk~~~~~l~~e--~~---------~~qllkd~v~ifYepl~rv~k~a~l~~~l~d~q~ 269 (341)
T PF12825_consen 201 ENEDAWLFSDLKEYLKLYLRKRDKEQMIQLWCE--PE---------LTQLLKDLVTIFYEPLVRVHKAADLSEALSDFQK 269 (341)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhHHHHHHHHcC--hh---------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 356889999999999999999998887776654 22 223333333321 11111 233466
Q ss_pred HHHHHHHHHhhccch-hhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 132 FYETTLEALKDAKND-RLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 132 ~~~~~~~~~~~~~~~-rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
|.+-..+.++..++. +.=-..+++-.-+-+-..+-+.+-+++-++|..+
T Consensus 270 Fi~DlI~~~~~~~~~~~~~~~~~~V~~~v~Ll~rH~~~~y~FvH~v~~~d 319 (341)
T PF12825_consen 270 FIDDLIKLVEKLRNGSGSSDPFPSVEDFVDLLDRHEQSFYKFVHEVHKND 319 (341)
T ss_pred HHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 666666655555443 1111133444445555566666677777777764
No 202
>PF12854 PPR_1: PPR repeat
Probab=24.44 E-value=84 Score=20.27 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=20.0
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHH
Q psy3481 73 LKQMIKINFKLSNYKEMMSRYKQL 96 (340)
Q Consensus 73 ~~q~~k~~~~~~~~~~~~~~~~~l 96 (340)
.--+|+-+++.|+.+++.+.+.++
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC
Confidence 456789999999999999888764
No 203
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=24.30 E-value=2.9e+02 Score=31.61 Aligned_cols=75 Identities=8% Similarity=0.084 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhhcC--CCCCccccccccchhHHHH-HHHHHHHhhhchHHHHHHHH---------hhhhhhhhhhHHH
Q psy3481 166 FNKLSRILKQLHQSCQ--TDDGEDDLKKGTQLLEIYA-LEIQMYTAQKNNKKLKKLYE---------QSLHIKSAIPHPL 233 (340)
Q Consensus 166 ~~~lp~~l~~lH~~~k--tp~~a~~~~~~~llleV~a-leI~~~~~l~n~~~l~~~~~---------~~~~i~~si~~~~ 233 (340)
-.++|..+..+..-.| .++.++....|+.++-+.. +++- ..++.+|. ..+.+..++..++
T Consensus 799 GTSlPEl~~S~~aA~~~~~~d~aigNv~GSNifNi~l~lGv~--------~~i~~~~~~~~~~~~~V~~~~l~~~v~l~~ 870 (928)
T TIGR00845 799 GTSVPDTFASKVAATQDQYADASIGNVTGSNAVNVFLGIGVA--------WSIAAIYHAANGTQFKVSPGTLAFSVTLFT 870 (928)
T ss_pred ecCcHHHHHHHHHHHcCCCCceeEEeecchHHHHHHHHHHHH--------HHHhhhhhcccCceEEECccchhHHHHHHH
Confidence 4578888877777666 3676666666777777655 2221 11222221 1134555666666
Q ss_pred HHHHHHHHhhheecc
Q psy3481 234 IMGVIRGLFVIEAHE 248 (340)
Q Consensus 234 ~~~vv~~~lIilR~~ 248 (340)
++.++.++++++|++
T Consensus 871 ~~a~l~~~vl~~rr~ 885 (928)
T TIGR00845 871 IFAFICIGVLLYRRR 885 (928)
T ss_pred HHHHHHHHHHHHhhc
Confidence 666666666666654
No 204
>KOG4555|consensus
Probab=24.19 E-value=2.5e+02 Score=25.21 Aligned_cols=49 Identities=22% Similarity=0.204 Sum_probs=21.2
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
+-+.|++.|.+-+..-+ ++ =.++-.=.+-+.-+|+.++.++-+.+-+..
T Consensus 58 ~Ld~AlE~F~qal~l~P-~r----aSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 58 DLDGALELFGQALCLAP-ER----ASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred chHHHHHHHHHHHHhcc-cc----hHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 34555555555554431 10 112222233344445555555555554443
No 205
>KOG1306|consensus
Probab=23.56 E-value=51 Score=34.94 Aligned_cols=54 Identities=11% Similarity=0.066 Sum_probs=33.1
Q ss_pred HHhhhhhhhhhhHHHHHHHHHHHhhheecccCCCCCcccccccchhhHHHHHHHHH
Q psy3481 219 YEQSLHIKSAIPHPLIMGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIE 274 (340)
Q Consensus 219 ~~~~~~i~~si~~~~~~~vv~~~lIilR~~~p~~~r~FrvPlvP~iP~l~il~~l~ 274 (340)
+..+++.+.+++.+.++.++++.++++|++. ......=|.++=+-..++++.+|
T Consensus 528 ~v~~g~l~FsvtlF~i~s~~~i~vl~~RR~~--iggELGGP~~~k~~ta~~fv~lW 581 (596)
T KOG1306|consen 528 YVEAGTLAFSVTLFTIFSVVCIVVLVYRRPH--IGGELGGPRGWKLLTAALFVSLW 581 (596)
T ss_pred EeccceeeeehHHHHHHHHHhheeeEEeccc--cCcccCCcchHHHHHHHHHHHHH
Confidence 3444778888998889999998888888743 33333444443333333444433
No 206
>KOG2114|consensus
Probab=23.41 E-value=3.4e+02 Score=30.75 Aligned_cols=51 Identities=8% Similarity=0.311 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhc--cchhhHHHHHHHHHHHhh
Q psy3481 71 KALKQMIKINFKLSNYKEMMSRYKQLLLYIKSA--VTRNYSEKSINSILDYIS 121 (340)
Q Consensus 71 ka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~--v~k~~~~k~i~~ild~~~ 121 (340)
.-.++-..-++++|++++++..|.+.++++-++ +.|---++.|+++.+|+.
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe 421 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLE 421 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHH
Confidence 334455567889999999999999999998642 455556778888888875
No 207
>KOG0553|consensus
Probab=22.79 E-value=5.8e+02 Score=25.40 Aligned_cols=90 Identities=21% Similarity=0.227 Sum_probs=53.8
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHHh-hhcc-chhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhH
Q psy3481 73 LKQMIKINFKLSNYKEMMSRYKQLLLYI-KSAV-TRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWF 150 (340)
Q Consensus 73 ~~q~~k~~~~~~~~~~~~~~~~~l~~~~-~~~v-~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~ 150 (340)
||.=..=..+.++|+++++.|++-+.+. +.+| -=|+++- |. ... .-..-++-|+.||.- +-=+.
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAA-------y~-~Lg---~~~~AVkDce~Al~i---Dp~ys 149 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAA-------YS-KLG---EYEDAVKDCESALSI---DPHYS 149 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHH-------HH-Hhc---chHHHHHHHHHHHhc---ChHHH
Confidence 4444455778899999999999998876 2233 1122220 11 000 011235555555543 33345
Q ss_pred hHHhHHHHhhhcccchHHHHHHHHHH
Q psy3481 151 KTNTKLGKLYFDREDFNKLSRILKQL 176 (340)
Q Consensus 151 k~n~kL~~l~~~m~~~~~lp~~l~~l 176 (340)
|+-.||++.+++++++..+-..+++.
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKa 175 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKA 175 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhh
Confidence 55678999999999988877664443
No 208
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=22.78 E-value=1.8e+02 Score=32.42 Aligned_cols=44 Identities=9% Similarity=0.152 Sum_probs=23.2
Q ss_pred ccccccchhhH-HHHHHHH----HHHhcCCHHHHHHHHHHHHHHH-hhhh
Q psy3481 256 FKVPLVPFVPG-LSIFFNI----ELMANLNVLTWLRFIIWMALEC-GGKM 299 (340)
Q Consensus 256 FrvPlvP~iP~-l~il~~l----~L~~~L~~~tw~~~~vW~~iG~-YG~r 299 (340)
++.|+.|++|+ ++++.++ ++..+++..+....++-+++|+ ||++
T Consensus 293 ~~~~l~~l~~i~~s~~~~~~~~~l~~~~ln~~s~~~~~lliGi~vD~~I~ 342 (862)
T TIGR03480 293 PRLVFAVLVTLIVGLILTAAFATLAVGHLNLISVAFAVLFIGLGVDFAIQ 342 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45555555555 2333322 2334566666666555566665 6654
No 209
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=22.76 E-value=2.6e+02 Score=24.92 Aligned_cols=43 Identities=9% Similarity=0.024 Sum_probs=22.6
Q ss_pred chhhHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHH----hhhhhcccc
Q psy3481 262 PFVPGLSIFFNIELMAN-LNVLTWLRFIIWMALEC----GGKMHLREG 304 (340)
Q Consensus 262 P~iP~l~il~~l~L~~~-L~~~tw~~~~vW~~iG~----YG~rhS~~~ 304 (340)
-++|++.+.....++.. ....+|.-.+.-.++|. .=+++|+.+
T Consensus 34 IIlPplfmstG~lmf~~P~~~~~~~~~l~A~~~G~lFs~~Li~ts~fE 81 (148)
T PF07301_consen 34 IILPPLFMSTGFLMFVFPFFRPPWLEVLEAFLVGALFSYPLIKTSKFE 81 (148)
T ss_pred HHHhHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhceEE
Confidence 56777776655544332 22345655555556663 334455543
No 210
>COG4420 Predicted membrane protein [Function unknown]
Probab=22.25 E-value=1.7e+02 Score=27.21 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=18.0
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHhh
Q psy3481 214 KLKKLYEQSLHIKSAIPHPLIMGVIRGLFV 243 (340)
Q Consensus 214 ~l~~~~~~~~~i~~si~~~~~~~vv~~~lI 243 (340)
+++.++++..-+..-+..+++++++|..++
T Consensus 50 ~ia~f~Gsw~fil~~~~~ll~Wi~lNl~~~ 79 (191)
T COG4420 50 KIARFGGSWAFILTFTLLLLLWIVLNLFLV 79 (191)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHhhh
Confidence 344555555455555666667777777655
No 211
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=22.20 E-value=3.2e+02 Score=19.87 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHH
Q psy3481 72 ALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILD 118 (340)
Q Consensus 72 a~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild 118 (340)
.+..+.--++|.|+|++.+++...+|..= +.|.-++.+..+|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e----P~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE----PDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT----TS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC----CCcHHHHHHHHHHH
Confidence 35567777899999999999999988743 34666666666665
No 212
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=22.00 E-value=78 Score=20.47 Aligned_cols=32 Identities=16% Similarity=0.425 Sum_probs=23.8
Q ss_pred HHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHH
Q psy3481 54 FQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMM 90 (340)
Q Consensus 54 ~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~ 90 (340)
|++.|+.+ + .-..++-++..++..+|++++..
T Consensus 2 y~kAie~~-P----~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-P----NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-C----CCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666665 2 34567889999999999998864
No 213
>TIGR03486 cas_csx13_C CRISPR-associated protein, Cas_csx13 family, C-terminal region. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the C-terminal region or upstream gene; the N-terminal region is modelled by TIGR03485. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.
Probab=21.71 E-value=4.1e+02 Score=23.87 Aligned_cols=60 Identities=17% Similarity=0.271 Sum_probs=40.7
Q ss_pred cchhhHHHHHHHHH-----HHHhhhcC--HHHHHHHHHHHHHHhhhccchhhHHHHHHHH-HHHhhcC
Q psy3481 64 ERGEWGFKALKQMI-----KINFKLSN--YKEMMSRYKQLLLYIKSAVTRNYSEKSINSI-LDYISTS 123 (340)
Q Consensus 64 ~~~~w~fka~~q~~-----k~~~~~~~--~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~i-ld~~~~~ 123 (340)
+.-+|-++|+.+.. +|+.+.++ ....-..|++-..=+++.+.|.|++..+++. .|+.+..
T Consensus 48 e~eq~fiqa~HeAlr~~~~qI~~~tk~~g~~~~~~~~e~e~erir~~l~r~kt~~~fr~~i~df~srA 115 (152)
T TIGR03486 48 EAEQWFVQSFHEALRRIYAKIASHTKRRGSETLGDRWKRENERIYSSLARAKTSEQFRTFIADLWARA 115 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHc
Confidence 44568888777665 45555544 1234566777777777889999999999875 4666644
No 214
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=21.31 E-value=2e+02 Score=24.76 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=31.5
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcC-------HHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSN-------YKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~-------~~~~~~~~~~l~~~~ 100 (340)
+..+.++|++.|++.++..+.. -.++..++.++..+|+ +++.+..|++-+.+.
T Consensus 84 ~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~ 143 (172)
T PRK02603 84 SNGEHDKALEYYHQALELNPKQ-----PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYW 143 (172)
T ss_pred HcCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHH
Confidence 3567799999999999876222 2334455666666555 444444444444433
No 215
>KOG0548|consensus
Probab=20.97 E-value=6.6e+02 Score=26.97 Aligned_cols=91 Identities=14% Similarity=0.223 Sum_probs=59.0
Q ss_pred HHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHH
Q psy3481 77 IKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKL 156 (340)
Q Consensus 77 ~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL 156 (340)
..-+|+.|+|.+.+..|++.+..- |.=.|.|+-... =|+.-.. ...-..-|..||+- +--|+|.-+|.
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa----c~~kL~~----~~~aL~Da~~~ieL---~p~~~kgy~RK 432 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA----CYLKLGE----YPEALKDAKKCIEL---DPNFIKAYLRK 432 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH----HHHHHhh----HHHHHHHHHHHHhc---CchHHHHHHHH
Confidence 467899999999999999976543 555666664332 2221110 01112225555554 45677777888
Q ss_pred HHhhhcccchHHHHHHHHHHHhh
Q psy3481 157 GKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 157 ~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
+-+++.|.+|..+...+.+=...
T Consensus 433 g~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 433 GAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998777655443
No 216
>KOG2082|consensus
Probab=20.59 E-value=3.6e+02 Score=30.52 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=23.5
Q ss_pred cchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy3481 261 VPFVPGLSIFFNIELMANLNVLTWLRFIIWMALE 294 (340)
Q Consensus 261 vP~iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG 294 (340)
.+.+..+|+.+|+++|+- .+|...++-+++.
T Consensus 607 HW~LSflG~sLC~~iMF~---~SWyyAlvAm~~a 637 (1075)
T KOG2082|consen 607 HWSLSFLGASLCLAIMFI---SSWYYALVAMLIA 637 (1075)
T ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 677999999999999875 4566666666554
No 217
>COG2364 Predicted membrane protein [Function unknown]
Probab=20.46 E-value=6.1e+02 Score=23.93 Aligned_cols=60 Identities=8% Similarity=0.057 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHhhheecccCCCCCcccccccchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy3481 229 IPHPLIMGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALEC 295 (340)
Q Consensus 229 i~~~~~~~vv~~~lIilR~~~p~~~r~FrvPlvP~iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG~ 295 (340)
...++.+.++.+..+.+|+++. +=.++..=++|+++.+++..--++.+|..-.+|+.+|+
T Consensus 55 wsi~l~~~li~~~~~~lr~~~~-------Lg~lln~lliG~fiD~~l~l~~~p~~~~~k~i~~~iG~ 114 (210)
T COG2364 55 WSIILGSCLIGCTWILLRKKPG-------LGTLLNALLIGVFIDLFLFLLPTPTALFSKLIFFLIGL 114 (210)
T ss_pred HHHHHHHHHHHHHHHHHhcchh-------HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 3344555566666666655421 11245566677777777766668999999999988885
No 218
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=20.19 E-value=2.9e+02 Score=28.71 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=45.0
Q ss_pred hcCHHHHHHHHHHHHHHhhhccch------h-----hHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhh
Q psy3481 83 LSNYKEMMSRYKQLLLYIKSAVTR------N-----YSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLW 149 (340)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~v~k------~-----~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf 149 (340)
.++++.|..+|.+|-..=+..+.. | .+=|.||.+|...+.-+--..-.+++..|.+||+..+-+.|+
T Consensus 350 ~~d~~~m~k~y~~l~~~n~~l~~~~~~R~~N~~~l~~~lk~vn~~iq~a~~LRvG~~~~~~v~~cR~Aik~nn~~~l~ 427 (431)
T PF14782_consen 350 MGDMKNMRKYYAELYDLNRDLINEYKIRCNNHEELLSSLKEVNQIIQKASRLRVGKAKTQVVAACRAAIKNNNINALF 427 (431)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHhcCHHHHH
Confidence 678888999998886543222111 2 245788899988775432233456899999999977656664
No 219
>PF05680 ATP-synt_E: ATP synthase E chain; InterPro: IPR008386 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit E found in the F0 complex of F-ATPases. Mitochondrial F-ATPases can associate together to form dimeric or oligomeric complexes, such interactions involving the physical association of membrane-embedded F0 complexes. In yeast, the F0 complex E subunit appears to play an important role in supporting F-ATPase dimerisation. This subunit is anchored to the inner mitochondrial membrane via its N-terminal region, which is involved in stabilising subunits G and K of the F0 complex. The C-terminal region of subunit E is hydrophilic, protruding into the intermembrane space where it can also help stabilise the F-ATPase dimer complex []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=20.18 E-value=62 Score=26.10 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHHH---hhhhhc
Q psy3481 280 NVLTWLRFIIWMALEC---GGKMHL 301 (340)
Q Consensus 280 ~~~tw~~~~vW~~iG~---YG~rhS 301 (340)
...+++.++-|.++|+ ||..|-
T Consensus 5 ~VSp~inv~RySaL~~Gv~YG~~~~ 29 (86)
T PF05680_consen 5 QVSPLINVLRYSALGLGVVYGAYHQ 29 (86)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHH
Confidence 3456778888866653 888763
Done!