RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3482
         (279 letters)



>gnl|CDD|176559 cd08622, PI-PLCXDc_CG14945_like, Catalytic domain of Drosophila
           melanogaster CG14945-like proteins similar to
           phosphatidylinositol-specific phospholipase C, X domain
           containing.  This subfamily corresponds to the catalytic
           domain present in uncharacterized metazoan Drosophila
           melanogaster CG14945-like proteins, which are similar to
           eukaryotic phosphatidylinositol-specific phospholipase
           C, X domain containing proteins (PI-PLCXD). The typical
           eukaryotic phosphoinositide-specific phospholipase C
           (PI-PLC, EC 3.1.4.11) has a multidomain organization
           that consists of a PLC catalytic core domain, and
           various regulatory domains. The catalytic core domain is
           assembled from two highly conserved X- and Y-regions
           split by a divergent linker sequence. In contrast,
           eukaryotic PI-PLCXDs contain a single TIM-barrel type
           catalytic domain, X domain, and are more closely related
           to bacterial PI-PLCs, which participate in
           Ca2+-independent PI metabolism, hydrolyzing the membrane
           lipid phosphatidylinositol (PI) to produce
           phosphorylated myo-inositol and diacylglycerol (DAG).
           Although the biological function of eukaryotic PI-PLCXDs
           still remains unclear, it may distinct from that of
           typical eukaryotic PI-PLCs.
          Length = 276

 Score = 29.2 bits (66), Expect = 2.3
 Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 17/97 (17%)

Query: 66  VVPVINYPIPSKYTLEQDLGIWGGESVIEGYR----RPAHKYETQPPEYWVPHLLDHIVY 121
                N  +  KY L QDL IW    ++ G R    R  + Y   P  +W+ H    +V 
Sbjct: 25  TNSNANESLVDKYLLTQDLDIWT--QLVHGIRYLDLRVGY-YPDSPDNFWINH---DLVR 78

Query: 122 ----SEILDKYLN-VPVTQRTVDL-IHE-HYGFDEYL 151
                 +L+   N V  T   V L  H    GF  + 
Sbjct: 79  IVPLLTVLNDVRNFVQNTGEIVVLDFHRFPVGFHSHP 115


>gnl|CDD|204415 pfam10212, TTKRSYEDQ, Predicted coiled-coil domain-containing
           protein.  This is the C-terminal 500 amino acids of a
           family of proteins with a predicted coiled-coil domain
           conserved from nematodes to humans. It carries a
           characteristic TTKRSYEDQ sequence-motif. The function is
           not known.
          Length = 518

 Score = 28.7 bits (64), Expect = 3.4
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 173 LALYDKTLYPDDETKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIERE---AE 229
            AL ++ +       RE +  + +  LE  S+ + E   W L EAQ   I +E+E     
Sbjct: 289 EALANRRVLLSSTESREGLAQQVQQSLEKISKLEQEKEHWML-EAQLAKIKLEKENQRIA 347

Query: 230 ARSKVPLK-----VLFRKEMIEDLKQKKLEGTLNLEEEKTKPTSLLGKL 273
              K  LK      L     +    ++  E +   E E TK TSL+G L
Sbjct: 348 DLEKGTLKGQLAEKLHENATLTQAHEQPEEFSSKSEREPTKSTSLIGML 396


>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic
           enzyme (ME), subgroup 1.  Malic enzyme (ME), a member of
           the amino acid dehydrogenase (DH)-like domain family,
           catalyzes the oxidative decarboxylation of L-malate to
           pyruvate in the presence of cations (typically  Mg++ or
           Mn++) with the concomitant reduction of cofactor NAD+ or
           NADP+.  ME has been found in all organisms, and plays
           important roles in diverse metabolic pathways such as
           photosynthesis and lipogenesis. This enzyme generally
           forms homotetramers. The conversion of malate to
           pyruvate by ME typically involves oxidation of malate to
           produce oxaloacetate, followed by decarboxylation of
           oxaloacetate to produce pyruvate and CO2.  This
           subfamily consists of eukaryotic and bacterial ME.
           Amino acid DH-like NAD(P)-binding domains are members of
           the Rossmann fold superfamily and include glutamate,
           leucine, and phenylalanine DHs, methylene
           tetrahydrofolate DH, methylene-tetrahydromethanopterin
           DH, methylene-tetrahydropholate DH/cyclohydrolase,
           Shikimate DH-like proteins, malate oxidoreductases, and
           glutamyl tRNA reductase. Amino acid DHs catalyze the
           deamination of amino acids to keto acids with NAD(P)+ as
           a cofactor. The NAD(P)-binding Rossmann fold superfamily
           includes a wide variety of protein families including
           NAD(P)- binding domains of alcohol DHs,
           tyrosine-dependent oxidoreductases,
           glyceraldehyde-3-phosphate DH, lactate/malate DHs,
           formate/glycerate DHs, siroheme synthases,
           6-phosphogluconate DH, amino acid DHs, repressor rex,
           NAD-binding potassium channel  domain, CoA-binding, and
           ornithine cyclodeaminase-like domains. These domains
           have an alpha-beta-alpha configuration. NAD binding
           involves numerous hydrogen and van der Waals contacts.
          Length = 279

 Score = 28.7 bits (65), Expect = 3.5
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 13/67 (19%)

Query: 211 GWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLK----QKKLEGTLNLEE--EKT 264
           G S  EA++KI L++ +        L    RK++    K    + + +   +L E  +  
Sbjct: 52  GLSEEEARKKIWLVDSKG-------LLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAV 104

Query: 265 KPTSLLG 271
           KPT L+G
Sbjct: 105 KPTVLIG 111


>gnl|CDD|166653 PLN03012, PLN03012, Camelliol C synthase.
          Length = 759

 Score = 28.4 bits (63), Expect = 4.4
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 178 KTLYPDDETKRETIY-NKYKHYLENYSREDIEWYG 211
           K LYPD  T+    +  K   Y+EN    D  WYG
Sbjct: 577 KQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYG 611


>gnl|CDD|236212 PRK08270, PRK08270, anaerobic ribonucleoside triphosphate
           reductase; Provisional.
          Length = 656

 Score = 28.7 bits (65), Expect = 4.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 8/38 (21%)

Query: 164 ACKIKRKMLLALYDKTLYPDDETKRETIYNKYKHYLEN 201
           + +IKRK++  L DK LYP   TKR      Y   L N
Sbjct: 438 SLEIKRKVIERLTDKGLYP--YTKR------YLGTLRN 467


>gnl|CDD|213936 TIGR04323, SpoChoClust_1, sporadic carbohydrate cluster protein,
           LIC12192 family.  Members of this uncharacterized
           protein family mark a rare but widely distributed
           carbohydrate biosynthesis cluster found sporadically in
           genera Bradyrhizobium, Leptospira, Magnetospirillum,
           Oscillatoria, Prochlorococcus, etc.
          Length = 122

 Score = 27.3 bits (61), Expect = 4.7
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 173 LALYDKTLYPDDETKRETIYNKY--KHYLENYSREDIEWYGWSLPEAQEKIILIE 225
           +  Y   + P D  KR  IY++   K    +++ ED++       E  E I+L++
Sbjct: 65  IIFYSLFMLPKDSEKRLEIYDRVLNKGASLHFALEDLKLSIEKDIERIEDILLLK 119


>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain. 
          Length = 255

 Score = 27.9 bits (63), Expect = 5.1
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 211 GWSLPEAQEKIILIERE---AEARSKV-PLKVLFRKEMIEDLKQKKLEGTLNLEEEKTKP 266
           G S  EA++ I +++R+    E R  + P K  F ++  E      L   +    +  KP
Sbjct: 52  GLSEEEARKNIWMVDRKGLLTEGREDLNPFKKPFARKTNEVKGWGTLAEAV----KGAKP 107

Query: 267 TSLLG 271
             L+G
Sbjct: 108 DVLIG 112


>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase.  Members of this family,
           including sll0033 (crtH) of Synechocystis sp. PCC 6803,
           catalyze a cis-trans isomerization of carotenes to the
           all-trans lycopene, a reaction that can also occur
           non-enzymatically in light through photoisomerization
           [Biosynthesis of cofactors, prosthetic groups, and
           carriers, Other].
          Length = 493

 Score = 28.2 bits (63), Expect = 5.3
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 6   HLANGARIRYVKKKTAFDTEIASKLP---ESYRKFYAE-WKMEK---PKPVHYVEEPGRY 58
           HL NG  ++  ++   F  E+ +K P   E  R+FY E W++        +  +EEP RY
Sbjct: 91  HLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEP-RY 149


>gnl|CDD|205202 pfam13021, DUF3885, Domain of unknown function (DUF3885).  A
           putative Rac prophage DNA binding protein. This domain
           family is found in bacteria, and is approximately 40
           amino acids in length. There is a conserved YDDRG
           sequence motif. There is a single completely conserved
           residue D that may be functionally important.
          Length = 38

 Score = 24.9 bits (55), Expect = 6.7
 Identities = 7/25 (28%), Positives = 16/25 (64%)

Query: 183 DDETKRETIYNKYKHYLENYSREDI 207
           +++ +   +Y KY  ++ +Y RE+I
Sbjct: 14  NNKERLRDLYEKYNDWILDYDREEI 38


>gnl|CDD|177775 PLN00180, PLN00180, NDF6 (NDH-dependent flow 6); Provisional.
          Length = 180

 Score = 27.1 bits (60), Expect = 8.7
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 11/50 (22%)

Query: 216 EAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQKKLEGTLNLEEEKTK 265
           E QE I     E  AR++     L+R+E+IE+++Q K+ G   LEE  TK
Sbjct: 142 ERQEDI-----EESARAE-----LWREELIEEIEQ-KVGGLRELEEAVTK 180


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0699    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,892,371
Number of extensions: 1453265
Number of successful extensions: 1449
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1448
Number of HSP's successfully gapped: 37
Length of query: 279
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 183
Effective length of database: 6,679,618
Effective search space: 1222370094
Effective search space used: 1222370094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.2 bits)