RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3483
         (99 letters)



>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain. 
          Length = 26

 Score = 28.5 bits (64), Expect = 0.089
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 59 MRSHIRTHTKDRPYKCFYCDYR 80
          +R H+RTHT ++PYKC  C   
Sbjct: 2  LRRHMRTHTGEKPYKCPVCGKS 23


>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies).  This
          family contains two copies of a C2H2-like zinc finger
          domain.
          Length = 100

 Score = 26.1 bits (58), Expect = 2.0
 Identities = 6/23 (26%), Positives = 11/23 (47%)

Query: 74 CFYCDYRSNERSNVKAHMIRRHS 96
          C +C++ S+       HM + H 
Sbjct: 2  CLFCNHTSDTVEENLEHMFKSHG 24


>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
          Length = 511

 Score = 26.6 bits (59), Expect = 2.3
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 7/48 (14%)

Query: 59 MRSHIRTHTK-DRPYKCFY-----CDYRS-NERSNVKAHMIRRHSVKP 99
          M   I   T  D+P            YR  +ERSN  AH+ R   +K 
Sbjct: 1  MYPGIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKR 48


>gnl|CDD|222900 PHA02596, 5, baseplate hub subunit and tail lysozyme; Provisional.
          Length = 576

 Score = 26.3 bits (58), Expect = 2.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 48  CSKYRHSDASKMRSHIRTHTKDRP 71
            SK    D +K++  I  H+K  P
Sbjct: 238 ASKLFARDLAKVQRDISRHSKVGP 261


>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
           transition [Transcription / Cell division and chromosome
           partitioning].
          Length = 423

 Score = 25.4 bits (55), Expect = 5.4
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 68  KDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
           KD+PY+C  CD R    + +K H  R+HS
Sbjct: 395 KDKPYRCEVCDKRYKNLNGLKYH--RKHS 421


>gnl|CDD|114868 pfam06175, MiaE, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE).  This
           family consists of several bacterial
           tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) proteins. The
           modified nucleoside 2-methylthio-N-6-isopentenyl
           adenosine (ms2i6A) is present at position 37 (3' of the
           anticodon) of tRNAs that read codons beginning with U
           except tRNA(I,V Ser) in Escherichia coli. Salmonella
           typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is
           found in tRNA, probably in the corresponding species
           that have ms2i6A in E. coli. The miaE gene is absent in
           E. coli, a finding consistent with the absence of the
           hydroxylated derivative of ms2i6A in this species.
          Length = 199

 Score = 25.1 bits (55), Expect = 5.8
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 56  ASKMRSHIRTHTK----DRPYKCFYCDYRSNER 84
           A  + + +RTH      D+     Y + RS ER
Sbjct: 98  AKGLLAAVRTHEPQRLLDKLIVGAYIEARSCER 130


>gnl|CDD|218289 pfam04845, PurA, PurA ssDNA and RNA-binding protein.  This family
           represents most of the length of the protein.
          Length = 218

 Score = 25.1 bits (55), Expect = 7.1
 Identities = 9/46 (19%), Positives = 19/46 (41%)

Query: 39  KYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNER 84
           K+  +   L  +         RS +++    R  + +Y D + N+R
Sbjct: 59  KFIEHYAQLGPQNGEHLPEDGRSALKSEFLVRDNRKYYLDLKENQR 104


>gnl|CDD|214532 smart00136, LamNT, Laminin N-terminal domain (domain VI).
          N-terminal domain of laminins and laminin-related
          protein such as Unc-6/ netrins.
          Length = 238

 Score = 25.0 bits (55), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 73 KCFYCDYRSNERSNVKAHMI 92
          KC YCD R+  RS+   ++ 
Sbjct: 46 KCDYCDARNPRRSHPAENLT 65


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.132    0.432 

Gapped
Lambda     K      H
   0.267   0.0722    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,283,781
Number of extensions: 300484
Number of successful extensions: 446
Number of sequences better than 10.0: 1
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 39
Length of query: 99
Length of database: 10,937,602
Length adjustment: 65
Effective length of query: 34
Effective length of database: 8,054,592
Effective search space: 273856128
Effective search space used: 273856128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.2 bits)