Query psy3481
Match_columns 340
No_of_seqs 238 out of 1046
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 17:50:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3txn_A 26S proteasome regulato 100.0 1.1E-36 3.7E-41 302.1 17.8 215 63-340 12-231 (394)
2 4b4t_P 26S proteasome regulato 99.8 3.7E-20 1.3E-24 185.3 13.3 245 31-339 16-268 (445)
3 4b4t_Q 26S proteasome regulato 99.8 9.8E-18 3.3E-22 158.9 20.2 240 38-339 10-269 (434)
4 4b4t_R RPN7, 26S proteasome re 99.4 5.4E-13 1.9E-17 132.4 6.6 238 32-340 9-258 (429)
5 3l1l_A Arginine/agmatine antip 98.7 8.7E-09 3E-13 100.2 4.6 126 155-295 296-421 (445)
6 4djk_A Probable glutamate/gamm 98.2 1.1E-06 3.7E-11 87.1 6.0 112 156-277 312-428 (511)
7 3ro2_A PINS homolog, G-protein 97.7 0.0075 2.6E-07 52.7 20.9 176 43-225 17-212 (338)
8 3sf4_A G-protein-signaling mod 97.6 0.011 3.7E-07 53.9 21.1 177 43-226 21-217 (406)
9 3ro2_A PINS homolog, G-protein 97.6 0.0083 2.8E-07 52.4 18.6 134 44-177 56-210 (338)
10 4a1s_A PINS, partner of inscut 97.5 0.015 5.3E-07 53.6 21.1 177 43-226 60-253 (411)
11 3gia_A Uncharacterized protein 97.5 2.9E-05 1E-09 75.3 2.2 101 156-284 295-395 (444)
12 3ro3_A PINS homolog, G-protein 97.5 0.0082 2.8E-07 46.7 15.7 138 44-181 22-160 (164)
13 4a1s_A PINS, partner of inscut 97.4 0.015 5.2E-07 53.7 19.7 175 47-227 199-374 (411)
14 3sf4_A G-protein-signaling mod 97.3 0.02 6.8E-07 52.1 18.9 56 45-100 61-117 (406)
15 3ulq_A Response regulator aspa 97.3 0.034 1.2E-06 51.6 20.5 178 43-226 115-294 (383)
16 3edt_B KLC 2, kinesin light ch 97.2 0.027 9.3E-07 48.1 17.0 176 46-225 16-198 (283)
17 3nf1_A KLC 1, kinesin light ch 97.2 0.055 1.9E-06 47.2 19.2 178 44-225 40-224 (311)
18 3u3w_A Transcriptional activat 97.1 0.05 1.7E-06 48.9 19.3 178 42-226 86-267 (293)
19 3q15_A PSP28, response regulat 97.1 0.051 1.7E-06 50.5 19.4 177 43-226 113-291 (378)
20 1qqe_A Vesicular transport pro 97.1 0.089 3E-06 47.5 20.5 178 44-226 50-229 (292)
21 2qfc_A PLCR protein; TPR, HTH, 96.9 0.096 3.3E-06 47.0 18.6 178 43-226 87-267 (293)
22 2ifu_A Gamma-SNAP; membrane fu 96.8 0.074 2.5E-06 48.5 17.7 173 44-223 49-222 (307)
23 3edt_B KLC 2, kinesin light ch 96.8 0.15 5.1E-06 43.4 18.1 136 44-179 56-198 (283)
24 3ro3_A PINS homolog, G-protein 96.7 0.13 4.3E-06 39.7 17.5 152 67-224 6-157 (164)
25 3qky_A Outer membrane assembly 96.7 0.26 8.8E-06 43.0 20.2 145 32-181 15-179 (261)
26 3ulq_A Response regulator aspa 96.6 0.23 7.8E-06 46.0 19.8 171 45-226 198-369 (383)
27 3nf1_A KLC 1, kinesin light ch 96.6 0.17 5.7E-06 44.0 17.9 136 44-179 82-224 (311)
28 3gw4_A Uncharacterized protein 96.6 0.22 7.4E-06 40.8 21.0 176 43-229 4-180 (203)
29 3q15_A PSP28, response regulat 96.4 0.48 1.6E-05 43.9 20.7 148 72-225 103-251 (378)
30 2yhc_A BAMD, UPF0169 lipoprote 96.4 0.35 1.2E-05 41.6 18.3 143 36-181 8-178 (225)
31 2qfc_A PLCR protein; TPR, HTH, 96.4 0.11 3.7E-06 46.7 15.4 134 44-177 128-264 (293)
32 3gw4_A Uncharacterized protein 96.4 0.16 5.5E-06 41.6 15.4 137 44-181 39-178 (203)
33 3u3w_A Transcriptional activat 96.4 0.13 4.4E-06 46.2 16.0 133 44-180 128-267 (293)
34 3t5x_A PCI domain-containing p 96.2 0.00093 3.2E-08 60.1 0.5 44 297-340 21-64 (203)
35 3vtx_A MAMA; tetratricopeptide 96.1 0.42 1.4E-05 38.9 17.5 154 44-226 18-171 (184)
36 1hz4_A MALT regulatory protein 95.7 1.2 4.3E-05 40.4 21.8 175 43-225 26-203 (373)
37 2ifu_A Gamma-SNAP; membrane fu 95.5 1.3 4.6E-05 39.9 21.7 174 46-226 6-185 (307)
38 4b4t_Q 26S proteasome regulato 95.5 0.37 1.3E-05 44.7 15.2 137 45-181 109-247 (434)
39 4b4t_R RPN7, 26S proteasome re 95.5 0.13 4.6E-06 50.4 12.5 168 11-181 4-239 (429)
40 4gcn_A Protein STI-1; structur 94.9 0.54 1.9E-05 37.1 12.4 105 71-184 9-117 (127)
41 4b4t_O 26S proteasome regulato 94.8 0.036 1.2E-06 54.2 6.2 51 110-165 4-54 (393)
42 3ieg_A DNAJ homolog subfamily 94.7 2.1 7.2E-05 37.5 18.1 158 43-222 132-298 (359)
43 1xnf_A Lipoprotein NLPI; TPR, 94.7 1.8 6.2E-05 36.8 17.2 134 34-180 7-141 (275)
44 2ho1_A Type 4 fimbrial biogene 94.5 1.9 6.4E-05 36.4 17.2 51 44-99 50-100 (252)
45 3hym_B Cell division cycle pro 94.5 2.2 7.6E-05 37.1 18.3 50 46-100 106-155 (330)
46 1hz4_A MALT regulatory protein 94.5 2.8 9.5E-05 38.1 18.7 174 44-223 66-242 (373)
47 3uq3_A Heat shock protein STI1 94.2 2.1 7.3E-05 35.7 18.2 56 44-99 51-108 (258)
48 3ieg_A DNAJ homolog subfamily 94.0 2.9 9.8E-05 36.6 19.0 163 43-226 166-336 (359)
49 1qqe_A Vesicular transport pro 94.0 1.1 3.7E-05 40.2 13.9 130 44-177 90-226 (292)
50 3hym_B Cell division cycle pro 94.0 2.8 9.7E-05 36.4 18.6 53 43-100 68-121 (330)
51 3qky_A Outer membrane assembly 94.0 1.3 4.4E-05 38.4 13.8 132 43-180 64-225 (261)
52 3u4t_A TPR repeat-containing p 94.0 0.57 1.9E-05 40.2 11.3 54 44-99 50-103 (272)
53 2xpi_A Anaphase-promoting comp 93.9 4.7 0.00016 38.8 19.0 51 44-99 386-436 (597)
54 3ma5_A Tetratricopeptide repea 93.9 0.26 8.8E-06 37.2 8.1 69 44-118 20-88 (100)
55 2y4t_A DNAJ homolog subfamily 93.9 2.9 9.7E-05 38.6 16.8 68 146-225 291-358 (450)
56 3cv0_A Peroxisome targeting si 93.8 3 0.0001 36.2 16.0 162 44-222 151-312 (327)
57 1fch_A Peroxisomal targeting s 93.8 2 7E-05 38.3 15.2 160 44-222 194-356 (368)
58 2ho1_A Type 4 fimbrial biogene 93.8 2.7 9.2E-05 35.4 16.5 50 44-98 84-133 (252)
59 4i17_A Hypothetical protein; T 93.7 0.5 1.7E-05 40.0 10.5 50 45-98 21-70 (228)
60 3u4t_A TPR repeat-containing p 93.7 0.57 1.9E-05 40.1 10.9 123 43-179 15-137 (272)
61 3n71_A Histone lysine methyltr 93.7 1.4 4.6E-05 44.2 15.0 136 44-179 322-464 (490)
62 2q7f_A YRRB protein; TPR, prot 93.6 2.7 9.4E-05 34.9 16.7 48 46-98 38-85 (243)
63 4abn_A Tetratricopeptide repea 93.6 1.5 5E-05 42.7 14.8 130 44-179 115-287 (474)
64 3as5_A MAMA; tetratricopeptide 93.5 2.1 7E-05 33.6 13.2 26 154-179 148-173 (186)
65 3as5_A MAMA; tetratricopeptide 93.5 2.1 7.3E-05 33.5 17.1 153 43-224 20-172 (186)
66 4eqf_A PEX5-related protein; a 93.5 4.1 0.00014 36.6 16.8 178 30-226 63-277 (365)
67 2vq2_A PILW, putative fimbrial 93.4 2.7 9.1E-05 34.3 18.9 155 43-224 20-175 (225)
68 2y4t_A DNAJ homolog subfamily 93.4 4.7 0.00016 37.1 17.6 161 43-225 155-324 (450)
69 2kc7_A BFR218_protein; tetratr 93.3 0.5 1.7E-05 34.5 8.6 73 43-120 12-84 (99)
70 4i17_A Hypothetical protein; T 93.3 2 6.9E-05 36.1 13.5 53 43-100 54-106 (228)
71 1a17_A Serine/threonine protei 93.2 2.3 7.9E-05 33.1 13.0 122 43-180 25-147 (166)
72 2fo7_A Synthetic consensus TPR 93.1 1.9 6.4E-05 31.7 15.1 119 44-179 14-132 (136)
73 2pl2_A Hypothetical conserved 93.1 0.65 2.2E-05 39.8 10.2 117 45-179 98-214 (217)
74 3t5v_B Nuclear mRNA export pro 93.1 0.25 8.5E-06 49.6 8.5 44 297-340 227-276 (455)
75 2q7f_A YRRB protein; TPR, prot 93.0 1.7 6E-05 36.1 12.6 119 43-179 69-188 (243)
76 3n71_A Histone lysine methyltr 93.0 3.2 0.00011 41.5 16.4 145 78-226 317-465 (490)
77 1hh8_A P67PHOX, NCF-2, neutrop 92.9 1.6 5.3E-05 36.1 12.0 121 43-180 18-151 (213)
78 4eqf_A PEX5-related protein; a 92.8 5.3 0.00018 35.9 17.9 50 50-100 46-95 (365)
79 4ga2_A E3 SUMO-protein ligase 92.7 1.4 4.8E-05 35.6 11.3 117 45-179 11-129 (150)
80 3fp2_A TPR repeat-containing p 92.7 5.2 0.00018 37.7 16.8 61 154-226 422-492 (537)
81 1fch_A Peroxisomal targeting s 92.6 5.3 0.00018 35.5 17.7 176 31-225 63-280 (368)
82 2gw1_A Mitochondrial precursor 92.6 3.7 0.00013 38.3 15.5 158 46-226 319-479 (514)
83 3uq3_A Heat shock protein STI1 92.5 4.1 0.00014 33.9 20.5 129 44-179 18-168 (258)
84 2vq2_A PILW, putative fimbrial 92.4 3.7 0.00013 33.3 16.7 123 43-180 54-177 (225)
85 2xpi_A Anaphase-promoting comp 92.3 1.9 6.6E-05 41.6 13.5 50 44-98 420-469 (597)
86 2xev_A YBGF; tetratricopeptide 92.3 2.8 9.5E-05 31.5 12.8 56 43-100 14-69 (129)
87 3rkv_A Putative peptidylprolyl 92.1 2 7E-05 34.4 11.4 105 69-179 10-126 (162)
88 3qou_A Protein YBBN; thioredox 92.0 4.8 0.00016 36.1 14.9 159 36-222 121-281 (287)
89 4gcn_A Protein STI-1; structur 91.8 2.6 9.1E-05 32.9 11.6 60 31-100 13-72 (127)
90 4gyw_A UDP-N-acetylglucosamine 91.8 4.8 0.00016 42.2 16.6 119 44-179 22-140 (723)
91 1w3b_A UDP-N-acetylglucosamine 91.5 2.5 8.4E-05 38.6 12.6 117 45-178 251-367 (388)
92 2kat_A Uncharacterized protein 91.4 1 3.5E-05 34.0 8.4 52 44-100 32-83 (115)
93 3fp2_A TPR repeat-containing p 91.3 8.8 0.0003 36.1 16.7 152 44-225 256-407 (537)
94 3cv0_A Peroxisome targeting si 91.3 6.6 0.00023 33.9 16.9 181 27-225 16-235 (327)
95 2pl2_A Hypothetical conserved 91.3 6.1 0.00021 33.5 19.1 163 43-226 17-181 (217)
96 2yhc_A BAMD, UPF0169 lipoprote 91.3 4.1 0.00014 34.7 13.1 130 44-179 54-213 (225)
97 4gco_A Protein STI-1; structur 91.2 3.2 0.00011 32.5 11.5 97 71-179 14-110 (126)
98 2xev_A YBGF; tetratricopeptide 91.1 0.92 3.1E-05 34.3 7.9 56 43-100 51-106 (129)
99 2e2e_A Formate-dependent nitri 91.0 1.9 6.4E-05 34.8 10.2 121 44-181 23-146 (177)
100 4abn_A Tetratricopeptide repea 90.7 11 0.00039 36.4 17.2 50 46-100 83-133 (474)
101 2vsy_A XCC0866; transferase, g 90.7 6.1 0.00021 38.7 15.4 153 45-226 3-158 (568)
102 2lni_A Stress-induced-phosphop 90.6 4.1 0.00014 30.2 11.2 52 44-100 29-80 (133)
103 1xnf_A Lipoprotein NLPI; TPR, 90.5 6.6 0.00023 33.1 13.7 30 150-179 215-244 (275)
104 3gyz_A Chaperone protein IPGC; 90.3 0.83 2.9E-05 37.9 7.5 64 32-100 36-100 (151)
105 2vyi_A SGTA protein; chaperone 90.3 4.2 0.00014 29.8 11.2 52 44-100 25-76 (131)
106 3mkr_A Coatomer subunit epsilo 89.6 11 0.00039 33.8 15.2 153 30-223 4-157 (291)
107 2gw1_A Mitochondrial precursor 89.3 5 0.00017 37.3 12.9 125 44-180 351-479 (514)
108 4b4t_S RPN3, 26S proteasome re 89.0 0.37 1.3E-05 49.2 5.1 45 296-340 276-322 (523)
109 2r5s_A Uncharacterized protein 88.8 8.4 0.00029 31.2 12.9 153 43-222 18-170 (176)
110 1elr_A TPR2A-domain of HOP; HO 88.6 5.7 0.0002 29.1 12.0 104 71-180 5-109 (131)
111 3upv_A Heat shock protein STI1 88.4 2 6.9E-05 32.6 7.9 53 43-100 16-68 (126)
112 3sz7_A HSC70 cochaperone (SGT) 88.2 2.6 9E-05 33.7 8.9 53 43-100 23-75 (164)
113 2kck_A TPR repeat; tetratricop 88.1 4.5 0.00016 28.8 9.4 51 44-99 19-69 (112)
114 2l6j_A TPR repeat-containing p 87.9 1.4 4.7E-05 32.2 6.4 53 43-100 16-68 (111)
115 1elw_A TPR1-domain of HOP; HOP 87.3 6.1 0.00021 28.3 9.8 53 43-100 16-68 (118)
116 4gco_A Protein STI-1; structur 87.2 1.4 4.8E-05 34.7 6.5 66 32-108 19-84 (126)
117 1elr_A TPR2A-domain of HOP; HO 86.9 7.3 0.00025 28.5 11.2 52 44-100 17-68 (131)
118 3qww_A SET and MYND domain-con 86.8 5.3 0.00018 39.2 11.8 57 45-101 312-371 (433)
119 3k9i_A BH0479 protein; putativ 86.7 1.5 5.2E-05 33.3 6.3 48 46-98 42-89 (117)
120 3gyz_A Chaperone protein IPGC; 86.7 7.5 0.00026 31.9 11.1 52 44-100 83-134 (151)
121 3qwp_A SET and MYND domain-con 86.6 11 0.00038 36.7 13.9 99 45-143 301-404 (429)
122 1na3_A Designed protein CTPR2; 86.6 1.9 6.4E-05 30.3 6.4 51 44-99 22-72 (91)
123 3urz_A Uncharacterized protein 86.6 4.4 0.00015 34.2 9.8 57 43-100 16-84 (208)
124 1ihg_A Cyclophilin 40; ppiase 86.4 8.5 0.00029 36.3 12.6 102 71-179 224-336 (370)
125 3bee_A Putative YFRE protein; 86.3 1.8 6E-05 33.2 6.4 49 47-100 25-73 (93)
126 1p5q_A FKBP52, FK506-binding p 86.1 10 0.00034 34.9 12.7 114 43-169 159-283 (336)
127 2xcb_A PCRH, regulatory protei 86.1 4.8 0.00016 31.6 9.2 64 32-100 18-82 (142)
128 2vsy_A XCC0866; transferase, g 86.0 15 0.00051 35.9 14.6 120 44-180 36-158 (568)
129 4g1t_A Interferon-induced prot 86.0 3.7 0.00013 38.3 9.8 130 46-181 228-365 (472)
130 4gyw_A UDP-N-acetylglucosamine 85.9 6 0.00021 41.4 12.3 118 44-178 56-173 (723)
131 3mkr_A Coatomer subunit epsilo 85.7 19 0.00067 32.2 18.4 46 46-95 80-126 (291)
132 3sz7_A HSC70 cochaperone (SGT) 85.5 12 0.00042 29.7 11.6 102 67-180 8-109 (164)
133 2vgx_A Chaperone SYCD; alterna 85.2 7.1 0.00024 31.3 10.0 61 35-100 24-85 (148)
134 2fbn_A 70 kDa peptidylprolyl i 85.2 11 0.00037 31.0 11.4 104 69-179 37-151 (198)
135 2vgx_A Chaperone SYCD; alterna 84.7 5.3 0.00018 32.1 9.0 53 43-100 67-119 (148)
136 2lni_A Stress-induced-phosphop 84.3 10 0.00035 27.9 11.3 104 64-179 10-113 (133)
137 1hh8_A P67PHOX, NCF-2, neutrop 83.9 7.1 0.00024 32.0 9.6 53 43-100 49-101 (213)
138 3rkv_A Putative peptidylprolyl 83.8 14 0.00047 29.3 11.1 63 44-107 24-99 (162)
139 1w3b_A UDP-N-acetylglucosamine 83.6 25 0.00085 31.7 18.3 48 46-98 48-95 (388)
140 2kck_A TPR repeat; tetratricop 83.5 9.8 0.00034 26.9 10.1 99 73-181 9-108 (112)
141 2pzi_A Probable serine/threoni 83.3 32 0.0011 35.0 16.2 155 42-226 402-564 (681)
142 3q49_B STIP1 homology and U bo 83.1 12 0.00042 28.1 10.1 52 43-99 21-72 (137)
143 2fbn_A 70 kDa peptidylprolyl i 83.1 12 0.0004 30.8 10.7 58 43-100 50-118 (198)
144 1hxi_A PEX5, peroxisome target 83.0 1.6 5.5E-05 34.0 4.9 65 31-100 16-81 (121)
145 4ga2_A E3 SUMO-protein ligase 82.9 2.8 9.5E-05 33.7 6.5 52 44-100 44-95 (150)
146 3upv_A Heat shock protein STI1 82.9 13 0.00044 27.9 11.5 98 71-180 5-102 (126)
147 2dba_A Smooth muscle cell asso 82.8 13 0.00045 27.9 11.2 66 32-99 28-94 (148)
148 1na0_A Designed protein CTPR3; 82.5 11 0.00039 27.0 10.1 52 43-99 21-72 (125)
149 3vtx_A MAMA; tetratricopeptide 82.1 18 0.0006 28.9 12.5 118 44-178 52-169 (184)
150 3qww_A SET and MYND domain-con 82.1 20 0.00067 35.1 13.5 105 81-185 309-417 (433)
151 2ond_A Cleavage stimulation fa 81.6 28 0.00096 30.9 17.7 155 46-224 114-269 (308)
152 1hxi_A PEX5, peroxisome target 81.4 3.2 0.00011 32.2 6.2 47 46-97 66-112 (121)
153 3k9i_A BH0479 protein; putativ 80.5 7.2 0.00024 29.4 7.8 54 45-100 4-57 (117)
154 3qwp_A SET and MYND domain-con 80.2 14 0.00048 36.0 11.6 109 77-185 294-406 (429)
155 2e2e_A Formate-dependent nitri 80.1 7.4 0.00025 31.2 8.2 53 43-100 56-111 (177)
156 1p5q_A FKBP52, FK506-binding p 79.5 25 0.00086 32.2 12.6 104 69-179 146-259 (336)
157 2hr2_A Hypothetical protein; a 79.4 12 0.00043 31.9 9.7 57 43-100 69-132 (159)
158 2l6j_A TPR repeat-containing p 78.7 1.4 4.8E-05 32.1 3.0 90 70-168 4-96 (111)
159 2xcb_A PCRH, regulatory protei 78.2 22 0.00074 27.6 12.3 108 52-177 5-113 (142)
160 3urz_A Uncharacterized protein 78.1 4 0.00014 34.4 6.2 53 43-100 66-118 (208)
161 2ond_A Cleavage stimulation fa 77.8 37 0.0013 30.0 13.1 122 44-180 147-271 (308)
162 1kt0_A FKBP51, 51 kDa FK506-bi 77.7 29 0.001 33.4 13.0 103 70-179 268-380 (457)
163 3q49_B STIP1 homology and U bo 76.1 22 0.00076 26.6 11.5 99 70-180 9-107 (137)
164 2pzi_A Probable serine/threoni 75.3 11 0.00038 38.5 9.6 117 44-179 446-563 (681)
165 1kt0_A FKBP51, 51 kDa FK506-bi 74.3 34 0.0012 32.9 12.4 58 43-100 280-347 (457)
166 1wao_1 Serine/threonine protei 73.6 15 0.00052 35.8 9.8 116 43-174 18-134 (477)
167 2v5f_A Prolyl 4-hydroxylase su 73.4 6.5 0.00022 29.9 5.7 56 45-100 19-76 (104)
168 3ffl_A Anaphase-promoting comp 73.4 4.6 0.00016 35.3 5.3 97 65-184 58-156 (167)
169 2dba_A Smooth muscle cell asso 71.9 29 0.00098 26.0 12.2 104 68-180 26-129 (148)
170 2hr2_A Hypothetical protein; a 71.2 47 0.0016 28.2 13.4 103 73-179 14-131 (159)
171 2kat_A Uncharacterized protein 70.1 30 0.001 25.5 11.4 47 49-100 3-49 (115)
172 2c2l_A CHIP, carboxy terminus 68.7 34 0.0012 30.2 10.3 96 71-178 5-100 (281)
173 2h6f_A Protein farnesyltransfe 67.6 36 0.0012 32.3 10.7 118 44-179 110-229 (382)
174 1ouv_A Conserved hypothetical 67.5 57 0.002 27.7 13.1 112 45-179 20-143 (273)
175 2r5s_A Uncharacterized protein 66.8 7.6 0.00026 31.5 5.0 50 49-104 92-141 (176)
176 1na0_A Designed protein CTPR3; 66.6 32 0.0011 24.5 11.5 99 69-179 8-106 (125)
177 2if4_A ATFKBP42; FKBP-like, al 66.2 23 0.00079 32.5 8.8 104 70-179 179-293 (338)
178 1pc2_A Mitochondria fission pr 65.6 28 0.00097 29.6 8.5 82 30-118 30-115 (152)
179 1nzn_A CGI-135 protein, fissio 63.7 47 0.0016 27.4 9.3 82 30-118 33-118 (126)
180 1elw_A TPR1-domain of HOP; HOP 63.3 36 0.0012 23.9 11.1 97 71-179 5-101 (118)
181 1ihg_A Cyclophilin 40; ppiase 62.9 15 0.0005 34.7 6.9 52 44-100 286-337 (370)
182 2c2l_A CHIP, carboxy terminus 62.8 16 0.00055 32.5 6.8 48 46-98 53-100 (281)
183 4g26_A Pentatricopeptide repea 61.9 69 0.0024 31.6 11.9 125 46-184 85-209 (501)
184 2fo7_A Synthetic consensus TPR 60.6 43 0.0015 23.9 14.9 97 72-180 3-99 (136)
185 1ouv_A Conserved hypothetical 57.4 88 0.003 26.5 13.3 113 44-179 55-179 (273)
186 3txn_A 26S proteasome regulato 55.8 1.5E+02 0.0052 28.7 14.9 107 75-181 104-212 (394)
187 2h6f_A Protein farnesyltransfe 55.1 98 0.0033 29.2 11.3 48 46-98 147-194 (382)
188 2if4_A ATFKBP42; FKBP-like, al 55.0 13 0.00043 34.3 4.8 51 43-98 242-292 (338)
189 3mv2_B Coatomer subunit epsilo 54.4 1.4E+02 0.0048 27.9 14.1 131 36-177 104-238 (310)
190 2vyi_A SGTA protein; chaperone 54.1 57 0.0019 23.3 13.0 101 67-179 9-109 (131)
191 3qou_A Protein YBBN; thioredox 51.8 19 0.00066 31.9 5.4 84 46-138 200-283 (287)
192 1wao_1 Serine/threonine protei 51.2 25 0.00087 34.2 6.5 53 43-100 52-104 (477)
193 1a17_A Serine/threonine protei 48.0 87 0.003 23.6 16.5 101 68-180 11-111 (166)
194 2ooe_A Cleavage stimulation fa 47.6 90 0.0031 29.8 9.8 123 44-181 369-494 (530)
195 4g1t_A Interferon-induced prot 47.5 1.7E+02 0.0057 26.8 12.4 27 73-99 54-80 (472)
196 2ff4_A Probable regulatory pro 45.8 29 0.001 33.1 5.9 54 43-101 183-236 (388)
197 4f3v_A ESX-1 secretion system 43.3 1.1E+02 0.0038 28.2 9.3 120 43-179 114-237 (282)
198 1zu2_A Mitochondrial import re 41.8 35 0.0012 29.0 5.2 47 47-98 62-119 (158)
199 1xi4_A Clathrin heavy chain; a 41.6 4.3E+02 0.015 30.6 15.0 136 43-183 997-1167(1630)
200 2ooe_A Cleavage stimulation fa 38.9 2.6E+02 0.0089 26.5 16.8 28 154-181 429-456 (530)
201 3o48_A Mitochondria fission 1 36.2 87 0.003 26.2 6.6 84 27-118 35-122 (134)
202 1y8m_A FIS1; mitochondria, unk 36.1 74 0.0025 26.9 6.2 83 29-119 36-122 (144)
203 2bf9_A Pancreatic hormone; tur 35.0 23 0.00077 23.3 2.1 21 85-106 13-33 (36)
204 3dss_A Geranylgeranyl transfer 31.2 1.5E+02 0.0053 27.8 8.3 60 48-111 255-314 (331)
205 1bba_A Bovine pancreatic polyp 30.3 24 0.00083 23.2 1.7 20 86-106 14-33 (36)
206 2l60_A Peptide YY; GPCR ligand 29.1 34 0.0012 23.1 2.3 23 84-107 16-38 (41)
207 2crb_A Nuclear receptor bindin 28.8 2E+02 0.007 22.7 7.1 66 77-148 22-88 (97)
208 1f8p_A Neuropeptide Y (PNPY); 28.8 20 0.00068 23.7 1.1 22 85-107 13-34 (37)
209 1xi4_A Clathrin heavy chain; a 28.6 3.7E+02 0.013 31.2 11.8 56 72-138 1107-1162(1630)
210 3lpz_A GET4 (YOR164C homolog); 26.7 4.2E+02 0.014 25.2 20.2 68 73-144 58-126 (336)
211 4f3v_A ESX-1 secretion system 24.5 1.6E+02 0.0055 27.1 7.0 63 35-99 174-237 (282)
212 4b4t_P 26S proteasome regulato 23.8 4.9E+02 0.017 25.0 12.3 103 71-173 138-241 (445)
213 1klx_A Cysteine rich protein B 22.3 1.6E+02 0.0054 22.9 5.7 44 48-98 42-89 (138)
214 1naf_A ADP-ribosylation factor 21.7 3E+02 0.01 23.4 7.6 78 53-139 21-103 (158)
215 2wpv_A GET4, UPF0363 protein Y 21.2 5E+02 0.017 24.2 13.6 92 49-144 31-124 (312)
216 3rjv_A Putative SEL1 repeat pr 20.6 2.8E+02 0.0097 22.8 7.3 46 46-98 68-117 (212)
217 3dss_A Geranylgeranyl transfer 20.2 5.3E+02 0.018 24.0 11.5 120 48-177 162-302 (331)
No 1
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=1.1e-36 Score=302.14 Aligned_cols=215 Identities=23% Similarity=0.308 Sum_probs=196.7
Q ss_pred ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q psy3481 63 GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKD 142 (340)
Q Consensus 63 ~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~ 142 (340)
++..+.+++|+-+++++|+++|+++++.+++++++||+ +.++|||++|+||+|+|.++.++++. +.+|++|++||+|
T Consensus 12 ~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kak~~k~v~~l~~~~~~~~~~~--~~~~~~~~~~~~~ 88 (394)
T 3txn_A 12 EERIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFL-SSISKAKAAKLVRSLVDMFLDMDAGT--GIEVQLCKDCIEW 88 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGG-GGSCHHHHHHHHHHHHHHHTTSCCCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHH
Confidence 35578899999999999999999999999999999999 89999999999999999999999876 4589999999999
Q ss_pred ccc-hhhhHh--HHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHH
Q psy3481 143 AKN-DRLWFK--TNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLY 219 (340)
Q Consensus 143 ~~~-~rlf~k--~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~ 219 (340)
|++ +|+|+| +|+||+.+|+++++++.+++++.++|.+|++.+ + +++++||+++||++|+.++|+++++.++
T Consensus 89 a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d---d---~~~llev~lle~~~~~~~~n~~k~k~~l 162 (394)
T 3txn_A 89 AKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLD---D---KNLLVEVQLLESKTYHALSNLPKARAAL 162 (394)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS---C---THHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc---c---chhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 987 699999 456999999999999999999999999999876 3 8999999999999999999999999999
Q ss_pred Hhhhhhhhhh-hHHHHHHHHHHHhhheecccCCCCCcccccccchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Q psy3481 220 EQSLHIKSAI-PHPLIMGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALECGGK 298 (340)
Q Consensus 220 ~~~~~i~~si-~~~~~~~vv~~~lIilR~~~p~~~r~FrvPlvP~iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG~YG~ 298 (340)
+.+.++++++ .+|.+...+- -+.|.
T Consensus 163 ~~a~~~~~ai~~~p~i~a~i~------------------------------------------------------~~~Gi 188 (394)
T 3txn_A 163 TSARTTANAIYCPPKVQGALD------------------------------------------------------LQSGI 188 (394)
T ss_dssp HHHHHHHHHSCCCHHHHHHHH------------------------------------------------------HHHHH
T ss_pred HHHHhhhccCCCCHHHHHHHH------------------------------------------------------HHhhH
Confidence 9999999887 5555543322 13699
Q ss_pred hhc-ccccccccchhHHHhhhccCCCCCcchHHHHHHHHHhcC
Q psy3481 299 MHL-REGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340 (340)
Q Consensus 299 rhS-~~~~~~~~~~~F~eaF~~yde~g~~~~~~~LKYl~L~~~ 340 (340)
.|. ..+.+++|.++|+|||++|+++|+|++++|||||+||+|
T Consensus 189 ~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL 231 (394)
T 3txn_A 189 LHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI 231 (394)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 999 899999999999999999999999999999999999975
No 2
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.7e-20 Score=185.29 Aligned_cols=245 Identities=11% Similarity=0.161 Sum_probs=185.9
Q ss_pred hhhhhhccccccccCCHHHHHHHHHhhccccc-ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhH
Q psy3481 31 DLENQYYNSKALKEDDPKAALQSFQKVLDLES-GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYS 109 (340)
Q Consensus 31 ~lEn~y~~ak~~~~~~~~~a~~~~~~v~~~~~-~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~ 109 (340)
+++|+|+.|+++..+|+++|++.+..+..... .+.+.|++++++++++++++.|+++.|.+++. ++... ....|...
T Consensus 16 ~~~~~~~~~~~l~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~-~Lskk-r~qlk~ai 93 (445)
T 4b4t_P 16 ILKEEFPKIDSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLT-LLSKK-HGQLKLSI 93 (445)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHH-HHHTT-TTTSHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHH-hhhhHHHH
Confidence 38999999999999999999998876654322 46689999999999999999999999999775 44444 46788999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhH-----hHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCC
Q psy3481 110 EKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWF-----KTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDD 184 (340)
Q Consensus 110 ~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~-----k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~ 184 (340)
.|.|+.++++++.+++.+.. ....+.+++.+..++|+|+ |...+|++++++.+++..+.+++..||.++.+.+
T Consensus 94 ~~~V~~~~~~l~~~~~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~ 171 (445)
T 4b4t_P 94 QYMIQKVMEYLKSSKSLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSM 171 (445)
T ss_dssp HHHHHHHHHHHHHHCTTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHhcCCchhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999988876643 4556666666677788877 4679999999999999999999999999988654
Q ss_pred CccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhh-HHHHHHHHHHHhhheecccCCCCCcccccccch
Q psy3481 185 GEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIP-HPLIMGVIRGLFVIEAHEQNMEGLRFKVPLVPF 263 (340)
Q Consensus 185 ~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~-~~~~~~vv~~~lIilR~~~p~~~r~FrvPlvP~ 263 (340)
+ +...+|+++.++++|...+|..++..++..+.....+.. .+-+-
T Consensus 172 ---~---~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk---------------------------- 217 (445)
T 4b4t_P 172 ---E---MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK---------------------------- 217 (445)
T ss_dssp ---C---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH----------------------------
T ss_pred ---c---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH----------------------------
Confidence 3 789999999999999999999999999888755333221 00000
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHhhhccCCCCCcch-HHHHHHHHHhc
Q psy3481 264 VPGLSIFFNIELMANLNVLTWLRFIIWMALECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR-TTCLKYLVLAN 339 (340)
Q Consensus 264 iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG~YG~rhS~~~~~~~~~~~F~eaF~~yde~g~~~~-~~~LKYl~L~~ 339 (340)
+.++ -+.|+.|...+.+..++.+|+|+|++|+..|+|.+ ..+|+|+|+|.
T Consensus 218 -------~~~~-------------------~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 218 -------LEYY-------------------NLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp -------HHHH-------------------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred -------HHHH-------------------HHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 0000 13588899999999999999999999999998765 56788888874
No 3
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=9.8e-18 Score=158.86 Aligned_cols=240 Identities=17% Similarity=0.258 Sum_probs=195.9
Q ss_pred cccc-cccCCHHHHHHHHHhhcccccc------------cchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhcc
Q psy3481 38 NSKA-LKEDDPKAALQSFQKVLDLESG------------ERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAV 104 (340)
Q Consensus 38 ~ak~-~~~~~~~~a~~~~~~v~~~~~~------------~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v 104 (340)
.|+. .+..+.++|++.|+++++.... ...+|.++|+.+++++|+++|+++++.++|++++++. +.+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~-~~~ 88 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM-MQF 88 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH-HTS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHc
Confidence 3444 4567899999999999976531 2347899999999999999999999999999999988 889
Q ss_pred chhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc---cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcC
Q psy3481 105 TRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA---KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 181 (340)
Q Consensus 105 ~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~---~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~k 181 (340)
+++++++.++++++.+...++.. ++..+.+.++++|+ ++..++.++..+|++++++++++..+.+.+.+++..++
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSL--DDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCH--HHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 99999999999999998776543 33566666666665 45788899999999999999999999999999999998
Q ss_pred CCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhhheecccCCCCCccccccc
Q psy3481 182 TDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRGLFVIEAHEQNMEGLRFKVPLV 261 (340)
Q Consensus 182 tp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~~~vv~~~lIilR~~~p~~~r~FrvPlv 261 (340)
..+ + ....++++...+++|..++|..++...+..+..+..++.++.....
T Consensus 167 ~~~---~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~------------------------ 216 (434)
T 4b4t_Q 167 KLD---D---KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA------------------------ 216 (434)
T ss_dssp TSS---C---STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH------------------------
T ss_pred hcc---c---chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH------------------------
Confidence 766 2 5678899999999999999999999999999887765542211000
Q ss_pred chhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHhhhccCCCCC----cchHHHHHHHHH
Q psy3481 262 PFVPGLSIFFNIELMANLNVLTWLRFIIWMALECGGKMHLREGEFEKAHTDFFEAFKNYDESGS----PRRTTCLKYLVL 337 (340)
Q Consensus 262 P~iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG~YG~rhS~~~~~~~~~~~F~eaF~~yde~g~----~~~~~~LKYl~L 337 (340)
.++ ...|..|...+.+..+..+|.++|+.|++.++ +.+..+++|+++
T Consensus 217 --------------------------~~~---~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 267 (434)
T 4b4t_Q 217 --------------------------ELD---LMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLL 267 (434)
T ss_dssp --------------------------HHH---HHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred --------------------------HHH---HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 000 12577788899999999999999999988765 468899999999
Q ss_pred hc
Q psy3481 338 AN 339 (340)
Q Consensus 338 ~~ 339 (340)
|.
T Consensus 268 ~~ 269 (434)
T 4b4t_Q 268 SK 269 (434)
T ss_dssp HH
T ss_pred HH
Confidence 85
No 4
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.35 E-value=5.4e-13 Score=132.43 Aligned_cols=238 Identities=13% Similarity=0.069 Sum_probs=147.4
Q ss_pred hhhhhccccccccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhh---------
Q psy3481 32 LENQYYNSKALKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKS--------- 102 (340)
Q Consensus 32 lEn~y~~ak~~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~--------- 102 (340)
.|+.|++++..+..|.+-|...|.--...-+++..+|.++.+.+++|.. .|..+|+++..-+..
T Consensus 9 ~e~~y~d~~~~k~P~~~la~~~f~l~~~~~~~~~~~~~~~~l~~~ik~~-------~ma~~y~~l~~~l~~~~~~~~~~~ 81 (429)
T 4b4t_R 9 QEVEYVDPTVNRVPNYEVSEKAFLLTQSKVSIEQRKEAAEFVLAKIKEE-------EMAPYYKYLCEEYLVNNGQSDLEH 81 (429)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHT-------CCHHHHHHHHHHSCCCCSCCSSCS
T ss_pred hhccccCcccccCCChHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHh-------CCHHHHHHHHHHHhhcccchhhhh
Confidence 3444554444444454545444432211111355789999998888764 355667777654421
Q ss_pred ---ccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 103 ---AVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 103 ---~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
.+++++..+....+++.+.. .|.+.++++.+...++.+...+++.|.+++.+||..+++.|+++.+.+.+.+++..
T Consensus 82 ~~~~~~~~~~~~~d~~~~~~~~~-~n~~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~ 160 (429)
T 4b4t_R 82 DEKSDSLNEWIKFDQELYNELCK-KNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSK 160 (429)
T ss_dssp HHHHHHHHHTTTTCCSSCTTTTC-CSSCCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHH
T ss_pred hhhhhhhhhcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12223333333444554432 45555677777777776666678999999999999999999999999999999999
Q ss_pred cCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhhheecccCCCCCccccc
Q psy3481 180 CQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRGLFVIEAHEQNMEGLRFKVP 259 (340)
Q Consensus 180 ~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~~~vv~~~lIilR~~~p~~~r~FrvP 259 (340)
|.++. ..++++...|+++-..+|...+......+..........-.
T Consensus 161 ~~~~~---------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~------------------------- 206 (429)
T 4b4t_R 161 AISTG---------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWER------------------------- 206 (429)
T ss_dssp HTCCC---------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHH-------------------------
T ss_pred cCChH---------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHH-------------------------
Confidence 87553 46788888888888888888887777776543321110000
Q ss_pred ccchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHhhhccCCCCCcchHHHHHHHHHhc
Q psy3481 260 LVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 339 (340)
Q Consensus 260 lvP~iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG~YG~rhS~~~~~~~~~~~F~eaF~~yde~g~~~~~~~LKYl~L~~ 339 (340)
..++- -+.|..|-..+.+..+...|+|+|.+|++.+.+.+.++++|.+||.
T Consensus 207 ------------------------~~~lk-----~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~a 257 (429)
T 4b4t_R 207 ------------------------RNRYK-----TYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTG 257 (429)
T ss_dssp ------------------------HHHHH-----HHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHH-----HHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHH
Confidence 00000 1257778888899999999999999999999999999999999996
Q ss_pred C
Q psy3481 340 M 340 (340)
Q Consensus 340 ~ 340 (340)
|
T Consensus 258 l 258 (429)
T 4b4t_R 258 L 258 (429)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.69 E-value=8.7e-09 Score=100.18 Aligned_cols=126 Identities=10% Similarity=0.038 Sum_probs=86.2
Q ss_pred HHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHH
Q psy3481 155 KLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLI 234 (340)
Q Consensus 155 kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~ 234 (340)
--.|+.++|+|++.+|++++++|+ .+||+. +.++..+...-+ ..... .+.....+..... ..++..++.
T Consensus 296 ~~sR~~~~~a~dg~lP~~~~~~~~-~~~P~~------a~~~~~~~~~~~-~~~~~--~~~~~~~~~~l~~-~~~~~~~~~ 364 (445)
T 3l1l_A 296 LAGQTAKAAADDGLFPPIFARVNK-AGTPVA------GLIIVGILMTIF-QLSSI--SPNATKEFGLVSS-VSVIFTLVP 364 (445)
T ss_dssp HHHHHHHHHHHTTSSCGGGGCCCT-TCCCHH------HHHHHHHHHHHH-HHSTT--SHHHHCCCHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcHHHHhcCC-CCCCHH------HHHHHHHHHHHH-HHHHH--cccHHHHHHHHHH-HHHHHHHHH
Confidence 356799999999999999999996 589984 333333323211 11100 0000001111111 133455566
Q ss_pred HHHHHHHhhheecccCCCCCcccccccchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy3481 235 MGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALEC 295 (340)
Q Consensus 235 ~~vv~~~lIilR~~~p~~~r~FrvPlvP~iP~l~il~~l~L~~~L~~~tw~~~~vW~~iG~ 295 (340)
+.+++.+++++|+++| .+ |+|..|++|+++++.|++++...++.++...++|+++|+
T Consensus 365 y~~~~~~~~~~r~~~~-~~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 421 (445)
T 3l1l_A 365 YLYTCAALLLLGHGHF-GK---ARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVIT 421 (445)
T ss_dssp HHHHHHHHHHHHSSSS-GG---GCTTTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCc-cc---ccchhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 7777778888888877 33 679999999999999999999999999999999999996
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.22 E-value=1.1e-06 Score=87.05 Aligned_cols=112 Identities=8% Similarity=-0.027 Sum_probs=69.0
Q ss_pred HHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhc-hHHHHHHHHhhhhhhhhhhHHHH
Q psy3481 156 LGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKN-NKKLKKLYEQSLHIKSAIPHPLI 234 (340)
Q Consensus 156 L~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n-~~~l~~~~~~~~~i~~si~~~~~ 234 (340)
-.|+.++|+|++.+|++++++|+ .++|..+ .++. +..+.+ .+..+.+ .......|..... .+++..++.
T Consensus 312 ~sR~l~a~ardg~lP~~~~~~~~-~~~P~~a------i~~~-~~~~~l-~~~~~~~~~~~~~~~f~~l~~-~~~~~~~~~ 381 (511)
T 4djk_A 312 PSRGMYVTAQKNLLPAAFAKMNK-NGVPVTL------VISQ-LVITSI-ALIILTNTGGGNNMSFLIALA-LTVVIYLCA 381 (511)
T ss_dssp HHHHTCHHHHGGGCSSSCCCCCS-SSCCCHH------HHHH-HHHHHH-HHHHHHSSSSHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHccCCcccHHHHhcCC-CCCcHHH------HHHH-HHHHHH-HHHHhccccchHHHHHHHHHH-HHHHHHHHH
Confidence 45799999999999999999996 6999843 3332 111111 1111111 0001112222222 233455556
Q ss_pred HHHHHHHhhheecccCCCCCcccccccc----hhhHHHHHHHHHHHh
Q psy3481 235 MGVIRGLFVIEAHEQNMEGLRFKVPLVP----FVPGLSIFFNIELMA 277 (340)
Q Consensus 235 ~~vv~~~lIilR~~~p~~~r~FrvPlvP----~iP~l~il~~l~L~~ 277 (340)
+.+++++++++|+++|+.+|+||+|+.| ++++++++.+++.+.
T Consensus 382 y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (511)
T 4djk_A 382 YFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFI 428 (511)
T ss_dssp HHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHH
Confidence 6777777888888888889999999755 466677777776665
No 7
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.72 E-value=0.0075 Score=52.71 Aligned_cols=176 Identities=13% Similarity=0.062 Sum_probs=113.8
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
...+.++|++.|++.++.. ++..++.-.++..++.++...|++++..+.+++.+...+..-...........+-.....
T Consensus 17 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 95 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 95 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 4567899999999999876 555667778999999999999999999999999988764322222334444444444444
Q ss_pred CCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccc--------------------hHHHHHHHHHHHhhcCC
Q psy3481 123 SKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDRED--------------------FNKLSRILKQLHQSCQT 182 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~--------------------~~~lp~~l~~lH~~~kt 182 (340)
..+.+...+.++.+++......+......+...++.+++.+++ +...-..+.+....++.
T Consensus 96 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~ 175 (338)
T 3ro2_A 96 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4455544455555555544444455556677889999999999 88887777765544332
Q ss_pred CCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhh
Q psy3481 183 DDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHI 225 (340)
Q Consensus 183 p~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i 225 (340)
.. + ......+...-..++...++.......+..+..+
T Consensus 176 ~~---~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 176 LG---D---RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HT---C---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cC---C---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 11 1 1111222222234555667777766666666543
No 8
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.62 E-value=0.011 Score=53.90 Aligned_cols=177 Identities=12% Similarity=0.057 Sum_probs=114.1
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
...+.++|++.|+++++.. ++..+....++..+..+++..|++++....+++.+......-...........+-.....
T Consensus 21 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 99 (406)
T 3sf4_A 21 KSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 99 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 4568899999999999886 444566678899999999999999999999999988763322222333344444444444
Q ss_pred CCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccc--------------------hHHHHHHHHHHHhhcCC
Q psy3481 123 SKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDRED--------------------FNKLSRILKQLHQSCQT 182 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~--------------------~~~lp~~l~~lH~~~kt 182 (340)
..+.+...+.++.+++......+......+...++.+++.+++ +..+-..+.+....++.
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 179 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444334455556677889999999999 88888888776655432
Q ss_pred CCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhh
Q psy3481 183 DDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIK 226 (340)
Q Consensus 183 p~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~ 226 (340)
.. + ......+...-..++..+++.......+..+..+.
T Consensus 180 ~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 180 LG---D---RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp TT---C---HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred cc---C---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 22 1 11222233322345666777777666666665443
No 9
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.55 E-value=0.0083 Score=52.42 Aligned_cols=134 Identities=14% Similarity=0.066 Sum_probs=68.3
Q ss_pred cCCHHHHHHHHHhhccccc-ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 44 EDDPKAALQSFQKVLDLES-GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~-~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
..++++|++.|++.++... .........++..+..++..+|++++..+.+++.+......-...........+-.....
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 4567777777777664321 223455666777777777777777777777777666544332222222222222222222
Q ss_pred CCC--------------------hhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHH
Q psy3481 123 SKN--------------------MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLH 177 (340)
Q Consensus 123 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH 177 (340)
..+ .+...+.++.+++..+..++......+...++.+++.++++..+...+.+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 122 3333334444444444444444444445555555555555555555555444
No 10
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.53 E-value=0.015 Score=53.63 Aligned_cols=177 Identities=15% Similarity=0.069 Sum_probs=116.1
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
...+.++|++.|++.++.. ++.....-.++..+..++..+|++++....|++.+...+..-...........+-.....
T Consensus 60 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 138 (411)
T 4a1s_A 60 NAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV 138 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 4567899999999999986 445566677899999999999999999999999988764332233334444445454444
Q ss_pred CCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccc-----------------hHHHHHHHHHHHhhcCCCCC
Q psy3481 123 SKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDRED-----------------FNKLSRILKQLHQSCQTDDG 185 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~-----------------~~~lp~~l~~lH~~~ktp~~ 185 (340)
..+.+...+.++.+++..+...+......+...++.+++.+++ +..+...+.+.....+...
T Consensus 139 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~- 217 (411)
T 4a1s_A 139 MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG- 217 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC-
Confidence 4455554455555555544444455666777889999999999 8888888777655443211
Q ss_pred ccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhh
Q psy3481 186 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIK 226 (340)
Q Consensus 186 a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~ 226 (340)
+ ......+...-..++...++.......+..+..+.
T Consensus 218 --~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 218 --D---RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp --C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --C---HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1 11122222222345666777777666666665443
No 11
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.50 E-value=2.9e-05 Score=75.33 Aligned_cols=101 Identities=9% Similarity=0.009 Sum_probs=64.6
Q ss_pred HHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhhhhhhHHHHH
Q psy3481 156 LGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIM 235 (340)
Q Consensus 156 L~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~~si~~~~~~ 235 (340)
-.|+.++|+|++.+|++++++| .++|.. +.++..+.++-+-. ..+... .....++..++.+
T Consensus 295 ~sR~l~a~a~dg~lP~~f~~~~--~~~P~~------a~~~~~~~~~~~~~---~~~~~~--------l~~~~~~~~~~~~ 355 (444)
T 3gia_A 295 GANVAYSLAKDGELPEFFERKV--WFKSTE------GLYITSALGVLFAL---LFNMEG--------VASITSAVFMVIY 355 (444)
T ss_dssp THHHHHHHHHHSSCCSSCCTTS--CCSCTH------HHHHHHHHHHHHHH---HSCHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHhCCC--CCCCcH------HHHHHHHHHHHHHH---HcCHHH--------HHHHHHHHHHHHH
Confidence 3568999999999999999887 356773 44444443331111 111111 1112445556667
Q ss_pred HHHHHHhhheecccCCCCCcccccccchhhHHHHHHHHHHHhcCCHHHH
Q psy3481 236 GVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTW 284 (340)
Q Consensus 236 ~vv~~~lIilR~~~p~~~r~FrvPlvP~iP~l~il~~l~L~~~L~~~tw 284 (340)
.+++++++.+|+++| ..|++|+++++.|++++..+....|
T Consensus 356 ~~~~~~~~~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (444)
T 3gia_A 356 LFVILSHYILIDEVG---------GRKEIVIFSFIVVLGVFLLLLYYQW 395 (444)
T ss_dssp HHHHHHHHHTHHHHC---------CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCC---------CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777653 3469999999999988877655433
No 12
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.46 E-value=0.0082 Score=46.66 Aligned_cols=138 Identities=13% Similarity=0.086 Sum_probs=92.0
Q ss_pred cCCHHHHHHHHHhhcccccc-cchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 44 EDDPKAALQSFQKVLDLESG-ERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~-~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
..++++|++.|++.++.... ....+.-.++-.+..++..+|++++..+.+++.+......-...........+-.....
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (164)
T 3ro3_A 22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 101 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 45789999999999876421 22344456888999999999999999999999988774321222222333333333333
Q ss_pred CCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcC
Q psy3481 123 SKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 181 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~k 181 (340)
..+.+...+.++.+++..+...+......+-..++.+++.++++..+...+.+...-.+
T Consensus 102 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 102 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 34444444445555544444444444455678899999999999999988888776654
No 13
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.43 E-value=0.015 Score=53.66 Aligned_cols=175 Identities=14% Similarity=0.062 Sum_probs=114.4
Q ss_pred HHHHHHHHHhhccccc-ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCC
Q psy3481 47 PKAALQSFQKVLDLES-GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKN 125 (340)
Q Consensus 47 ~~~a~~~~~~v~~~~~-~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~ 125 (340)
.++|++.|++.++... .......-.++..+..++..+|++++...++++.+......-...........+-.......+
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 5788888888776432 122345667888999999999999999999999988774322222333344445554444555
Q ss_pred hhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHH
Q psy3481 126 MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQM 205 (340)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~ 205 (340)
.+...+.++.+++......+...-..+-..++.++..++++..+-..+.+.....+... + ......++..-..+
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~la~~ 352 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG---D---RIGEARACWSLGNA 352 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---C---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---C---hHHHHHHHHHHHHH
Confidence 55444555555554444444444456778899999999999999999988776654221 1 11222333333456
Q ss_pred HHhhhchHHHHHHHHhhhhhhh
Q psy3481 206 YTAQKNNKKLKKLYEQSLHIKS 227 (340)
Q Consensus 206 ~~~l~n~~~l~~~~~~~~~i~~ 227 (340)
|..+++.......+..+..+.-
T Consensus 353 ~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 353 HSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHhccHHHHHHHHHHHHHHHh
Confidence 7778888888888888766553
No 14
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.33 E-value=0.02 Score=52.09 Aligned_cols=56 Identities=20% Similarity=0.033 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHhhccccc-ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 45 DDPKAALQSFQKVLDLES-GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~-~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
.+.++|++.|++.+.... .........++..+..++..+|++++....+++.+...
T Consensus 61 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 117 (406)
T 3sf4_A 61 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS 117 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 445555555555443211 11223344455555555555555555555555544443
No 15
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.30 E-value=0.034 Score=51.58 Aligned_cols=178 Identities=11% Similarity=0.001 Sum_probs=122.3
Q ss_pred ccCCHHHHHHHHHhhcccccc-cchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccc-hhhHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESG-ERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVT-RNYSEKSINSILDYI 120 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~-~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~-k~~~~k~i~~ild~~ 120 (340)
...+.++|++.|++.+..-.. ......-.++..+..++..+|++++.++++++.+...+..-. ........+.+=...
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 457889999999999875321 223456688999999999999999999999999998743221 233334444444444
Q ss_pred hcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHH
Q psy3481 121 STSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYA 200 (340)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~a 200 (340)
....+.+...+.++.+++..+..++......+-..|+.+++.++++..+-..+.+...-++... + ......+..
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~ 268 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN---I---LPSLPQAYF 268 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---C---GGGHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc---c---chhHHHHHH
Confidence 4455555555556666665555555677777788899999999999999999988777544322 1 011223333
Q ss_pred HHHHHHHhhhchHHHHHHHHhhhhhh
Q psy3481 201 LEIQMYTAQKNNKKLKKLYEQSLHIK 226 (340)
Q Consensus 201 leI~~~~~l~n~~~l~~~~~~~~~i~ 226 (340)
.--.++..+++..+....+..+..+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 33446777888888888888876654
No 16
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.16 E-value=0.027 Score=48.13 Aligned_cols=176 Identities=14% Similarity=0.095 Sum_probs=105.6
Q ss_pred CHHHHHHHHHhhccccc---ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhcc--chhhHHHHHHHHHHHh
Q psy3481 46 DPKAALQSFQKVLDLES---GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAV--TRNYSEKSINSILDYI 120 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~---~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v--~k~~~~k~i~~ild~~ 120 (340)
++++|++.|++.++.-. +........++..+..+++.+|++++....|++.+...+... .......+...+-...
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY 95 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 34445555555443211 112346678899999999999999999999999988763221 1123344455555555
Q ss_pred hcCCChhHHHHHHHHHHHHHhhc--cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHH
Q psy3481 121 STSKNMELLQDFYETTLEALKDA--KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEI 198 (340)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~--~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV 198 (340)
....+.+...+.++.+++..+.. .+......+...++.+++.++++..+...+.+....++.-.....+ ....+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~ 171 (283)
T 3edt_B 96 GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP----NVAKT 171 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH----HHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH----HHHHH
Confidence 44545444444444444443322 1235556677889999999999999999998887765322111011 12223
Q ss_pred HHHHHHHHHhhhchHHHHHHHHhhhhh
Q psy3481 199 YALEIQMYTAQKNNKKLKKLYEQSLHI 225 (340)
Q Consensus 199 ~aleI~~~~~l~n~~~l~~~~~~~~~i 225 (340)
...-..++...++.......+..+..+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 332234566677777777777666543
No 17
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.15 E-value=0.055 Score=47.16 Aligned_cols=178 Identities=14% Similarity=0.131 Sum_probs=114.7
Q ss_pred cCCHHHHHHHHHhhccccc---ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhcc--chhhHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLES---GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAV--TRNYSEKSINSILD 118 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~---~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v--~k~~~~k~i~~ild 118 (340)
..+.++|++.|++.++.-. +........++..+..++..+|++++....|++.+...+... ...........+-.
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4678999999999987531 113456778899999999999999999999999988763321 11233444455555
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhc--cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchh
Q psy3481 119 YISTSKNMELLQDFYETTLEALKDA--KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLL 196 (340)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~lll 196 (340)
......+.+...+.++.+++..+.. .+......+-..++.+++.++++..+-..+.+....++....... ....
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----~~~~ 195 (311)
T 3nf1_A 120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD----PNVA 195 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC----HHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC----HHHH
Confidence 5544545444444444444433222 333555667788999999999999999999998887543211101 1222
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHhhhhh
Q psy3481 197 EIYALEIQMYTAQKNNKKLKKLYEQSLHI 225 (340)
Q Consensus 197 eV~aleI~~~~~l~n~~~l~~~~~~~~~i 225 (340)
.+...-..++...++.......+..+..+
T Consensus 196 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 196 KTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33333344566677777777777666543
No 18
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.14 E-value=0.05 Score=48.95 Aligned_cols=178 Identities=12% Similarity=0.088 Sum_probs=117.2
Q ss_pred cccCCHHHHHHHHHhhcccccccchhhH--HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHH
Q psy3481 42 LKEDDPKAALQSFQKVLDLESGERGEWG--FKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDY 119 (340)
Q Consensus 42 ~~~~~~~~a~~~~~~v~~~~~~~~~~w~--fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~ 119 (340)
+...+.++|++.++++++.. ....+.. ...+..++.++..+++++++++.|++.+....+.-.......+.++|-..
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 164 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 45678899999999999865 2222222 22344577888999999999999999998542222222233455666655
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhc-cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHH
Q psy3481 120 ISTSKNMELLQDFYETTLEALKDA-KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEI 198 (340)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV 198 (340)
.....+.+...+.|+.+++.++.. .+....+.+-..++.+++.++++..+...+.+...-.+... + ...+..+
T Consensus 165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~---~---~~~~~~~ 238 (293)
T 3u3w_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN---S---MALIGQL 238 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---B---CTTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC---c---HHHHHHH
Confidence 555556665556677777666555 45677778889999999999999999999988776654322 1 1122333
Q ss_pred HHHHHHHHHhhhc-hHHHHHHHHhhhhhh
Q psy3481 199 YALEIQMYTAQKN-NKKLKKLYEQSLHIK 226 (340)
Q Consensus 199 ~aleI~~~~~l~n-~~~l~~~~~~~~~i~ 226 (340)
+..--.+|..+++ ..+....|..+..++
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3322335666774 367777777765544
No 19
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.10 E-value=0.051 Score=50.53 Aligned_cols=177 Identities=11% Similarity=-0.001 Sum_probs=120.6
Q ss_pred ccCCHHHHHHHHHhhcccccc-cchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccc-hhhHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESG-ERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVT-RNYSEKSINSILDYI 120 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~-~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~-k~~~~k~i~~ild~~ 120 (340)
...+.++|++.|++.+..-.. ......-.++..+..++..+|++++.++++++.+......-. ......+.+.+=...
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 467889999999999875421 223566678899999999999999999999999987743222 223344444554444
Q ss_pred hcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHH
Q psy3481 121 STSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYA 200 (340)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~a 200 (340)
....+.+...+.++.+++..+..++......+-..|+.+++.++++..+-..+.+...-++... ++ ....+..
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~---~~----~~~~~~~ 265 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV---PD----LLPKVLF 265 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC---GG----GHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC---Ch----hHHHHHH
Confidence 4455555555556666655555555666677788999999999999999999988877543211 11 1122333
Q ss_pred HHHHHHHhhhchHHHHHHHHhhhhhh
Q psy3481 201 LEIQMYTAQKNNKKLKKLYEQSLHIK 226 (340)
Q Consensus 201 leI~~~~~l~n~~~l~~~~~~~~~i~ 226 (340)
.--.++..+++..+....+..+..+.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 22346777888888888888776554
No 20
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.08 E-value=0.089 Score=47.53 Aligned_cols=178 Identities=12% Similarity=0.002 Sum_probs=108.5
Q ss_pred cCCHHHHHHHHHhhcccccc-cchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 44 EDDPKAALQSFQKVLDLESG-ERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~-~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
..+.++|++.|++.++.... ......-.++.++..++.++|++++.+.+|++.+......-....+....+++-..+..
T Consensus 50 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 129 (292)
T 1qqe_A 50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN 129 (292)
T ss_dssp TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45678899999988876421 11233467889999999999999999999999988663221222334555555555554
Q ss_pred C-CChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHH
Q psy3481 123 S-KNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYAL 201 (340)
Q Consensus 123 ~-~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~al 201 (340)
. .+.+.....|+.+++......+......+-.+++.++..++++..+-..+.+.......... . .-..-+.+.-
T Consensus 130 ~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~---~~~~~~~~~~ 204 (292)
T 1qqe_A 130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL--S---QWSLKDYFLK 204 (292)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT--T---GGGHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc--c---cHHHHHHHHH
Confidence 3 44444434444444433222222333456688999999999999999999998876532210 0 0001111111
Q ss_pred HHHHHHhhhchHHHHHHHHhhhhhh
Q psy3481 202 EIQMYTAQKNNKKLKKLYEQSLHIK 226 (340)
Q Consensus 202 eI~~~~~l~n~~~l~~~~~~~~~i~ 226 (340)
-..++..+++.......|..+..+.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1224556677777666776665433
No 21
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.87 E-value=0.096 Score=47.04 Aligned_cols=178 Identities=11% Similarity=0.046 Sum_probs=113.0
Q ss_pred ccCCHHHHHHHHHhhcccccc-cchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhh
Q psy3481 43 KEDDPKAALQSFQKVLDLESG-ERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIS 121 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~-~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~ 121 (340)
...+.++|++.+++.++.... ....-.......++.++..+|++++.++.|++.+..............+.+.+-..+.
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 456778999999998876522 1111222334557788899999999999999988755332222223445555555555
Q ss_pred cCCChhHHHHHHHHHHHHHhhccc-hhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHH
Q psy3481 122 TSKNMELLQDFYETTLEALKDAKN-DRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYA 200 (340)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~-~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~a 200 (340)
...+.+...+.|+.+++..+...+ ..+...+...++.+++.++++..+...+.+...-.+... + ...+..++.
T Consensus 167 ~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~---~---~~~~~~~~~ 240 (293)
T 2qfc_A 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN---S---MALIGQLYY 240 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---B---CSSHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC---c---HHHHHHHHH
Confidence 555555555566666655454433 344446778899999999999999999988776653222 1 222333433
Q ss_pred HHHHHHHhhhchHHH-HHHHHhhhhhh
Q psy3481 201 LEIQMYTAQKNNKKL-KKLYEQSLHIK 226 (340)
Q Consensus 201 leI~~~~~l~n~~~l-~~~~~~~~~i~ 226 (340)
.--.+|..+++..+. ...+..+..+.
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 333467777877776 66666665444
No 22
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.84 E-value=0.074 Score=48.45 Aligned_cols=173 Identities=9% Similarity=0.069 Sum_probs=108.1
Q ss_pred cCCHHHHHHHHHhhcccccc-cchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 44 EDDPKAALQSFQKVLDLESG-ERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~-~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
..+.++|++.|++.++.... ......-+++.++..++.++|++++.+++|++.+......=.........+++-..+..
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 35778888888888875421 22234467888999999999999999999999988763221222345556666665555
Q ss_pred CCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHH
Q psy3481 123 SKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALE 202 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~ale 202 (340)
.+.+...+.|+.+++......+.+.-..+-.+++.++..++++..+-..+.+.......-.. . ..........
T Consensus 129 -g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~----~~~~~~~~~~ 201 (307)
T 2ifu_A 129 -LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN--Y----PTCYKKCIAQ 201 (307)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--H----HHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--h----hHHHHHHHHH
Confidence 44444444555555443333333444567788999999999999999998887765432110 0 0111122222
Q ss_pred HHHHHhhhchHHHHHHHHhhh
Q psy3481 203 IQMYTAQKNNKKLKKLYEQSL 223 (340)
Q Consensus 203 I~~~~~l~n~~~l~~~~~~~~ 223 (340)
...+..+++.......|..+.
T Consensus 202 g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 234445567777666666654
No 23
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.75 E-value=0.15 Score=43.43 Aligned_cols=136 Identities=17% Similarity=0.220 Sum_probs=93.8
Q ss_pred cCCHHHHHHHHHhhccccc---ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccch--hhHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLES---GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTR--NYSEKSINSILD 118 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~---~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k--~~~~k~i~~ild 118 (340)
..+.++|++.|++.++... +........++..+..++..+|++++..++|++.+...+..... .........+-.
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 135 (283)
T 3edt_B 56 QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL 135 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4577999999999987531 12345777899999999999999999999999999876332221 233444455555
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhc--cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 119 YISTSKNMELLQDFYETTLEALKDA--KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
......+.+...+.++.+++..+.. .+......+-..|+.+++.++++..+-..+.+....
T Consensus 136 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5545555554444455555443322 223445566788999999999999999998887765
No 24
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.75 E-value=0.13 Score=39.67 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccch
Q psy3481 67 EWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKND 146 (340)
Q Consensus 67 ~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (340)
...-.++..+..+++..|++++....+++.+......-.......+...+-.......+.+...+.++.+++..+...+.
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 45567888999999999999999999999988774322222222334444444434445554445555555554444444
Q ss_pred hhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhh
Q psy3481 147 RLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLH 224 (340)
Q Consensus 147 rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~ 224 (340)
.....+...++.+++.++++...-..+.+.....++.. + ......+...-..++..+++.......+..+..
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK---D---RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc---c---hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45566778899999999999999999988876654322 1 111222222223455566666666666655543
No 25
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.73 E-value=0.26 Score=42.96 Aligned_cols=145 Identities=12% Similarity=0.151 Sum_probs=89.9
Q ss_pred hhhhhcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHH
Q psy3481 32 LENQYYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSE 110 (340)
Q Consensus 32 lEn~y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~ 110 (340)
.+..|..|..+ ...+.++|++.|+++++.. + ...+.-.++..+..+++++|++++....|++++..- +.-+. ..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-p~~~~--~~ 89 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-R-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-QIDPR--VP 89 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-S-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTT--HH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-C-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-CCCch--hH
Confidence 45556666654 4567899999999999976 2 245778899999999999999999999999998754 21111 11
Q ss_pred HHHHHHHH-HhhcCC----ChhHHHHHHHHHHHHHhhccch-hhh-------------HhHHhHHHHhhhcccchHHHHH
Q psy3481 111 KSINSILD-YISTSK----NMELLQDFYETTLEALKDAKND-RLW-------------FKTNTKLGKLYFDREDFNKLSR 171 (340)
Q Consensus 111 k~i~~ild-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-rlf-------------~k~n~kL~~l~~~m~~~~~lp~ 171 (340)
.....+-. ++...+ +.....+-.+...++++...+. ..+ ......++.+++.++++..+-.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 11111111 111000 0111222233333333322211 111 1112678999999999999999
Q ss_pred HHHHHHhhcC
Q psy3481 172 ILKQLHQSCQ 181 (340)
Q Consensus 172 ~l~~lH~~~k 181 (340)
.+.++.....
T Consensus 170 ~~~~~l~~~p 179 (261)
T 3qky_A 170 TYEAVFDAYP 179 (261)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHHCC
Confidence 9999988753
No 26
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.65 E-value=0.23 Score=45.96 Aligned_cols=171 Identities=12% Similarity=0.112 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHhhccccc-ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC
Q psy3481 45 DDPKAALQSFQKVLDLES-GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS 123 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~-~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~ 123 (340)
.+.++|++.|++.++... .......-.++..++.++.++|+++++.+++++.+...+..-.+.....+...+-......
T Consensus 198 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (383)
T 3ulq_A 198 KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKL 277 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHC
Confidence 578999999999987642 1234556678899999999999999999999999987643333233355556665555555
Q ss_pred CChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHH
Q psy3481 124 KNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEI 203 (340)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI 203 (340)
.+.+...+.++.+++..+..++....... ..|+.++...++...+...+.-....- . .....++...-.
T Consensus 278 g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~al~~~~~~~---~-------~~~~~~~~~~la 346 (383)
T 3ulq_A 278 GKIDKAHEYHSKGMAYSQKAGDVIYLSEF-EFLKSLYLSGPDEEAIQGFFDFLESKM---L-------YADLEDFAIDVA 346 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHH-HHHHHHHTSSCCHHHHHHHHHHHHHTT---C-------HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHCc---C-------HHHHHHHHHHHH
Confidence 55555545555555544333333333332 348889999998533333333332221 1 111222333334
Q ss_pred HHHHhhhchHHHHHHHHhhhhhh
Q psy3481 204 QMYTAQKNNKKLKKLYEQSLHIK 226 (340)
Q Consensus 204 ~~~~~l~n~~~l~~~~~~~~~i~ 226 (340)
.+|...+|..+....|..+..+.
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHH
Confidence 56777888888777777765544
No 27
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.65 E-value=0.17 Score=44.01 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=92.9
Q ss_pred cCCHHHHHHHHHhhccccc---ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccc--hhhHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLES---GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVT--RNYSEKSINSILD 118 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~---~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~--k~~~~k~i~~ild 118 (340)
..+.++|++.|++.+..-. +........++..++.++..+|++++....+++.+...+...+ ..........+-.
T Consensus 82 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 82 QNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 4577899999999887531 1223566778899999999999999999999999887532211 1223334444444
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhc--cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 119 YISTSKNMELLQDFYETTLEALKDA--KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
......+.+...+.++.+++..+.. .+......+...++.+++.++++..+-..+.+....
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4444555554445555555544333 224555667788999999999999999988887764
No 28
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.63 E-value=0.22 Score=40.82 Aligned_cols=176 Identities=10% Similarity=0.035 Sum_probs=109.2
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
...+.++|.+.++.+.... .....++..+..++..+|++++.+..+++.+...+..-...........+-.....
T Consensus 4 ~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHP-----ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp ---CHHHHHHHHHHHHTST-----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCCh-----HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4456778888555543321 24567888999999999999999999999998774322223333344444444434
Q ss_pred CCChhHHHHHHHHHHHHHhhccch-hhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHH
Q psy3481 123 SKNMELLQDFYETTLEALKDAKND-RLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYAL 201 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~-rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~al 201 (340)
..+.+...+.++.+++..+...++ .....+...++.+++.++++......+.+.....+... + ......+...
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~ 152 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD---D---QVAIACAFRG 152 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc---c---hHHHHHHHHH
Confidence 445554445555555555444422 25556778899999999999999999988776654332 1 1111122222
Q ss_pred HHHHHHhhhchHHHHHHHHhhhhhhhhh
Q psy3481 202 EIQMYTAQKNNKKLKKLYEQSLHIKSAI 229 (340)
Q Consensus 202 eI~~~~~l~n~~~l~~~~~~~~~i~~si 229 (340)
--.++...++.......+..+..+.-..
T Consensus 153 la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 153 LGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 2345667788888777777776655433
No 29
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.44 E-value=0.48 Score=43.86 Aligned_cols=148 Identities=8% Similarity=0.009 Sum_probs=90.2
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccc-hhhhH
Q psy3481 72 ALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKN-DRLWF 150 (340)
Q Consensus 72 a~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~-~rlf~ 150 (340)
..-.....++.+|++++.++.|++.+...+..-.....+.....+=.......+.+...+.++.+++..+...+ ..-..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 44456678899999999999999999877432223334444455555444445555444445555554443333 33455
Q ss_pred hHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhh
Q psy3481 151 KTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHI 225 (340)
Q Consensus 151 k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i 225 (340)
.+...++.++..++++..+...+.+....++... + ......+..---.+|..+++..+....+..+..+
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ---N---DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---C---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6778899999999999999999988777654322 1 1111122221122455666777666666665543
No 30
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.41 E-value=0.35 Score=41.58 Aligned_cols=143 Identities=6% Similarity=0.071 Sum_probs=85.7
Q ss_pred hcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHH
Q psy3481 36 YYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSIN 114 (340)
Q Consensus 36 y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~ 114 (340)
|..|..+ ...+.++|++.|+++++.. + ...+.-.++..++.+++++|++++..+.|++++..- +.-....-+-...
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~-p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQLEALDNRY-P-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-T-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHH
Confidence 4444443 4567899999999999875 2 346778899999999999999999999999998754 3222110010111
Q ss_pred HHHHH---------hhcC----CChhHHHHHHHHHHHHHhhccc-hhhhH-------------hHHhHHHHhhhcccchH
Q psy3481 115 SILDY---------ISTS----KNMELLQDFYETTLEALKDAKN-DRLWF-------------KTNTKLGKLYFDREDFN 167 (340)
Q Consensus 115 ~ild~---------~~~~----~~~~~~~~~~~~~~~~~~~~~~-~rlf~-------------k~n~kL~~l~~~m~~~~ 167 (340)
..+-+ +... .+....++-.+...++++...+ ...+- .....++.+++..+++.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~ 164 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV 164 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 11100 0000 0111222333333444432211 22111 12256788999999999
Q ss_pred HHHHHHHHHHhhcC
Q psy3481 168 KLSRILKQLHQSCQ 181 (340)
Q Consensus 168 ~lp~~l~~lH~~~k 181 (340)
.+-..+.++...+.
T Consensus 165 ~A~~~~~~~l~~~p 178 (225)
T 2yhc_A 165 AVVNRVEGMLRDYP 178 (225)
T ss_dssp HHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCc
Confidence 99999999988863
No 31
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.40 E-value=0.11 Score=46.70 Aligned_cols=134 Identities=10% Similarity=0.017 Sum_probs=85.7
Q ss_pred cCCHHHHHHHHHhhcccccccchhh-HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhcc-chhhHHHHHHHHHHHhh
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEW-GFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAV-TRNYSEKSINSILDYIS 121 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w-~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v-~k~~~~k~i~~ild~~~ 121 (340)
..+.++|++.|++.++........| ...++..++.++..+|+++++..+|++.+...+..- .......+.+++-..+.
T Consensus 128 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~ 207 (293)
T 2qfc_A 128 KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp SSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence 3488999999999987542222333 456899999999999999999999999998763221 11122244455555444
Q ss_pred cCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHH-HHHHHHHH
Q psy3481 122 TSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKL-SRILKQLH 177 (340)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~l-p~~l~~lH 177 (340)
...+.+...+.++.+++.....++......+...++.+++.++++..+ -..+.+..
T Consensus 208 ~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 444444443444444443322233334455678899999999998877 55555443
No 32
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.40 E-value=0.16 Score=41.59 Aligned_cols=137 Identities=12% Similarity=0.051 Sum_probs=89.8
Q ss_pred cCCHHHHHHHHHhhccccc-ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccc-hh-hHHHHHHHHHHHh
Q psy3481 44 EDDPKAALQSFQKVLDLES-GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVT-RN-YSEKSINSILDYI 120 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~-~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~-k~-~~~k~i~~ild~~ 120 (340)
..+.++|++.|++.++.-. .....+.-.++-.+..++..+|++++..+.+++.+...+ ..+ .. ........+-...
T Consensus 39 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~lg~~~ 117 (203)
T 3gw4_A 39 MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVA 117 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCccHHHHHHHHHHHHHHH
Confidence 4678999999999887432 123456778899999999999999999999999998863 333 11 2222333333322
Q ss_pred hcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcC
Q psy3481 121 STSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 181 (340)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~k 181 (340)
....+.+...+.++.+++..+...+......+-..++.+++.++++...-..+.+...-.+
T Consensus 118 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 118 LHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 2223333333344444443333333444455568899999999999999888887776654
No 33
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.39 E-value=0.13 Score=46.18 Aligned_cols=133 Identities=11% Similarity=0.019 Sum_probs=86.3
Q ss_pred cCCHHHHHHHHHhhcccccccchhh--HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhc-cchhhHHHHHHHHHHHh
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEW--GFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSA-VTRNYSEKSINSILDYI 120 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w--~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~-v~k~~~~k~i~~ild~~ 120 (340)
..+.++|++.|++.++.... ...| .-.++-.++.++..+|+++++..+|++.+...+.. -.+.....+..++-..+
T Consensus 128 ~~~~~~Ai~~~~~al~~~~~-~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y 206 (293)
T 3u3w_A 128 KVDYEYCILELKKLLNQQLT-GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp SSCHHHHHHHHHHHHHTCCC-CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 34789999999999985422 2222 24468899999999999999999999999877432 23333344445555544
Q ss_pred hcCCChhHHHHHHHHHHHHHhhc---cchhhhHhHHhHHHHhhhcccc-hHHHHHHHHHHHhhc
Q psy3481 121 STSKNMELLQDFYETTLEALKDA---KNDRLWFKTNTKLGKLYFDRED-FNKLSRILKQLHQSC 180 (340)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~---~~~rlf~k~n~kL~~l~~~m~~-~~~lp~~l~~lH~~~ 180 (340)
....+.+.. .+.+.++++.+ ++......+...++.+++.+++ +..+-..+.+-..-+
T Consensus 207 ~~~~~y~~A---~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 207 YLDSRYEES---LYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHTTCHHHH---HHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHH---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 444444433 34444444443 2233335577889999999995 477776666655444
No 34
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=96.20 E-value=0.00093 Score=60.07 Aligned_cols=44 Identities=23% Similarity=0.389 Sum_probs=40.9
Q ss_pred hhhhcccccccccchhHHHhhhccCCCCCcchHHHHHHHHHhcC
Q psy3481 297 GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340 (340)
Q Consensus 297 G~rhS~~~~~~~~~~~F~eaF~~yde~g~~~~~~~LKYl~L~~~ 340 (340)
|..|...+++..|++.|.+||+++++.+.++|.++|||+|.++|
T Consensus 21 Gr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~L 64 (203)
T 3t5x_A 21 GRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKM 64 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999988999999999998875
No 35
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.15 E-value=0.42 Score=38.92 Aligned_cols=154 Identities=12% Similarity=0.111 Sum_probs=98.0
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS 123 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~ 123 (340)
..+.++|++.|+++++.+ ++. ..++..++.++.++|++++....+++.+... +..... ...+-......
T Consensus 18 ~g~~~~A~~~~~~al~~~-p~~----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~ 86 (184)
T 3vtx_A 18 KGDFDGAIRAYKKVLKAD-PNN----VETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEA-----YYILGSANFMI 86 (184)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHH-----HHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHH-----HHHHHHHHHHc
Confidence 357799999999999987 333 3578899999999999999999999887754 322221 12222222222
Q ss_pred CChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHH
Q psy3481 124 KNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEI 203 (340)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI 203 (340)
.+.+. ..+...++++...+ ...+...++.+++.++++..+-..+.+..... |..+ ++...--
T Consensus 87 ~~~~~---a~~~~~~a~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~----------~~~~~lg 148 (184)
T 3vtx_A 87 DEKQA---AIDALQRAIALNTV---YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFI----------RAYQSIG 148 (184)
T ss_dssp TCHHH---HHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH----------HHHHHHH
T ss_pred CCHHH---HHHHHHHHHHhCcc---chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhh----------hHHHHHH
Confidence 22222 23334444443322 12344668999999999999999999887762 4311 1222112
Q ss_pred HHHHhhhchHHHHHHHHhhhhhh
Q psy3481 204 QMYTAQKNNKKLKKLYEQSLHIK 226 (340)
Q Consensus 204 ~~~~~l~n~~~l~~~~~~~~~i~ 226 (340)
.+|..+++.......|..+..+.
T Consensus 149 ~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 149 LAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhCC
Confidence 35677888888778887765443
No 36
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.65 E-value=1.2 Score=40.43 Aligned_cols=175 Identities=7% Similarity=-0.028 Sum_probs=106.7
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhh-HHHHHHHHHHHhh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNY-SEKSINSILDYIS 121 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~-~~k~i~~ild~~~ 121 (340)
...++++|++.+++.+...+.....+...++-.+..++..+|++++....+++.+.... ...... .......+-....
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR-QHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHH
Confidence 46788999999999987653222334566888889999999999999999999988653 222111 1111222222222
Q ss_pred cCCChhHHHHHHHHHHHHHhhccch--hhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHH
Q psy3481 122 TSKNMELLQDFYETTLEALKDAKND--RLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIY 199 (340)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~--rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~ 199 (340)
...+.+...+.++..++..+..... .....+...|+.+++.++++......+.+......... ++ . ...++
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~---~-~~~~~ 177 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ---PQ---Q-QLQCL 177 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC---GG---G-GHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC---cH---H-HHHHH
Confidence 2233333333344443332222111 23344556789999999999999999999887765332 11 1 22233
Q ss_pred HHHHHHHHhhhchHHHHHHHHhhhhh
Q psy3481 200 ALEIQMYTAQKNNKKLKKLYEQSLHI 225 (340)
Q Consensus 200 aleI~~~~~l~n~~~l~~~~~~~~~i 225 (340)
..-..++...++.......+..+..+
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33344566778888877777776544
No 37
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.53 E-value=1.3 Score=39.94 Aligned_cols=174 Identities=9% Similarity=-0.007 Sum_probs=103.9
Q ss_pred CHHHHHHHHHhhccccc------ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHH
Q psy3481 46 DPKAALQSFQKVLDLES------GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDY 119 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~------~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~ 119 (340)
+.++|.+.+++...... +..-+-....+.+...++..+|++++..+.|.+.+......=....+.+..+.+-..
T Consensus 6 ~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~ 85 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMM 85 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566666665543211 111233445677778899999999999999999888653222333455566666665
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHH
Q psy3481 120 ISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIY 199 (340)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~ 199 (340)
+....+.+..-+.|+.+++......+...-..+-..++.++.. +++..+-..+.+...-++... . ......+.
T Consensus 86 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~---~---~~~~~~~~ 158 (307)
T 2ifu_A 86 LKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE---R---LRQAAELI 158 (307)
T ss_dssp HHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC---C---hhHHHHHH
Confidence 5554444444445666655544444444445666788999988 999998888887666544221 1 11112222
Q ss_pred HHHHHHHHhhhchHHHHHHHHhhhhhh
Q psy3481 200 ALEIQMYTAQKNNKKLKKLYEQSLHIK 226 (340)
Q Consensus 200 aleI~~~~~l~n~~~l~~~~~~~~~i~ 226 (340)
.---.++..+++.......|..+..+.
T Consensus 159 ~~lg~~~~~~g~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 159 GKASRLLVRQQKFDEAAASLQKEKSMY 185 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 211235666777777777777665543
No 38
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.37 Score=44.72 Aligned_cols=137 Identities=10% Similarity=0.065 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHhhcccccc-cchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC
Q psy3481 45 DDPKAALQSFQKVLDLESG-ERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS 123 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~~-~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~ 123 (340)
++.+.|++.+++.+..... ....-..+....+++++..+|+|+++...+++++...+..-.+......+..+...+...
T Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (434)
T 4b4t_Q 109 DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKL 188 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence 3456677766666543321 112234677888999999999999999999999998866666666677777787777777
Q ss_pred CChhHHHHHHHHHHHHHhhcc-chhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcC
Q psy3481 124 KNMELLQDFYETTLEALKDAK-NDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 181 (340)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~-~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~k 181 (340)
.+.+.....|+.++....... ..++..+....++.++...+++..+-..+.+....+.
T Consensus 189 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 189 RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 777777777777766543332 3577777888888999999999988877766665543
No 39
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.13 Score=50.42 Aligned_cols=168 Identities=12% Similarity=0.075 Sum_probs=81.7
Q ss_pred ccccccccccCCCC-CCCccchhhhhhcccc--ccccCCHHHHHHHHHhhccccc-------------------------
Q psy3481 11 DEEEDYGLEYSEDS-NSEPDVDLENQYYNSK--ALKEDDPKAALQSFQKVLDLES------------------------- 62 (340)
Q Consensus 11 d~~e~y~~~~~~~~-~~~~~~~lEn~y~~ak--~~~~~~~~~a~~~~~~v~~~~~------------------------- 62 (340)
+|||+.+.+|+|.. ...||.++...+|.-. ....++.++|++...+.+....
T Consensus 4 ~~e~~~e~~y~d~~~~k~P~~~la~~~f~l~~~~~~~~~~~~~~~~l~~~ik~~~ma~~y~~l~~~l~~~~~~~~~~~~~ 83 (429)
T 4b4t_R 4 VEEKSQEVEYVDPTVNRVPNYEVSEKAFLLTQSKVSIEQRKEAAEFVLAKIKEEEMAPYYKYLCEEYLVNNGQSDLEHDE 83 (429)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHSCCCCSCCSSCSHH
T ss_pred chhhhhhccccCcccccCCChHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccchhhhhhh
Confidence 46678888998875 6779999888888643 2334455566554444332110
Q ss_pred -----------------------c-------cchhhHH----------HHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhh
Q psy3481 63 -----------------------G-------ERGEWGF----------KALKQMIKINFKLSNYKEMMSRYKQLLLYIKS 102 (340)
Q Consensus 63 -----------------------~-------~~~~w~f----------ka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~ 102 (340)
. +..+|.. ++...+++++++.|+++++.+.|.+++.+..+
T Consensus 84 ~~~~~~~~~~~d~~~~~~~~~~n~~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~ 163 (429)
T 4b4t_R 84 KSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS 163 (429)
T ss_dssp HHHHHHHTTTTCCSSCTTTTCCSSCCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC
T ss_pred hhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Confidence 0 0111222 24556778999999999999999999998833
Q ss_pred ccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcC
Q psy3481 103 AVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 181 (340)
Q Consensus 103 ~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~k 181 (340)
++.+.+= +-.++.......|...++..++.+...+....+..+-.+....-+.++.+.++|..+...|-++.+.+.
T Consensus 164 --~~~kid~-~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 164 --TGAKIDV-MLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp --CCSHHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred --hHHHHHH-HHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 3444432 222333222335666677777777776665555444455556667788889999998887777666553
No 40
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=94.88 E-value=0.54 Score=37.05 Aligned_cols=105 Identities=10% Similarity=0.124 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcc----ch
Q psy3481 71 KALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAK----ND 146 (340)
Q Consensus 71 ka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 146 (340)
.+.+++...++++|+|++.++.|++.+..- |.-.. ..+++=.......+.+. -.+.+.++|+-.. ..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~-----~~~nlg~~~~~~~~~~~---A~~~~~~al~~~~~~~~~~ 79 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNIT-----FYNNKAAVYFEEKKFAE---CVQFCEKAVEVGRETRADY 79 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----HHHHHHHHHHHTTCHHH---HHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH-----HHHhHHHHHHHhhhHHH---HHHHHHHHHHhCcccchhh
Confidence 467889999999999999999999998754 43222 22222222223333332 3444445554321 12
Q ss_pred hhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCC
Q psy3481 147 RLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDD 184 (340)
Q Consensus 147 rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~ 184 (340)
....++-.+++.++..++++..+-..+.+.....++|.
T Consensus 80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 34456778899999999999999999888777655443
No 41
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.036 Score=54.16 Aligned_cols=51 Identities=22% Similarity=0.446 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccc
Q psy3481 110 EKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDRED 165 (340)
Q Consensus 110 ~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~ 165 (340)
..-|+++|+.++...++++.+.+++ +++..|+|||..++.+|...+.+...
T Consensus 4 ~~~i~~~l~~~~~~~~~~l~~~~~~-----le~~~~~kLWhqlt~~L~~~~~~~~~ 54 (393)
T 4b4t_O 4 NHEIDTILSTLRMEADPSLHPLFEQ-----FEKFYEEKLWFQLSESLTKFFDDAKS 54 (393)
T ss_dssp HHHHHHHHHHHHCSSCSSCCSSHHH-----HHHHHCCSSCCSCCCTTHHHHCCCSS
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHhChhc
Confidence 4568999999999888887666664 67777899999998888886665443
No 42
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=94.66 E-value=2.1 Score=37.53 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=95.4
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
...+.++|++.|+++++.. +.. ..++..++.++.+.|++++..+.+++.+..- +.-. .....+-.....
T Consensus 132 ~~~~~~~A~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~la~~~~~ 200 (359)
T 3ieg_A 132 DGADYTAAITFLDKILEVC-VWD----AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNT-----EAFYKISTLYYQ 200 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCH-----HHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-CCc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHH
Confidence 3567899999999999876 322 2567888999999999999999999987643 2211 222333333332
Q ss_pred CCChhHHHHHHHHHHHHHhhcc-chhhhHh--------HHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCcccccccc
Q psy3481 123 SKNMELLQDFYETTLEALKDAK-NDRLWFK--------TNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGT 193 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~-~~rlf~k--------~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~ 193 (340)
..+.+. -.+...++++... +...|.- ....++.+++..+++..+-..+.+..... |. + ..
T Consensus 201 ~~~~~~---A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~---~---~~ 269 (359)
T 3ieg_A 201 LGDHEL---SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PS---V---AE 269 (359)
T ss_dssp HTCHHH---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CS---S---HH
T ss_pred cCCHHH---HHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC---c---hH
Confidence 333333 2344444444332 2332221 23566889999999999999999988874 33 1 12
Q ss_pred chhHHHHHHHHHHHhhhchHHHHHHHHhh
Q psy3481 194 QLLEIYALEIQMYTAQKNNKKLKKLYEQS 222 (340)
Q Consensus 194 llleV~aleI~~~~~l~n~~~l~~~~~~~ 222 (340)
....++..-..++...++.......+..+
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 298 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEV 298 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 22222222233455566666555555444
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=94.65 E-value=1.8 Score=36.77 Aligned_cols=134 Identities=12% Similarity=0.008 Sum_probs=87.9
Q ss_pred hhhcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHH
Q psy3481 34 NQYYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKS 112 (340)
Q Consensus 34 n~y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~ 112 (340)
+...-++.. ...+.++|++.|+++++.. +........++..++.++.++|++++....|++.+..- +.... .
T Consensus 7 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~-----~ 79 (275)
T 1xnf_A 7 KSEVLAVPLQPTLQQEVILARMEQILASR-ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPE-----V 79 (275)
T ss_dssp CGGGSCCCCCCCHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHH-----H
T ss_pred cCcceeeccCccchHHHHHHHHHHHHhcc-cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHH-----H
Confidence 334444333 2345699999999999874 22344667889999999999999999999999998754 33222 2
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 113 INSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 113 i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
...+-.......+.+. -.+...++++...+. ..+-..++.+++.++++..+-..+.+.....
T Consensus 80 ~~~la~~~~~~~~~~~---A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 80 FNYLGIYLTQAGNFDA---AYEAFDSVLELDPTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp HHHHHHHHHHTTCHHH---HHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccCHHH---HHHHHHHHHhcCccc---cHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2333333333333333 234444444433221 2344678999999999999999999988753
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.53 E-value=1.9 Score=36.43 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=31.5
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
..+.++|++.|++.++.. +.. -.++..++.++.+.|++++..+.|++.+..
T Consensus 50 ~~~~~~A~~~~~~al~~~-~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 100 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEID-PSS----ADAHAALAVVFQTEMEPKLADEEYRKALAS 100 (252)
T ss_dssp TTCTGGGHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcC-CCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566777777776654 221 235566666777777777777777766554
No 45
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.47 E-value=2.2 Score=37.06 Aligned_cols=50 Identities=18% Similarity=0.058 Sum_probs=37.6
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
+.++|++.|++.+... +... .++..++.++.++|++++..+.|++.+...
T Consensus 106 ~~~~A~~~~~~a~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 155 (330)
T 3hym_B 106 KNEHARRYLSKATTLE-KTYG----PAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCT----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhC-CccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence 6788999999888776 3222 235677888888888888888888887754
No 46
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.46 E-value=2.8 Score=38.07 Aligned_cols=174 Identities=9% Similarity=0.069 Sum_probs=100.7
Q ss_pred cCCHHHHHHHHHhhcccccc-cchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccch--hhHHHHHHHHHHHh
Q psy3481 44 EDDPKAALQSFQKVLDLESG-ERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTR--NYSEKSINSILDYI 120 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~-~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k--~~~~k~i~~ild~~ 120 (340)
..+.++|++.+++.+..... ........++-.+..++..+|++++....|++.+......-.. .........+-...
T Consensus 66 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 145 (373)
T 1hz4_A 66 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 145 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence 46789999999998875421 1122345667888999999999999999999998866321111 11222222232222
Q ss_pred hcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHH
Q psy3481 121 STSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYA 200 (340)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~a 200 (340)
....+.+...+.++..++......... ...+...+++++...+++...-..+.+.....+.+.. + ......+..
T Consensus 146 ~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~---~--~~~~~~~~~ 219 (373)
T 1hz4_A 146 WAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY---H--SDWISNANK 219 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC---C--HHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc---c--hhHHHHHHH
Confidence 233344444344444443322222222 4456678999999999999999999988766554331 0 001111111
Q ss_pred HHHHHHHhhhchHHHHHHHHhhh
Q psy3481 201 LEIQMYTAQKNNKKLKKLYEQSL 223 (340)
Q Consensus 201 leI~~~~~l~n~~~l~~~~~~~~ 223 (340)
....++...++.......+..+.
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC
Confidence 22234555667666666555543
No 47
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=94.19 E-value=2.1 Score=35.70 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHhhcccccc--cchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLESG--ERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~--~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
..+.++|++.|++.++..+. ....+.-.++..++.++.++|++++..+.|++.+..
T Consensus 51 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 108 (258)
T 3uq3_A 51 KGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 45789999999999986632 233444788999999999999999999999999884
No 48
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=94.03 E-value=2.9 Score=36.62 Aligned_cols=163 Identities=13% Similarity=0.181 Sum_probs=104.0
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhH-HHHHHH------
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYS-EKSINS------ 115 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~-~k~i~~------ 115 (340)
...++++|++.|++++... +... .++..++.++.++|++++....+++.+... +....... -..+..
T Consensus 166 ~~~~~~~A~~~~~~~~~~~-~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLK-SDNT----EAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTC-SCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHH
Confidence 3567899999999999876 3222 467789999999999999999999998754 33222111 001100
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhc-cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccc
Q psy3481 116 ILDYISTSKNMELLQDFYETTLEALKDA-KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQ 194 (340)
Q Consensus 116 ild~~~~~~~~~~~~~~~~~~~~~~~~~-~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~l 194 (340)
+-.......+.+ +-.+...++++.. .+...+...-..++.+++.++++..+-..+.+..... |..
T Consensus 240 ~a~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~--------- 305 (359)
T 3ieg_A 240 SAEELIRDGRYT---DATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDN--------- 305 (359)
T ss_dssp HHHHHHHTTCHH---HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC---------
T ss_pred HHHHHHHcCCHH---HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--ccc---------
Confidence 111111222222 2344444555444 3456666777889999999999999999999988762 331
Q ss_pred hhHHHHHHHHHHHhhhchHHHHHHHHhhhhhh
Q psy3481 195 LLEIYALEIQMYTAQKNNKKLKKLYEQSLHIK 226 (340)
Q Consensus 195 lleV~aleI~~~~~l~n~~~l~~~~~~~~~i~ 226 (340)
.++...-..++...++.......|..+....
T Consensus 306 -~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 306 -VNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1122222345667788888777777765443
No 49
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.02 E-value=1.1 Score=40.21 Aligned_cols=130 Identities=14% Similarity=0.104 Sum_probs=85.5
Q ss_pred cCCHHHHHHHHHhhcccccccchh--hHHHHHHHHHHHHhhh-cCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHh
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGE--WGFKALKQMIKINFKL-SNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYI 120 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~--w~fka~~q~~k~~~~~-~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~ 120 (340)
..++++|+..|++.++.. .+.|. ..-.++..+..++.++ |++++.+.+|++.+......-.+.......+.+-...
T Consensus 90 ~g~~~~A~~~~~~Al~l~-~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIF-THRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (292)
T ss_dssp TTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 358899999999999865 32233 3456888999999996 9999999999999987632222223345555555555
Q ss_pred hcCCChhHHHHHHHHHHHHHhhccc-hhh-hH--hHHhHHHHhhhcccchHHHHHHHHHHH
Q psy3481 121 STSKNMELLQDFYETTLEALKDAKN-DRL-WF--KTNTKLGKLYFDREDFNKLSRILKQLH 177 (340)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~-~rl-f~--k~n~kL~~l~~~m~~~~~lp~~l~~lH 177 (340)
....+.+. -.+...++++...+ ... |. ..-.+++.++..++++..+-..+.+..
T Consensus 169 ~~~g~~~~---A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 169 ALDGQYIE---ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHTTCHHH---HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHhCCHHH---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44433332 34444555554422 221 21 244678889999999998887777654
No 50
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=93.99 E-value=2.8 Score=36.38 Aligned_cols=53 Identities=6% Similarity=-0.064 Sum_probs=42.2
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhc-CHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLS-NYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~-~~~~~~~~~~~l~~~~ 100 (340)
...+.++|++.|+++++..+ .. ..++..+..++...| ++++..+.+++.+..-
T Consensus 68 ~~~~~~~A~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~ 121 (330)
T 3hym_B 68 ELNKANELFYLSHKLVDLYP-SN----PVSWFAVGCYYLMVGHKNEHARRYLSKATTLE 121 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TS----THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC
T ss_pred HhhhHHHHHHHHHHHHHhCc-CC----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 35678999999999998763 22 235677889999999 9999999999987643
No 51
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=93.96 E-value=1.3 Score=38.43 Aligned_cols=132 Identities=8% Similarity=0.031 Sum_probs=81.2
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhh--------hcCHHHHHHHHHHHHHHhhhccchhh-HHHHH
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFK--------LSNYKEMMSRYKQLLLYIKSAVTRNY-SEKSI 113 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~--------~~~~~~~~~~~~~l~~~~~~~v~k~~-~~k~i 113 (340)
...+.++|++.|+++++..+ + ....-.++..+..++++ +|++++....|++++..- +.-.... +...+
T Consensus 64 ~~~~~~~A~~~~~~~l~~~p-~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~ 140 (261)
T 3qky_A 64 QNKEYLLAASEYERFIQIYQ-I-DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKI 140 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-T-CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHCC-C-CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHH
Confidence 35678999999999999762 2 23556789999999999 999999999999998754 3211111 11111
Q ss_pred HH-----------HHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcc----------cchHHHHHH
Q psy3481 114 NS-----------ILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDR----------EDFNKLSRI 172 (340)
Q Consensus 114 ~~-----------ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m----------~~~~~lp~~ 172 (340)
.. +-.......+.+ +-.+...++++...+...-..+-..++.+++.+ +++..+-..
T Consensus 141 ~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~ 217 (261)
T 3qky_A 141 RELRAKLARKQYEAARLYERRELYE---AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVEL 217 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHH---HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHH
Confidence 11 111111122222 223333344443322222333446777888766 888888899
Q ss_pred HHHHHhhc
Q psy3481 173 LKQLHQSC 180 (340)
Q Consensus 173 l~~lH~~~ 180 (340)
+.++...+
T Consensus 218 ~~~~~~~~ 225 (261)
T 3qky_A 218 YERLLQIF 225 (261)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHC
Confidence 99988876
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=93.96 E-value=0.57 Score=40.16 Aligned_cols=54 Identities=9% Similarity=-0.034 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
..+.++|++.|++.++. ++..++...++..+..++.++|++++..+.|++.+..
T Consensus 50 ~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 103 (272)
T 3u4t_A 50 LAKYDLAQKDIETYFSK--VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103 (272)
T ss_dssp TTCHHHHHHHHHHHHTT--SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhc--cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 34567777777777773 2334555666777777777777777777777777664
No 53
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=93.93 E-value=4.7 Score=38.81 Aligned_cols=51 Identities=12% Similarity=-0.020 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
..+.++|++.|++.++..+.. ..+...++.++.+.|+++++++.|++.+..
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 436 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQF-----GPAWIGFAHSFAIEGEHDQAISAYTTAARL 436 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467789999999888765221 225567888888888888888888887664
No 54
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=93.92 E-value=0.26 Score=37.21 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=50.7
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILD 118 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild 118 (340)
..+.++|++.|+++++.+ ++.. .++..+..++.++|++++..+.|++.+... +.-+.....+-+..++.
T Consensus 20 ~g~~~~A~~~~~~al~~~-p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 20 HDNASRALALFEELVETD-PDYV----GTYYHLGKLYERLDRTDDAIDTYAQGIEVA-REEGTQKDLSELQDAKL 88 (100)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-hcCCchhHHHHHHHHHH
Confidence 467899999999999987 3322 277889999999999999999999998765 33333344444444444
No 55
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.90 E-value=2.9 Score=38.60 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=41.1
Q ss_pred hhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhh
Q psy3481 146 DRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHI 225 (340)
Q Consensus 146 ~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i 225 (340)
...+..+-..++.++..++++..+-..+.+..... |.. + .+...-..++...++.......|..+..+
T Consensus 291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~---~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDN---V-------NALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTC---H-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccc---H-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34445566777888888888888888888776552 321 0 12222233455667777766666666443
No 56
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=93.83 E-value=3 Score=36.16 Aligned_cols=162 Identities=6% Similarity=0.033 Sum_probs=96.0
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS 123 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~ 123 (340)
..+.++|++.|++.++.. ++ ...++..++.++.+.|++++..+.+++.+..- +.- ......+-......
T Consensus 151 ~~~~~~A~~~~~~~~~~~-~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~-----~~~~~~l~~~~~~~ 219 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMN-PN----DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDD-----AQLWNKLGATLANG 219 (327)
T ss_dssp HHHHHHHHHHHHHHHHHS-TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----HHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHhhC-CC----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCc-----HHHHHHHHHHHHHc
Confidence 446789999999999876 32 23577888999999999999999999988754 221 12233343433333
Q ss_pred CChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHH
Q psy3481 124 KNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEI 203 (340)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI 203 (340)
.+.+.. .+...++++...+. ..+-..++.+++.++++..+-..+.+......................+...-.
T Consensus 220 ~~~~~A---~~~~~~a~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 293 (327)
T 3cv0_A 220 NRPQEA---LDAYNRALDINPGY---VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFR 293 (327)
T ss_dssp TCHHHH---HHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHHcCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHH
Confidence 333333 33334444433221 123357899999999999999999887766433211000000111233333334
Q ss_pred HHHHhhhchHHHHHHHHhh
Q psy3481 204 QMYTAQKNNKKLKKLYEQS 222 (340)
Q Consensus 204 ~~~~~l~n~~~l~~~~~~~ 222 (340)
.++..+++.......+..+
T Consensus 294 ~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 294 MLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHTTCHHHHHHHTTCC
T ss_pred HHHHhcCCHHHHHHHHHHH
Confidence 4566666666666655544
No 57
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=93.83 E-value=2 Score=38.30 Aligned_cols=160 Identities=9% Similarity=-0.011 Sum_probs=96.6
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS 123 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~ 123 (340)
..+.++|++.|++.+...+ ... ...++..++.++.+.|++++....|++.+..- +.- ......+-......
T Consensus 194 ~~~~~~A~~~~~~a~~~~p-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~-----~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDP-TSI--DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND-----YLLWNKLGATLANG 264 (368)
T ss_dssp HHHHHHHHHHHHHHHHHST-TSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----HHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhCc-Ccc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC-----HHHHHHHHHHHHHc
Confidence 4567899999999998763 211 34567789999999999999999999988753 322 22334444444444
Q ss_pred CChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCC---CCCccccccccchhHHHH
Q psy3481 124 KNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQT---DDGEDDLKKGTQLLEIYA 200 (340)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~kt---p~~a~~~~~~~llleV~a 200 (340)
.+.+.. .+...++++...+. ..+...|+.+++.++++..+-..+.+....... |... .......+..
T Consensus 265 g~~~~A---~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~~~ 334 (368)
T 1fch_A 265 NQSEEA---VAAYRRALELQPGY---IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE----GGAMSENIWS 334 (368)
T ss_dssp TCHHHH---HHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----------CCCCCHHHHH
T ss_pred CCHHHH---HHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc----ccchhhHHHH
Confidence 444333 33333444333221 234467899999999999999888876654322 2211 0112233333
Q ss_pred HHHHHHHhhhchHHHHHHHHhh
Q psy3481 201 LEIQMYTAQKNNKKLKKLYEQS 222 (340)
Q Consensus 201 leI~~~~~l~n~~~l~~~~~~~ 222 (340)
.-..++..+++.......+..+
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHhCChHhHHHhHHHH
Confidence 3344566677766666655544
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=93.77 E-value=2.7 Score=35.42 Aligned_cols=50 Identities=20% Similarity=0.289 Sum_probs=28.4
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
..+.++|++.|++.++.. ++. ..++..++.++.++|++++..+.+++.+.
T Consensus 84 ~~~~~~A~~~~~~a~~~~-~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 84 EMEPKLADEEYRKALASD-SRN----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHC-cCc----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 445566666666666554 211 23445556666666666666666666544
No 59
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=93.75 E-value=0.5 Score=39.96 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 45 DDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
.+.++|++.|++.++..++... .+...+..++.++|++++....|++.+.
T Consensus 21 ~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~ 70 (228)
T 4i17_A 21 KNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNIKKYKEAADYFDIAIK 70 (228)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHH
Confidence 3445555555555554310111 2333344555555555555555555443
No 60
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=93.70 E-value=0.57 Score=40.15 Aligned_cols=123 Identities=8% Similarity=0.141 Sum_probs=79.7
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
...+.++|++.|+++++..+ +..+ ++..++.++.++|++++.++.+++.+. . +. .......+...+-.....
T Consensus 15 ~~~~~~~A~~~~~~~l~~~p-~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~-~-~~-~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 15 KNNNYAEAIEVFNKLEAKKY-NSPY----IYNRRAVCYYELAKYDLAQKDIETYFS-K-VN-ATKAKSADFEYYGKILMK 86 (272)
T ss_dssp TTTCHHHHHHHHHHHHHTTC-CCST----THHHHHHHHHHTTCHHHHHHHHHHHHT-T-SC-TTTCCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CcHH----HHHHHHHHHHHHhhHHHHHHHHHHHHh-c-cC-chhHHHHHHHHHHHHHHH
Confidence 45678999999999998773 2221 567788899999999999999999987 3 31 112223333334343333
Q ss_pred CCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 123 SKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
..+.+.. .+...++++...+. ..+-..++.+++.++++..+-..+.+....
T Consensus 87 ~~~~~~A---~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 87 KGQDSLA---IQQYQAAVDRDTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp TTCHHHH---HHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred cccHHHH---HHHHHHHHhcCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 3333333 33333444333221 124467899999999999998888777665
No 61
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=93.65 E-value=1.4 Score=44.23 Aligned_cols=136 Identities=7% Similarity=0.002 Sum_probs=101.1
Q ss_pred cCCHHHHHHHHHhhccccc---ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchh--hHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLES---GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRN--YSEKSINSILD 118 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~---~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~--~~~k~i~~ild 118 (340)
..+.++|+..+++.++... ++.--+.-+++..|..+|..+|+|+++..+|++.+.-.....+.+ .++.+.+++=.
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4567899999999887432 444568999999999999999999999999999998665444442 46777777777
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhc-c-chhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 119 YISTSKNMELLQDFYETTLEALKDA-K-NDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
.+......+.....|+-+++..+.. . +.-.-..+...|+..+.+++++........+...+
T Consensus 402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555666667777777776654 3 33444556677777888899998888888777544
No 62
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=93.58 E-value=2.7 Score=34.86 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=20.5
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
+.++|++.|++.++.. +.. ..++..++.++.+.|++++..+.+++.+.
T Consensus 38 ~~~~A~~~~~~~l~~~-~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 85 (243)
T 2q7f_A 38 DYEKAAEAFTKAIEEN-KED----AIPYINFANLLSSVNELERALAFYDKALE 85 (243)
T ss_dssp ----CCTTHHHHHTTC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-ccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555433 111 23344445555555555555555555443
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.55 E-value=1.5 Score=42.73 Aligned_cols=130 Identities=15% Similarity=0.045 Sum_probs=78.6
Q ss_pred cCCH-HHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhc-----------cch-----
Q psy3481 44 EDDP-KAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSA-----------VTR----- 106 (340)
Q Consensus 44 ~~~~-~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~-----------v~k----- 106 (340)
..+. ++|++.|++.++.+ +.. ..++..+..++.++|+++++.+.|++.+..- +. ...
T Consensus 115 ~g~~~~~A~~~~~~al~~~-p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~lg~~~~~~~~~~~ 188 (474)
T 4abn_A 115 TPDYSPEAEVLLSKAVKLE-PEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-KNKVSLQNLSMVLRQLQTDSG 188 (474)
T ss_dssp SSSCCHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-CCHHHHHHHHHHHTTCCCSCH
T ss_pred ccccHHHHHHHHHHHHhhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHhccCCh
Confidence 3456 88888888888876 322 2366778888888888888888888776532 21 011
Q ss_pred ----hhHHHHHHHHHHHhhcCCC-hhH-------H--H--------HHHHHHHHHHhhccc-hh---hhHhHHhHHHHhh
Q psy3481 107 ----NYSEKSINSILDYISTSKN-MEL-------L--Q--------DFYETTLEALKDAKN-DR---LWFKTNTKLGKLY 160 (340)
Q Consensus 107 ----~~~~k~i~~ild~~~~~~~-~~~-------~--~--------~~~~~~~~~~~~~~~-~r---lf~k~n~kL~~l~ 160 (340)
..-++.+..+-..+...++ ... . . ..++.++++++.+-. +. -...+...|+.++
T Consensus 189 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~ 268 (474)
T 4abn_A 189 DEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLH 268 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHH
Confidence 2222333222222222222 111 0 1 335555555554421 22 4445667899999
Q ss_pred hcccchHHHHHHHHHHHhh
Q psy3481 161 FDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 161 ~~m~~~~~lp~~l~~lH~~ 179 (340)
+.++++..+-..+.+....
T Consensus 269 ~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 269 KYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988776
No 64
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=93.53 E-value=2.1 Score=33.57 Aligned_cols=26 Identities=8% Similarity=0.018 Sum_probs=14.1
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
..++.+++.++++..+-..+.+....
T Consensus 148 ~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 148 RAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34555555555555555555554443
No 65
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=93.52 E-value=2.1 Score=33.47 Aligned_cols=153 Identities=9% Similarity=0.015 Sum_probs=95.0
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
...+.++|++.|+++++.. ++. ..++..++.++.+.|++++..+.+++.+..- +.- ......+-.....
T Consensus 20 ~~~~~~~A~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~-----~~~~~~~a~~~~~ 88 (186)
T 3as5_A 20 KAGRYSQAVMLLEQVYDAD-AFD----VDVALHLGIAYVKTGAVDRGTELLERSLADA-PDN-----VKVATVLGLTYVQ 88 (186)
T ss_dssp HHTCHHHHHHHHTTTCCTT-SCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----HHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-ccC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC-----HHHHHHHHHHHHH
Confidence 3567899999999999876 322 3577889999999999999999999988753 221 1222223332222
Q ss_pred CCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHH
Q psy3481 123 SKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALE 202 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~ale 202 (340)
..+.+.. .+...++++...+. ..+-..++.+++.++++..+-..+.+..... |. . ..+...-
T Consensus 89 ~~~~~~A---~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~---~-------~~~~~~l 150 (186)
T 3as5_A 89 VQKYDLA---VPLLIKVAEANPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PN---E-------GKVHRAI 150 (186)
T ss_dssp HTCHHHH---HHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---C-------HHHHHHH
T ss_pred hcCHHHH---HHHHHHHHhcCcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--cc---c-------hHHHHHH
Confidence 2232222 33333333333221 2334678899999999999999999988764 32 1 1122222
Q ss_pred HHHHHhhhchHHHHHHHHhhhh
Q psy3481 203 IQMYTAQKNNKKLKKLYEQSLH 224 (340)
Q Consensus 203 I~~~~~l~n~~~l~~~~~~~~~ 224 (340)
..++...++.......+..+..
T Consensus 151 a~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666777776666665543
No 66
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=93.51 E-value=4.1 Score=36.62 Aligned_cols=178 Identities=12% Similarity=0.093 Sum_probs=98.0
Q ss_pred chhhhhhcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccch--
Q psy3481 30 VDLENQYYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTR-- 106 (340)
Q Consensus 30 ~~lEn~y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k-- 106 (340)
.+.+.-|..+..+ ...+.++|++.|++.+... +.. -.++..++.++.++|++++..+.|++.+..- +....
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 136 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGD----AEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKAL 136 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 3444455555553 4567889999999998876 222 3456777888888888888888888776532 21111
Q ss_pred -------------hhHHHHHHHHHHHhhcC---------------------CChhHHHHHHHHHHHHHhhccchhhhHhH
Q psy3481 107 -------------NYSEKSINSILDYISTS---------------------KNMELLQDFYETTLEALKDAKNDRLWFKT 152 (340)
Q Consensus 107 -------------~~~~k~i~~ild~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~rlf~k~ 152 (340)
..+.+..+..+..-... ......++-.+...++++...+ ..-..+
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 215 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD-MIDPDL 215 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS-SCCHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC-ccCHHH
Confidence 11222222222211100 0011112223333333333222 012234
Q ss_pred HhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhh
Q psy3481 153 NTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIK 226 (340)
Q Consensus 153 n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~ 226 (340)
-..|+.+++.++++..+-..+.+..... |.. . .+...-..++...++.......|..+..+.
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~------~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVR--PED------Y----SLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC------H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC------H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4568889999999999998888887763 321 0 122222335666778777777777765443
No 67
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=93.43 E-value=2.7 Score=34.27 Aligned_cols=155 Identities=11% Similarity=-0.017 Sum_probs=96.0
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
...+.++|++.|++++... ++. -.++..++.++..+|++++..+.|++.+..- +.- ......+......
T Consensus 20 ~~~~~~~A~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~-----~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 20 RGQDYRQATASIEDALKSD-PKN----ELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDS-----AEINNNYGWFLCG 88 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----HHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhC-ccc----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCC-----hHHHHHHHHHHHH
Confidence 3567899999999999876 322 3467788999999999999999999998754 221 1223334444434
Q ss_pred C-CChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHH
Q psy3481 123 S-KNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYAL 201 (340)
Q Consensus 123 ~-~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~al 201 (340)
. .+.+.. .+...++++ .....-...+-..++.+++..+++..+-..+.+..... |.. ..+...
T Consensus 89 ~~~~~~~A---~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~----------~~~~~~ 152 (225)
T 2vq2_A 89 RLNRPAES---MAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQF----------PPAFKE 152 (225)
T ss_dssp TTCCHHHH---HHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC----------HHHHHH
T ss_pred hcCcHHHH---HHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC----------chHHHH
Confidence 4 443333 333444444 11111112334678889999999999999998887763 321 112222
Q ss_pred HHHHHHhhhchHHHHHHHHhhhh
Q psy3481 202 EIQMYTAQKNNKKLKKLYEQSLH 224 (340)
Q Consensus 202 eI~~~~~l~n~~~l~~~~~~~~~ 224 (340)
-..++...++.......+..+..
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~ 175 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQS 175 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 23345566777766666665543
No 68
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.40 E-value=4.7 Score=37.07 Aligned_cols=161 Identities=10% Similarity=0.053 Sum_probs=102.2
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
...+.++|++.|++.++.. +.. -.++..++.++.+.|+++++.+.|++.+..- +.- ......+......
T Consensus 155 ~~~~~~~A~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~-----~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVC-VWD----AELRELRAECFIKEGEPRKAISDLKAASKLK-NDN-----TEAFYKISTLYYQ 223 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSC-----HHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCC----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC-----HHHHHHHHHHHHH
Confidence 3567899999999999876 322 2457788999999999999999999998753 221 2334444444444
Q ss_pred CCChhHHHHHHHHHHHHHhhccc-hhhhHh--------HHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCcccccccc
Q psy3481 123 SKNMELLQDFYETTLEALKDAKN-DRLWFK--------TNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGT 193 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~-~rlf~k--------~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~ 193 (340)
..+.+.. .+...++++...+ ...|.. ....++.+++..+++..+-..+.+..... |. . ..
T Consensus 224 ~g~~~~A---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~---~---~~ 292 (450)
T 2y4t_A 224 LGDHELS---LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PS---I---AE 292 (450)
T ss_dssp TTCHHHH---HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CS---S---HH
T ss_pred cCCHHHH---HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc---c---hH
Confidence 4444433 3333444443322 222221 12455889999999999999999988753 33 1 22
Q ss_pred chhHHHHHHHHHHHhhhchHHHHHHHHhhhhh
Q psy3481 194 QLLEIYALEIQMYTAQKNNKKLKKLYEQSLHI 225 (340)
Q Consensus 194 llleV~aleI~~~~~l~n~~~l~~~~~~~~~i 225 (340)
...+++..-..++...++.......+..+...
T Consensus 293 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 23344444455677778888777777766543
No 69
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.30 E-value=0.5 Score=34.55 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=52.4
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYI 120 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~ 120 (340)
...+.++|++.|++.++.. ++.. .+++..+..++.++|++++..+.|++.+..- +.-...+....+..++.++
T Consensus 12 ~~~~~~~A~~~~~~al~~~-p~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~a~~~~ 84 (99)
T 2kc7_A 12 NQGDIENALQALEEFLQTE-PVGK---DEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQARKMVMDILNFY 84 (99)
T ss_dssp HHTCHHHHHHHHHHHHHHC-SSTH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHC-CCcH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHH
Confidence 4567899999999999877 3221 1478889999999999999999999998754 4444444333444444444
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=93.26 E-value=2 Score=36.12 Aligned_cols=53 Identities=11% Similarity=0.014 Sum_probs=39.6
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
...+.++|++.|++.++.. +. ...++..+..++.++|++++.++.|++.+..-
T Consensus 54 ~~~~~~~A~~~~~~al~~~-p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 54 NIKKYKEAADYFDIAIKKN-YN----LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp HTTCHHHHHHHHHHHHHTT-CS----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HhhcHHHHHHHHHHHHHhC-cc----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 4566788888888888766 22 34567778888888888888888888876643
No 71
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=93.24 E-value=2.3 Score=33.09 Aligned_cols=122 Identities=7% Similarity=-0.024 Sum_probs=77.0
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
...+.++|++.|++.++.. ++. ..++..++.++.++|++++..+.+++.+..- +.-. .....+-.....
T Consensus 25 ~~~~~~~A~~~~~~al~~~-~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~-----~~~~~~a~~~~~ 93 (166)
T 1a17_A 25 KAKDYENAIKFYSQAIELN-PSN----AIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYI-----KGYYRRAASNMA 93 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-CCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccH-----HHHHHHHHHHHH
Confidence 4567899999999999876 322 4567789999999999999999999998754 3222 222233333323
Q ss_pred CCChhHHHHHHHHHHHHHhhcc-chhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 123 SKNMELLQDFYETTLEALKDAK-NDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~-~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
..+.+.. .+...++++... +...+ .+..++..++..+++..+...+.+....+
T Consensus 94 ~~~~~~A---~~~~~~a~~~~p~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 94 LGKFRAA---LRDYETVVKVKPHDKDAK--MKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp TTCHHHH---HHHHHHHHHHSTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHH---HHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 3333332 334444444332 33333 34556666778888888877776655444
No 72
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=93.15 E-value=1.9 Score=31.67 Aligned_cols=119 Identities=16% Similarity=0.231 Sum_probs=77.7
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS 123 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~ 123 (340)
..+.++|++.|++.++.. +.. ..++..++.++...|++++....+++.+..- +.. ......+.......
T Consensus 14 ~~~~~~A~~~~~~~~~~~-~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~-----~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 14 QGDYDEAIEYYQKALELD-PRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRS-----AEAWYNLGNAYYKQ 82 (136)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC-----HHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHHcC-Ccc----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCc-----hHHHHHHHHHHHHh
Confidence 457899999999998765 221 3466778999999999999999999987643 221 22233344444334
Q ss_pred CChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 124 KNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
.+.+.. .+...++++...+. ..+...++.+++..+++..+...+.+....
T Consensus 83 ~~~~~A---~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEA---IEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHH---HHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHH---HHHHHHHHHhCCCC---hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 333333 33344444433221 123356889999999999999888877654
No 73
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=93.07 E-value=0.65 Score=39.81 Aligned_cols=117 Identities=11% Similarity=0.066 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCC
Q psy3481 45 DDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSK 124 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~ 124 (340)
.+.++|++.|++.++.. ++.. .+...+..++.++|++++....|++.+..- . .......+-.......
T Consensus 98 g~~~~A~~~~~~al~~~-P~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~------~~~~~~~la~~~~~~g 165 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVN-PRYA----PLHLQRGLVYALLGERDKAEASLKQALALE-D------TPEIRSALAELYLSMG 165 (217)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C------CHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhC-cccH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c------chHHHHHHHHHHHHcC
Confidence 56789999999999987 3222 456688999999999999999999987632 1 1222223333222223
Q ss_pred ChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 125 NMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
+.+.. .+....+++...+. ..+-..|+.++..++++...-..+.++|..
T Consensus 166 ~~~~A---~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 214 (217)
T 2pl2_A 166 RLDEA---LAQYAKALEQAPKD---LDLRVRYASALLLKGKAEEAARAAALEHHH 214 (217)
T ss_dssp CHHHH---HHHHHHHHHHSTTC---HHHHHHHHHHHTC-----------------
T ss_pred CHHHH---HHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 33332 33333344333221 233457899999999999999999999864
No 74
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=93.06 E-value=0.25 Score=49.59 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=37.3
Q ss_pred hhhhcccccccccchhHHHhhhc--cCCCC----CcchHHHHHHHHHhcC
Q psy3481 297 GKMHLREGEFEKAHTDFFEAFKN--YDESG----SPRRTTCLKYLVLANM 340 (340)
Q Consensus 297 G~rhS~~~~~~~~~~~F~eaF~~--yde~g----~~~~~~~LKYl~L~~~ 340 (340)
|+.|...+++..|++.|.+||++ ++++| ...|.++|||+|.++|
T Consensus 227 Gr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~L 276 (455)
T 3t5v_B 227 GRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGL 276 (455)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHH
Confidence 88888888999999999999998 55544 3578999999999875
No 75
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=93.02 E-value=1.7 Score=36.10 Aligned_cols=119 Identities=12% Similarity=0.088 Sum_probs=68.2
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
...+.++|++.|+++++.. +.. -.++..++.++.++|++++..+.+++.+... +.-. .....+-.....
T Consensus 69 ~~~~~~~A~~~~~~~~~~~-~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~~a~~~~~ 137 (243)
T 2q7f_A 69 SVNELERALAFYDKALELD-SSA----ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENG-----DLFYMLGTVLVK 137 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSH-----HHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC-Ccc----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHH
Confidence 4567889999999998876 221 3566778888999999999999998887754 2211 122223332223
Q ss_pred CCChhHHHHHHHHHHHHHhhccc-hhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 123 SKNMELLQDFYETTLEALKDAKN-DRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~-~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
..+.+.. .+...++++...+ .. +-..++.+++..+++..+-..+.+....
T Consensus 138 ~~~~~~A---~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 138 LEQPKLA---LPYLQRAVELNENDTE----ARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp TSCHHHH---HHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hccHHHH---HHHHHHHHHhCCccHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333322 3333344433322 12 2244566666666666666666555444
No 76
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=92.95 E-value=3.2 Score=41.54 Aligned_cols=145 Identities=8% Similarity=0.052 Sum_probs=96.1
Q ss_pred HHHhhhcCHHHHHHHHHHHHHHhhhccchh--hHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc--cchhhhHhHH
Q psy3481 78 KINFKLSNYKEMMSRYKQLLLYIKSAVTRN--YSEKSINSILDYISTSKNMELLQDFYETTLEALKDA--KNDRLWFKTN 153 (340)
Q Consensus 78 k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~--~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~--~~~rlf~k~n 153 (340)
.-+..+|+|+++...|++.+.-....++.+ .+.++.+++-..+....+.+.....++.+++..+.. .+..--+.+-
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 345688999999999999998765555543 688888988887776666666666777777765543 3455566677
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhhh
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIK 226 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~ 226 (340)
.+||.++...|++..+.+.+.+...-+..-.+.+-| .+.++..+--+.+..++-....-..|..++..+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp----~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP----ITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999888777655543333222 222333333334444444444445666655433
No 77
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=92.89 E-value=1.6 Score=36.12 Aligned_cols=121 Identities=15% Similarity=0.091 Sum_probs=79.1
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
...+.++|++.|+++++. ...++..++.++.++|++++..+.|++.+..- +... .....+-.....
T Consensus 18 ~~~~~~~A~~~~~~a~~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~-----~~~~~lg~~~~~ 83 (213)
T 1hh8_A 18 DKKDWKGALDAFSAVQDP--------HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLA-----VAYFQRGMLYYQ 83 (213)
T ss_dssp HTTCHHHHHHHHHTSSSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHcCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch-----HHHHHHHHHHHH
Confidence 356789999999999732 13588899999999999999999999998754 3222 222233333323
Q ss_pred CCChhHHHHHHHHHHHHHhhccc-h------------hhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 123 SKNMELLQDFYETTLEALKDAKN-D------------RLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~-~------------rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
..+.+.. .+...++++...+ . .-...+-..++.+++.++++..+-..+.+.....
T Consensus 84 ~~~~~~A---~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLA---IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHH---HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHH---HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 3333332 3334444442211 1 1122345778999999999999999998887664
No 78
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=92.75 E-value=5.3 Score=35.85 Aligned_cols=50 Identities=8% Similarity=-0.088 Sum_probs=29.1
Q ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 50 ALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 50 a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
++..+.+..... .+.......++-+++..++++|++++..+.|++.+..-
T Consensus 46 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 95 (365)
T 4eqf_A 46 TVSASEKGYYFH-TENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD 95 (365)
T ss_dssp -------CCCCC-SSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHhhhcc-cCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344455554433 22222223345677889999999999999999998743
No 79
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=92.74 E-value=1.4 Score=35.57 Aligned_cols=117 Identities=8% Similarity=-0.022 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCC
Q psy3481 45 DDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSK 124 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~ 124 (340)
.+.++|++.|++.+..+ ++. -.+.-.+.++|+++|++++..+.|++.+..- +.-+. ....+=.......
T Consensus 11 ~~~e~ai~~~~~a~~~~-p~~----~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~-----a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSP-RQK----SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPK-----AHRFLGLLYELEE 79 (150)
T ss_dssp HHHHHHHHHHHHHSCSH-HHH----HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----HHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHhcccC-ccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHHcC
Confidence 35689999999998876 322 2233578999999999999999999998743 43222 2222323233333
Q ss_pred ChhHHHHHHHHHHHHHhhc-cchhhhHhHHhHHHHhhhcccchHH-HHHHHHHHHhh
Q psy3481 125 NMELLQDFYETTLEALKDA-KNDRLWFKTNTKLGKLYFDREDFNK-LSRILKQLHQS 179 (340)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~-~~~rlf~k~n~kL~~l~~~m~~~~~-lp~~l~~lH~~ 179 (340)
+.+.. .+...++++-. ++.. +-..|+.+++.++++.. +..++.+...-
T Consensus 80 ~~~~A---~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKA---VECYRRSVELNPTQKD----LVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHH---HHHHHHHHHHCTTCHH----HHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHH---HHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 33333 33334444433 2223 33568899999998864 44556655543
No 80
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=92.68 E-value=5.2 Score=37.70 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=34.8
Q ss_pred hHHHHhhhcc----------cchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhh
Q psy3481 154 TKLGKLYFDR----------EDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSL 223 (340)
Q Consensus 154 ~kL~~l~~~m----------~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~ 223 (340)
..++.++..+ +++..+-..+.+..... |.. . ++...-..++..+++.......|..+.
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~------~----~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRS------E----QAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTC------H----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCC------H----HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4445566666 77777777777766552 221 1 122222345666777777777777665
Q ss_pred hhh
Q psy3481 224 HIK 226 (340)
Q Consensus 224 ~i~ 226 (340)
.+.
T Consensus 490 ~~~ 492 (537)
T 3fp2_A 490 ILA 492 (537)
T ss_dssp HHC
T ss_pred HhC
Confidence 443
No 81
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=92.62 E-value=5.3 Score=35.52 Aligned_cols=176 Identities=10% Similarity=0.115 Sum_probs=97.8
Q ss_pred hhhhhhcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccch---
Q psy3481 31 DLENQYYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTR--- 106 (340)
Q Consensus 31 ~lEn~y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k--- 106 (340)
+.+.-|..+..+ ...+.++|++.|+++++.. +.. ..++..++.++.++|++++..+.|++.+..- +.-..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 136 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKH----MEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALM 136 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 344445555543 4567899999999999876 322 2466677888888888888888888877643 21111
Q ss_pred ---------hhHHHHHHHHHHHhhcCCCh-----------------------h--HHHHHHHHHHHHHhhc----cchhh
Q psy3481 107 ---------NYSEKSINSILDYISTSKNM-----------------------E--LLQDFYETTLEALKDA----KNDRL 148 (340)
Q Consensus 107 ---------~~~~k~i~~ild~~~~~~~~-----------------------~--~~~~~~~~~~~~~~~~----~~~rl 148 (340)
...++.+..+-..+...++. . .....++.+++.++.+ .+. .
T Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-~ 215 (368)
T 1fch_A 137 ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS-I 215 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS-C
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCc-c
Confidence 11122222222211111110 0 0112233333333322 221 0
Q ss_pred hHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhh
Q psy3481 149 WFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHI 225 (340)
Q Consensus 149 f~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i 225 (340)
-..+...++.+++..+++..+-..+.+..... |.. ..+...-..++..+++.......|..+..+
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 280 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PND----------YLLWNKLGATLANGNQSEEAVAAYRRALEL 280 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23445678899999999999998888877662 331 012222234566677777777777766543
No 82
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=92.57 E-value=3.7 Score=38.28 Aligned_cols=158 Identities=12% Similarity=0.137 Sum_probs=73.1
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCC
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKN 125 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~ 125 (340)
+.++|++.|++++... +.. ..++..++.++.+.|++++....+++.+... +.-. .....+-.......+
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PEN----IFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAP-----EVPNFFAEILTDKND 387 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSC----SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCS-----HHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhC-hhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCH-----HHHHHHHHHHHHCCC
Confidence 4456666666665544 211 1244555666666666666666666665432 2111 112222222222222
Q ss_pred hhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhc---ccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHH
Q psy3481 126 MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFD---REDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALE 202 (340)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~---m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~ale 202 (340)
.+...+.++.+++.-...........+...++.+++. .+++..+-..+.+..... |.. ..+...-
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~----------~~~~~~l 455 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRS----------EQAKIGL 455 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTC----------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--ccc----------HHHHHHH
Confidence 2222222222222111111111112244567777777 777777777777766542 221 0122222
Q ss_pred HHHHHhhhchHHHHHHHHhhhhhh
Q psy3481 203 IQMYTAQKNNKKLKKLYEQSLHIK 226 (340)
Q Consensus 203 I~~~~~l~n~~~l~~~~~~~~~i~ 226 (340)
..++...++.......|..+..+.
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhc
Confidence 345556667666666666654433
No 83
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=92.51 E-value=4.1 Score=33.93 Aligned_cols=129 Identities=13% Similarity=0.229 Sum_probs=75.6
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhh--HHHHHHHHHHHhh
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNY--SEKSINSILDYIS 121 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~--~~k~i~~ild~~~ 121 (340)
..+.++|++.|++.++.. .. ..++..++.++.+.|++++.++.+++.+... +.....+ .......+-....
T Consensus 18 ~~~~~~A~~~~~~a~~~~-~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~l~~~~~ 90 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH-KD-----ITYLNNRAAAEYEKGEYETAISTLNDAVEQG-REMRADYKVISKSFARIGNAYH 90 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS-CC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhh-cc-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccccchHHHHHHHHHHHHHHH
Confidence 457899999999999875 22 3577889999999999999999999988755 3221111 1233333333333
Q ss_pred cCCChhHHHHHHHHHHH-------------------HHhhc-cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 122 TSKNMELLQDFYETTLE-------------------ALKDA-KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 122 ~~~~~~~~~~~~~~~~~-------------------~~~~~-~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
...+.+...+.++.+++ .++.+ +...-...+...++.+++..+++..+-..+.+....
T Consensus 91 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 168 (258)
T 3uq3_A 91 KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 33333322222222222 11111 011112223456777777788888777777777665
No 84
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=92.43 E-value=3.7 Score=33.35 Aligned_cols=123 Identities=9% Similarity=-0.040 Sum_probs=80.2
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhh-cCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKL-SNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIS 121 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~-~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~ 121 (340)
...+.++|++.|++.+... +.. -.++..++.++.+. |++++....+++.+. . +.-+. .......+-....
T Consensus 54 ~~~~~~~A~~~~~~a~~~~-~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~--~~~~~~~l~~~~~ 124 (225)
T 2vq2_A 54 YLKVNDKAQESFRQALSIK-PDS----AEINNNYGWFLCGRLNRPAESMAYFDKALA-D-PTYPT--PYIANLNKGICSA 124 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S-TTCSC--HHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHhC-CCC----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C-cCCcc--hHHHHHHHHHHHH
Confidence 3567899999999999876 322 23567789999999 999999999999877 2 21111 1222333333333
Q ss_pred cCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 122 TSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
...+.+. -.+...++++...+. ...-..++.+++.++++..+-..+.+.....
T Consensus 125 ~~~~~~~---A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 125 KQGQFGL---AEAYLKRSLAAQPQF---PPAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp HTTCHHH---HHHHHHHHHHHSTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHH---HHHHHHHHHHhCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3333333 234444444433221 2344678999999999999999999887763
No 85
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=92.32 E-value=1.9 Score=41.56 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
..+.++|++.|++.++..++.. .+...++.++.+.|++++..+.|++++.
T Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 420 EGEHDQAISAYTTAARLFQGTH-----LPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HTCHHHHHHHHHHHHHTTTTCS-----HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCccch-----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456677777776665542111 2233455566666666666666666554
No 86
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=92.27 E-value=2.8 Score=31.49 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=46.6
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
...+.++|++.|+++++.. + ...+.-.++..++.+++++|++++....|++++..-
T Consensus 14 ~~~~~~~A~~~~~~~~~~~-p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~ 69 (129)
T 2xev_A 14 KNGKYDDASQLFLSFLELY-P-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY 69 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHC-S-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHHHHHHHC-C-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4567899999999999876 2 234666788899999999999999999999987754
No 87
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=92.06 E-value=2 Score=34.35 Aligned_cols=105 Identities=18% Similarity=0.158 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccc------------hhhHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q psy3481 69 GFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVT------------RNYSEKSINSILDYISTSKNMELLQDFYETT 136 (340)
Q Consensus 69 ~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~------------k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~ 136 (340)
.-.++++....+++.|+|++.+..|++.+..+..... .........++-.-.....+. ++-.+.+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~---~~A~~~~ 86 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDL---HEAEETS 86 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHHHHH
Confidence 3467889999999999999999999999987522110 001111111111111111111 2234444
Q ss_pred HHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 137 LEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 137 ~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
..+|+.. .-+.++-.+++.+++.++++..+-..+.+...-
T Consensus 87 ~~al~~~---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 87 SEVLKRE---ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcC---CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4444432 233455678899999999999999999887766
No 88
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=91.97 E-value=4.8 Score=36.05 Aligned_cols=159 Identities=8% Similarity=0.047 Sum_probs=98.1
Q ss_pred hccccc-cccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHH
Q psy3481 36 YYNSKA-LKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSIN 114 (340)
Q Consensus 36 y~~ak~-~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~ 114 (340)
+..|.. +...++++|++.|++.+..+ ++. -.++-.+..++.++|++++....|++++..- + +......+
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-p----~~~~~~~~ 190 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLS-NQN----GEIGLLLAETLIALNRSEDAEAVLXTIPLQD-Q----DTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT-TSC----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-C----SHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC-Ccc----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-c----chHHHHHH
Confidence 444444 34678899999999999987 332 2578889999999999999999998875532 2 23344444
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhc-cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCcccccccc
Q psy3481 115 SILDYISTSKNMELLQDFYETTLEALKDA-KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGT 193 (340)
Q Consensus 115 ~ild~~~~~~~~~~~~~~~~~~~~~~~~~-~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~ 193 (340)
..+.+.......+. .+...++++-. .+-. +-..|+.++..++++..+-..+.++...- |... +.
T Consensus 191 ~~~~l~~~~~~~~a----~~~l~~al~~~P~~~~----~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~-~~---- 255 (287)
T 3qou_A 191 AQIELLXQAADTPE----IQQLQQQVAENPEDAA----LATQLALQLHQVGRNEEALELLFGHLRXD--LTAA-DG---- 255 (287)
T ss_dssp HHHHHHHHHTSCHH----HHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGG-GG----
T ss_pred HHHHHHhhcccCcc----HHHHHHHHhcCCccHH----HHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccc-cc----
Confidence 44444433222222 23334444433 2223 33678999999999999999999988873 3321 11
Q ss_pred chhHHHHHHHHHHHhhhchHHHHHHHHhh
Q psy3481 194 QLLEIYALEIQMYTAQKNNKKLKKLYEQS 222 (340)
Q Consensus 194 llleV~aleI~~~~~l~n~~~l~~~~~~~ 222 (340)
++...-..++..+++.......|+.+
T Consensus 256 ---~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 256 ---QTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp ---HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 12222234455566655555555544
No 89
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=91.81 E-value=2.6 Score=32.93 Aligned_cols=60 Identities=17% Similarity=0.255 Sum_probs=48.6
Q ss_pred hhhhhhccccccccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 31 DLENQYYNSKALKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 31 ~lEn~y~~ak~~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
+|-|.||.. .+.++|++.|++.++.+ ++. ..++-.+..++.++|++++.++.+++.+..-
T Consensus 13 ~lG~~~~~~-----~~~~~A~~~y~~Al~~~-p~~----~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~ 72 (127)
T 4gcn_A 13 DLGNAAYKQ-----KDFEKAHVHYDKAIELD-PSN----ITFYNNKAAVYFEEKKFAECVQFCEKAVEVG 72 (127)
T ss_dssp HHHHHHHHT-----TCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-----CCHHHHHHHHHHHHHhC-CCC----HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 356777764 46789999999999987 332 3467789999999999999999999998754
No 90
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=91.78 E-value=4.8 Score=42.19 Aligned_cols=119 Identities=9% Similarity=0.137 Sum_probs=80.7
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS 123 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~ 123 (340)
..+.++|++.|++.++.. ++. ..++-.+..++.++|+++++++.|++.+..- +.-.. ..+++=..+...
T Consensus 22 ~G~~~eAi~~~~kAl~l~-P~~----~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~-----a~~nLg~~l~~~ 90 (723)
T 4gyw_A 22 QGNIEEAVRLYRKALEVF-PEF----AAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFAD-----AYSNMGNTLKEM 90 (723)
T ss_dssp TTCHHHHHHHHHHHHHHC-SCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----HHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHHc
Confidence 356789999999999987 332 3578899999999999999999999998743 43322 223333333333
Q ss_pred CChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 124 KNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
.+.+.. .+...++|+-..+ ...+-..|+.++..++++..+-..+.+....
T Consensus 91 g~~~~A---~~~~~kAl~l~P~---~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 91 QDVQGA---LQCYTRAIQINPA---FADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp TCHHHH---HHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333322 3333344443222 2334467899999999999999999887765
No 91
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=91.53 E-value=2.5 Score=38.56 Aligned_cols=117 Identities=12% Similarity=0.121 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCC
Q psy3481 45 DDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSK 124 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~ 124 (340)
.+.++|++.|++.++.. ++.. .++..++.++.+.|++++..+.|++.+... +. .....+.+........
T Consensus 251 g~~~~A~~~~~~al~~~-p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~-----~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 251 GLIDLAIDTYRRAIELQ-PHFP----DAYCNLANALKEKGSVAEAEDCYNTALRLC-PT-----HADSLNNLANIKREQG 319 (388)
T ss_dssp TCHHHHHHHHHHHHHTC-SSCH----HHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHhhC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cc-----cHHHHHHHHHHHHHcC
Confidence 34455666666655544 2111 134455566666666666666666655432 11 1122233333332222
Q ss_pred ChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHh
Q psy3481 125 NMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQ 178 (340)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~ 178 (340)
+.+. -.+...++++...+ ...+...|+.++...+++..+-..+.+...
T Consensus 320 ~~~~---A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 320 NIEE---AVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp CHHH---HHHHHHHHTTSCTT---CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CHHH---HHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2222 22233333332211 122345677788888888888888777765
No 92
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=91.39 E-value=1 Score=33.98 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=40.9
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
..+.++|++.|++.+... ++. ..++..+..++.++|++++....|++.+..-
T Consensus 32 ~g~~~~A~~~~~~al~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 32 HEQFDAALPHLRAALDFD-PTY----SVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHC-CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 457789999999999876 322 2356788899999999999999998887754
No 93
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=91.35 E-value=8.8 Score=36.10 Aligned_cols=152 Identities=9% Similarity=0.047 Sum_probs=97.9
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS 123 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~ 123 (340)
..++++|++.|++.++.. +. ..++..+..++.+.|++++..+.|++.+..- +..+ .....+-......
T Consensus 256 ~~~~~~A~~~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH-PT-----PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYP-----PTYYHRGQMYFIL 323 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC-CC-----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHhcC-CC-----chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCH-----HHHHHHHHHHHhc
Confidence 457789999999999876 22 4677889999999999999999999998754 3222 2233333333333
Q ss_pred CChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHH
Q psy3481 124 KNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEI 203 (340)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI 203 (340)
.+.+.. .+...++++...+. ..+-..++.+++.++++..+-..+.+..... |... ++...-.
T Consensus 324 ~~~~~A---~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~----------~~~~~l~ 385 (537)
T 3fp2_A 324 QDYKNA---KEDFQKAQSLNPEN---VYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLP----------EVPTFFA 385 (537)
T ss_dssp TCHHHH---HHHHHHHHHHCTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCT----------HHHHHHH
T ss_pred CCHHHH---HHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCh----------HHHHHHH
Confidence 333333 34444444433221 1234568999999999999999999888764 3311 1222223
Q ss_pred HHHHhhhchHHHHHHHHhhhhh
Q psy3481 204 QMYTAQKNNKKLKKLYEQSLHI 225 (340)
Q Consensus 204 ~~~~~l~n~~~l~~~~~~~~~i 225 (340)
.++...++.......|..+...
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHc
Confidence 4566677877777777766443
No 94
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=91.31 E-value=6.6 Score=33.90 Aligned_cols=181 Identities=13% Similarity=0.075 Sum_probs=96.2
Q ss_pred Cccchhhhhhcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccc
Q psy3481 27 EPDVDLENQYYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVT 105 (340)
Q Consensus 27 ~~~~~lEn~y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~ 105 (340)
.|..+.+.-|..|..+ ...+.++|++.|+++++.. ++ ...++..++.++.+.|++++..+.+++.+..- +.-.
T Consensus 16 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 89 (327)
T 3cv0_A 16 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PE----REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDI 89 (327)
T ss_dssp CGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred cchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCH
Confidence 3445566666666654 3567889999999998866 22 22455567788888888888888888776643 2111
Q ss_pred h------------h---hHHHHHHHHHHHhhcCCCh----------------------hHHHHHHHHHHHHHhhccc-hh
Q psy3481 106 R------------N---YSEKSINSILDYISTSKNM----------------------ELLQDFYETTLEALKDAKN-DR 147 (340)
Q Consensus 106 k------------~---~~~k~i~~ild~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~-~r 147 (340)
. . .+.+..+..+......... -.....++.+++.++.+-. ..
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 169 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence 1 1 1222222333211000000 0001123333333332210 00
Q ss_pred hhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHHHHHhhhchHHHHHHHHhhhhh
Q psy3481 148 LWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHI 225 (340)
Q Consensus 148 lf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~~i 225 (340)
--..+-..++.+++..+++..+-..+.+..... |.. + .+...-..++...++.......+..+...
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~---~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDD---A-------QLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC---H-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCc---H-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 012344667888888899988888888877653 321 0 12222233455667777766666665443
No 95
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=91.30 E-value=6.1 Score=33.50 Aligned_cols=163 Identities=20% Similarity=0.169 Sum_probs=96.4
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHh-h
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYI-S 121 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~-~ 121 (340)
...+.++|+..|++.+..+ ++. -.++..+..++.++|++++....|++.+..- |.-+..+.... .+.-.. .
T Consensus 17 ~~g~~~~A~~~~~~al~~~-p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg--~~~~~~~~ 88 (217)
T 2pl2_A 17 ALGRYDAALTLFERALKEN-PQD----PEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS--EAYVALYR 88 (217)
T ss_dssp HTTCHHHHHHHHHHHHTTS-SSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH--HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH--HHHHHhhh
Confidence 3467899999999999987 332 2467788999999999999999999998754 43222221111 011100 0
Q ss_pred cCCChhHHHHHHHHHHHHHhhcc-chhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHH
Q psy3481 122 TSKNMELLQDFYETTLEALKDAK-NDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYA 200 (340)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~-~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~a 200 (340)
...........++..+++++.+- -+--...+-..++.+++.++++...-..+.+....- .+ + ++..
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~----~-------~~~~ 155 (217)
T 2pl2_A 89 QAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT----P-------EIRS 155 (217)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC----H-------HHHH
T ss_pred hhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc----h-------HHHH
Confidence 01111111123444444443321 011122334578999999999999999999887764 22 1 1222
Q ss_pred HHHHHHHhhhchHHHHHHHHhhhhhh
Q psy3481 201 LEIQMYTAQKNNKKLKKLYEQSLHIK 226 (340)
Q Consensus 201 leI~~~~~l~n~~~l~~~~~~~~~i~ 226 (340)
.--.++..+++.......|..+....
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 12234666777777777777765543
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=91.26 E-value=4.1 Score=34.70 Aligned_cols=130 Identities=9% Similarity=0.024 Sum_probs=74.6
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhh------------------hcCHHHHHHHHHHHHHHhhhccc
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFK------------------LSNYKEMMSRYKQLLLYIKSAVT 105 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~------------------~~~~~~~~~~~~~l~~~~~~~v~ 105 (340)
..+.++|++.|+++++..+ + ....-.|+-.+..++.+ +|++++.+..|++++.-. |.-.
T Consensus 54 ~~~~~~A~~~~~~~l~~~P-~-~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~ 130 (225)
T 2yhc_A 54 NADLPLAQAAIDRFIRLNP-T-HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQ 130 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCT-T-CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCT
T ss_pred cCCHHHHHHHHHHHHHHCc-C-CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCCh
Confidence 4678999999999998763 2 12233455555555554 678999999999987754 3222
Q ss_pred hhh-HHHHHHHHHHHhh-----------cCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHH
Q psy3481 106 RNY-SEKSINSILDYIS-----------TSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRIL 173 (340)
Q Consensus 106 k~~-~~k~i~~ild~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l 173 (340)
.+. +.+-+..+...+. ...+. .+-.+...++++...+...--.+-..++.+++.+++...+-..+
T Consensus 131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~---~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 131 YTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW---VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH---HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 221 1111222211110 01111 11222233333333222222245578899999999999999999
Q ss_pred HHHHhh
Q psy3481 174 KQLHQS 179 (340)
Q Consensus 174 ~~lH~~ 179 (340)
..+-..
T Consensus 208 ~~l~~~ 213 (225)
T 2yhc_A 208 KIIAAN 213 (225)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 887655
No 97
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=91.22 E-value=3.2 Score=32.52 Aligned_cols=97 Identities=11% Similarity=0.118 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhH
Q psy3481 71 KALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWF 150 (340)
Q Consensus 71 ka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~ 150 (340)
.+.++....++++|+|++.++.|++.+..- +.-...+ ..+-.......+.+ +-.+.+..+|+-.. -+.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~-----~~~~~~~~~~~~~~---~A~~~~~~al~~~p---~~~ 81 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILY-----SNRAACLTKLMEFQ---RALDDCDTCIRLDS---KFI 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH-----HHHHHHHHHTTCHH---HHHHHHHHHHHHCT---TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH-----HHHhhHHHhhccHH---HHHHHHHHHHHhhh---hhh
Confidence 356778899999999999999999998754 3322222 22222222222222 23444445554322 223
Q ss_pred hHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 151 KTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 151 k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
.+-..++.+++.++++..+-..+.+...-
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34467899999999999999999888765
No 98
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=91.12 E-value=0.92 Score=34.29 Aligned_cols=56 Identities=9% Similarity=0.014 Sum_probs=46.1
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
...+.++|++.|+++++.. ++ ..+.-.++..+..++.++|++++....|++++...
T Consensus 51 ~~~~~~~A~~~~~~~~~~~-p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 51 ATRNFQLAEAQFRDLVSRY-PT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HhccHHHHHHHHHHHHHHC-CC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4567899999999999876 22 23456788899999999999999999999988754
No 99
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=90.98 E-value=1.9 Score=34.85 Aligned_cols=121 Identities=12% Similarity=0.129 Sum_probs=76.1
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHH-hhc
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDY-IST 122 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~-~~~ 122 (340)
..+.++|++.|++.+... ++. ..++..+..++...|++++....|++.+..- +.-+ .....+-.. ...
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~-----~~~~~la~~l~~~ 91 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQN----SEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENA-----ELYAALATVLYYQ 91 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCH-----HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCH-----HHHHHHHHHHHHh
Confidence 345577999999998876 322 2467888999999999999999999998755 3221 122222222 212
Q ss_pred CCCh--hHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcC
Q psy3481 123 SKNM--ELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 181 (340)
Q Consensus 123 ~~~~--~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~k 181 (340)
..+. +. -.+...++++...+. ..+-..++.+++.++++..+...+.++.....
T Consensus 92 ~~~~~~~~---A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 92 ASQHMTAQ---TRAMIDKALALDSNE---ITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp TTTCCCHH---HHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred cCCcchHH---HHHHHHHHHHhCCCc---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 2221 22 234444444433221 12335689999999999999999999887743
No 100
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=90.68 E-value=11 Score=36.37 Aligned_cols=50 Identities=18% Similarity=0.062 Sum_probs=39.5
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCH-HHHHHHHHHHHHHh
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNY-KEMMSRYKQLLLYI 100 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~-~~~~~~~~~l~~~~ 100 (340)
..++|++.++++.... + ..-.++..+.+++..+|++ ++..+.|++.+..-
T Consensus 83 ~~~~al~~l~~~~~~~-~----~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~ 133 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-Q----VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE 133 (474)
T ss_dssp HHHHHHHHHHHHHTTC-C----CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccC-c----hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC
Confidence 3578888888877655 2 3345778889999999999 99999999988753
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=90.68 E-value=6.1 Score=38.72 Aligned_cols=153 Identities=10% Similarity=-0.006 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCC
Q psy3481 45 DDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSK 124 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~ 124 (340)
.+.++|++.|++.++.+ ++. ..++..+..++.++|++++..+.|++.+..- +.-. .....+-.......
T Consensus 3 g~~~~A~~~~~~al~~~-p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~-----~~~~~lg~~~~~~g 71 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQD----FVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHP-----EAVARLGRVRWTQQ 71 (568)
T ss_dssp -------------------CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCH-----HHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHCC
Confidence 45678888888888776 222 2467788888888899999988888887643 2211 12222222222223
Q ss_pred ChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHHHH
Q psy3481 125 NMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQ 204 (340)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~aleI~ 204 (340)
+.+.. .+...++++...+. ...-..|+.+++.++++..+-..+.+..... |.. . .+...-..
T Consensus 72 ~~~~A---~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~------~----~~~~~l~~ 133 (568)
T 2vsy_A 72 RHAEA---AVLLQQASDAAPEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEE------P----YITAQLLN 133 (568)
T ss_dssp CHHHH---HHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC------H----HHHHHHHH
T ss_pred CHHHH---HHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC------H----HHHHHHHH
Confidence 33222 33333444333221 2233567888888899888888888877663 321 0 11221223
Q ss_pred HHHhh---hchHHHHHHHHhhhhhh
Q psy3481 205 MYTAQ---KNNKKLKKLYEQSLHIK 226 (340)
Q Consensus 205 ~~~~l---~n~~~l~~~~~~~~~i~ 226 (340)
++..+ ++.......+..+....
T Consensus 134 ~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 134 WRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhhccccHHHHHHHHHHHHhcC
Confidence 45556 66666666666664433
No 102
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=90.57 E-value=4.1 Score=30.20 Aligned_cols=52 Identities=10% Similarity=0.132 Sum_probs=40.1
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
..+.++|++.|++.++.. ++. ..++..++.++.++|++++....+++.+..-
T Consensus 29 ~~~~~~A~~~~~~al~~~-~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 29 KGDYPQAMKHYTEAIKRN-PKD----AKLYSNRAACYTKLLEFQLALKDCEECIQLE 80 (133)
T ss_dssp TTCSHHHHHHHHHHHTTC-TTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHcC-CCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 456788999999988776 222 4567788888999999999998888887643
No 103
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=90.53 E-value=6.6 Score=33.15 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=24.3
Q ss_pred HhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 150 FKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 150 ~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
..+...++.+++.++++..+-..+.+....
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 345577888999999999999888888765
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=90.29 E-value=0.83 Score=37.92 Aligned_cols=64 Identities=8% Similarity=0.047 Sum_probs=46.9
Q ss_pred hhhhhcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 32 LENQYYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 32 lEn~y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
.+-.|.-+..+ ...+.++|++.|++++..++.. ..+...+..++.++|++++.+..|++.+..-
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-----VDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 33344444443 3567899999999999887322 2356678889999999999999999988754
No 105
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=90.26 E-value=4.2 Score=29.77 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
..+.++|++.|++.+... +.. ..++..++.++.++|++++..+.+.+.+..-
T Consensus 25 ~~~~~~A~~~~~~~~~~~-~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 76 (131)
T 2vyi_A 25 VENFEAAVHFYGKAIELN-PAN----AVYFCNRAAAYSKLGNYAGAVQDCERAICID 76 (131)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC
Confidence 457789999999998876 322 3467788899999999999999999887753
No 106
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=89.58 E-value=11 Score=33.80 Aligned_cols=153 Identities=13% Similarity=0.178 Sum_probs=85.4
Q ss_pred chhhhhhccccccccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhH
Q psy3481 30 VDLENQYYNSKALKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYS 109 (340)
Q Consensus 30 ~~lEn~y~~ak~~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~ 109 (340)
+++.|.||.. +..+|++.++++.... ++ -...+..-+.+.+..+|++++++..++. . ....
T Consensus 4 ~~~~~~~~~g------~y~~ai~~~~~~~~~~-p~---~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~--~~~~ 64 (291)
T 3mkr_A 4 FDVKNAFYIG------SYQQCINEAQRVKPSS-PE---RDVERDVFLYRAYLAQRKYGVVLDEIKP-------S--SAPE 64 (291)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHSCCCS-HH---HHHHHHHHHHHHHHHTTCHHHHHHHSCT-------T--SCHH
T ss_pred hHHHHHHHHH------HHHHHHHHHHhcccCC-ch---hhHHHHHHHHHHHHHCCCHHHHHHHhcc-------c--CChh
Confidence 5688888875 5788999998876655 22 2334445567899999999988865433 1 1223
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc-cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccc
Q psy3481 110 EKSINSILDYISTSKNMELLQDFYETTLEALKDA-KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDD 188 (340)
Q Consensus 110 ~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~-~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~ 188 (340)
-..++.+.+++....+.+. -++...+.++.. ..+. ......++.++...+++..+-..+.+ |..
T Consensus 65 ~~a~~~la~~~~~~~~~~~---A~~~l~~ll~~~~~P~~--~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~--- 129 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDA---IVAELDREMSRSVDVTN--TTFLLMAASIYFYDQNPDAALRTLHQ-------GDS--- 129 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHH---HHHHHHHHHHSCCCCSC--HHHHHHHHHHHHHTTCHHHHHHHHTT-------CCS---
T ss_pred HHHHHHHHHHHcCCCcHHH---HHHHHHHHHhcccCCCC--HHHHHHHHHHHHHCCCHHHHHHHHhC-------CCC---
Confidence 4566666666665433322 233333333221 1111 12235566777777777776666655 321
Q ss_pred cccccchhHHHHHHHHHHHhhhchHHHHHHHHhhh
Q psy3481 189 LKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSL 223 (340)
Q Consensus 189 ~~~~~llleV~aleI~~~~~l~n~~~l~~~~~~~~ 223 (340)
.++...-.+++..+++.......+....
T Consensus 130 -------~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 130 -------LECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1233333445555666666555555553
No 107
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=89.29 E-value=5 Score=37.34 Aligned_cols=125 Identities=9% Similarity=0.069 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccch-hhHHHHHHHHHHHhhc
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTR-NYSEKSINSILDYIST 122 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k-~~~~k~i~~ild~~~~ 122 (340)
..+.++|++.|+++++.. +... .++..++.++.+.|++++....|++.+... +.... .........+-.....
T Consensus 351 ~~~~~~A~~~~~~~~~~~-~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKF-PEAP----EVPNFFAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCS----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHc-ccCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhh
Confidence 457899999999999876 3222 356788999999999999999999998755 32211 0001122333333333
Q ss_pred ---CCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 123 ---SKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 123 ---~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
..+.+ +-.+...++++...+ ...+...++.++..++++..+-..+.+.....
T Consensus 425 ~~~~~~~~---~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 425 NPTVENFI---EATNLLEKASKLDPR---SEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SCCTTHHH---HHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhcCCHH---HHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 22222 233334444443322 12344678999999999999999999988874
No 108
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.03 E-value=0.37 Score=49.21 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=36.6
Q ss_pred hhhhhcccccccccchhHHHhhhccCC--CCCcchHHHHHHHHHhcC
Q psy3481 296 GGKMHLREGEFEKAHTDFFEAFKNYDE--SGSPRRTTCLKYLVLANM 340 (340)
Q Consensus 296 YG~rhS~~~~~~~~~~~F~eaF~~yde--~g~~~~~~~LKYl~L~~~ 340 (340)
.|+.+...+++..|+..|.+||+.-.. .....++.|+||+|+|+|
T Consensus 276 ~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~L 322 (523)
T 4b4t_S 276 LSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQL 322 (523)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHh
Confidence 388888999999999999999986432 233578999999999874
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=88.77 E-value=8.4 Score=31.23 Aligned_cols=153 Identities=12% Similarity=0.084 Sum_probs=90.1
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
...+.++|++.|++++..+ ++. -.++..+..++.++|++++....+++.+..- + .. .. ......+.....
T Consensus 18 ~~g~~~~A~~~~~~al~~~-P~~----~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p--~~-~~-~~~~~~~~~~~~ 87 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDEL-QSR----GDVKLAKADCLLETKQFELAQELLATIPLEY-Q--DN-SY-KSLIAKLELHQQ 87 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHH-HTS----HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C--CH-HH-HHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHC-CCc----HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C--Ch-HH-HHHHHHHHHHhh
Confidence 4567899999999999876 322 3567888999999999999999998875532 2 11 11 111111222111
Q ss_pred CCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHH
Q psy3481 123 SKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALE 202 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~llleV~ale 202 (340)
....+ -.+...++++...++ ...-..|+.++..++++...-..+.++...-..+. ++ ++...-
T Consensus 88 ~~~~~----a~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~-------~a~~~l 150 (176)
T 2r5s_A 88 AAESP----ELKRLEQELAANPDN---FELACELAVQYNQVGRDEEALELLWNILKVNLGAQ---DG-------EVKKTF 150 (176)
T ss_dssp HTSCH----HHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT---TT-------HHHHHH
T ss_pred cccch----HHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC---hH-------HHHHHH
Confidence 11111 133344444433221 22336689999999999999999999887643222 10 011111
Q ss_pred HHHHHhhhchHHHHHHHHhh
Q psy3481 203 IQMYTAQKNNKKLKKLYEQS 222 (340)
Q Consensus 203 I~~~~~l~n~~~l~~~~~~~ 222 (340)
..++..+++.......|..+
T Consensus 151 ~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHH
Confidence 23555666666655555544
No 110
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=88.57 E-value=5.7 Score=29.07 Aligned_cols=104 Identities=12% Similarity=0.176 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc-cchhhh
Q psy3481 71 KALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA-KNDRLW 149 (340)
Q Consensus 71 ka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~-~~~rlf 149 (340)
.++..++.++++.|++++....|++.+..- +.- ......+-.......+.+.....++.+++.-... .+....
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTN-----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Ccc-----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 456777888888999999998888887754 221 1222333333322233333222333333222111 112222
Q ss_pred HhHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 150 FKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 150 ~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
..+...++.+++.++++..+...+.+.....
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 4566788999999999999999999888764
No 111
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=88.36 E-value=2 Score=32.64 Aligned_cols=53 Identities=11% Similarity=0.146 Sum_probs=40.3
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
...+.++|++.|++.++.. +.. -.++..+..++.++|++++.+..|++.+..-
T Consensus 16 ~~~~~~~A~~~~~~al~~~-p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 68 (126)
T 3upv_A 16 TKSDWPNAVKAYTEMIKRA-PED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKD 68 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC-CCC----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3457788999999888876 322 2567778888888899999888888887743
No 112
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=88.19 E-value=2.6 Score=33.74 Aligned_cols=53 Identities=6% Similarity=-0.033 Sum_probs=43.6
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
...+.++|++.|++.++.. +.. -.++..+..++.++|++++.+..|++.+..-
T Consensus 23 ~~g~~~~A~~~~~~al~~~-p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 23 ARKEYSKAIDLYTQALSIA-PAN----PIYLSNRAAAYSASGQHEKAAEDAELATVVD 75 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC-CcC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4567899999999999887 322 3577888999999999999999999988754
No 113
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=88.09 E-value=4.5 Score=28.82 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=41.1
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
..+.++|++.|++.++.. +.. ..++..+..+++++|++++....+++.+..
T Consensus 19 ~~~~~~A~~~~~~a~~~~-~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 19 AGNYTESIDLFEKAIQLD-PEE----SKYWLMKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp SCCHHHHHHHHHHHHHHC-CCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHhC-cCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 457799999999999876 322 246678899999999999999999888664
No 114
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=87.85 E-value=1.4 Score=32.20 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=42.9
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
...+.++|++.|++.+... +.. -.++..+..++.++|++++.++.+++.+..-
T Consensus 16 ~~~~~~~A~~~~~~al~~~-p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 16 KQGLYREAVHCYDQLITAQ-PQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHHHhcC-CCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3467899999999999877 322 3567789999999999999999999887643
No 115
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=87.29 E-value=6.1 Score=28.31 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=42.8
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
...+.++|++.|++.+... +.. ..++..++.++.++|++++....+++.+..-
T Consensus 16 ~~~~~~~A~~~~~~~~~~~-~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 68 (118)
T 1elw_A 16 SVGNIDDALQCYSEAIKLD-PHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 68 (118)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HcccHHHHHHHHHHHHHHC-CCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 3567899999999999876 322 3467888899999999999999999887643
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=87.19 E-value=1.4 Score=34.69 Aligned_cols=66 Identities=12% Similarity=0.226 Sum_probs=47.5
Q ss_pred hhhhhccccccccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhh
Q psy3481 32 LENQYYNSKALKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNY 108 (340)
Q Consensus 32 lEn~y~~ak~~~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~ 108 (340)
.-|.|+.. .+.++|++.|++.++.++.. ..++..+..++.++|++++.++.|++.+..- +.-.+++
T Consensus 19 ~G~~~~~~-----g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~ 84 (126)
T 4gco_A 19 KGNEYFKK-----GDYPTAMRHYNEAVKRDPEN-----AILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGY 84 (126)
T ss_dssp HHHHHHHT-----TCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-----HHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHH
Confidence 44555544 56788999999998877322 3466778889999999999999999888754 5444443
No 117
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=86.92 E-value=7.3 Score=28.46 Aligned_cols=52 Identities=13% Similarity=0.248 Sum_probs=43.5
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
..+.++|++.|++.+... +.. ..++..++.++.++|++++....+++.+...
T Consensus 17 ~~~~~~A~~~~~~a~~~~-~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 68 (131)
T 1elr_A 17 KKDFDTALKHYDKAKELD-PTN----MTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68 (131)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-Ccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 457899999999999876 322 3567788999999999999999999998865
No 118
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=86.83 E-value=5.3 Score=39.23 Aligned_cols=57 Identities=7% Similarity=0.150 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHhhccccc---ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhh
Q psy3481 45 DDPKAALQSFQKVLDLES---GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIK 101 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~---~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~ 101 (340)
.+.++|++.+++.++... ++.--..-+++..+..+|..+|+|+++..+|++.+.-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~ 371 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS 371 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 367899999999886432 444567889999999999999999999999999987553
No 119
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=86.73 E-value=1.5 Score=33.32 Aligned_cols=48 Identities=6% Similarity=0.034 Sum_probs=22.4
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
+.++|++.|+++++.. ++. -.++..+..++.++|++++.++.+++.+.
T Consensus 42 ~~~~A~~~~~~al~~~-p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 42 EYRKAEAVLANGVKQF-PNH----QALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp CHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555444 211 22334445555555555555555554443
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=86.72 E-value=7.5 Score=31.95 Aligned_cols=52 Identities=6% Similarity=0.050 Sum_probs=35.9
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
..+.++|++.|++.+..++ +.. .++..+..++.++|++++....|++.+..-
T Consensus 83 ~g~~~~Ai~~~~~al~l~P-~~~----~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 83 KEQFQQAADLYAVAFALGK-NDY----TPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp TTCHHHHHHHHHHHHHHSS-SCC----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HccHHHHHHHHHHHHhhCC-CCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4566778888888777763 221 255677777788888888888887777654
No 121
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=86.65 E-value=11 Score=36.71 Aligned_cols=99 Identities=7% Similarity=-0.015 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHhhccccc---ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccch--hhHHHHHHHHHHH
Q psy3481 45 DDPKAALQSFQKVLDLES---GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTR--NYSEKSINSILDY 119 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~---~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k--~~~~k~i~~ild~ 119 (340)
.+.++|++.+++.++... ++.--..-+++..+..+|..+|+|+++..+|++.+.-.+...+. ..++.+.+++=..
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~ 380 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKL 380 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHH
Confidence 356899999999987543 45557899999999999999999999999999999866443333 2345555555554
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhc
Q psy3481 120 ISTSKNMELLQDFYETTLEALKDA 143 (340)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ 143 (340)
.......+.....|+.+++.++..
T Consensus 381 ~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 381 QLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHh
Confidence 444444455555666666665543
No 122
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=86.60 E-value=1.9 Score=30.27 Aligned_cols=51 Identities=24% Similarity=0.402 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
..+.++|++.|++.++.. +.. ..++..+..++.++|++++....+++.+..
T Consensus 22 ~~~~~~A~~~~~~a~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 22 QGDYDEAIEYYQKALELD-PNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcC-CCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 467899999999999876 322 346778999999999999999999998774
No 123
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=86.59 E-value=4.4 Score=34.18 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=42.4
Q ss_pred ccCCHHHHHHHHHhhcccccccchh-hHH-----------HHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGE-WGF-----------KALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~-w~f-----------ka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
...+.++|++.|++.+..++ +..+ |.. +...++..++.++|++++....|++.+..-
T Consensus 16 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 16 EAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 45678999999999998873 2222 211 122338899999999999999999998754
No 124
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=86.41 E-value=8.5 Score=36.34 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhc-----------cchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy3481 71 KALKQMIKINFKLSNYKEMMSRYKQLLLYIKSA-----------VTRNYSEKSINSILDYISTSKNMELLQDFYETTLEA 139 (340)
Q Consensus 71 ka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~-----------v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~ 139 (340)
.+++++...++++|++++++..|++.+.+.... ... .......++-.......+. ++-.+.+.++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~g~~---~~A~~~~~~a 299 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-VALSCVLNIGACKLKMSDW---QGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHHHHHHHHTTCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH-HHHHHHHHHHHHHHhccCH---HHHHHHHHHH
Confidence 457888899999999999999999999866321 111 1112222222222222222 2334445555
Q ss_pred HhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 140 LKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 140 ~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
|+-.. -..++..+++.+++.++++..+-..+.+....
T Consensus 300 l~~~p---~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 300 LEIDP---SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCc---hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 54332 23445578999999999999999999988876
No 125
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.32 E-value=1.8 Score=33.22 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 47 PKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 47 ~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
.++|.+.|++.+..+ + -.-+|+-.+..+++++|+|++...++++++.--
T Consensus 25 ~~~A~~~l~~AL~~d-p----~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-P----YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHC-T----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHC-c----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 589999999999987 2 345788888999999999999999999998755
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=86.12 E-value=10 Score=34.95 Aligned_cols=114 Identities=15% Similarity=0.089 Sum_probs=69.3
Q ss_pred ccCCHHHHHHHHHhhcccccccc----------hhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHH
Q psy3481 43 KEDDPKAALQSFQKVLDLESGER----------GEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKS 112 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~----------~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~ 112 (340)
+..+.++|++.|++.+...+... ......++..+..++.++|++++++..|++.+..- +.-.+++
T Consensus 159 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~---- 233 (336)
T 1p5q_A 159 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGL---- 233 (336)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH----
T ss_pred HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH----
Confidence 35678999999999998763221 12335788889999999999999999999998854 4333322
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhc-cchhhhHhHHhHHHHhhhcccchHHH
Q psy3481 113 INSILDYISTSKNMELLQDFYETTLEALKDA-KNDRLWFKTNTKLGKLYFDREDFNKL 169 (340)
Q Consensus 113 i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~-~~~rlf~k~n~kL~~l~~~m~~~~~l 169 (340)
..+-.......+.+.. .+...++++-. .+.. +...|+.++..++++...
T Consensus 234 -~~lg~~~~~~g~~~~A---~~~~~~al~l~P~~~~----a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 234 -SRRGEAHLAVNDFELA---RADFQKVLQLYPNNKA----AKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -HHHHHHHHHTTCHHHH---HHHHHHHHHHCSSCHH----HHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHCCCHHHH---HHHHHHHHHHCCCCHH----HHHHHHHHHHHHHHHHHH
Confidence 2222222233333332 33334444433 2322 234566677766666655
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=86.05 E-value=4.8 Score=31.56 Aligned_cols=64 Identities=17% Similarity=0.109 Sum_probs=47.0
Q ss_pred hhhhhcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 32 LENQYYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 32 lEn~y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
.+..|..|..+ ...+.++|++.|++++..++.. ..++..+..++.++|++++....|++.+..-
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-----ARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 33344444443 4567899999999999877322 2345678889999999999999999988753
No 128
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=85.97 E-value=15 Score=35.86 Aligned_cols=120 Identities=11% Similarity=-0.027 Sum_probs=77.2
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS 123 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~ 123 (340)
..+.++|++.|++.++.. ++. ..++..+..++.++|++++..+.|++.+..- +.- ......+-......
T Consensus 36 ~g~~~~A~~~~~~al~~~-p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~-----~~~~~~la~~~~~~ 104 (568)
T 2vsy_A 36 MGDTTAGEMAVQRGLALH-PGH----PEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEH-----PGIALWLGHALEDA 104 (568)
T ss_dssp HTCHHHHHHHHHHHHTTS-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----HHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC-----HHHHHHHHHHHHHc
Confidence 467899999999999987 322 3577889999999999999999999998753 322 22223333333333
Q ss_pred CChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcc---cchHHHHHHHHHHHhhc
Q psy3481 124 KNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDR---EDFNKLSRILKQLHQSC 180 (340)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m---~~~~~lp~~l~~lH~~~ 180 (340)
.+.+.. .+...++++-..+. ..+-..|+.++..+ +++..+-..+.+.....
T Consensus 105 g~~~~A---~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 105 GQAEAA---AAAYTRAHQLLPEE---PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp TCHHHH---HHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred CCHHHH---HHHHHHHHHhCCCC---HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 333332 33333444333221 12345688888888 88888877777766553
No 129
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=85.97 E-value=3.7 Score=38.26 Aligned_cols=130 Identities=11% Similarity=0.080 Sum_probs=74.8
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHH--HHHHHHHhh--
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKS--INSILDYIS-- 121 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~--i~~ild~~~-- 121 (340)
+.++|++.|++.+... +.. ..++..+..++.+.|++++..+.|++.+..- +..+..+.... -+.......
T Consensus 228 ~~~~a~~~~~~al~~~-~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKA-PGV----TDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp --CHHHHHHHHHHHHC-SSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC-ccH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhH
Confidence 3456777777777655 211 2355678899999999999999999988754 43222221111 011111111
Q ss_pred ---cCCChhHHHHHHHHHHHHHhhccc-hhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcC
Q psy3481 122 ---TSKNMELLQDFYETTLEALKDAKN-DRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 181 (340)
Q Consensus 122 ---~~~~~~~~~~~~~~~~~~~~~~~~-~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~k 181 (340)
...........++...+.++.+.. +.-...+-..++.++..++++..+-..+.+....-.
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 111122223345555554443321 223333446789999999999999999998876543
No 130
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=85.89 E-value=6 Score=41.39 Aligned_cols=118 Identities=13% Similarity=0.116 Sum_probs=76.0
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS 123 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~ 123 (340)
..+.++|++.|++.++.+ ++. -.++..+..++.++|+++++.+.|++.+..- +.-.. ..+++=......
T Consensus 56 ~g~~~eA~~~~~~Al~l~-P~~----~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~-----a~~~Lg~~~~~~ 124 (723)
T 4gyw_A 56 QGKLQEALMHYKEAIRIS-PTF----ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFAD-----AHSNLASIHKDS 124 (723)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----HHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHHc
Confidence 456799999999999987 332 3478899999999999999999999998743 43322 223333333333
Q ss_pred CChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHh
Q psy3481 124 KNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQ 178 (340)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~ 178 (340)
.+.+. -.+...++|+-..+ +..+-..|+.++..++++..+-..+.++..
T Consensus 125 g~~~e---Ai~~~~~Al~l~P~---~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 125 GNIPE---AIASYRTALKLKPD---FPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp TCHHH---HHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CCHHH---HHHHHHHHHHhCCC---ChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 33333 23444444443322 122335688888888888877766665543
No 131
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=85.72 E-value=19 Score=32.21 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=24.3
Q ss_pred CHHHHHHHHHhhccccc-ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q psy3481 46 DPKAALQSFQKVLDLES-GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQ 95 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~-~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~ 95 (340)
+.++|++.+++++..+. ++... ++-.+..++.++|+++++++.+++
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~----~~~~la~~~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTT----FLLMAASIYFYDQNPDAALRTLHQ 126 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHH----HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhcccCCCCHH----HHHHHHHHHHHCCCHHHHHHHHhC
Confidence 45666666666654321 22222 234455566666666666666554
No 132
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=85.46 E-value=12 Score=29.66 Aligned_cols=102 Identities=18% Similarity=0.087 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccch
Q psy3481 67 EWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKND 146 (340)
Q Consensus 67 ~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (340)
.-.-.++..+..+++++|++++..+.|++.+..- +.-. .....+-.......+.+. -.+.+.++++-..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~-----~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~p~- 77 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANP-----IYLSNRAAAYSASGQHEK---AAEDAELATVVDPK- 77 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH-----HHHHHHHHHHHHTTCHHH---HHHHHHHHHHHCTT-
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCH-----HHHHHHHHHHHHccCHHH---HHHHHHHHHHhCCC-
Confidence 3455678889999999999999999999998754 3222 222222222222233222 23444444443322
Q ss_pred hhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 147 RLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 147 rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
...+-..++.+++.++++..+-..+.+.....
T Consensus 78 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 78 --YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 23445678999999999999999999887764
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=85.20 E-value=7.1 Score=31.32 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=46.4
Q ss_pred hhcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 35 QYYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 35 ~y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
.|..+..+ ...+.++|++.|++++..++.. ..++..+..++.++|++++....|++.+..-
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-----SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCccc-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444443 4567899999999999887322 2345678999999999999999999998754
No 134
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=85.20 E-value=11 Score=30.99 Aligned_cols=104 Identities=15% Similarity=0.043 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccc------hhhH-----HHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy3481 69 GFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVT------RNYS-----EKSINSILDYISTSKNMELLQDFYETTL 137 (340)
Q Consensus 69 ~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~------k~~~-----~k~i~~ild~~~~~~~~~~~~~~~~~~~ 137 (340)
.-.++.++...++++|+++++...|++.+... +.-+ -... ......+-.......+.+ +-.+.+.
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~---~A~~~~~ 112 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYP---KAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHH---HHHHHHH
Confidence 34567788889999999999999999998765 2211 0000 112222222222222222 2233344
Q ss_pred HHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 138 EALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 138 ~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
.+++... -..++-..++.+++.++++..+-..+.+....
T Consensus 113 ~al~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 113 KVLKIDK---NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHST---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCc---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4443322 12344567899999999999999999988766
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=84.70 E-value=5.3 Score=32.09 Aligned_cols=53 Identities=9% Similarity=-0.039 Sum_probs=43.4
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
...+.++|++.|++++...+ +.. .++-.+..++.++|++++....|++.+..-
T Consensus 67 ~~g~~~~A~~~~~~al~l~p-~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 67 AMGQYDLAIHSYSYGAVMDI-XEP----RFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CCc----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34678999999999998873 222 356788999999999999999999988765
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=84.35 E-value=10 Score=27.88 Aligned_cols=104 Identities=12% Similarity=0.082 Sum_probs=69.4
Q ss_pred cchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q psy3481 64 ERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA 143 (340)
Q Consensus 64 ~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (340)
........++..++.++.+.|++++....|++.+..- +. .......+-.......+.+. -.+...++++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~-----~~~~~~~la~~~~~~~~~~~---A~~~~~~a~~~~ 80 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PK-----DAKLYSNRAACYTKLLEFQL---ALKDCEECIQLE 80 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TT-----CHHHHHHHHHHHTTTTCHHH---HHHHHHHHHHHC
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC-----cHHHHHHHHHHHHHhccHHH---HHHHHHHHHHhC
Confidence 4467788999999999999999999999999987643 21 12333333333333333333 233444444433
Q ss_pred cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 144 KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 144 ~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
.+ ...+...++.+++.++++..+-..+.+....
T Consensus 81 ~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 81 PT---FIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC---chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 22 1234467888999999999999999888765
No 137
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=83.87 E-value=7.1 Score=31.97 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=44.4
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
...+.++|++.|++.+... +.. ..++..+..++.++|++++..+.|++.+...
T Consensus 49 ~~g~~~~A~~~~~~al~~~-~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 101 (213)
T 1hh8_A 49 ILKNMTEAEKAFTRSINRD-KHL----AVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 101 (213)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHhC-ccc----hHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 3567899999999999876 322 3577889999999999999999999998854
No 138
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=83.81 E-value=14 Score=29.27 Aligned_cols=63 Identities=11% Similarity=0.143 Sum_probs=46.6
Q ss_pred cCCHHHHHHHHHhhcccc-------cccc------hhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchh
Q psy3481 44 EDDPKAALQSFQKVLDLE-------SGER------GEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRN 107 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~-------~~~~------~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~ 107 (340)
..+.++|++.|++.+..- .+.. ......++-.+..++.++|++++.+..+++.+..- +.-.++
T Consensus 24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a 99 (162)
T 3rkv_A 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKA 99 (162)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHH
Confidence 467789999999999761 0111 23445678888999999999999999999998853 443333
No 139
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=83.62 E-value=25 Score=31.70 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=22.7
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
+.++|+..+++.+... +. .-.++..++.++.++|++++..+.|++.+.
T Consensus 48 ~~~~a~~~~~~a~~~~-p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 95 (388)
T 1w3b_A 48 RLDRSAHFSTLAIKQN-PL----LAEAYSNLGNVYKERGQLQEAIEHYRHALR 95 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CC----chHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455555555555443 11 112344455555555555555555555443
No 140
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=83.48 E-value=9.8 Score=26.95 Aligned_cols=99 Identities=5% Similarity=-0.116 Sum_probs=62.5
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHhH
Q psy3481 73 LKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKT 152 (340)
Q Consensus 73 ~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~ 152 (340)
+..++.+++++|++++....|++.+..- +.-. .....+-.......+.+. -.+...++++...+ .....+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~-----~~~~~~a~~~~~~~~~~~---A~~~~~~a~~~~~~-~~~~~~ 78 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEES-----KYWLMKGKALYNLERYEE---AVDCYNYVINVIED-EYNKDV 78 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCH-----HHHHHHHHHHHHTTCHHH---HHHHHHHHHHTSCC-TTCHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCH-----HHHHHHHHHHHHccCHHH---HHHHHHHHHHhCcc-cchHHH
Confidence 3467788999999999999999998754 3222 122222222222333332 23444444443322 112334
Q ss_pred HhHHHHhhhcc-cchHHHHHHHHHHHhhcC
Q psy3481 153 NTKLGKLYFDR-EDFNKLSRILKQLHQSCQ 181 (340)
Q Consensus 153 n~kL~~l~~~m-~~~~~lp~~l~~lH~~~k 181 (340)
-..++.+++.+ +++..+-..+.++.....
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 56789999999 999999999999988754
No 141
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=83.30 E-value=32 Score=34.98 Aligned_cols=155 Identities=8% Similarity=-0.010 Sum_probs=93.2
Q ss_pred cccCCHHHHHHHHHhhc--------ccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHH
Q psy3481 42 LKEDDPKAALQSFQKVL--------DLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSI 113 (340)
Q Consensus 42 ~~~~~~~~a~~~~~~v~--------~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i 113 (340)
+...++++|++.|++.+ ... ++ ...++..+..++.++|+++++.+.|++.+..- +.-...+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~--- 472 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SE----SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWY--- 472 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TT----CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHH---
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-cc----chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHH---
Confidence 77888999999999998 443 22 22467788899999999999999999998743 332222222
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCCCcccccccc
Q psy3481 114 NSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGT 193 (340)
Q Consensus 114 ~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~a~~~~~~~ 193 (340)
...+ +. ...+.+. -.+...++++-..+. ......|+.+++.++++.. -..+.+.... .|...
T Consensus 473 lg~~-~~-~~g~~~~---A~~~~~~al~l~P~~---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~------- 534 (681)
T 2pzi_A 473 RAVA-EL-LTGDYDS---ATKHFTEVLDTFPGE---LAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVI------- 534 (681)
T ss_dssp HHHH-HH-HHTCHHH---HHHHHHHHHHHSTTC---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCH-------
T ss_pred HHHH-HH-HcCCHHH---HHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchH-------
Confidence 1111 11 1122222 233333444333221 2233578888999999988 8777777654 23311
Q ss_pred chhHHHHHHHHHHHhhhchHHHHHHHHhhhhhh
Q psy3481 194 QLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIK 226 (340)
Q Consensus 194 llleV~aleI~~~~~l~n~~~l~~~~~~~~~i~ 226 (340)
+.+..--.++..+++.......|..+..+.
T Consensus 535 ---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 564 (681)
T 2pzi_A 535 ---SAAFGLARARSAEGDRVGAVRTLDEVPPTS 564 (681)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHTSCTTS
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHhhcccC
Confidence 122211235667788888778888775444
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=83.14 E-value=12 Score=28.06 Aligned_cols=52 Identities=6% Similarity=0.002 Sum_probs=41.4
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
...+.++|++.|++.+... +.. ..++..+..++.++|++++....+++.+..
T Consensus 21 ~~~~~~~A~~~~~~al~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 72 (137)
T 3q49_B 21 VGRKYPEAAACYGRAITRN-PLV----AVYYTNRALCYLKMQQPEQALADCRRALEL 72 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHhhC-cCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4567789999999999876 322 347788889999999999999888888764
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=83.09 E-value=12 Score=30.81 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=44.9
Q ss_pred ccCCHHHHHHHHHhhcccccccc-----------hhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGER-----------GEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~-----------~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
...+.++|++.|++.+...+... ......++..+..++.++|++++++..+++.+..-
T Consensus 50 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 50 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45678999999999998653111 11224678889999999999999999999998854
No 144
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=82.99 E-value=1.6 Score=34.01 Aligned_cols=65 Identities=15% Similarity=0.042 Sum_probs=50.5
Q ss_pred hhhhhhcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 31 DLENQYYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 31 ~lEn~y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
+.++.|..+..+ ...+.++|++.|++++..+ ++. ..+...+..++.++|++++....|++.+..-
T Consensus 16 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 81 (121)
T 1hxi_A 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKE-PER----EEAWRSLGLTQAENEKDGLAIIALNHARMLD 81 (121)
T ss_dssp GCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 445555555554 4567899999999999987 332 3466788999999999999999999998864
No 145
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=82.91 E-value=2.8 Score=33.74 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=43.7
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
..+.++|++.|+++++.+ ++. ..+...+..++.++|++++....|++.+..-
T Consensus 44 ~~~~~~A~~~~~~al~~~-p~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~ 95 (150)
T 4ga2_A 44 AKEYDLAKKYICTYINVQ-ERD----PKAHRFLGLLYELEENTDKAVECYRRSVELN 95 (150)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 357799999999999987 332 3577889999999999999999999998743
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=82.87 E-value=13 Score=27.89 Aligned_cols=98 Identities=7% Similarity=0.112 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhH
Q psy3481 71 KALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWF 150 (340)
Q Consensus 71 ka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~ 150 (340)
.++.++...++++|++++....|++.+..- +.-+ .....+-.......+.+ +-.+.+.++++-..+ ..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~-----~~~~~~a~~~~~~~~~~---~A~~~~~~al~~~p~---~~ 72 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDA-----RGYSNRAAALAKLMSFP---EAIADCNKAIEKDPN---FV 72 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHTTCHH---HHHHHHHHHHHHCTT---CH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCh-----HHHHHHHHHHHHhcCHH---HHHHHHHHHHHhCCC---cH
Confidence 457788899999999999999999998754 3222 12222222222222222 233444444443322 23
Q ss_pred hHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 151 KTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 151 k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
..-..++.+++.++++..+-..+.+.....
T Consensus 73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 445678999999999999998888776553
No 147
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.84 E-value=13 Score=27.95 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=49.6
Q ss_pred hhhhhcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 32 LENQYYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 32 lEn~y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
.+-.+..+... ...+.++|++.|++.++.. ++ .+-...++..+..++.++|++++....+++.+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD-AT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-cc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 33334444443 4567899999999999876 22 2234678889999999999999999999988764
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=82.50 E-value=11 Score=27.00 Aligned_cols=52 Identities=25% Similarity=0.415 Sum_probs=40.4
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
...+.++|++.|++.+... +.. ..++..++.++.+.|++++....+++.+..
T Consensus 21 ~~~~~~~A~~~~~~~~~~~-~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 72 (125)
T 1na0_A 21 KQGDYDEAIEYYQKALELD-PNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHC-cCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3467889999999998765 222 246678889999999999999988887654
No 149
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=82.13 E-value=18 Score=28.90 Aligned_cols=118 Identities=10% Similarity=0.119 Sum_probs=74.1
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS 123 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~ 123 (340)
..+.++|++.+++.+... +. ...+...+..++.+.+++++..+.+.+.+..- +.-.. ....+-......
T Consensus 52 ~~~~~~a~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~-----~~~~lg~~~~~~ 120 (184)
T 3vtx_A 52 IGLPNDAIESLKKFVVLD-TT----SAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYAD-----AYYKLGLVYDSM 120 (184)
T ss_dssp TTCHHHHHHHHHHHHHHC-CC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----HHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhcC-ch----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchH-----HHHHHHHHHHHh
Confidence 457789999999998776 22 23456677889999999999999999887644 32111 112222222222
Q ss_pred CChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHh
Q psy3481 124 KNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQ 178 (340)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~ 178 (340)
.+.+. -.+...++++...+ ...+-..++.+++.++++..+-..+.+...
T Consensus 121 g~~~~---A~~~~~~~l~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 121 GEHDK---AIEAYEKTISIKPG---FIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp TCHHH---HHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchh---HHHHHHHHHHhcch---hhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 23222 23333444443322 123446789999999999999988887654
No 150
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=82.10 E-value=20 Score=35.15 Aligned_cols=105 Identities=12% Similarity=0.075 Sum_probs=78.5
Q ss_pred hhhcCHHHHHHHHHHHHHHhhhccchh--hHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc--cchhhhHhHHhHH
Q psy3481 81 FKLSNYKEMMSRYKQLLLYIKSAVTRN--YSEKSINSILDYISTSKNMELLQDFYETTLEALKDA--KNDRLWFKTNTKL 156 (340)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~v~k~--~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~--~~~rlf~k~n~kL 156 (340)
...|+|+++...|++.+.-....++.+ .+.++.+++-..+....+.+.....++.+++..+.. .+..--+.+-.+|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 456899999999999998665555543 678888888887776666666666777777766543 3455556677899
Q ss_pred HHhhhcccchHHHHHHHHHHHhhcCCCCC
Q psy3481 157 GKLYFDREDFNKLSRILKQLHQSCQTDDG 185 (340)
Q Consensus 157 ~~l~~~m~~~~~lp~~l~~lH~~~ktp~~ 185 (340)
|.++...+++..+.+.+.+...-+..-++
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG 417 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHG 417 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999888877766554333
No 151
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=81.58 E-value=28 Score=30.87 Aligned_cols=155 Identities=12% Similarity=0.099 Sum_probs=76.4
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCC
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKN 125 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~ 125 (340)
+.++|++.|++.+... +...+ .+.-.++.++.++|+++++...|++.+..- +.-...+.. ...+.+. ...+
T Consensus 114 ~~~~A~~~~~~al~~~-p~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~---~a~~~~~-~~~~ 184 (308)
T 2ond_A 114 KYEKVHSIYNRLLAIE-DIDPT---LVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVT---AALMEYY-CSKD 184 (308)
T ss_dssp CHHHHHHHHHHHHTSS-SSCTH---HHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHH---HHHHHHH-TSCC
T ss_pred CHHHHHHHHHHHHhcc-ccCcc---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHH---HHHHHHH-HcCC
Confidence 4566666666666654 21111 144455556666666666666666665432 111111111 0111111 1123
Q ss_pred hhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcC-CCCCccccccccchhHHHHHHHH
Q psy3481 126 MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ-TDDGEDDLKKGTQLLEIYALEIQ 204 (340)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~k-tp~~a~~~~~~~llleV~aleI~ 204 (340)
.+...+.|+.+++. ...+..+| ..++.++...++...+-.++.+....+. .|.. . ..+...-+.
T Consensus 185 ~~~A~~~~~~al~~--~p~~~~~~----~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~------~---~~l~~~~~~ 249 (308)
T 2ond_A 185 KSVAFKIFELGLKK--YGDIPEYV----LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK------S---GEIWARFLA 249 (308)
T ss_dssp HHHHHHHHHHHHHH--HTTCHHHH----HHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG------C---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcHHHH----HHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH------H---HHHHHHHHH
Confidence 33333333333332 12234444 5677788888999999999998887643 2321 1 112222234
Q ss_pred HHHhhhchHHHHHHHHhhhh
Q psy3481 205 MYTAQKNNKKLKKLYEQSLH 224 (340)
Q Consensus 205 ~~~~l~n~~~l~~~~~~~~~ 224 (340)
+....+|...+...+..+..
T Consensus 250 ~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 250 FESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44556676666666665543
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=81.43 E-value=3.2 Score=32.19 Aligned_cols=47 Identities=9% Similarity=0.040 Sum_probs=21.0
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLL 97 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~ 97 (340)
+.++|++.|++.+..+ ++.. .++..+..++.++|++++....|++.+
T Consensus 66 ~~~~A~~~~~~al~l~-P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 66 KDGLAIIALNHARMLD-PKDI----AVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp CHHHHHHHHHHHHHHC-TTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555554444 2111 133444445555555555554444443
No 153
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=80.51 E-value=7.2 Score=29.40 Aligned_cols=54 Identities=9% Similarity=-0.009 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 45 DDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
.+.++|++.|++.++...+ ..-.-.++-++..++.++|++++....+++.+..-
T Consensus 4 g~~~~A~~~~~~al~~~~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 57 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQ--GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF 57 (117)
T ss_dssp ---CCCHHHHHHHHSSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHcCCC--CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3456899999999987311 12345678899999999999999999999987753
No 154
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=80.20 E-value=14 Score=35.97 Aligned_cols=109 Identities=13% Similarity=0.106 Sum_probs=77.3
Q ss_pred HHHHhhhcCHHHHHHHHHHHHHHhhhccch--hhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc--cchhhhHhH
Q psy3481 77 IKINFKLSNYKEMMSRYKQLLLYIKSAVTR--NYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA--KNDRLWFKT 152 (340)
Q Consensus 77 ~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k--~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~--~~~rlf~k~ 152 (340)
+.-+.++|+|+++.+.|++.+.-..+..+. -...++.+++-..+....+.+.....++.+++..+.. .+...-+.+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344567899999999999998754333333 3577788888776655545555556666666665543 445666677
Q ss_pred HhHHHHhhhcccchHHHHHHHHHHHhhcCCCCC
Q psy3481 153 NTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 185 (340)
Q Consensus 153 n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~~ 185 (340)
-.+||.++...+++..+.+.+.+...-++.-++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG 406 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 406 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Confidence 789999999999999999888877766654444
No 155
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=80.06 E-value=7.4 Score=31.19 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=38.7
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHH-HhhhcCH--HHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKI-NFKLSNY--KEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~-~~~~~~~--~~~~~~~~~l~~~~ 100 (340)
...+.++|++.|++.+... ++. ..++..++.+ +.+.|++ ++....+++.+..-
T Consensus 56 ~~~~~~~A~~~~~~al~~~-p~~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~ 111 (177)
T 2e2e_A 56 WQNDYSNSLLAYRQALQLR-GEN----AELYAALATVLYYQASQHMTAQTRAMIDKALALD 111 (177)
T ss_dssp HTTCHHHHHHHHHHHHHHH-CSC----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC
Confidence 3467789999999988876 322 2355677777 7788888 88888888877643
No 156
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=79.51 E-value=25 Score=32.18 Aligned_cols=104 Identities=16% Similarity=0.150 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccc---hh-------hHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy3481 69 GFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVT---RN-------YSEKSINSILDYISTSKNMELLQDFYETTLE 138 (340)
Q Consensus 69 ~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~---k~-------~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~ 138 (340)
.-.++..+..+++++|++++.+..|++.+... +... -. .......++-.......+.+ +-.+.+.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~---~A~~~~~~ 221 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS---AAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHH
Confidence 34678888999999999999999999998876 3321 00 00122222222222222222 23444445
Q ss_pred HHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 139 ALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 139 ~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
+|+-..+ ..++-.+++.+++.++++..+-..+.+....
T Consensus 222 al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 222 ALELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5543322 2334468899999999999999999988876
No 157
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=79.43 E-value=12 Score=31.90 Aligned_cols=57 Identities=21% Similarity=0.162 Sum_probs=47.2
Q ss_pred ccCCHHHHHHHHHhhccc-------ccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDL-------ESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~-------~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
+-.+.++|+..|.+.|+. + ++..+.-.|++-.....+.++|++++.+..|++.+...
T Consensus 69 ~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 69 GLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 356779999999999988 7 44444445677999999999999999999999999876
No 158
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=78.67 E-value=1.4 Score=32.15 Aligned_cols=90 Identities=13% Similarity=0.044 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcc-c--h
Q psy3481 70 FKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAK-N--D 146 (340)
Q Consensus 70 fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~ 146 (340)
..++.++...++++|++++..+.|++.+..- +.-. .....+-.......+.+ +-.+.+.++++-.. + .
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~-----~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~ 74 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNP-----VGYSNKAMALIKLGEYT---QAIQMCQQGLRYTSTAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHTTCHH---HHHHHHHHHHTSCSSTTSH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCH-----HHHHHHHHHHHHhcCHH---HHHHHHHHHHHhCCCccHH
Confidence 3567888999999999999999999998754 3222 22222222222222322 23445555555432 2 2
Q ss_pred hhhHhHHhHHHHhhhcccchHH
Q psy3481 147 RLWFKTNTKLGKLYFDREDFNK 168 (340)
Q Consensus 147 rlf~k~n~kL~~l~~~m~~~~~ 168 (340)
..+..+-..++.++..+++...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~ 96 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQI 96 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhHhh
Confidence 3344555667777776665443
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=78.21 E-value=22 Score=27.59 Aligned_cols=108 Identities=7% Similarity=0.013 Sum_probs=58.4
Q ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHH
Q psy3481 52 QSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQD 131 (340)
Q Consensus 52 ~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~ 131 (340)
..|++++..+ + -...++..+...++++|++++....|++.+..- +.-...+ ..+-.......+.+.
T Consensus 5 ~~l~~al~~~-p----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~-----~~lg~~~~~~g~~~~--- 70 (142)
T 2xcb_A 5 GTLAMLRGLS-E----DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYF-----LGLGACRQSLGLYEQ--- 70 (142)
T ss_dssp ----CCTTCC-H----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH-----HHHHHHHHHTTCHHH---
T ss_pred hhHHHHHcCC-H----HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHH-----HHHHHHHHHHhhHHH---
Confidence 4566666655 2 123456677888888999999999998887643 3322221 112122222233333
Q ss_pred HHHHHHHHHhhc-cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHH
Q psy3481 132 FYETTLEALKDA-KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLH 177 (340)
Q Consensus 132 ~~~~~~~~~~~~-~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH 177 (340)
-.+....+++-. .+-..|+. ++.+++.++++..+-..+.+..
T Consensus 71 A~~~~~~al~~~p~~~~~~~~----lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 71 ALQSYSYGALMDINEPRFPFH----AAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHHCTTCTHHHHH----HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHH----HHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555433 33444444 4667777777777777666544
No 160
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=78.15 E-value=4 Score=34.44 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=44.6
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
...+.++|++.|++.++.+ ++. ..++..+..++.++|++++....|++.+..-
T Consensus 66 ~~g~~~~A~~~~~~al~~~-p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKA-PNN----VDCLEACAEMQVCRGQEKDALRMYEKILQLE 118 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4567899999999999987 332 3677889999999999999999999998743
No 161
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=77.75 E-value=37 Score=30.04 Aligned_cols=122 Identities=11% Similarity=0.158 Sum_probs=77.3
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHh-hhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINF-KLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~-~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
..+.++|++.|++.+...+.. | ......+.+.. .+|++++....|++.+... +. .........++...
T Consensus 147 ~~~~~~A~~~~~~a~~~~p~~---~--~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~-----~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 147 AEGIKSGRMIFKKAREDARTR---H--HVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GD-----IPEYVLAYIDYLSH 215 (308)
T ss_dssp HHCHHHHHHHHHHHHTSTTCC---T--HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TT-----CHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHhcCCCC---H--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC-----cHHHHHHHHHHHHH
Confidence 456789999999999876322 1 12224444433 3699999999999998755 32 34566777777766
Q ss_pred CCChhHHHHHHHHHHHH--HhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 123 SKNMELLQDFYETTLEA--LKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~--~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
..+.+.....|+.+++. +.-.++..+|. .++.+....++...+..++.+....+
T Consensus 216 ~g~~~~A~~~~~~al~~~~l~p~~~~~l~~----~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWA----RFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp TCCHHHHHHHHHHHHHSSSSCGGGCHHHHH----HHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhccCCCHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 65665554555544431 11112356664 34555666788888888887777665
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=77.67 E-value=29 Score=33.36 Aligned_cols=103 Identities=12% Similarity=0.075 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccc---hhhH-------HHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy3481 70 FKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVT---RNYS-------EKSINSILDYISTSKNMELLQDFYETTLEA 139 (340)
Q Consensus 70 fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~---k~~~-------~k~i~~ild~~~~~~~~~~~~~~~~~~~~~ 139 (340)
-.+++++...++++|+|+++...|++.+.+. +... .... .....++-.......+. ++-.+.+.++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~---~~A~~~~~~a 343 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY---TKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHH
Confidence 4577888999999999999999999999876 3321 0000 11111111111122222 2334445555
Q ss_pred HhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 140 LKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 140 ~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
|+-..+ ..++-.+++.+++.++++..+-..+.+....
T Consensus 344 l~~~p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 344 LGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 543322 2344567899999999999999999988765
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=76.06 E-value=22 Score=26.56 Aligned_cols=99 Identities=15% Similarity=0.058 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhh
Q psy3481 70 FKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLW 149 (340)
Q Consensus 70 fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf 149 (340)
-.++.++...++++|++++....|++.+..- +.-+ .....+-.......+.+. -.+...++++-..+ .
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~-----~~~~~l~~~~~~~~~~~~---A~~~~~~al~~~p~---~ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVA-----VYYTNRALCYLKMQQPEQ---ALADCRRALELDGQ---S 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHTTCHHH---HHHHHHHHHHHCTT---C
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcH-----HHHHHHHHHHHHhcCHHH---HHHHHHHHHHhCch---h
Confidence 4567888999999999999999999998754 3222 222222222222333332 23334444443322 2
Q ss_pred HhHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 150 FKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 150 ~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
...-..++.+++.++++..+...+.+.....
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 3345678999999999999998888776554
No 164
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=75.31 E-value=11 Score=38.46 Aligned_cols=117 Identities=11% Similarity=0.102 Sum_probs=75.3
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS 123 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~ 123 (340)
..+.++|++.|++.++.. ++. ..++..+..++.++|+++++...|++.+..- +.-...+... -.+....
T Consensus 446 ~g~~~~A~~~~~~al~~~-p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~l--g~~~~~~--- 514 (681)
T 2pzi_A 446 LGDVAKATRKLDDLAERV-GWR----WRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLAL--AATAELA--- 514 (681)
T ss_dssp HTCHHHHHHHHHHHHHHH-CCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHH--HHHHHHH---
T ss_pred cCCHHHHHHHHHHHhccC-cch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH--HHHHHHc---
Confidence 466799999999999876 322 3577788899999999999999999998754 4333222211 1111111
Q ss_pred CChhHHHHHHHHHHHHHhhc-cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 124 KNMELLQDFYETTLEALKDA-KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~-~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
.+.+. .+.|+ ++++-. .+.. +-..|+.++..++++..+-..+.+....
T Consensus 515 g~~~~-~~~~~---~al~~~P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 515 GNTDE-HKFYQ---TVWSTNDGVIS----AAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp TCCCT-TCHHH---HHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred CChHH-HHHHH---HHHHhCCchHH----HHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 12222 22333 344322 2323 3367899999999999998888776543
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=74.29 E-value=34 Score=32.86 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=45.2
Q ss_pred ccCCHHHHHHHHHhhcccccccc----------hhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGER----------GEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~----------~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
+..+.++|++.|++.++..+... ......++..+..++.++|++++++..|++.+..-
T Consensus 280 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 280 KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 35677999999999998653221 11225777888899999999999999999998854
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=73.58 E-value=15 Score=35.78 Aligned_cols=116 Identities=6% Similarity=-0.021 Sum_probs=65.3
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
...+.++|++.|++.++.. +.. -.++..+..++.++|+++++.+.|++.+..- +.-..+ ...+-.....
T Consensus 18 ~~g~~~~A~~~~~~Al~~~-p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~-----~~~lg~~~~~ 86 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN-PSN----AIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKG-----YYRRAASNMA 86 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHH-----HHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-Ccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHH-----HHHHHHHHHH
Confidence 3457899999999999887 322 4677889999999999999999999998743 332222 2222222222
Q ss_pred CCChhHHHHHHHHHHHHHhhc-cchhhhHhHHhHHHHhhhcccchHHHHHHHH
Q psy3481 123 SKNMELLQDFYETTLEALKDA-KNDRLWFKTNTKLGKLYFDREDFNKLSRILK 174 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~-~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~ 174 (340)
..+.+.. .+...++++-. .+...+ .+...+..+...+++..+-+...
T Consensus 87 ~g~~~eA---~~~~~~al~~~p~~~~~~--~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAA---LRDYETVVKVKPHDKDAK--MKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHH---HHHHHHHHHHSTTCTTHH--HHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHH---HHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHHhcccc
Confidence 2233322 33333344333 223322 23333333666677776666655
No 167
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=73.45 E-value=6.5 Score=29.88 Aligned_cols=56 Identities=11% Similarity=-0.042 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHhhcccccc--cchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 45 DDPKAALQSFQKVLDLESG--ERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~~--~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
.+...|+.-|++.++...+ ..+.-.-..+.+++..++++|++++++.++++.+.+-
T Consensus 19 ~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4667899999988865321 1233345778999999999999999999999998754
No 168
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=73.42 E-value=4.6 Score=35.26 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=63.5
Q ss_pred chhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcc
Q psy3481 65 RGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAK 144 (340)
Q Consensus 65 ~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (340)
..++.++++-.+...+|++++|..+...|++.+..- ..++|+++.++ -+-.-+..++..
T Consensus 58 sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~-k~l~k~~s~~~---~~~~~ss~p~s~----------------- 116 (167)
T 3ffl_A 58 SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK-KALSKTSKVRP---STGNSASTPQSQ----------------- 116 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HCC----------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-HHHhcCCCccc---cccccCCCcccc-----------------
Confidence 478999999999999999999999999999999976 67888876632 111001111100
Q ss_pred chhhhHh--HHhHHHHhhhcccchHHHHHHHHHHHhhcCCCC
Q psy3481 145 NDRLWFK--TNTKLGKLYFDREDFNKLSRILKQLHQSCQTDD 184 (340)
Q Consensus 145 ~~rlf~k--~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~ 184 (340)
-++.- +.-|.+..+.+.++.+.+-..+..|-.+-+||-
T Consensus 117 --~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~k 156 (167)
T 3ffl_A 117 --CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPK 156 (167)
T ss_dssp --CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHH
T ss_pred --cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHH
Confidence 01111 224577788888889999999999988988886
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.91 E-value=29 Score=25.96 Aligned_cols=104 Identities=11% Similarity=0.009 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchh
Q psy3481 68 WGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDR 147 (340)
Q Consensus 68 w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 147 (340)
-...++.++...+++.|++++..+.|++.+..- +. ..........+-.......+.+. -.+.+.++++...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~--~~~~~~~~~~~a~~~~~~~~~~~---A~~~~~~~~~~~~~~- 98 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-AT--PQDQAVLHRNRAACHLKLEDYDK---AETEASKAIEKDGGD- 98 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CC--HHHHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-cc--chHHHHHHHHHHHHHHHHccHHH---HHHHHHHHHhhCccC-
Confidence 345678889999999999999999999987643 21 10112233333333333333332 344444444433221
Q ss_pred hhHhHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 148 LWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 148 lf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
...-..++.+++.++++..+-..+.+.....
T Consensus 99 --~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 99 --VKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2334578899999999999999999888763
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=71.20 E-value=47 Score=28.19 Aligned_cols=103 Identities=7% Similarity=0.061 Sum_probs=58.9
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhh-------HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---
Q psy3481 73 LKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNY-------SEKSINSILDYISTSKNMELLQDFYETTLEALKD--- 142 (340)
Q Consensus 73 ~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~-------~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~--- 142 (340)
+++....+++.|+|++.+..|++.+.+- +..+... -.-.-.+.=--.......+ +-.+.+-.+|+-
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~---eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD---EALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHhhhc
Confidence 4556677888888888888888888876 4321100 0001111111111112222 223333333332
Q ss_pred ----c-cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 143 ----A-KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 143 ----~-~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
. .+-..|.+.--+++..+..++|+..+..-+.+...-
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2 234566666678999999999999999999887765
No 171
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=70.15 E-value=30 Score=25.45 Aligned_cols=47 Identities=9% Similarity=0.083 Sum_probs=38.6
Q ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 49 AALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 49 ~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
+|++.|++.+... ++. ..++..+..++.++|++++....|++.+..-
T Consensus 3 ~a~~~~~~al~~~-p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 49 (115)
T 2kat_A 3 AITERLEAMLAQG-TDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFD 49 (115)
T ss_dssp CHHHHHHHHHTTT-CCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-CCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 5888999999877 322 2467789999999999999999999998754
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=68.71 E-value=34 Score=30.23 Aligned_cols=96 Identities=17% Similarity=0.104 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhH
Q psy3481 71 KALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWF 150 (340)
Q Consensus 71 ka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~ 150 (340)
.++..++..++++|+++++...|++.+..- +.-...+ ..+-.......+.+ +-.+.+.++++-. .-..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~-----~~la~~~~~~~~~~---~A~~~~~~al~~~---p~~~ 72 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYY-----TNRALCYLKMQQPE---QALADCRRALELD---GQSV 72 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHH-----HHHHHHHHHTTCHH---HHHHHHHHHTTSC---TTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHH-----HHHHHHHHHhcCHH---HHHHHHHHHHHhC---CCCH
Confidence 356667777777777777777777776643 3221111 11112111222222 1233333333322 1122
Q ss_pred hHHhHHHHhhhcccchHHHHHHHHHHHh
Q psy3481 151 KTNTKLGKLYFDREDFNKLSRILKQLHQ 178 (340)
Q Consensus 151 k~n~kL~~l~~~m~~~~~lp~~l~~lH~ 178 (340)
+....++.+++.++++..+-..+.+...
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445667777777777777776665443
No 173
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=67.55 E-value=36 Score=32.26 Aligned_cols=118 Identities=12% Similarity=0.196 Sum_probs=76.1
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcC-HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSN-YKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~-~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
..+.++|++.|++++...+.. ..++..+..++.++|+ +++.+..|++.+..- +.-...+... ..++...
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~-----~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~--g~~~~~~-- 179 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAAN-----YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR--RVLVEWL-- 179 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH--HHHHHHH--
T ss_pred CCChHHHHHHHHHHHHhCccC-----HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH--HHHHHHc--
Confidence 345789999999999987332 2355667788999997 999999999998744 4332222221 1122222
Q ss_pred CCChhHHHHHHHHHHHHHh-hccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 123 SKNMELLQDFYETTLEALK-DAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~-~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
.+.+. -.+.+..+|+ +.+|-..| ..++.++..++++...-..+.+....
T Consensus 180 -g~~~e---Al~~~~kal~ldP~~~~a~----~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 180 -RDPSQ---ELEFIADILNQDAKNYHAW----QHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp -TCCTT---HHHHHHHHHHHCTTCHHHH----HHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred -cCHHH---HHHHHHHHHHhCccCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 12222 2444455554 33555555 45778888889998888888877665
No 174
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=67.45 E-value=57 Score=27.70 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhh----hcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHh
Q psy3481 45 DDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFK----LSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYI 120 (340)
Q Consensus 45 ~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~----~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~ 120 (340)
.+.++|++.|++.++.. . . .++..+..++.. .+++++....|++.+..- .......+=..+
T Consensus 20 ~~~~~A~~~~~~a~~~~--~-~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~ 84 (273)
T 1ouv_A 20 KDFTQAKKYFEKACDLK--E-N----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------YSNGCHLLGNLY 84 (273)
T ss_dssp TCHHHHHHHHHHHHHTT--C-H----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC--C-H----HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHH
Confidence 48899999999998843 1 1 477889999999 999999999999886531 122222232323
Q ss_pred hc----CCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhc----ccchHHHHHHHHHHHhh
Q psy3481 121 ST----SKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFD----REDFNKLSRILKQLHQS 179 (340)
Q Consensus 121 ~~----~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~----m~~~~~lp~~l~~lH~~ 179 (340)
.. ..+.+...+.|+ ++++.. ...+-..|+.++.. .+++.....++.+....
T Consensus 85 ~~g~~~~~~~~~A~~~~~---~a~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYS---KACDLK-----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp HHTSSSCCCHHHHHHHHH---HHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred hCCCCcccCHHHHHHHHH---HHHHcC-----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence 22 333333322333 333221 22345678888888 89999998888887764
No 175
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=66.79 E-value=7.6 Score=31.50 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=38.9
Q ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhcc
Q psy3481 49 AALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAV 104 (340)
Q Consensus 49 ~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v 104 (340)
+|++.|++.++.. ++. ..+.-.+..++.++|++++....|++.+..- +..
T Consensus 92 ~a~~~~~~al~~~-P~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~ 141 (176)
T 2r5s_A 92 PELKRLEQELAAN-PDN----FELACELAVQYNQVGRDEEALELLWNILKVN-LGA 141 (176)
T ss_dssp HHHHHHHHHHHHS-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTT
T ss_pred hHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-ccc
Confidence 4788999998876 322 3566788899999999999999999988754 543
No 176
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=66.61 E-value=32 Score=24.46 Aligned_cols=99 Identities=14% Similarity=0.195 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhh
Q psy3481 69 GFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRL 148 (340)
Q Consensus 69 ~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl 148 (340)
.-.++..++.++.+.|++++..+.|++.+..- +. .......+........+.+.. .....++++...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~-----~~~~~~~la~~~~~~~~~~~A---~~~~~~~~~~~~~~-- 76 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PN-----NAEAWYNLGNAYYKQGDYDEA---IEYYQKALELDPNN-- 76 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHHCTTC--
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC-----cHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHhCCcc--
Confidence 35677788899999999999999999987753 21 122333444433333333332 33333333322221
Q ss_pred hHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 149 WFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 149 f~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
..+-..++.+++.++++......+.+....
T Consensus 77 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 77 -AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 123357888999999999999999888765
No 177
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=66.21 E-value=23 Score=32.50 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccc---hhhHHH--------HHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy3481 70 FKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVT---RNYSEK--------SINSILDYISTSKNMELLQDFYETTLE 138 (340)
Q Consensus 70 fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~---k~~~~k--------~i~~ild~~~~~~~~~~~~~~~~~~~~ 138 (340)
-.+++++...++++|+++++...|++.+.+...... ...-.+ ...++-.......+.+ +-.+.+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~---~A~~~~~~ 255 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD---EAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH---HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHH
Confidence 456778889999999999999999998876522110 000011 1112222222222222 23445555
Q ss_pred HHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 139 ALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 139 ~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
+|+-..+ ..++-.+++.+++.++++..+-..+.+....
T Consensus 256 al~~~p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 256 VLTEEEK---NPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5543322 1234467899999999999999888887644
No 178
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=65.65 E-value=28 Score=29.55 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=57.7
Q ss_pred chhhhhhccccccc-cCCH---HHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccc
Q psy3481 30 VDLENQYYNSKALK-EDDP---KAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVT 105 (340)
Q Consensus 30 ~~lEn~y~~ak~~~-~~~~---~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~ 105 (340)
++.+-+|.-|-++. +.+| +++|..|+++++.+.+ +-.-.++..+.--+++.|+|++.+++.++++..= |
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p---~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie-P--- 102 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK---EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE-P--- 102 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH---HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-T---
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc---cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-C---
Confidence 45555555555554 4435 5999999999987511 2344688999999999999999999999998732 3
Q ss_pred hhhHHHHHHHHHH
Q psy3481 106 RNYSEKSINSILD 118 (340)
Q Consensus 106 k~~~~k~i~~ild 118 (340)
.|.-++.+++.++
T Consensus 103 ~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 103 QNNQAKELERLID 115 (152)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4445555555554
No 179
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=63.71 E-value=47 Score=27.38 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=60.1
Q ss_pred chhhhhhccccccc-cCCHH---HHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccc
Q psy3481 30 VDLENQYYNSKALK-EDDPK---AALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVT 105 (340)
Q Consensus 30 ~~lEn~y~~ak~~~-~~~~~---~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~ 105 (340)
+..+-+|--|-++. +.+|. .+|..+++++..+. .+-.-..+..+.--++|.|+|++.+.+...+|..= |
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~---p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e-P--- 105 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS---KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE-P--- 105 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T---
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-C---
Confidence 44566666666653 44564 49999999998651 23456789999999999999999999999998732 3
Q ss_pred hhhHHHHHHHHHH
Q psy3481 106 RNYSEKSINSILD 118 (340)
Q Consensus 106 k~~~~k~i~~ild 118 (340)
-|.-+++++.+|+
T Consensus 106 ~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 106 QNNQAKELERLID 118 (126)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3556666666665
No 180
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=63.33 E-value=36 Score=23.94 Aligned_cols=97 Identities=10% Similarity=0.091 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhH
Q psy3481 71 KALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWF 150 (340)
Q Consensus 71 ka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~ 150 (340)
.++..++.++...|++++....|++.+..- +.- ......+-.......+.+. -.+...++++-..+ ..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~-----~~~~~~~a~~~~~~~~~~~---A~~~~~~~~~~~~~---~~ 72 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHN-----HVLYSNRSAAYAKKGDYQK---AYEDGCKTVDLKPD---WG 72 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----HHHHHHHHHHHHHHTCHHH---HHHHHHHHHHHCTT---CH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCc-----HHHHHHHHHHHHhhccHHH---HHHHHHHHHHhCcc---cH
Confidence 567788899999999999999999998754 321 1222222222222222222 23334444443322 12
Q ss_pred hHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 151 KTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 151 k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
..-..++.+++.++++...-..+.+....
T Consensus 73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 73 KGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 34467888999999999999999888765
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=62.85 E-value=15 Score=34.68 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=40.3
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
..+.++|++.|+++++.+ ++ ..+++..+..++.++|+++++++.|++.+..-
T Consensus 286 ~g~~~~A~~~~~~al~~~-p~----~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEID-PS----NTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp TTCHHHHHHHHHHHHTTC-TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHhC-ch----hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 456688888888888876 22 25678888888999999999888888877643
No 182
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=62.81 E-value=16 Score=32.46 Aligned_cols=48 Identities=21% Similarity=0.421 Sum_probs=20.9
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
+.++|++.|+++++.. ++. .+++..+..++.++|++++....|++.+.
T Consensus 53 ~~~~A~~~~~~al~~~-p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 53 QPEQALADCRRALELD-GQS----VKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp CHHHHHHHHHHHTTSC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444443 111 13444444444444555444444444433
No 183
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=61.92 E-value=69 Score=31.56 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=85.5
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCC
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKN 125 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~ 125 (340)
+.+.|.+.|++....... -.. ..+-.+|..+++.|+.+++.+.++++... .+.. ...+-|.+|.-+....+
T Consensus 85 ~l~~A~~lf~~M~~~G~~-Pd~---~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---g~~P--d~~tyn~lI~~~~~~g~ 155 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVV-PNE---ATFTNGARLAVAKDDPEMAFDMVKQMKAF---GIQP--RLRSYGPALFGFCRKGD 155 (501)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCCC--CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhCCC-CCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC--ccceehHHHHHHHHCCC
Confidence 357899999988765421 112 24566899999999999999999998653 1221 23456889998887766
Q ss_pred hhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcCCCC
Q psy3481 126 MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDD 184 (340)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ktp~ 184 (340)
.+...++++...+ .. -..-..+-..|++.+-..++...+-.++.++...-..|.
T Consensus 156 ~~~A~~l~~~M~~---~G--~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 156 ADKAYEVDAHMVE---SE--VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHHHHHHHHHHH---TT--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred HHHHHHHHHHHHh---cC--CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 6555444443322 11 111122446788888999999999999999998887777
No 184
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=60.58 E-value=43 Score=23.89 Aligned_cols=97 Identities=13% Similarity=0.166 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHh
Q psy3481 72 ALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFK 151 (340)
Q Consensus 72 a~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k 151 (340)
++-.++..+.+.|++++....+++.+..- +.- ......+........+.+.. .+...++++...+. ..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~-----~~~~~~~a~~~~~~~~~~~A---~~~~~~~~~~~~~~---~~ 70 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRS-----AEAWYNLGNAYYKQGDYDEA---IEYYQKALELDPRS---AE 70 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC-----HHHHHHHHHHHHHHTCHHHH---HHHHHHHHHHCTTC---HH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-Ccc-----hhHHHHHHHHHHHhcCHHHH---HHHHHHHHHHCCCc---hH
Confidence 55678889999999999999999987643 211 22223333332222233322 22333333332221 12
Q ss_pred HHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 152 TNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 152 ~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
....++.+++.++++......+.+.....
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELD 99 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 33567889999999999999999887763
No 185
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=57.45 E-value=88 Score=26.48 Aligned_cols=113 Identities=16% Similarity=0.091 Sum_probs=73.8
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhh----hcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHH
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFK----LSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDY 119 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~----~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~ 119 (340)
..++++|++.|++.++.. .-.++..+..++.+ .+++++....|++.+..- .......+=..
T Consensus 55 ~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~ 119 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN-------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--------YAEGCASLGGI 119 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--------CccHHHHHHHH
Confidence 567899999999998764 23577789999999 999999999999886531 12233333333
Q ss_pred hhc----CCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhc----ccchHHHHHHHHHHHhh
Q psy3481 120 IST----SKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFD----REDFNKLSRILKQLHQS 179 (340)
Q Consensus 120 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~----m~~~~~lp~~l~~lH~~ 179 (340)
+.. ..+.+.. .+....+++.. .......|+.++.. .+++..+-..+.+....
T Consensus 120 ~~~~~~~~~~~~~A---~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 120 YHDGKVVTRDFKKA---VEYFTKACDLN-----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp HHHCSSSCCCHHHH---HHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHH---HHHHHHHHhcC-----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 333 3333332 33333333321 22344677888887 88998888888887654
No 186
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=55.85 E-value=1.5e+02 Score=28.70 Aligned_cols=107 Identities=14% Similarity=0.088 Sum_probs=66.9
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc-cchhhhHhHH
Q psy3481 75 QMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA-KNDRLWFKTN 153 (340)
Q Consensus 75 q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~-~~~rlf~k~n 153 (340)
+++++++..|+|.+++..+++++.+++..=.+...=...--.+......+|..-+...|..++.....- ...++-.+..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 778999999999999999999999995422232222222222333334456666666666665543221 2245555555
Q ss_pred hHHHHhhh-cccchHHHHHHHHHHHhhcC
Q psy3481 154 TKLGKLYF-DREDFNKLSRILKQLHQSCQ 181 (340)
Q Consensus 154 ~kL~~l~~-~m~~~~~lp~~l~~lH~~~k 181 (340)
.--+.++. +.++|..+-..|=+--+.|.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 56666777 78888888766655544443
No 187
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=55.05 E-value=98 Score=29.19 Aligned_cols=48 Identities=6% Similarity=0.101 Sum_probs=32.2
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
+.++|++.|++++...+.. ..+...+..++.++|++++.+..|++.+.
T Consensus 147 d~~eAl~~~~~al~l~P~~-----~~a~~~~g~~~~~~g~~~eAl~~~~kal~ 194 (382)
T 2h6f_A 147 DLHEEMNYITAIIEEQPKN-----YQVWHHRRVLVEWLRDPSQELEFIADILN 194 (382)
T ss_dssp CHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4899999999999887322 23444555566666666666666666654
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=55.01 E-value=13 Score=34.34 Aligned_cols=51 Identities=20% Similarity=0.109 Sum_probs=38.9
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLL 98 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~ 98 (340)
+..+.++|++.|++++..+ +.. .+++..+..++..+|+++++...|++.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKN----PKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456688888888888876 322 46788888888999999988888887755
No 189
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=54.40 E-value=1.4e+02 Score=27.92 Aligned_cols=131 Identities=14% Similarity=0.131 Sum_probs=70.9
Q ss_pred hcccccc-ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhh-ccc--hhhHHH
Q psy3481 36 YYNSKAL-KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKS-AVT--RNYSEK 111 (340)
Q Consensus 36 y~~ak~~-~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~-~v~--k~~~~k 111 (340)
++-|..+ ...++++|++.++++++.. +. .-...+.-.++.++.++|+.+.+...++++...- + .+. -+-.-.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~-~~--~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~-~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDND-EA--EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI-EDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSS-CS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccC-CC--cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-ccccccchHHHHH
Confidence 3444433 3567788888888887654 11 2456677778888888888888888887775422 1 000 000011
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchHHHHHHHHHHH
Q psy3481 112 SINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLH 177 (340)
Q Consensus 112 ~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH 177 (340)
.....+....+... .++-+....|..+.... |-.+.+-+. ++..++++..+-+.+..+-
T Consensus 180 Laea~v~l~~g~~~---~q~A~~~f~El~~~~p~---~~~~~lLln-~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 180 LAESYIKFATNKET---ATSNFYYYEELSQTFPT---WKTQLGLLN-LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHHHHHTCST---TTHHHHHHHHHHTTSCS---HHHHHHHHH-HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcc---HHHHHHHHHHHHHhCCC---cccHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence 11122222222211 22224444443333322 323333333 8899999999999987643
No 190
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=54.12 E-value=57 Score=23.28 Aligned_cols=101 Identities=12% Similarity=-0.021 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccch
Q psy3481 67 EWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKND 146 (340)
Q Consensus 67 ~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (340)
.-...++..++.+++..|++++....|++.+..- +.- ......+-.......+.+.. .+...++++...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~-----~~~~~~~a~~~~~~~~~~~A---~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PAN-----AVYFCNRAAAYSKLGNYAGA---VQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----HHHHHHHHHHHHHTTCHHHH---HHHHHHHHHHCTTC
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCC-----HHHHHHHHHHHHHhhchHHH---HHHHHHHHhcCccC
Confidence 4456778888999999999999999999988754 221 12222333333233333332 33333444333221
Q ss_pred hhhHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 147 RLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 147 rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
...-..++.+++.++++..+-..+.+....
T Consensus 80 ---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 80 ---SKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 234467888999999999999999888776
No 191
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=51.77 E-value=19 Score=31.94 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=55.3
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCC
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKN 125 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~ 125 (340)
+.++|++.|++.+... ++. ..+.-.+..++.++|++++.++.|++++..- +.-....+-+.+-.++... .+
T Consensus 200 ~~~~a~~~l~~al~~~-P~~----~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~---g~ 270 (287)
T 3qou_A 200 ADTPEIQQLQQQVAEN-PED----AALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAAL---GT 270 (287)
T ss_dssp TSCHHHHHHHHHHHHC-TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHH---CT
T ss_pred ccCccHHHHHHHHhcC-Ccc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHc---CC
Confidence 3456899999998877 332 2366788899999999999999999999865 6554444554444444444 33
Q ss_pred hhHHHHHHHHHHH
Q psy3481 126 MELLQDFYETTLE 138 (340)
Q Consensus 126 ~~~~~~~~~~~~~ 138 (340)
.+.....|...+.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 3333344555444
No 192
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=51.17 E-value=25 Score=34.16 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=44.0
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~ 100 (340)
...+.++|++.|++.++.. ++. .+++..+..++.++|+++++.+.|++.+..-
T Consensus 52 ~~g~~~~A~~~~~~al~l~-p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 52 RTECYGYALGDATRAIELD-KKY----IKGYYRRAASNMALGKFRAALRDYETVVKVK 104 (477)
T ss_dssp HTTCHHHHHHHHHHHHHSC-TTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3457899999999999887 322 3577889999999999999999999988753
No 193
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=48.01 E-value=87 Score=23.65 Aligned_cols=101 Identities=12% Similarity=0.038 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccchh
Q psy3481 68 WGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDR 147 (340)
Q Consensus 68 w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 147 (340)
-.-.++.+++.++++.|++++....|++.+..- +.- ......+-.......+.+.. .+...++++-..+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~-----~~~~~~~a~~~~~~~~~~~A---~~~~~~a~~~~~~-- 79 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN-PSN-----AIYYGNRSLAYLRTECYGYA---LGDATRAIELDKK-- 79 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC-----HHHHHHHHHHHHHTTCHHHH---HHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC-----hHHHHHHHHHHHHcCCHHHH---HHHHHHHHHhCcc--
Confidence 345677888999999999999999999998754 221 22223333333333333322 3333344433222
Q ss_pred hhHhHHhHHHHhhhcccchHHHHHHHHHHHhhc
Q psy3481 148 LWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180 (340)
Q Consensus 148 lf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~ 180 (340)
...+-..++.+++.++++..+-..+.+.....
T Consensus 80 -~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 80 -YIKGYYRRAASNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 12344678899999999999999999888763
No 194
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=47.57 E-value=90 Score=29.85 Aligned_cols=123 Identities=11% Similarity=0.123 Sum_probs=79.9
Q ss_pred cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHH-HhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKI-NFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 44 ~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~-~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
..+.++|++.|++.+...+....-| ...+.+ +..+|++++....|++.+... + .........+++...
T Consensus 369 ~~~~~~A~~~~~~Al~~~~~~~~~~-----~~~a~~~~~~~~~~~~A~~~~e~al~~~-p-----~~~~~~~~~~~~~~~ 437 (530)
T 2ooe_A 369 AEGIKSGRMIFKKAREDARTRHHVY-----VTAALMEYYCSKDKSVAFKIFELGLKKY-G-----DIPEYVLAYIDYLSH 437 (530)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCTHHH-----HHHHHHHHHHTCCHHHHHHHHHHHHHHH-T-----TCHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHhccCCchHHH-----HHHHHHHHHHcCChhHHHHHHHHHHHHC-C-----CCHHHHHHHHHHHHh
Confidence 4567899999999998763221112 222333 235899999999999988754 3 234667888888877
Q ss_pred CCChhHHHHHHHHHHHHHhhc--cchhhhHhHHhHHHHhhhcccchHHHHHHHHHHHhhcC
Q psy3481 123 SKNMELLQDFYETTLEALKDA--KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 181 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~--~~~rlf~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~~k 181 (340)
..+.+.....|+.+++..... +...+|.+ .++.....|+...+..+..+....+.
T Consensus 438 ~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~----~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 438 LNEDNNTRVLFERVLTSGSLPPEKSGEIWAR----FLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHH----HHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred CCCHhhHHHHHHHHHhccCCCHHHHHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 777777788899888865432 33567743 22333344666666666666666663
No 195
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=47.48 E-value=1.7e+02 Score=26.76 Aligned_cols=27 Identities=0% Similarity=-0.055 Sum_probs=14.8
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 73 LKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 73 ~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
+-.+..++..+|+++++++.|++-+..
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~ 80 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEEL 80 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344555555556666655555555443
No 196
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=45.78 E-value=29 Score=33.06 Aligned_cols=54 Identities=7% Similarity=0.115 Sum_probs=40.2
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhh
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIK 101 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~ 101 (340)
...++.+|+...+..+..+ .+.+.+..++++.+.+.|+..++++.|++++..+.
T Consensus 183 ~~g~~~~a~~~l~~~~~~~-----P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~ 236 (388)
T 2ff4_A 183 ACGRASAVIAELEALTFEH-----PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA 236 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3556778887777777665 24455778888888888888888888888877663
No 197
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=43.34 E-value=1.1e+02 Score=28.25 Aligned_cols=120 Identities=7% Similarity=0.019 Sum_probs=74.6
Q ss_pred ccCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhc
Q psy3481 43 KEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIST 122 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~ 122 (340)
...+.++|.+.|+.++... + .+. +.-.+.-++++.+++++++..+++...+ +.+..+-.+.-.+-....
T Consensus 114 ~~g~y~eA~~~l~~~~~~~-p---~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~-----~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 114 AQGNYADAMEALEAAPVAG-S---EHL--VAWMKAVVYGAAERWTDVIDQVKSAGKW-----PDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHTCHHHHHHHHTSSCCTT-C---HHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGC-----SCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcC-C---chH--HHHHHHHHHHHcCCHHHHHHHHHHhhcc-----CCcccHHHHHHHHHHHHH
Confidence 3557899999999988755 2 233 5566667999999999999988744221 122212222333322221
Q ss_pred CCChhHHHHHHHHHHHHHhhccchhh----hHhHHhHHHHhhhcccchHHHHHHHHHHHhh
Q psy3481 123 SKNMELLQDFYETTLEALKDAKNDRL----WFKTNTKLGKLYFDREDFNKLSRILKQLHQS 179 (340)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~rl----f~k~n~kL~~l~~~m~~~~~lp~~l~~lH~~ 179 (340)
.- ..++..+++++.+..... ....-..++.++..+++....-..|.++...
T Consensus 183 ~L------G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 183 NL------ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HT------TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HC------CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 11 123344444443321111 4445678899999999999999999999876
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=41.81 E-value=35 Score=29.00 Aligned_cols=47 Identities=13% Similarity=0.151 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhc-----------CHHHHHHHHHHHHH
Q psy3481 47 PKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLS-----------NYKEMMSRYKQLLL 98 (340)
Q Consensus 47 ~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~-----------~~~~~~~~~~~l~~ 98 (340)
.++|++.|++.+..++ + .-.|+-.+...|.++| ++++.+++|++-+.
T Consensus 62 ~~eAi~~le~AL~ldP-~----~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 62 IQEAITKFEEALLIDP-K----KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHHHHHHHHHCT-T----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-C----cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 5799999999999883 2 2235567888888775 77777777777766
No 199
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=41.62 E-value=4.3e+02 Score=30.60 Aligned_cols=136 Identities=10% Similarity=0.195 Sum_probs=72.3
Q ss_pred ccCCHHHHHHHHHhhccccc--ccch---------------hhHHHHHH--------HHHHHHhhhcCHHHHHHHHHHHH
Q psy3481 43 KEDDPKAALQSFQKVLDLES--GERG---------------EWGFKALK--------QMIKINFKLSNYKEMMSRYKQLL 97 (340)
Q Consensus 43 ~~~~~~~a~~~~~~v~~~~~--~~~~---------------~w~fka~~--------q~~k~~~~~~~~~~~~~~~~~l~ 97 (340)
..++|.+|++.|++++-..+ .++. .-+...+. .+..++...|+++|+...|++.-
T Consensus 997 ~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~ 1076 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD 1076 (1630)
T ss_pred hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 35678999999999994332 0111 11112222 24678899999999999999874
Q ss_pred HHhhhccchhh-HHHHHHHHHHHhhcCCChhHH---------HHHHHHHHHHHhhccchhhhHhHHhHHHHhhhcccchH
Q psy3481 98 LYIKSAVTRNY-SEKSINSILDYISTSKNMELL---------QDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFN 167 (340)
Q Consensus 98 ~~~~~~v~k~~-~~k~i~~ild~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~rlf~k~n~kL~~l~~~m~~~~ 167 (340)
-+. .++..-. .-+....-+++.......+.. +..++-+.++...|++-.-| .+++..+-..+++.
T Consensus 1077 ~~~-~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say----~eVa~~~~~lGkyE 1151 (1630)
T 1xi4_A 1077 VNT-SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSY----MEVVQAANTSGNWE 1151 (1630)
T ss_pred CHH-HHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHH----HHHHHHHHHcCCHH
Confidence 333 2222111 222333334444333221111 11122222222223222222 44677888888999
Q ss_pred HHHHHHHHHHhhcCCC
Q psy3481 168 KLSRILKQLHQSCQTD 183 (340)
Q Consensus 168 ~lp~~l~~lH~~~ktp 183 (340)
.+++.+..-...-+.|
T Consensus 1152 EAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A 1152 ELVKYLQMARKKARES 1167 (1630)
T ss_pred HHHHHHHHHHhhcccc
Confidence 9998887765554444
No 200
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=38.94 E-value=2.6e+02 Score=26.52 Aligned_cols=28 Identities=7% Similarity=-0.025 Sum_probs=21.6
Q ss_pred hHHHHhhhcccchHHHHHHHHHHHhhcC
Q psy3481 154 TKLGKLYFDREDFNKLSRILKQLHQSCQ 181 (340)
Q Consensus 154 ~kL~~l~~~m~~~~~lp~~l~~lH~~~k 181 (340)
..++.++...++...+-.++.+....+.
T Consensus 429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 4567777788888888888888877643
No 201
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=36.16 E-value=87 Score=26.15 Aligned_cols=84 Identities=12% Similarity=0.169 Sum_probs=60.2
Q ss_pred Cccchhhhhhccccccc-cCCH---HHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhh
Q psy3481 27 EPDVDLENQYYNSKALK-EDDP---KAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKS 102 (340)
Q Consensus 27 ~~~~~lEn~y~~ak~~~-~~~~---~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~ 102 (340)
.+.|..+.+|.-|-++. +.++ ..+|..+++++..+ + +-.-..+..+.-=++|.|+|++.+.+...+|..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~---~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--- 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-E---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--- 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-G---GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-c---chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---
Confidence 35566666666665653 3344 58999999998765 2 235567888899999999999999999888763
Q ss_pred ccchhhHHHHHHHHHH
Q psy3481 103 AVTRNYSEKSINSILD 118 (340)
Q Consensus 103 ~v~k~~~~k~i~~ild 118 (340)
=+-|.-+++++.+|+
T Consensus 108 -eP~N~QA~~Lk~~Ie 122 (134)
T 3o48_A 108 -ERNNKQVGALKSMVE 122 (134)
T ss_dssp -CTTCHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHH
Confidence 245666777777776
No 202
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=36.09 E-value=74 Score=26.92 Aligned_cols=83 Identities=11% Similarity=0.133 Sum_probs=61.6
Q ss_pred cchhhhhhccccccc-cCCH---HHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhcc
Q psy3481 29 DVDLENQYYNSKALK-EDDP---KAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAV 104 (340)
Q Consensus 29 ~~~lEn~y~~ak~~~-~~~~---~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v 104 (340)
.+..+.+|.-|-++. +.++ ..+|..+++++..+ ++ -.=..+..+.-=++|.|+|++.+.+...+|.. =
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~~---~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~----e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ES---RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----E 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-CS---THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT----C
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cc---chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----C
Confidence 567777777776663 3344 68999999999865 32 23447889999999999999999999988763 2
Q ss_pred chhhHHHHHHHHHHH
Q psy3481 105 TRNYSEKSINSILDY 119 (340)
Q Consensus 105 ~k~~~~k~i~~ild~ 119 (340)
+.|.-+++++.+|+-
T Consensus 108 P~n~QA~~Lk~~Ie~ 122 (144)
T 1y8m_A 108 RNNKQVGALKSMVED 122 (144)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 456677777777763
No 203
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=35.04 E-value=23 Score=23.31 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHHhhhccch
Q psy3481 85 NYKEMMSRYKQLLLYIKSAVTR 106 (340)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~v~k 106 (340)
-.++|..+|..|+.|| ..|||
T Consensus 13 ~~Eela~Y~~~LrhYi-NlvTR 33 (36)
T 2bf9_A 13 PVEDLIRFYNDLQQYL-NVVTR 33 (36)
T ss_dssp CHHHHHHHHHHHHHHH-HHHTT
T ss_pred CHHHHHHHHHHHHHHH-HHHhc
Confidence 4588999999999999 77887
No 204
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=31.21 E-value=1.5e+02 Score=27.75 Aligned_cols=60 Identities=18% Similarity=0.345 Sum_probs=42.1
Q ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHH
Q psy3481 48 KAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEK 111 (340)
Q Consensus 48 ~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k 111 (340)
+++++.++++++.+ ++ ..|..+++--+....-..+..+++.+.+.+|.. + ...-|++=..
T Consensus 255 ~~el~~~~elle~~-pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~-Dp~r~~~y~d 314 (331)
T 3dss_A 255 QSELESCKELQELE-PE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA-V-DPMRAAYLDD 314 (331)
T ss_dssp HHHHHHHHHHHHHC-TT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH-H-CGGGHHHHHH
T ss_pred HHHHHHHHHHHhhC-cc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHH-h-CcchhhHHHH
Confidence 79999999999988 44 389877776555555566788888888888865 2 3444444333
No 205
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=30.30 E-value=24 Score=23.17 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhccch
Q psy3481 86 YKEMMSRYKQLLLYIKSAVTR 106 (340)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~v~k 106 (340)
.++|..+|..|+.|| ..|||
T Consensus 14 pEela~Y~~~Lr~Yi-NlvTR 33 (36)
T 1bba_A 14 PEQMAQYAAELRRYI-NMLTR 33 (36)
T ss_dssp TTHHHHHHHHHHHHH-HHHCC
T ss_pred HHHHHHHHHHHHHHH-HHhhc
Confidence 578999999999999 77877
No 206
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=29.08 E-value=34 Score=23.10 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=19.4
Q ss_pred cCHHHHHHHHHHHHHHhhhccchh
Q psy3481 84 SNYKEMMSRYKQLLLYIKSAVTRN 107 (340)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~v~k~ 107 (340)
...++|.++|..|+.|+ ..|||-
T Consensus 16 aspEela~Y~~~Lr~Yi-nlvTR~ 38 (41)
T 2l60_A 16 LSPEELNRYYASLRHYL-NLVTRQ 38 (41)
T ss_dssp SCHHHHHHHHHHHHHHH-HHHTTT
T ss_pred CCHHHHHHHHHHHHHHH-HHhccc
Confidence 45688999999999999 788873
No 207
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=28.84 E-value=2e+02 Score=22.70 Aligned_cols=66 Identities=21% Similarity=0.208 Sum_probs=41.4
Q ss_pred HHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhccc-hhh
Q psy3481 77 IKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKN-DRL 148 (340)
Q Consensus 77 ~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~~-~rl 148 (340)
.+-+.+.|+|++.+++.++-..|+..+.....+++..-++ +. .-+...++.++..+-.+.++. +||
T Consensus 22 Ae~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa~~SL-qL-----Qrd~HlKQ~~liq~r~k~~~~ee~l 88 (97)
T 2crb_A 22 ADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSL-EL-----QRDSHMKQLLLIQERWKRAKREERL 88 (97)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH-HH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH-HH-----HHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3556788999999999999999997666555666643322 10 012223456666665555532 444
No 208
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=28.84 E-value=20 Score=23.74 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHHhhhccchh
Q psy3481 85 NYKEMMSRYKQLLLYIKSAVTRN 107 (340)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~v~k~ 107 (340)
..++|.++|..|+.|+ ..|||-
T Consensus 13 ~pEela~Y~~~Lr~Yi-nlvTRq 34 (37)
T 1f8p_A 13 PAEDLARYYSALRHYI-NLITRQ 34 (37)
T ss_dssp TTTTHHHHHHHHHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HHhccc
Confidence 3578999999999999 778873
No 209
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=28.62 E-value=3.7e+02 Score=31.16 Aligned_cols=56 Identities=20% Similarity=0.276 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy3481 72 ALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLE 138 (340)
Q Consensus 72 a~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~ 138 (340)
...|+.|.+.+.|+++++.+.|.+ +.-..+| ..+.+.+....+.+.+-+++..+++
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiK------AdD~say-----~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSY-----MEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHh------cCChHHH-----HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344888888889999998888733 2222222 2255555555455555455555444
No 210
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=26.71 E-value=4.2e+02 Score=25.16 Aligned_cols=68 Identities=10% Similarity=-0.054 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHHhhh-ccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcc
Q psy3481 73 LKQMIKINFKLSNYKEMMSRYKQLLLYIKS-AVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAK 144 (340)
Q Consensus 73 ~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~-~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (340)
|.+-.+++.+.|++.-..++-..++.-... .+. ..+.++..|++.++..+..+.- -.....++|+|++
T Consensus 58 L~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~--~~~~~~~rL~~L~~~~~~~~p~--r~~fi~~ai~WS~ 126 (336)
T 3lpz_A 58 LASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQR--VDGASRGKLLGCLRLFQPGEPV--RKRFVKEMIDWSK 126 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHTTSCTTCHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHHh
Confidence 445556666667666555555444443321 111 3456888888888877654321 3566778888875
No 211
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=24.50 E-value=1.6e+02 Score=27.08 Aligned_cols=63 Identities=10% Similarity=-0.108 Sum_probs=39.3
Q ss_pred hhccccccc-cCCHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q psy3481 35 QYYNSKALK-EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLY 99 (340)
Q Consensus 35 ~y~~ak~~~-~~~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~ 99 (340)
.|+-+..+. -.+.++|++.|++++..+.+ ..-...++-...-++.++|+.++....|++++..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~--P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAG--EACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTT--TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCC--ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344444443 34567888888877643210 1114456667777788888888888888887663
No 212
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.81 E-value=4.9e+02 Score=24.98 Aligned_cols=103 Identities=12% Similarity=0.139 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH-Hhhccchhhh
Q psy3481 71 KALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEA-LKDAKNDRLW 149 (340)
Q Consensus 71 ka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~~-~~~~~~~rlf 149 (340)
+--..+++++...|++.++.+.+.++..-+.....|.+--..+-..+..+....|....+..+..+... ........+-
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 445678899999999999999999998776666665433333333333333333333333333332221 1222223444
Q ss_pred HhHHhHHHHhhhcccchHHHHHHH
Q psy3481 150 FKTNTKLGKLYFDREDFNKLSRIL 173 (340)
Q Consensus 150 ~k~n~kL~~l~~~m~~~~~lp~~l 173 (340)
++...=.++++..-++|..+-.-+
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 443333444444445555444333
No 213
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=22.32 E-value=1.6e+02 Score=22.87 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=24.2
Q ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHhh----hcCHHHHHHHHHHHHH
Q psy3481 48 KAALQSFQKVLDLESGERGEWGFKALKQMIKINFK----LSNYKEMMSRYKQLLL 98 (340)
Q Consensus 48 ~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~----~~~~~~~~~~~~~l~~ 98 (340)
++|++.|++..+... -.|.-.+..+|.. .+++++.+.+|++...
T Consensus 42 ~~A~~~~~~Aa~~g~-------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 42 QKLFQYLSKACELNS-------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG 89 (138)
T ss_dssp HHHHHHHHHHHHTTC-------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc
Confidence 336666666655430 1455555666655 5666666666665544
No 214
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=21.72 E-value=3e+02 Score=23.37 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=46.6
Q ss_pred HHHhhcccccccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcC----C-Chh
Q psy3481 53 SFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS----K-NME 127 (340)
Q Consensus 53 ~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~----~-~~~ 127 (340)
.+++.|.+..++. +++--.|||+-.+.. ++=.+.+.+.+.-+ ..| |+ ..+.++.||+.+... . +.+
T Consensus 21 ~L~~Lirs~~PeD----L~~AN~LiK~m~~~d--~~r~e~~~k~~seL-e~V-~~-nv~LL~EML~~~~pg~~~~~~d~E 91 (158)
T 1naf_A 21 MLARLLKSSHPED----LRAANKLIKEMVQED--QKRMEKISKRVNAI-EEV-NN-NVKLLTEMVMSHSQGGAAAGSSED 91 (158)
T ss_dssp HHHHHHSSCSTTH----HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-HHH-HH-HHHHHHHHHHHTTTC-----CCTT
T ss_pred HHHHHHhcCChhh----HHHHHHHHHHHhccc--hhhHHHHHHHHHHH-HHH-HH-HHHHHHHHHHhcCCCcCCCcccHH
Confidence 6788888763443 444445555555432 22244455555544 223 22 567889999987643 1 558
Q ss_pred HHHHHHHHHHHH
Q psy3481 128 LLQDFYETTLEA 139 (340)
Q Consensus 128 ~~~~~~~~~~~~ 139 (340)
.+++.|+.|..+
T Consensus 92 ll~eL~~~Ck~~ 103 (158)
T 1naf_A 92 LMKELYQRCERM 103 (158)
T ss_dssp HHHHHHHHHHTH
T ss_pred HHHHHHHHHHHH
Confidence 889999999764
No 215
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=21.23 E-value=5e+02 Score=24.16 Aligned_cols=92 Identities=13% Similarity=-0.007 Sum_probs=49.3
Q ss_pred HHHHHHHhhccccc-ccchhhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhcCCChh
Q psy3481 49 AALQSFQKVLDLES-GERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNME 127 (340)
Q Consensus 49 ~a~~~~~~v~~~~~-~~~~~w~fka~~q~~k~~~~~~~~~~~~~~~~~l~~~~~~~v~k~~~~k~i~~ild~~~~~~~~~ 127 (340)
+|-|.++.+...-. ..+-.-.-.-|.+-.+.+.+.|++....++-..++.-...+ .-...+.++..|++.++..+..+
T Consensus 31 EAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~-~~~~~~~~~~rl~~l~~~~p~~~ 109 (312)
T 2wpv_A 31 EAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLA-EVKVDDISVARLVRLIAELDPSE 109 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCCSHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCCC
Confidence 45555555554321 12223334445555667777777776665554444443211 11224667778888877654333
Q ss_pred -HHHHHHHHHHHHHhhcc
Q psy3481 128 -LLQDFYETTLEALKDAK 144 (340)
Q Consensus 128 -~~~~~~~~~~~~~~~~~ 144 (340)
.. .....++|+|++
T Consensus 110 ~~r---~~fi~~ai~WS~ 124 (312)
T 2wpv_A 110 PNL---KDVITGMNNWSI 124 (312)
T ss_dssp TTH---HHHHHHHHHHHH
T ss_pred chH---HHHHHHHHHHHh
Confidence 23 455567888874
No 216
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=20.58 E-value=2.8e+02 Score=22.78 Aligned_cols=46 Identities=9% Similarity=0.032 Sum_probs=20.3
Q ss_pred CHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHhh----hcCHHHHHHHHHHHHH
Q psy3481 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFK----LSNYKEMMSRYKQLLL 98 (340)
Q Consensus 46 ~~~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~----~~~~~~~~~~~~~l~~ 98 (340)
|+++|++.|++..+.. --.|.-.+..++.. .+++++.+.+|++...
T Consensus 68 ~~~~A~~~~~~A~~~g-------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAG-------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp CHHHHHHHHHHHHHTT-------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 4455555555544332 01234444444444 4444444444444443
No 217
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=20.19 E-value=5.3e+02 Score=23.99 Aligned_cols=120 Identities=12% Similarity=0.036 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHhhh--------------cCHHHHHHHHHHHHHHhhhccchhhHHHH-
Q psy3481 48 KAALQSFQKVLDLESGERGEWGFKALKQMIKINFKL--------------SNYKEMMSRYKQLLLYIKSAVTRNYSEKS- 112 (340)
Q Consensus 48 ~~a~~~~~~v~~~~~~~~~~w~fka~~q~~k~~~~~--------------~~~~~~~~~~~~l~~~~~~~v~k~~~~k~- 112 (340)
+++++.+.+.++..+....-|.++.. +..+. +.+++-++++.+.+.. -+.+.++=.
T Consensus 162 ~eel~~~~~~I~~~p~N~SAW~~R~~-----ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~----~P~d~SaW~Y 232 (331)
T 3dss_A 162 AEELAFTDSLITRNFSNYSSWHYRSC-----LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT----DPNDQSAWFY 232 (331)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHH-----HHHHHSCCC------CCCHHHHHHHHHHHHHHHHH----STTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHH-----HHHHhhhccccccccccchHHHHHHHHHHHHHHHh----CCCCHHHHHH
Confidence 55666666666655434445555432 11111 3355555555554331 233444443
Q ss_pred HHHHHHHhhcCCC-----hhHHHHHHHHHHHHHhhccchhhhHh-HHhHHHHhhhcccchHHHHHHHHHHH
Q psy3481 113 INSILDYISTSKN-----MELLQDFYETTLEALKDAKNDRLWFK-TNTKLGKLYFDREDFNKLSRILKQLH 177 (340)
Q Consensus 113 i~~ild~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~rlf~k-~n~kL~~l~~~m~~~~~lp~~l~~lH 177 (340)
.+.++......+. .+.+++.++.+.+.++...+. -|.- +-+-+.+..=..+....+-.+++++-
T Consensus 233 ~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 233 HRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp HHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 4555554322111 145688888888888866544 3442 22222222212344455555665554
Done!