BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3482
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VMX0|RM28_DROME 39S ribosomal protein L28, mitochondrial OS=Drosophila melanogaster
GN=mRpL28 PE=1 SV=1
Length = 302
Score = 182 bits (462), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/255 (40%), Positives = 161/255 (63%), Gaps = 9/255 (3%)
Query: 17 KKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKN-AQGVVVPVINYPIP 75
K+ FD + ++LPE+YRKF+ EWK+ P VHY+ + +++++ + PV N P+P
Sbjct: 16 KRPGRFDKGLGAQLPEAYRKFWREWKLTTPAAVHYIPKEQQWERDEVTHAIKPVQNIPLP 75
Query: 76 SKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQ 135
T E GIWGGE+VI+G+++ + + + P +WVP+L +V+S +LD Y++V VT+
Sbjct: 76 LIDTPESHRGIWGGEAVIKGFQK-REQTKRRVPHFWVPNLRRSVVHSHVLDCYMSVVVTE 134
Query: 136 RTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRET-IYNK 194
RT++ IHE +GFD YLL+ RAC+L S +A K+KR++L AL + DE +R+ + +
Sbjct: 135 RTLEQIHECHGFDHYLLKNRACDLRSALALKLKREVLQALQNGVPALADEPERQQEVLKE 194
Query: 195 YKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKLE 254
Y+ YLE Y+ E+I+WYG + EA K+ REAE VP K+ FR ++IE L+Q +
Sbjct: 195 YRRYLEPYTPEEIDWYGHTYLEAIRKLQKQLREAE--KVVPHKLEFRGKLIEQLRQAGIS 252
Query: 255 GTLNLEEEKTKPTSL 269
LE KP +L
Sbjct: 253 EAGKLE----KPDAL 263
>sp|Q2HJJ1|RM28_BOVIN 39S ribosomal protein L28, mitochondrial OS=Bos taurus GN=MRPL28
PE=1 SV=1
Length = 256
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 128/232 (55%), Gaps = 12/232 (5%)
Query: 26 IASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQ-GVVVPVINYPIPSKYTLEQDL 84
I S+LP Y + E + P PVH+ ++K N + G V + PIP Y E L
Sbjct: 20 IYSRLPAHYLRSLEEART--PTPVHFRPHGAKFKINPKNGQRERVEDVPIPVHYPPESQL 77
Query: 85 GIWGGESVIEGYRRPAH-KYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHE 143
G+WGGE ++G+R + K+ + + W P L +YSEILD V VT RT+DLI E
Sbjct: 78 GLWGGEGWLKGHRYVNNDKFSKRVKKVWKPQLFQRELYSEILDTRFTVTVTMRTLDLIDE 137
Query: 144 HYGFDEYLLQTRACNLNSLIACKIKRKMLLAL--YDKTLYPDDETKRETIYNKYKHYLEN 201
YGFD Y+L+T +L S +KR MLL L D L+PDD +R IY+KYK ++
Sbjct: 138 AYGFDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQLHPDDPERRAAIYDKYKAFV-- 195
Query: 202 YSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKL 253
+ EW G +L EA EK +R E + VPL ++ +E++E L+Q+ L
Sbjct: 196 IPEAEAEWVGLTLDEAVEK----QRLLEEKDPVPLFKVYVEELVEQLQQQAL 243
>sp|Q68EV6|RM28_XENLA 39S ribosomal protein L28, mitochondrial OS=Xenopus laevis
GN=mrpl28 PE=2 SV=1
Length = 253
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 130/232 (56%), Gaps = 12/232 (5%)
Query: 26 IASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQ-GVVVPVINYPIPSKYTLEQDL 84
I ++LPE YR+ E KP PVH+ +Y+ N + G V + PI + + +
Sbjct: 20 IYARLPEHYRRSLLE--KHKPYPVHWKPHGLKYRLNPKSGQRERVQDVPILPYFPPQANK 77
Query: 85 GIWGGESVIEGYRRPAH-KYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHE 143
G+WGGE + GY + K + + W P L +YSEILDK ++ VT RT+DLI
Sbjct: 78 GLWGGEGWVTGYHYANNDKLSARVKKVWKPQLFKRELYSEILDKKFSITVTMRTLDLIDA 137
Query: 144 HYGFDEYLLQTRACNLNSLIACKIKRKML--LALYDKTLYPDDETKRETIYNKYKHYLEN 201
YGFD Y+L+T +LNS + KR ML LA D LYP+D +KR+ IYNKYK ++
Sbjct: 138 AYGFDFYILKTPKEDLNSKVGMDFKRAMLMRLASKDSNLYPNDPSKRDQIYNKYKEFV-- 195
Query: 202 YSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKL 253
E+ EW G SL EA EK L+E+ + PL ++ +E+++ ++ + L
Sbjct: 196 IPMEEAEWVGLSLEEAVEKQRLLEK----KDPTPLFKVYVEELVKQIETQTL 243
>sp|Q9D1B9|RM28_MOUSE 39S ribosomal protein L28, mitochondrial OS=Mus musculus GN=Mrpl28
PE=2 SV=3
Length = 257
Score = 127 bits (319), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 127/232 (54%), Gaps = 12/232 (5%)
Query: 26 IASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQ-GVVVPVINYPIPSKYTLEQDL 84
I ++LP + + E + P PVHY ++K N + G V + PIP Y E
Sbjct: 20 ICARLPAHFLRSLEEERT--PTPVHYKPHGTKFKINPKNGQRERVEDVPIPVHYPPESQQ 77
Query: 85 GIWGGESVIEGYRRPAH-KYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHE 143
G+WGGE +I GYR + K + + W P L +YSEILDK V VT RT+DLI E
Sbjct: 78 GLWGGEGLILGYRYANNDKLSKRVKKVWKPQLFTRELYSEILDKKFTVTVTMRTLDLIDE 137
Query: 144 HYGFDEYLLQTRACNLNSLIACKIKRKMLLAL--YDKTLYPDDETKRETIYNKYKHYLEN 201
YGFD Y+L+T +L S +KR MLL L D L+P++ +R IY+KY+ ++
Sbjct: 138 AYGFDFYILKTPKEDLGSKFGMDLKRGMLLRLARQDPHLHPENPERRAAIYDKYRSFV-- 195
Query: 202 YSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKL 253
+ EW G +L EA EK +R E + VPL ++ +E+++ L+++ L
Sbjct: 196 IPEAEAEWVGLTLEEALEK----QRLLEEKDPVPLFKVYVEELVQRLQEQVL 243
>sp|Q13084|RM28_HUMAN 39S ribosomal protein L28, mitochondrial OS=Homo sapiens GN=MRPL28
PE=1 SV=4
Length = 256
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 115/226 (50%), Gaps = 12/226 (5%)
Query: 15 YVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQ-GVVVPVINYP 73
++ K+ I S+LP Y + E + P PVHY ++K N + G V + P
Sbjct: 9 WLWKRLQLREGICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVP 66
Query: 74 IPSKYTLEQDLGIWGGESVIEGYRRPAH-KYETQPPEYWVPHLLDHIVYSEILDKYLNVP 132
IP + E G+WGGE I G + K + + W P L + YSEILDK V
Sbjct: 67 IPIYFPPESQRGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVT 126
Query: 133 VTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLAL--YDKTLYPDDETKRET 190
VT RT+DLI E YG D Y+L+T +L S +KR MLL L D L+P+D +R
Sbjct: 127 VTMRTLDLIDEAYGLDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQLHPEDPERRAA 186
Query: 191 IYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPL 236
IY+KYK + E+ EW G +L EA EK +R E + VPL
Sbjct: 187 IYDKYKEF--AIPEEEAEWVGLTLEEAIEK----QRLLEEKDPVPL 226
>sp|P36525|RM24_YEAST 54S ribosomal protein L24, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRPL24 PE=1
SV=2
Length = 258
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 81 EQDLGIWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDL 140
+ + G++GG V G K +T+ + W+P+++ ++SE L++ +++ +T + +
Sbjct: 68 QSNKGLYGGSFVQFGNNISESKAKTR--KKWLPNVVKKGLWSETLNRKISIKMTAKVLKT 125
Query: 141 IHEHYGFDEYLLQTRACNLNSL 162
I + G D YL + ++ + L
Sbjct: 126 ISKEGGIDNYLTKEKSARIKEL 147
>sp|O60091|RM24_SCHPO 54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mrpl24 PE=3 SV=1
Length = 176
Score = 38.5 bits (88), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 86 IWGGESVIEGYRR-PAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEH 144
++GG G + P ++T+ W+P+ +YS +L++ ++ VT R + I +
Sbjct: 31 LYGGSKTEAGNNKIPKFGHKTR--RVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRTIDKE 88
Query: 145 YGFDEYLLQTRACNLNSL 162
G DEYL+++ L SL
Sbjct: 89 GGLDEYLVKSTPSRLKSL 106
>sp|Q2GKY5|RL28_ANAPZ 50S ribosomal protein L28 OS=Anaplasma phagocytophilum (strain HZ)
GN=rpmB PE=3 SV=1
Length = 103
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 98 RPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRAC 157
+ +H Y V +L + + SE+L + V V RT+ I G D YLL T +
Sbjct: 17 KVSHSNRKTKRSYLV-NLHNVTLVSEVLGRKFRVKVASRTLRTIDYKGGLDLYLLNTSSR 75
Query: 158 NLNSLIACKIKRKMLLAL 175
L +A KIKRK+ +A+
Sbjct: 76 KLTE-VARKIKRKIKVAI 92
>sp|Q6SW04|IRS1_HCMVM Protein IRS1 OS=Human cytomegalovirus (strain Merlin) GN=IRS1 PE=3
SV=1
Length = 847
Score = 33.9 bits (76), Expect = 1.3, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 20 TAFDTEIASKLPESYRKFY----AEWKMEKPKPVHYVEEPGRYKKNAQGVVVPVINYPIP 75
T TE S+LPE Y FY W ME+P P P R K + P ++
Sbjct: 582 TTVMTERQSQLPEKYIGFYQIRKPPWLMEQPPP------PSRQTKPDAATMPPPLSAQAS 635
Query: 76 SKYTLEQDLGIWGGESVIEGYR 97
Y L D W S ++ ++
Sbjct: 636 VSYALRYDDESWRPLSTVDDHK 657
>sp|Q5PAC9|RL28_ANAMM 50S ribosomal protein L28 OS=Anaplasma marginale (strain St.
Maries) GN=rpmB PE=3 SV=2
Length = 103
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 98 RPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRAC 157
+ +H Y V +L + + SE+L + + V RT+ I+ GFD YLL T +
Sbjct: 17 KVSHSNRKTKRSYLV-NLHNVTLVSEVLGRKFKMKVAARTLRTINYKGGFDLYLLNTASR 75
Query: 158 NLNSLIACKIKRKMLLAL 175
L+ A KIKRK+ A+
Sbjct: 76 KLSDE-AQKIKRKIRAAI 92
>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain AD169) GN=IRS1 PE=1
SV=1
Length = 846
Score = 33.5 bits (75), Expect = 1.6, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 20 TAFDTEIASKLPESYRKFY----AEWKMEKPKPVHYVEEPGRYKKNAQGVVVPVINYPIP 75
T TE S+LPE Y FY W ME+P P P R K + P ++
Sbjct: 581 TTVMTERQSQLPEKYIGFYQIRKPPWLMEQPPP------PSRQTKPDAATMPPPLSAQAS 634
Query: 76 SKYTLEQDLGIWGGESVIEGYR 97
Y L D W S ++ ++
Sbjct: 635 VSYALRYDDESWRPLSTVDDHK 656
>sp|B0K1D6|IF2_THEPX Translation initiation factor IF-2 OS=Thermoanaerobacter sp.
(strain X514) GN=infB PE=3 SV=1
Length = 692
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 175 LYDKTLYPDDETKRETIYNKYKHYLENYSRE--------DIEWYGWS-LPEAQEKIILIE 225
+ + TL D T+Y K + L++ R +E G+S +PEA +K+I++E
Sbjct: 391 VQNGTLQIGDAILAGTVYGKVRAMLDDKGRRIKKAGPSMPVEVLGFSEVPEAGDKLIVVE 450
Query: 226 REAEARSKVPLKVLFRKEMIEDLKQKK 252
E +AR + +KEM +LK+K+
Sbjct: 451 DEKKARELAERRKELQKEM--ELKRKQ 475
>sp|P75406|Y375_MYCPN Uncharacterized protein MPN_375 OS=Mycoplasma pneumoniae (strain
ATCC 29342 / M129) GN=MPN_375 PE=4 SV=1
Length = 129
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 185 ETKRETIYNKYKHYLENY--------SREDIEWYGW-SLPEAQEKIILIE-----REAEA 230
ETK Y+K+K+Y +Y + + W W L A +KI+LIE R+A+
Sbjct: 21 ETKYRAGYDKFKYYKTHYRGAKKAGTNDDRWRWTAWFDLDFAHQKIVLIERGELHRQADL 80
Query: 231 RSKVPLKVLFRKEMIEDLKQKKLEGTLNLEEEK 263
+ P K + +K+K L+ NL EK
Sbjct: 81 KKSDPATNETSKTVWGSIKEKLLQNVNNLHSEK 113
>sp|Q2FV22|PANC_STAA8 Pantothenate synthetase OS=Staphylococcus aureus (strain NCTC 8325)
GN=panC PE=1 SV=1
Length = 283
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 21/169 (12%)
Query: 92 VIEGYRRPAH----------KYETQPPEY--WVPHLLDHIVYSEILDKYLNVPVTQRTVD 139
V+EG +RP H + P+Y + + E + K N V +D
Sbjct: 116 VLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGID 175
Query: 140 LIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRETIYNKYKHYL 199
++ E G + A + + +LLA + LY D E + + I ++ YL
Sbjct: 176 IVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLA---QALYQDGERQSKVIIDRVTEYL 232
Query: 200 ENYSREDIEWYG-WSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIED 247
E++ E IE +S P+ E + E R + L V F K + D
Sbjct: 233 ESHISERIEEVAVYSYPQLVE-----QHEITGRIFISLAVKFSKARLID 276
>sp|B6EXY6|LUP4_ARATH Beta-amyrin synthase OS=Arabidopsis thaliana GN=BAS PE=1 SV=2
Length = 759
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 165 CKIKRKMLLALYDKTLYPDDETKRETIY-NKYKHYLENYSREDIEWYG 211
C L+L+ K LYPD T T + K YLEN D WYG
Sbjct: 565 CTSSAIQALSLF-KQLYPDHRTTEITAFIKKAAEYLENMQTRDGSWYG 611
>sp|Q6GDK5|PANC_STAAR Pantothenate synthetase OS=Staphylococcus aureus (strain MRSA252)
GN=panC PE=1 SV=1
Length = 283
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 65/169 (38%), Gaps = 21/169 (12%)
Query: 92 VIEGYRRPAH----------KYETQPPEY--WVPHLLDHIVYSEILDKYLNVPVTQRTVD 139
V+EG +RP H + P+Y + + E + K N V +D
Sbjct: 116 VLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGID 175
Query: 140 LIHEHYGFDEYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRETIYNKYKHYL 199
++ E G + A + + +LLA + LY D E + + I +K YL
Sbjct: 176 IVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLA---QALYQDGERQSKVIIDKVTQYL 232
Query: 200 ENYSREDIEWYG-WSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIED 247
E++ IE +S P+ E + E R + L V F K + D
Sbjct: 233 ESHISGRIEEVAVYSYPQLVE-----QHEITGRIFISLAVKFSKARLID 276
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,274,633
Number of Sequences: 539616
Number of extensions: 5158154
Number of successful extensions: 14080
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 14048
Number of HSP's gapped (non-prelim): 33
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)