RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3482
         (279 letters)



>d2qamz1 d.325.1.1 (Z:2-78) Ribosomal protein L28 (L28p)
           {Escherichia coli [TaxId: 562]}
          Length = 77

 Score = 33.8 bits (78), Expect = 0.003
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 111 WVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHYGFDEYLLQTRA 156
           ++P+L  H  + E   +++ + V+ + + +I +  G D  L + RA
Sbjct: 28  FLPNLHSHRFWVESEKRFVTLRVSAKGMRVI-DKKGIDTVLAELRA 72


>d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus
           (Bacillus anthracis) [TaxId: 1392]}
          Length = 722

 Score = 31.0 bits (70), Expect = 0.17
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 6/62 (9%)

Query: 160 NSLIACKIKRKMLLALYDKTLYPDDETKRETIYNKYKHYLENYSREDIEWYGWSLPEAQE 219
             L   K+  KM + + DK  + D            +  ++   RE I     S      
Sbjct: 563 TVLDKIKLNAKMNILIRDKRFHYDRNNIA---VGADESVVKEAHREVI---NSSTEGLLL 616

Query: 220 KI 221
            I
Sbjct: 617 NI 618


>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
           NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
          Length = 561

 Score = 27.2 bits (60), Expect = 2.5
 Identities = 9/67 (13%), Positives = 23/67 (34%)

Query: 165 CKIKRKMLLALYDKTLYPDDETKRETIYNKYKHYLENYSREDIEWYGWSLPEAQEKIILI 224
             +K  +   LY +  +       + I   +K+   + S   I  +  ++   ++    I
Sbjct: 335 KGVKATVAPILYQEGAFGVRLKPDDDIIELFKNGRSSVSLGYIGIHELNILVGRDIGREI 394

Query: 225 EREAEAR 231
             +  A 
Sbjct: 395 LTKMNAH 401


>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate
           synthase {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 410

 Score = 26.3 bits (58), Expect = 5.1
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 11/95 (11%)

Query: 185 ETKRETIYNKYKHYLENYSREDIEWYGW-----SLPEAQEKIILIERE------AEARSK 233
           + +   +Y  +   L   S  D    GW      L EA ++  ++E +      A+    
Sbjct: 112 DAEGNDVYAPFNSLLPMVSPNDFVVSGWDINNADLYEAMQRSQVLEYDLQQRLKAKMSLV 171

Query: 234 VPLKVLFRKEMIEDLKQKKLEGTLNLEEEKTKPTS 268
            PL  ++  + I   + ++    +NL+E+    T 
Sbjct: 172 KPLPSIYYPDFIAANQDERANNCINLDEKGNVTTR 206


>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal
           domain {Clostridium symbiosum [TaxId: 1512]}
          Length = 375

 Score = 26.1 bits (56), Expect = 5.6
 Identities = 14/97 (14%), Positives = 24/97 (24%), Gaps = 21/97 (21%)

Query: 86  IWGGESVIEGYRRPAHKYETQPPEYWVPHLLDHIVYSEILDKYLNVPVTQRTVDLIHEHY 145
              GE +I             P             Y + +               + +H+
Sbjct: 266 GIYGEYLINAQGEDVVAGVRTPQPITQLENDMPDCYKQFM----------DLAMKLEKHF 315

Query: 146 G--------FDE---YLLQTRACNLNSLIACKIKRKM 171
                     +E   Y LQTR     +  A +I   +
Sbjct: 316 RDMQDMEFTIEEGKLYFLQTRNGKRTAPAALQIACDL 352


>d1wb0a1 c.1.8.5 (A:22-266,A:337-388) Chitotriosidase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 297

 Score = 25.5 bits (55), Expect = 7.1
 Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 3/27 (11%)

Query: 96  YRRPAHKYETQPPEYWVPHLLDHIVYS 122
           YR+   ++    P+   P L  H++Y+
Sbjct: 13  YRQGEARF---LPKDLDPSLCTHLIYA 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,123,239
Number of extensions: 56278
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 16
Length of query: 279
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,254,276
Effective search space: 244583820
Effective search space used: 244583820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)