BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3482
         (279 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AG5|A Chain A, Crystal Structure Of Pantothenate Synthetase From
           Staphylococcus Aureus
 pdb|3AG5|B Chain B, Crystal Structure Of Pantothenate Synthetase From
           Staphylococcus Aureus
 pdb|3AG6|A Chain A, Crystal Structure Of Pantothenate Synthetase From
           Staphylococcus Aureus In Complex With Pantoyl Adenylate
 pdb|3AG6|B Chain B, Crystal Structure Of Pantothenate Synthetase From
           Staphylococcus Aureus In Complex With Pantoyl Adenylate
          Length = 283

 Score = 32.3 bits (72), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 21/169 (12%)

Query: 92  VIEGYRRPAH----------KYETQPPEY--WVPHLLDHIVYSEILDKYLNVPVTQRTVD 139
           V+EG +RP H           +    P+Y  +       +   E + K  N  V    +D
Sbjct: 116 VLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGID 175

Query: 140 LIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRETIYNKYKHYL 199
           ++ E  G  +              A  + + +LLA   + LY D E + + I ++   YL
Sbjct: 176 IVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLA---QALYQDGERQSKVIIDRVTEYL 232

Query: 200 ENYSREDIEWYG-WSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIED 247
           E++  E IE    +S P+  E     + E   R  + L V F K  + D
Sbjct: 233 ESHISERIEEVAVYSYPQLVE-----QHEITGRIFISLAVKFSKARLID 276


>pdb|3B8A|X Chain X, Crystal Structure Of Yeast Hexokinase Pi In Complex With
           Glucose
          Length = 485

 Score = 31.6 bits (70), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 5/127 (3%)

Query: 135 QRTVDLIHEHYGFDEYL----LQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRE- 189
           + T D+  + +G    L    L  R C L    A ++    + A+  K  Y       + 
Sbjct: 359 EDTDDIFQKDFGVKTTLPERKLIRRLCELIGTRAARLAVCGIAAICQKRGYKTGHIAADG 418

Query: 190 TIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLK 249
           ++YNKY  + E  ++   + YGW+   +++ I ++  E  + +   +     ++ I + K
Sbjct: 419 SVYNKYPGFKEAAAKGLRDIYGWTGDASKDPITIVPAEDGSGAGAAVIAALSEKRIAEGK 478

Query: 250 QKKLEGT 256
              + G 
Sbjct: 479 SLGIIGA 485


>pdb|2X3F|A Chain A, Crystal Structure Of The Methicillin-Resistant
           Staphylococcus Aureus Sar2676, A Pantothenate
           Synthetase.
 pdb|2X3F|B Chain B, Crystal Structure Of The Methicillin-Resistant
           Staphylococcus Aureus Sar2676, A Pantothenate Synthetase
          Length = 285

 Score = 31.6 bits (70), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 65/169 (38%), Gaps = 21/169 (12%)

Query: 92  VIEGYRRPAH----------KYETQPPEY--WVPHLLDHIVYSEILDKYLNVPVTQRTVD 139
           V+EG +RP H           +    P+Y  +       +   E + K  N  V    +D
Sbjct: 118 VLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGID 177

Query: 140 LIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRETIYNKYKHYL 199
           ++ E  G  +              A  + + +LLA   + LY D E + + I +K   YL
Sbjct: 178 IVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLA---QALYQDGERQSKVIIDKVTQYL 234

Query: 200 ENYSREDIEWYG-WSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIED 247
           E++    IE    +S P+  E     + E   R  + L V F K  + D
Sbjct: 235 ESHISGRIEEVAVYSYPQLVE-----QHEITGRIFISLAVKFSKARLID 278


>pdb|3ISM|C Chain C, Crystal Structure Of The EndogENDOGI COMPLEX: MECHANISM OF
           ENDOG Inhibition
          Length = 359

 Score = 27.7 bits (60), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 92  VIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNV-------PVTQRTVDLIH 142
           ++E YR  A  Y+  P   W+  L D ++  E+LD + +V       P   R  DL  
Sbjct: 91  LLEEYRGDACFYDPTPYNEWIVKLRDEVLKKELLDFWRDVLVKKQLGPCWSRDSDLFD 148


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.136    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,208,866
Number of Sequences: 62578
Number of extensions: 407872
Number of successful extensions: 1210
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1207
Number of HSP's gapped (non-prelim): 13
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)