RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3481
(340 letters)
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha
solenoid, regulatory PART LID, hydrolase, protein
binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Length = 394
Score = 159 bits (403), Expect = 8e-46
Identities = 53/289 (18%), Positives = 97/289 (33%), Gaps = 64/289 (22%)
Query: 57 VLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIK---SAVTRNYSEKSI 113
V D E E E + +Q I +L + L+ + S++++ + K +
Sbjct: 2 VRDQEGAENDEERIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLV 61
Query: 114 NSILDYIST-SKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRI 172
S++D + + +E K K L +L LYFD + + +
Sbjct: 62 RSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALAL 121
Query: 173 LKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAI-PH 231
QL + + D ++ L+E+ LE + Y A N K + + +AI
Sbjct: 122 GAQLLRELKKLDDKN------LLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175
Query: 232 PLIMGVIRGLFVIEAHEQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWM 291
P + G +
Sbjct: 176 PKVQGALD---------------------------------------------------- 183
Query: 292 ALECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340
L+ G E +F+ A + F+EAF+ +D S + T LKY++L +
Sbjct: 184 -LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI 231
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell
membrane, membrane, transmembrane, transport protein;
HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB:
3gi9_C* 3gi8_C
Length = 444
Score = 59.2 bits (144), Expect = 6e-10
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 255 RFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMAL 293
R ++ + F+ L +F + + II +
Sbjct: 372 RKEIVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIATFI 410
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export,
transcription; 2.12A {Homo sapiens}
Length = 203
Score = 48.8 bits (116), Expect = 4e-07
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 297 GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 340
G+ + + +F++A AF++ S + L YL+ M
Sbjct: 21 GRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKM 64
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 44.9 bits (106), Expect = 2e-05
Identities = 20/194 (10%), Positives = 65/194 (33%), Gaps = 15/194 (7%)
Query: 34 NQYYNSKALKEDDPKAALQSFQKVLDL--ESGERGEWGFKALKQMIKINFKLSNYKEMMS 91
+ N+K L++ A ++ + + + KA +Q + L E +
Sbjct: 44 VAFKNAKQLEQ-----AKDAYLQEAEAHANNRSLFHAA-KAFEQAGMMLKDLQRMPEAVQ 97
Query: 92 RYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFK 151
++ + T + + +++ + + + Y+ ++ + R +
Sbjct: 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVH-LYQQAAAVFENEERLRQAAE 156
Query: 152 TNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKN 211
K +L ++ F++ + L++ + + K ++ + + +
Sbjct: 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK------KCIAQVLVQLHRAD 210
Query: 212 NKKLKKLYEQSLHI 225
+K +S I
Sbjct: 211 YVAAQKCVRESYSI 224
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 1e-04
Identities = 49/308 (15%), Positives = 95/308 (30%), Gaps = 104/308 (33%)
Query: 44 EDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSA 103
+D+P + K L G+ ++ + + ++ Q+L +
Sbjct: 51 DDEPTTPAELVGKFL----------GY--------VSSLVE--PSKVGQFDQVLNLCLTE 90
Query: 104 VTRNY-SEKSINSI---LDYISTS---KNMELLQDFYE---TTLEALKDAKNDRLWFKTN 153
Y I+++ L + + K EL++++ N L+
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 154 TKLGKLY--F----DRED-FNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMY 206
+L F + +D F +L R L Q + D +K + L
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEEL-RDLYQTYHVLV----GDLIKFSAETLSELI------ 199
Query: 207 TAQKNNKKLKKLYEQSLHIKSAIPH-----------------PLIMGVIR-GLFVIEAHE 248
+ +K++ Q L+I + + PLI GVI+ +V+ A
Sbjct: 200 ---RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI-GVIQLAHYVVTAKL 255
Query: 249 QNMEGLRFKVP--LVPFVPGLSI-------------------FFNIELMANLNVLTWLRF 287
G P L ++ G + FF A +T L F
Sbjct: 256 L---GFT---PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA----ITVL-F 304
Query: 288 IIWMALEC 295
++ + C
Sbjct: 305 --FIGVRC 310
Score = 32.3 bits (73), Expect = 0.29
Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 51/160 (31%)
Query: 49 AALQSFQKVLDLESG-----ERGEWGFKALKQMI-KINFKLSNYKEMMSRYKQLLLYIKS 102
AAL S V+ +ES RG ++ + + SNY M++
Sbjct: 1768 AALASLADVMSIESLVEVVFYRG----MTMQVAVPRDELGRSNYG-MIAI-------NPG 1815
Query: 103 AVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYF- 161
V ++S++++ +++ + L++ N N + + Y
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTG-WLVE------------IVNY------NVE-NQQYVA 1855
Query: 162 --DREDFNKLSRILK----------QLHQSCQTDDGEDDL 189
D + ++ +L +L +S ++ E L
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 27.7 bits (61), Expect = 7.8
Identities = 16/103 (15%), Positives = 25/103 (24%), Gaps = 40/103 (38%)
Query: 9 MCDEEEDYGLEYSEDSNSEPDVDLE--NQYYNSKALKEDDP---------KAALQSFQKV 57
E Y +E +E N YN AL + V
Sbjct: 1821 FSQEALQYVVERVGKRTGWL---VEIVN--YNV-------ENQQYVAAGDLRALDTVTNV 1868
Query: 58 LDLESGERGEWGFKALKQMIKINFKLSNYKEMMS--RYKQLLL 98
L +K KI + ++ +S + L
Sbjct: 1869 L------------NFIKLQ-KI--DIIELQKSLSLEEVEGHLF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 3e-04
Identities = 25/179 (13%), Positives = 59/179 (32%), Gaps = 31/179 (17%)
Query: 12 EEEDYGLEYSEDSNSEPDVDLENQYYNSKALKEDDPKAALQSFQKVLDL------ESGER 65
+ L E + L +Y + + +D P+ L + + L + +
Sbjct: 292 DHHSMTLTPDE---VK---SLLLKYLDCRP--QDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 66 GE-W---GFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIS 121
+ W L +I+ + + E + +L ++ SA + ++ I +
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA---HIPTILLSLIWFDVI 400
Query: 122 TSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 180
S M ++ ++ +L K K + + +Y + LH+S
Sbjct: 401 KSDVMVVVNKLHKYSL-VEKQPKESTI------SIPSIYL---ELKVKLENEYALHRSI 449
Score = 40.6 bits (94), Expect = 7e-04
Identities = 40/314 (12%), Positives = 94/314 (29%), Gaps = 109/314 (34%)
Query: 23 DSNSEPDVDLENQYYNSKALKEDDPKAALQSFQKVLDLESGERGEWGFKAL-KQMIKIN- 80
+ + + L++ +S L D+ K LD + L ++++ N
Sbjct: 282 SAATTTHISLDH---HSMTLTPDE---VKSLLLKYLDCRPQD--------LPREVLTTNP 327
Query: 81 FKLS----NYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFY--- 133
+LS + ++ ++ + +T I S L+ + ++ ++
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTT-----IIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 134 ------ETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGED 187
L +WF + D ++ +LH+ E
Sbjct: 383 PSAHIPTILLS--------LIWFD------VIKSDVMV------VVNKLHKYSLV---EK 419
Query: 188 DLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRGLFVIEAH 247
K+ T + I ++ +++ K+K E +LH +++ H
Sbjct: 420 QPKEST--ISIPSIYLEL--------KVKLENEYALHRS----------------IVD-H 452
Query: 248 EQNMEGLRFKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMALECGGKMHLREGEFE 307
+ + P++ F++ I HL+ E
Sbjct: 453 YNIPKTFDSDDLIPPYLDQY--FYS--------------HIGH---------HLKNIEHP 487
Query: 308 KAHTDFFEAFKNYD 321
+ T F F ++
Sbjct: 488 ERMTLFRMVFLDFR 501
Score = 34.4 bits (78), Expect = 0.057
Identities = 38/247 (15%), Positives = 67/247 (27%), Gaps = 84/247 (34%)
Query: 79 INFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS--------------- 123
++F+ E +YK +L + A N+ K + + I +
Sbjct: 7 MDFETG---EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 124 ----------KNMELLQDFYETTL--------EALKDAKN-------------DRLWFKT 152
K E++Q F E L +K + DRL+
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-ND 122
Query: 153 NTKLGKLYFDR-EDFNKLSRILKQL--------H------------QSCQTDDGEDD--- 188
N K R + + KL + L +L C + +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 189 ----LKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPL--IMGVIRGLF 242
L LE+ QK ++ + S I + I +R L
Sbjct: 183 KIFWLNLKNCNSPETVLEML----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 243 VIEAHEQ 249
+ +E
Sbjct: 239 KSKPYEN 245
Score = 33.7 bits (76), Expect = 0.091
Identities = 47/284 (16%), Positives = 82/284 (28%), Gaps = 70/284 (24%)
Query: 8 FMCD-EEEDYGLEYSEDSNSEPDVDLENQYYNSK--ALKEDD---PKAALQSFQKVLDLE 61
F+ + +Y S + + + Y + L D+ K + Q L L
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 62 SG----ERGEW-------GF----------KALKQMIKINFK-----LSNYKEMMSRYKQ 95
+ G + K K++FK L N + +
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 96 L--LLYI--KSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLW-- 149
L LLY + +R+ +I + I L YE L L + +N + W
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 150 FKTNTKL-----GKLYFDREDFNKLSRI-LKQLHQSCQTDDGE-----------DDLKKG 192
F + K+ K D + I L + D+ + DL +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR- 320
Query: 193 TQLLEIYALEIQM-------------YTAQKNNKKLKKLYEQSL 223
++L + + N KL + E SL
Sbjct: 321 -EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound,
amino-acid transport, cell inner membrane, cell
membrane, membrane; HET: ARG BNG; 3.00A {Escherichia
coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A
3ncy_A
Length = 445
Score = 41.2 bits (97), Expect = 3e-04
Identities = 3/38 (7%), Positives = 11/38 (28%)
Query: 256 FKVPLVPFVPGLSIFFNIELMANLNVLTWLRFIIWMAL 293
P V ++ + I + + + + +
Sbjct: 382 KARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMV 419
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 39.6 bits (92), Expect = 8e-04
Identities = 31/220 (14%), Positives = 60/220 (27%), Gaps = 16/220 (7%)
Query: 34 NQYYNSKALKEDDPKAALQSFQKVLDL--ESGERGEWGFKALKQMIKINFKLSNYKEMMS 91
Y K L A SF K D ++G E G + K N +
Sbjct: 45 TIYRLRKELNL-----AGDSFLKAADYQKKAGNEDEAG-NTYVEAYKCFKSGGNSVNAVD 98
Query: 92 RYKQLL-LYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWF 150
+ + ++ R + + + D YE E ++ L
Sbjct: 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158
Query: 151 KTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQK 210
K K L + + S I +L +S + K + + + A
Sbjct: 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK-----DYFLKKGLCQLAAT 213
Query: 211 NNKKLKKLYEQSLHIKSAIPHPLIMGVIRGLFVIEAHEQN 250
+ + ++ ++ L I+A +
Sbjct: 214 DAVAAARTLQEGQSEDPNFADSRESNFLKSL--IDAVNEG 251
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 36.7 bits (85), Expect = 0.009
Identities = 29/229 (12%), Positives = 68/229 (29%), Gaps = 12/229 (5%)
Query: 18 LEYSEDSNSEPDVDLENQYYNSKALKED---DPKAALQSFQKVLDLESGERGEWGF-KAL 73
LE E + L+ + + E + A+ +++ + +
Sbjct: 85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFH 144
Query: 74 KQMIKINFKLSNYKEMMSRYKQ-LLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDF 132
++ + + + M Q L +Y + + +S+ I K+ +
Sbjct: 145 FKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPH 204
Query: 133 YETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKG 192
E LE D +NDR + + Y D ++ ++ + +
Sbjct: 205 LEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM---AVEHFQKAAKVSREKVP---- 257
Query: 193 TQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRGL 241
L ++ +K + E+ L +A H + L
Sbjct: 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFL 306
Score = 36.3 bits (84), Expect = 0.010
Identities = 13/123 (10%), Positives = 33/123 (26%), Gaps = 5/123 (4%)
Query: 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVT 105
D + A++ FQK + + + K L + K ++ ++ L
Sbjct: 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL-----DHI 291
Query: 106 RNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDRED 165
S K + ++ + + L + ++
Sbjct: 292 TARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCH 351
Query: 166 FNK 168
F +
Sbjct: 352 FEQ 354
Score = 28.6 bits (64), Expect = 3.1
Identities = 15/150 (10%), Positives = 45/150 (30%), Gaps = 14/150 (9%)
Query: 81 FKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEAL 140
+ + + + +++ + V K + + + + + F E L+ +
Sbjct: 233 DRSGDDQMAVEHFQKAAKVSREKVPDLLP-KVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291
Query: 141 KDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYA 200
+ L +Y + D K+ +L + +E A
Sbjct: 292 TARSHKFYKELFLF-LQAVYKETVDERKIHDLLSYFEKKNLHAY-----------IEACA 339
Query: 201 LEI-QMYTAQKNNKKLKKLYEQSLHIKSAI 229
++ + + ++ Y + L + I
Sbjct: 340 RSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369
Score = 27.1 bits (60), Expect = 8.3
Identities = 31/229 (13%), Positives = 68/229 (29%), Gaps = 43/229 (18%)
Query: 34 NQYYNSKALKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRY 93
N++Y +++ A +V ++QM + L Y M R+
Sbjct: 17 NEWYK--MIRQFSVPDAEILKAEVEQD------------IQQMEEDQDLLIYYSLMCFRH 62
Query: 94 KQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQD---------------------- 131
+ +L Y++ T + + K + L
Sbjct: 63 QLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIG 122
Query: 132 FYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKK 191
+Y + L +D + + K+ + Y+ + + + + Q+
Sbjct: 123 YYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHV---SMYHILQALDIYQNHPLYSI 179
Query: 192 GT-QLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIR 239
T Q L + A Y K+ K E +L + I + + +
Sbjct: 180 RTIQSLFVIAG---NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISL 225
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 35.3 bits (81), Expect = 0.020
Identities = 20/187 (10%), Positives = 56/187 (29%), Gaps = 8/187 (4%)
Query: 41 ALKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYI 100
A+ + +P A + + L+ A + ++ ++ +Q
Sbjct: 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE--- 80
Query: 101 KSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNT-----K 155
+ A + ++ S++ LQ +ET +A + L
Sbjct: 81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140
Query: 156 LGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKL 215
+L + ++ + + + + L+ L++ + A+ +L
Sbjct: 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 200
Query: 216 KKLYEQS 222
+ L
Sbjct: 201 ENLLGNG 207
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 35.2 bits (81), Expect = 0.026
Identities = 27/249 (10%), Positives = 70/249 (28%), Gaps = 11/249 (4%)
Query: 12 EEEDYGLEYSEDSNSEPDVDLENQYYNSKALKED---DPKAALQSFQKVLDLESGERGEW 68
L + + LE + + + E + +A++ F+K +
Sbjct: 81 PRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRI 140
Query: 69 GF-KALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS-KNM 126
+ +M + + + M +Q K N +S+ K
Sbjct: 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQY 200
Query: 127 ELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGE 186
E ++ + K +L +T +G + + K+ +
Sbjct: 201 EDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE----- 255
Query: 187 DDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEQSLHIKSAIPHPLIMGVIRGLFVIEA 246
+ L + Y L Q++ K + + + + + + L +
Sbjct: 256 -ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL 314
Query: 247 HEQNMEGLR 255
+ E ++
Sbjct: 315 SGPDEEAIQ 323
Score = 30.6 bits (69), Expect = 0.69
Identities = 25/183 (13%), Positives = 61/183 (33%), Gaps = 16/183 (8%)
Query: 50 ALQSFQKVLDL--ESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRN 107
A+ FQK + + G + L + S Y++ + +K+ + + +
Sbjct: 203 AISHFQKAYSMAEAEKQPQLMG-RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261
Query: 108 YSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFN 167
++ I ++ +++ + + A + + L LY D
Sbjct: 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF-LKSLYLSGPDEE 320
Query: 168 KLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEI-QMYTAQKNNKKLKKLYEQSLHIK 226
+ L D LE +A+++ + Y +KN +K + + ++
Sbjct: 321 AIQGFFDFLESKMLYAD-----------LEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369
Query: 227 SAI 229
I
Sbjct: 370 QLI 372
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 30.2 bits (68), Expect = 1.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 41 ALKEDDPKAALQSFQKVLDLESGE 64
L D +A + F +VLD GE
Sbjct: 477 ELLTGDYDSATKHFTEVLDTFPGE 500
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas
reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Length = 224
Score = 28.7 bits (64), Expect = 2.3
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 299 MHLREGEFEKAHTDFF-EAFKNYDESGSPRRTTCLKYL 335
+H +G+ + H D+F + E G R T L YL
Sbjct: 103 LHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYL 140
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Length = 249
Score = 28.7 bits (65), Expect = 2.3
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 95 QLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEA---LKDAKNDRLWFK 151
LL Y + I+ ++ +E L D +E LEA + K
Sbjct: 152 LLLAYEWRRQHDETPPEVIDMARVDFASGLEVEKLGDHFEEKLEAAGFFFPPEK-APGMK 210
Query: 152 TNTK--LGKLYFDREDFNKLSRILKQLHQSCQTDD 184
N + +L R D L +L+Q+ + ++
Sbjct: 211 LNLRNMWARLPLTRADVQTLHGMLRQIAWKLKQEN 245
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 27.7 bits (62), Expect = 6.6
Identities = 27/206 (13%), Positives = 58/206 (28%), Gaps = 34/206 (16%)
Query: 46 DPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVT 105
D +A + FQ + + + Q+ F L +Y + M +K L + ++
Sbjct: 63 DCRAGVAFFQAAIQAGTEDLRTLS-AIYSQLGNAYFYLGDYNKAMQYHKHDLT-LAKSMN 120
Query: 106 RNYSE-KSINSI-LDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDR 163
E KS ++ + E E L + + + LG +Y +
Sbjct: 121 DRLGEAKSSGNLGNTLKVMGRFDEAA-ICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179
Query: 164 EDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIY--ALEIQ----------------- 204
K + + +E Y L++
Sbjct: 180 GKHLGQRNPGKFGDDVKEALT---------RAVEFYQENLKLMRDLGDRGAQGRACGNLG 230
Query: 205 -MYTAQKNNKKLKKLYEQSLHIKSAI 229
Y + + + +++ L I
Sbjct: 231 NTYYLLGDFQAAIEHHQERLRIAREF 256
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 27.4 bits (61), Expect = 8.4
Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 35 QYYNSKA---LKEDDPKAALQSFQKVLDLESGERGEWGFKALKQMIKINFKLSNYKEMMS 91
Q A L+++D A+ F++ DL + + K+ ++ + +
Sbjct: 450 QAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRIRSDPVLAK 509
Query: 92 RYKQ 95
+ ++
Sbjct: 510 KIQE 513
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.391
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,125,046
Number of extensions: 301484
Number of successful extensions: 972
Number of sequences better than 10.0: 1
Number of HSP's gapped: 936
Number of HSP's successfully gapped: 56
Length of query: 340
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 246
Effective length of database: 4,077,219
Effective search space: 1002995874
Effective search space used: 1002995874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)