RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3482
(279 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 1e-04
Identities = 34/232 (14%), Positives = 71/232 (30%), Gaps = 64/232 (27%)
Query: 12 RIRYVKKKTAFDTEIASKLPESYRKFYAE------------------W-KMEKPKPVHYV 52
+ K T ++ + P YRK + W + K + V
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 53 EEPGRY---KKNAQGVVVPV------INYPIPSKYTLEQDLGIWGGESVIEGYRRPA--- 100
+ +Y +K + + + + + ++Y L + S+++ Y P
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR--------SIVDHYNIPKTFD 460
Query: 101 HKYETQPPE--YWVPHLLDHIVYSEILDK-------YLNVPVTQRTVDLIHEHYGFDEYL 151
P Y+ H+ H+ E ++ +L+ ++ + H D
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--IRH-----DSTA 513
Query: 152 LQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRETIYNKYKHYLENYS 203
LN+L L Y + D++ K E + N +L
Sbjct: 514 WNASGSILNTLQQ--------LKFYKPYIC-DNDPKYERLVNAILDFLPKIE 556
Score = 35.2 bits (80), Expect = 0.023
Identities = 45/325 (13%), Positives = 92/325 (28%), Gaps = 96/325 (29%)
Query: 17 KKKTAFDTEIASKLPESYRKFYAEWKMEKPKPVHYVEEPGRYKKNAQGVVVPVINYPIPS 76
K++ + L +Y+ + K E+ +P + Y +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 77 K----------YTL--EQDLGIWG----GESV--IEGYRRPAHKYETQPPE--YWV---- 112
L +++ I G G++ ++ ++K + + +W+
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL--SYKVQCKMDFKIFWLNLKN 191
Query: 113 ---PH--------LLDHIV--YSEILDKYLNVP-----VTQRTVDLIHEH-Y-------- 145
P LL I ++ D N+ + L+ Y
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 146 ---------GFD---EYLLQTRACNLNSLIACKIKRKMLLALYDKTLYPDDETKRETIYN 193
F+ + LL TR + ++ + L + TL P DE K
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKS----- 305
Query: 194 KYKHYLENYSREDIEWYGWSLPEAQEKIILIEREAEARSKVPLKV-LFRKEMIEDLKQKK 252
L Y + LP E + P ++ + + + + L
Sbjct: 306 ----LLLKYLDCRPQ----DLPR------------EVLTTNPRRLSIIAESIRDGLAT-- 343
Query: 253 LEGTLNLEEEKTKPT--SLLGKLNP 275
+ ++ +K S L L P
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEP 368
Score = 30.6 bits (68), Expect = 0.72
Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 48/158 (30%)
Query: 112 VPHLLDHIV----YSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKI 167
+ D V ++ D ++ +++ +D I + + T
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSI-LSKEEIDHI---IMSKDAVSGTL------------ 65
Query: 168 KRKMLLALYDKTLYPDDETKRETIYNKYKHYLENYSREDIEWYGWSL---------PEAQ 218
L +K+E + + ++E R + Y + + P
Sbjct: 66 ---RLFWTL--------LSKQEEMV---QKFVEEVLRIN---YKFLMSPIKTEQRQPSMM 108
Query: 219 EKIILIEREAEARSKVPLKVLF--RKEMIEDLKQKKLE 254
++ + +R+ R + L+Q LE
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.021
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 249 KQ--KKLEGTLNLEEEKTKP 266
KQ KKL+ +L L + + P
Sbjct: 19 KQALKKLQASLKLYADDSAP 38
>3r8s_X 50S ribosomal protein L28; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
2i2v_X 2wwq_0* 3fik_X 3j01_X 3j0t_Z* 3j0w_Z* 3j0y_Z*
3j11_Z* 3j12_Z* 3j14_Z* 3oas_X 3oat_X* 2i2t_X* 3ofd_X
3ofc_X 3ofr_X* 3ofz_X* 3og0_X 3ofq_X 3r8t_X ...
Length = 77
Score = 29.9 bits (68), Expect = 0.19
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 111 WVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRA 156
++P+L H + E +++ + V+ + + +I + G D L + RA
Sbjct: 28 FLPNLHSHRFWVESEKRFVTLRVSAKGMRVI-DKKGIDTVLAELRA 72
>3bbo_Y Ribosomal protein L28; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 151
Score = 29.2 bits (65), Expect = 1.0
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 111 WVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLN 160
+L ++ E +Y+ + ++ + + I E G D + +L+
Sbjct: 102 QFVNLQYKRIWWEAGKRYVKLRLSTKAIKTI-EKNGLDAVAKKAGI-DLS 149
>3alf_A Chitinase, class V; hydrolase; 1.20A {Nicotiana tabacum} PDB:
3alg_A*
Length = 353
Score = 28.4 bits (64), Expect = 2.4
Identities = 5/33 (15%), Positives = 9/33 (27%), Gaps = 3/33 (9%)
Query: 90 ESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYS 122
++V GY L H+ +
Sbjct: 2 QNVKGGYWFKDSGL---ALNNIDSTLFTHLFCA 31
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 2.7
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 205 EDI-EWYGWSLPEAQEKIILIEREAEARSKVPLKVLFRKEMIEDLKQ--KKLEGTL--NL 259
E I +W E Q K + A + + +K++ E ++ +++E N
Sbjct: 85 ESIRKWR-----EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 260 EEEK 263
+K
Sbjct: 140 IADK 143
Score = 27.4 bits (60), Expect = 4.2
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 20/83 (24%)
Query: 166 KIKRKMLLALYDKTLYPDDETKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILIE 225
+ +++ L D + + K K LE EW E EK +
Sbjct: 91 REEQRKRLQELDA----ASKVMEQEWREKAKKDLE-------EWNQ-RQSEQVEKNKINN 138
Query: 226 REAEARSKVPLKVLFRKEMIEDL 248
R A+ F ++ D+
Sbjct: 139 RIADKA--------FYQQPDADI 153
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 4.7
Identities = 32/183 (17%), Positives = 52/183 (28%), Gaps = 85/183 (46%)
Query: 7 LANGAR-----------------IRYVKKKTAFDTEIASKLPESYRKFYAEWKMEKPKPV 49
L NGA+ +R K + D S++P S R K K
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ---SRIPFSER---------KLKFS 417
Query: 50 HYVEEPGRYKKNAQGVVVPVINYPIPSKYTLEQDLGIWGGESVIEGYRRPAHKYETQPPE 109
+ R+ +P + P S L PA
Sbjct: 418 N------RF--------LP-VASPFHSHL-LV-----------------PA--------- 435
Query: 110 YWVPHLLDHIVYSEIL--DKYLNVPVTQRTVDLIHEHYGFDEYLLQTRACNLNSLIACKI 167
+ +V + + K + +PV T D G D L+ + +++ I I
Sbjct: 436 --SDLINKDLVKNNVSFNAKDIQIPVYD-TFD------GSD---LRVLSGSISERIVDCI 483
Query: 168 KRK 170
R
Sbjct: 484 IRL 486
>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET:
FLC; 2.01A {Arabidopsis thaliana}
Length = 356
Score = 27.2 bits (61), Expect = 6.5
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 92 VIEGYRRPAHKYETQPPEYWVPHLLDHIVYS 122
V Y PA ++ P L H+ +
Sbjct: 5 VKASYWFPASEF---PVTDIDSSLFTHLFCA 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.404
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,495,172
Number of extensions: 273684
Number of successful extensions: 647
Number of sequences better than 10.0: 1
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 25
Length of query: 279
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 187
Effective length of database: 4,133,061
Effective search space: 772882407
Effective search space used: 772882407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.7 bits)