RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3481
         (340 letters)



>d1jyoe_ d.184.1.2 (E:) Virulence effector SptP domain {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 102

 Score = 26.5 bits (58), Expect = 2.0
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 94  KQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA 143
           +++L     A+T  Y E ++N  L     + N  L Q       E +K A
Sbjct: 42  QKILQTFLHALTEKYGETAVNDALLMSRINMNKPLTQRLAVQITECVKAA 91


>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 497

 Score = 27.1 bits (59), Expect = 4.1
 Identities = 16/170 (9%), Positives = 46/170 (27%), Gaps = 15/170 (8%)

Query: 20  YSEDSNSEPDVDLENQYYNSKALKEDDPKAALQSFQKVLDLES-----------GERGEW 68
                N +    +++      + K+    A ++                       R + 
Sbjct: 109 LCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQT 168

Query: 69  GF--KALKQMIKINFKLSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNM 126
                  +   ++          ++          + +   Y  +SI     + + S N+
Sbjct: 169 SQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI--FYYCRSIAVKFPFPAASTNL 226

Query: 127 ELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQL 176
           +        + + +K       + K   K     +  +   KLS + ++L
Sbjct: 227 QKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276


>d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone, COX17
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 69

 Score = 24.1 bits (52), Expect = 7.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 244 IEAHEQNMEGLRFKVPLV 261
           IE +++ M+G  F+VP  
Sbjct: 51  IEKYKECMKGYGFEVPSA 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,259,189
Number of extensions: 58808
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 29
Length of query: 340
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,226,816
Effective search space: 311611264
Effective search space used: 311611264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)