RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3483
(99 letters)
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 46.3 bits (111), Expect = 1e-08
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
C CS S + +R H R H DRP+KC YC + + + SN+ HM ++
Sbjct: 10 EKCSECSY-SCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM-KKF 60
Score = 35.9 bits (84), Expect = 1e-04
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 64 RTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
+ + P KC C Y + ++ ++ H R H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHE-RIH 32
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 43.3 bits (103), Expect = 3e-07
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHT--KDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
Y C +C R + + M+ HI + C +CD +S++ H+ ++HS
Sbjct: 16 YECYICHA-RFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
Score = 39.4 bits (93), Expect = 9e-06
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 58 KMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
S RTH+ ++PY+C+ C R + +K H+ +
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHI-LQK 38
Score = 24.0 bits (53), Expect = 5.0
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRT-HTKDRPY 72
+ C C + S + H+R H+ P
Sbjct: 46 FHCPHCDT-VIARKSDLGVHLRKQHSYSGPS 75
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 40.5 bits (95), Expect = 4e-06
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTK---DRPYKCFYCDYRSNERSNVKAHMIRRHSVKP 99
C +C + + H R H + + C +C R + +V AH + H
Sbjct: 8 LQCEICGF-TCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Score = 29.7 bits (67), Expect = 0.041
Identities = 5/31 (16%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 66 HTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
+ +C C + +++++ H R+H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQ-RKHA 31
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 39.3 bits (91), Expect = 7e-06
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 42 RYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
+Y+C C R S ++ HIRTHT RPY C YC++ + N+ HM
Sbjct: 1 KYICEECGI-RXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 38.6 bits (91), Expect = 2e-05
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP 99
+ C +C + S + + +HIRTHT ++P+ C C + K H + P
Sbjct: 4 FQCRICMR-NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR-DIQHILP 58
Score = 31.7 bits (73), Expect = 0.008
Identities = 4/55 (7%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM--IRRH 95
+ C +C + + + + + + H P + ++ +++ + +++
Sbjct: 32 FACDICGR-KFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVARLKKL 84
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 36.7 bits (86), Expect = 1e-04
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
+ C +C + S + + +HIRTHT ++P+ C C + K H
Sbjct: 35 FQCRICMR-NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82
Score = 34.7 bits (81), Expect = 6e-04
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 43 YVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
Y C + C + R S + + HIR HT +P++C C + ++ H+
Sbjct: 5 YACPVESCDR-RFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 35.9 bits (84), Expect = 1e-04
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
+VC +C++ + ++ H R+HT ++PY C C+ R + H + HS
Sbjct: 3 FVCEVCTR-AFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 36.4 bits (85), Expect = 1e-04
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRT--HTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
Y C +CS+ ++ S H T + Y C +C + N+ AH+ +
Sbjct: 11 YRCKVCSR-VYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV-KII 63
Score = 31.8 bits (73), Expect = 0.006
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 64 RTHTKDRPYKCFYCDYRSNERSNVKAHM 91
T + Y+C C SN H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHY 30
Score = 24.1 bits (53), Expect = 5.0
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTK 68
Y C C K + M +H++ K
Sbjct: 41 YPCPFCFK-EFTRKDNMTAHVKIIHK 65
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 36.6 bits (86), Expect = 1e-04
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
Y C C +D+S + H+R H+ +RP+KC C Y S S + H+ R H
Sbjct: 37 YKCKTCDY-AAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL-RSH 87
Score = 27.8 bits (63), Expect = 0.25
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 65 THTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
+ P+KC C + + +K HM R H+
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHM-RCHT 32
Score = 27.8 bits (63), Expect = 0.32
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKC 74
+ C +C R+S S++ H+R+HT D
Sbjct: 65 FKCQICPYASRNS--SQLTVHLRSHTGDSGPSS 95
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 36.3 bits (85), Expect = 2e-04
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
+ C +C + ++R H+ +HT + PYKC C + ++ ++++HMI+ HS
Sbjct: 67 FTCSVCQET-FRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 30.9 bits (71), Expect = 0.026
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
C C K ++ H R HT ++P++C C + N+ H
Sbjct: 8 VECPTCHKK-FLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE 55
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 35.7 bits (83), Expect = 4e-04
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 43 YVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
Y C C R + + ++ H R HT +P++C C+ + ++ HM +RH
Sbjct: 46 YKCTWEGCDW-RFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM-KRH 98
Score = 31.1 bits (71), Expect = 0.019
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 48 CSKYRHSDASKMRSHIRTHTKDRPYKCFY--CDYRSNERSNVKAHMIRRHS 96
C+K ++ +S +++H+RTHT ++PYKC + CD+R + H R+H+
Sbjct: 23 CTK-VYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY-RKHT 71
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 35.3 bits (82), Expect = 4e-04
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 54 SDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
S S+++ H + H K C + + H+ H
Sbjct: 44 SLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 28.7 bits (65), Expect = 0.11
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 57 SKMRSHIRTHTKDRPYKCFY--CDYRSNERSNVKAHMIRRHS 96
++++ H +HT+ PY+C + CD R + S +K H + H+
Sbjct: 17 NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE-KVHA 57
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 35.6 bits (83), Expect = 4e-04
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 43 YVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
Y C C + R S + +++ H R HT +P++C C + + ++K H R H
Sbjct: 37 YQCDFKDCER-RFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT-RTH 89
Score = 34.8 bits (81), Expect = 0.001
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY--CDYRSNERSNVKAHMIRRH 95
+ C C + + S + +++H RTHT ++P+ C + C + + H H
Sbjct: 67 FQCKTCQR-KFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH-NMH 119
Score = 34.0 bits (79), Expect = 0.002
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 43 YVC--CLCSKYRHSDASKMRSHIRTHTKDRPYKCFY--CDYRSNERSNVKAHMIRRH 95
++C C+K R+ S ++ H R HT ++PY+C + C+ R + +K H RRH
Sbjct: 7 FMCAYPGCNK-RYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ-RRH 61
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 34.0 bits (79), Expect = 5e-04
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
+ ++PY C C R +K+H+ R H
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHL-RIH 34
Score = 30.9 bits (71), Expect = 0.006
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPY 72
Y C +C R ++SH+R HT P
Sbjct: 12 YPCEICGT-RFRHLQTLKSHLRIHTGSGPS 40
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 35.6 bits (83), Expect = 5e-04
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 48 CSKYRHSDASKMRSHIRTHTKDRPYKC--FYCDYRSNERSNVKAHMIRRHS 96
C K +S +++H+R+HT ++PY C C + S+ H R HS
Sbjct: 75 CRK-SYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Score = 35.6 bits (83), Expect = 7e-04
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 43 YVCCLCSKYRH----SDASKMRSHIRTHTKDRPYKCFY--CDYRSNERSNVKAHM 91
+VC R + H+R HT ++P+KC + C + N+K H+
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHL 89
Score = 31.8 bits (73), Expect = 0.014
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 10/62 (16%)
Query: 43 YVCCLCSKYRHSDASKMRSHI---RTHTKDRPYKCFYCDYRS-----NERSNVKAHMIRR 94
CS+ ++ HI H + + + C + + + HM RR
Sbjct: 4 CRWDGCSQ-EFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-RR 61
Query: 95 HS 96
H+
Sbjct: 62 HT 63
Score = 30.3 bits (69), Expect = 0.063
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 43 YVC--CLCSKYRHSDASKMRSHI-RTHTKDRPYKCFY--CDYRSNERSNVKAHM 91
Y+C CSK S+AS H RTH+ ++PY C C R + S+++ H+
Sbjct: 98 YMCEHEGCSK-AFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 33.3 bits (77), Expect = 8e-04
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
+ ++PYKC C R + ++++AH+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31
Score = 27.5 bits (62), Expect = 0.13
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPY 72
Y C C R + +R+H+ HT P
Sbjct: 12 YKCETCGA-RFVQVAHLRAHVLIHTGSGPS 40
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 34.2 bits (79), Expect = 8e-04
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 43 YVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
Y C + C + R S + ++ HIR HT +P++C C + ++ H+ R H+
Sbjct: 20 YACPVESCDR-RFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHT 73
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 32.9 bits (76), Expect = 0.003
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 43 YVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
Y C C + + + ++ H R HT RP++C CD + ++ HM +RH
Sbjct: 36 YHCDWDGCGW-KFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM-KRH 88
Score = 30.2 bits (69), Expect = 0.035
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 38 TKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC--FYCDYRSNERSNVKAHMIRRH 95
T C K ++ +S +++H+RTHT ++PY C C ++ + H R+H
Sbjct: 3 TATHTCDYAGCGK-TYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY-RKH 60
Query: 96 S 96
+
Sbjct: 61 T 61
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 33.3 bits (77), Expect = 0.003
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 43 YVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCFY--CDYRSNERSNVKAHM 91
+ C C K R S +R+H+R HT DRPY C + C+ + + +N+K+H+
Sbjct: 63 FQCTFEGCGK-RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 29.4 bits (67), Expect = 0.095
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 54 SDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
D S MR H+ TH R + C C E S +K H
Sbjct: 18 RDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQ 54
Score = 27.9 bits (63), Expect = 0.29
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 43 YVCCL--CSKYRHSDASKMRSHIRTHTKDRPYK 73
YVC C+K + + ++ ++SHI TH K + +
Sbjct: 93 YVCPFDGCNK-KFAQSTNLKSHILTHAKAKNNQ 124
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 32.6 bits (75), Expect = 0.007
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 57 SKMRSHIRTHTKDRPYKCFY--CDYRSNERSNVKAHM 91
K+ +HIR HT ++P+ C + C N+K H
Sbjct: 76 YKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK 112
Score = 31.5 bits (72), Expect = 0.021
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 54 SDASKMRSHIRTHTKDRPYKCFY--CDYRSNERSNVKAHMIRRHS 96
+ + ++ H RTHT ++P+KC + CD R S+ K HM H+
Sbjct: 103 ARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM-HVHT 146
Score = 31.1 bits (71), Expect = 0.030
Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 11/68 (16%)
Query: 38 TKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRS---------NERSNVK 88
C + S ++ +H+ P + + Y + +
Sbjct: 21 EAQLSRPKKSCDR-TFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 89 AHMIRRHS 96
H+ R H+
Sbjct: 80 NHI-RVHT 86
Score = 29.2 bits (66), Expect = 0.12
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 43 YVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C + R +++S + H+ HT D+
Sbjct: 121 FKCEFEGCDR-RFANSSDRKKHMHVHTSDKSGPS 153
Score = 29.2 bits (66), Expect = 0.13
Identities = 6/46 (13%), Positives = 10/46 (21%)
Query: 54 SDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP 99
+ S CD + + H+ H P
Sbjct: 8 QPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGP 53
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 31.7 bits (73), Expect = 0.009
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 60 RSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
S RTHT ++PY C +CD ++ + H +R+
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHF-KRY 38
Score = 29.0 bits (66), Expect = 0.070
Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 1/35 (2%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC 77
+VC C K + + M H +
Sbjct: 48 FVCSKCGK-TFTRRNTMARHADNCAGPDGVEGENS 81
Score = 25.9 bits (58), Expect = 1.2
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 7/54 (12%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHT----KDRPYKCFYCDYRSNERSNVKAHM 91
Y C C K +R + H + + + C C R+ + H
Sbjct: 16 YACSHCDKTFRQK--QLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 30.6 bits (70), Expect = 0.009
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + ++ +KC CD ++ S+++ H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 28.7 bits (65), Expect = 0.064
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C S AS +R H H ++P
Sbjct: 13 WKCRECDM-CFSQASSLRLHQNVHVGEKPSGP 43
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 31.9 bits (72), Expect = 0.010
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 37 PTKYQRYVCC--LCSKYR--HSDASKMRSHIRTHTKDRPYKC 74
+ +VC C + K+ +HIR HT ++
Sbjct: 52 GPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 26.1 bits (57), Expect = 1.1
Identities = 8/68 (11%), Positives = 18/68 (26%), Gaps = 11/68 (16%)
Query: 38 TKYQRYVCCLCSKYRHSDASKMRSHI-RTHTKDRPYKCFYCDYR--------SNERSNVK 88
C + S ++ +H+ H C + + +
Sbjct: 21 EAQLSRPKKSCDR-TFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 89 AHMIRRHS 96
H+ R H+
Sbjct: 80 NHI-RVHT 86
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 31.3 bits (72), Expect = 0.011
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
Y C C + SH HT ++PY+C C + N +N+K H
Sbjct: 18 YKCDRCQAS-FRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Score = 30.5 bits (70), Expect = 0.018
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 57 SKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
H D+PYKC C + N+ +H
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHK 37
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 31.7 bits (71), Expect = 0.012
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 25 MNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTH----TKDRPYKCFYCDYR 80
M H Y C C+ ++ D + H+ + + Y C C++
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCT-FQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFL 59
Query: 81 SNERSNVKAHMIRRHS 96
+ + H ++ H
Sbjct: 60 TKRYDALSEHNLKYHP 75
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.013
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PY+C C +RSN+ H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 27.9 bits (63), Expect = 0.12
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K +D S + +H + HT ++P
Sbjct: 13 YRCAECGK-AFTDRSNLFTHQKIHTGEKPSGP 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.015
Identities = 7/75 (9%), Positives = 23/75 (30%), Gaps = 1/75 (1%)
Query: 8 VTCMYCSKILTYETETIMNHC-KFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTH 66
+ + ++ + ++N K+ +P + + + + + ++ H
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 67 TKDRPYKCFYCDYRS 81
K F D
Sbjct: 451 DHYNIPKTFDSDDLI 465
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 31.3 bits (72), Expect = 0.015
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
C +C K D + H +H+ ++PY C C R + + H+
Sbjct: 8 VACEICGK-IFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV 55
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 31.4 bits (70), Expect = 0.016
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 39 KYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVK 98
C C ++ H+ ++ + C +C + + +K H++ H+
Sbjct: 31 DKGSVSCPTCQAVGRKTIEGLKKHMENCKQE-MFTCHHCGKQLRSLAGMKYHVMANHNSL 89
Query: 99 P 99
P
Sbjct: 90 P 90
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 30.6 bits (70), Expect = 0.016
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 43 YVC--CLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC 77
+ C C K + ++ H++ H+ R Y C +
Sbjct: 39 FSCPEPACGK-SFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 27.9 bits (63), Expect = 0.17
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 54 SDASKMRSHIR-THTKDRPYKC--FYCDYRSNERSNVKAHMIRRHS 96
S+ + H + H + + C C N + ++K HM + HS
Sbjct: 20 SNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM-KLHS 64
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.017
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + + ++PYKC C N R N+ H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 25.5 bits (57), Expect = 0.92
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K ++ + H R H ++
Sbjct: 13 YKCEDCGKG-YNRRLNLDMHQRVHMGEKTSGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.017
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF 75
+ C C S + + H+R+H + P
Sbjct: 13 FQCKECGM-NFSWSCSLFKHLRSHERTDPSGPS 44
Score = 29.9 bits (68), Expect = 0.023
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
S + T ++P++C C + ++ H+ R H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHL-RSHE 36
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (68), Expect = 0.018
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + PYKC C+ + + + H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 27.1 bits (61), Expect = 0.19
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K S ++ H R HT+++P
Sbjct: 13 YKCSQCEK-SFSGKLRLLVHQRMHTREKPSGP 43
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 30.0 bits (68), Expect = 0.018
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 61 SHIRTHTKDRPYKCFY--CDYRSNERSNVKAHMIRRHS 96
S + T ++P+ C + C +R + + H R HS
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHR-RSHS 38
Score = 25.7 bits (57), Expect = 0.67
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 48 CSKYRHSDASKMRSHIRTHTKDRPYKC 74
C R S + ++ H R+H+ +P
Sbjct: 20 CGW-RFSRSDELSRHRRSHSGVKPSGP 45
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 30.9 bits (71), Expect = 0.018
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
+ C +C K ++ S S + +H+ H+ RPY C YC R +++S++K H
Sbjct: 2 FDCKICGKSFKRS--STLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT 49
Score = 28.5 bits (65), Expect = 0.10
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
Y C C K R S M+ H HT ++P+KC C ++ SN+ H R+H
Sbjct: 30 YPCQYCGK-RFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHS-RKH 80
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.020
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + + ++PYKC C R ++ H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 25.6 bits (57), Expect = 0.72
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K + + H R HT ++
Sbjct: 13 YKCVECGK-GYKRRLDLDFHQRVHTGEKLSGP 43
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.5 bits (65), Expect = 0.026
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 70 RPYKCFYCDYRSNERSNVKAHMIRRHSVK 98
+P+KC C+Y + +SN+KAHM R + K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 29.2 bits (66), Expect = 0.028
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSV 97
R T +P++C CD + ++ H +RH +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR-KRHML 36
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.4 bits (67), Expect = 0.029
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + +R ++C C + SN H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 24.4 bits (54), Expect = 2.5
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K AS H R HT ++P
Sbjct: 13 HRCSDCGK-FFLQASNFIQHRRIHTGEKPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.031
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PYKC C +S ++ H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 26.7 bits (60), Expect = 0.26
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K + S++R H + HT +R
Sbjct: 13 YKCSDCGKS-FTWKSRLRIHQKCHTGERHSGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.034
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PYKC C N + N+ H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 25.6 bits (57), Expect = 0.89
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K ++ + H + HT +RP
Sbjct: 13 YKCEKCGKG-YNSKFNLDMHQKVHTGERPSGP 43
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 29.1 bits (65), Expect = 0.043
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 42 RYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC 77
+ C +C K D + H +H+ ++PY
Sbjct: 12 QVACEICGK-IFRDVYHLNRHKLSHSGEKPYSSGPS 46
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.043
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PYKC C SN+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 24.4 bits (54), Expect = 2.5
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K +R S + +H HT ++P
Sbjct: 13 YKCNECGKAFRAH--SNLTTHQVIHTGEKPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.047
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++P+KC C RS + H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 26.3 bits (59), Expect = 0.51
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKC 74
+ C +C K + S++ H HT ++P
Sbjct: 13 FKCDICGKSFCGR--SRLNRHSMVHTAEKPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 28.6 bits (65), Expect = 0.057
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++P+KC C + RS + H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 26.7 bits (60), Expect = 0.32
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K S S + H + HT ++P
Sbjct: 13 FKCVECGK-GFSRRSALNVHHKLHTGEKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.059
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + + ++P+KC C R + S + +H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 26.7 bits (60), Expect = 0.35
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K R + S++ SH R HT ++P
Sbjct: 13 FKCEECGK-RFTQNSQLHSHQRVHTGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.059
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PYKC C S + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 26.3 bits (59), Expect = 0.38
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K +RH+ S + H R HT ++P
Sbjct: 13 YKCNECGKVFRHN--SYLSRHQRIHTGEKPSGP 43
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 29.3 bits (66), Expect = 0.061
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 35 SRPTKYQRYVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCFY--CDYRSNERSNVKAH 90
++ + ++C C K + +S +++H RTHT ++P+ C + C+ R + H
Sbjct: 10 IDSSRIRSHICSHPGCGK-TYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Query: 91 MIRRH 95
R H
Sbjct: 69 R-RTH 72
Score = 28.5 bits (64), Expect = 0.13
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 56 ASKMRSHIRTHTKDRPYKCFY--CDYRSNERSNVKAHMIRRHS 96
+S ++ R + C + C + S++KAH R H+
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHT-RTHT 43
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 30.3 bits (69), Expect = 0.061
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 54 SDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
S S+++ H + H K C + + H+ H
Sbjct: 147 SLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 29.1 bits (66), Expect = 0.17
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 43 YVC--CLCSKYRHSDASKMRSHIRTHTKDRPYKC--FYCDYRSNERSNVKAHMIRRH 95
+ C C K + + H THT ++ + C CD R ++N+K H R
Sbjct: 43 FPCKEEGCEK-GFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF-NRF 97
Score = 27.9 bits (63), Expect = 0.36
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 39 KYQRYVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKC--FYCDYRSNERSNVKAHM 91
K YVC C K ++++ H +HT+ PY+C CD R + S +K H
Sbjct: 101 KICVYVCHFENCGK-AFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 156
Score = 27.9 bits (63), Expect = 0.42
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 43 YVC--CLCSKYRHSDASKMRSHIRTHT--KDRPYKCFY--CDYRSNERSNVKAHM 91
+ C C R + + M+ H K Y C + C + + +K H
Sbjct: 73 FTCDSDGCDL-RFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ 126
Score = 27.9 bits (63), Expect = 0.43
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 54 SDASKMRSHIRTHTKDRPYKC--FYCDYRSNERSNVKAHM 91
+ K+++H+ HT ++P+ C C+ ++ H
Sbjct: 25 NKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS 64
Score = 24.9 bits (55), Expect = 4.2
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 62 HIRTHTKDRPYKCFY--CDYRSNERSNVKAHM 91
+ Y C + C N+ ++AH+
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHL 34
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.068
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T +RPY C C +RSN+ H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 28.2 bits (64), Expect = 0.077
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y+C +C K +D S + H + HT ++P
Sbjct: 13 YICTVCGK-AFTDRSNLIKHQKIHTGEKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.069
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K S S + H+RTH+ ++P
Sbjct: 13 YGCSECGK-AFSSKSYLIIHMRTHSGEKPSGP 43
Score = 26.0 bits (58), Expect = 0.65
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + ++PY C C + +S + H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.071
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PYKC C S++ H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 25.9 bits (58), Expect = 0.57
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKC 74
Y C +C K +R+ S + H R HT ++P
Sbjct: 13 YKCDVCHKSFRYG--SSLTVHQRIHTGEKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.072
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PYKC C R ++ H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 26.0 bits (58), Expect = 0.52
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K + +H HT ++P
Sbjct: 13 YKCEECGK-GFICRRDLYTHHMVHTGEKPSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.083
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T +PY C C + S++ H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
Score = 24.8 bits (55), Expect = 1.5
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y+C C K S S + +H HT ++P
Sbjct: 13 YMCNECGK-AFSVYSSLTTHQVIHTGEKPSGP 43
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 29.7 bits (66), Expect = 0.084
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 54 SDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
S S + + T ++C C + + HM
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHM 39
Score = 28.6 bits (63), Expect = 0.21
Identities = 7/50 (14%), Positives = 15/50 (30%)
Query: 46 CLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
++ + + KC YC + ++ HMI+
Sbjct: 55 NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.3 bits (62), Expect = 0.084
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 67 TKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
+ +PYKC C Y S ++N+ H+ R+H+
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHL-RKHT 33
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.090
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T + P+ C C ++N+ H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 27.1 bits (61), Expect = 0.19
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
++C C K + + + H + HT +RP
Sbjct: 13 FICSECGK-VFTHKTNLIIHQKIHTGERPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 28.3 bits (64), Expect = 0.090
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T +P++C +C + N+ H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 26.0 bits (58), Expect = 0.64
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K + +H R HT ++
Sbjct: 13 FECTHCGKS-FRAKGNLVTHQRIHTGEKSGPS 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.092
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PYKC C +S + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 27.9 bits (63), Expect = 0.13
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K + S + H ++HT +R
Sbjct: 13 YKCSDCGK-AFTRKSGLHIHQQSHTGERHSGP 43
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (63), Expect = 0.092
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + + ++ + C C S ++ H
Sbjct: 2 SSGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 23.7 bits (52), Expect = 4.0
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K + + S +R H R H ++
Sbjct: 13 HTCDECGKNFCYI--SALRIHQRVHMGEKCSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.094
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + ++ YKC C ++ S+++ H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 26.0 bits (58), Expect = 0.59
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C +C K S +S +++H R HT ++P
Sbjct: 13 YKCDVCGK-EFSQSSHLQTHQRVHTGEKPSGP 43
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 29.7 bits (68), Expect = 0.095
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
Y C C K S + +H RTHT ++PYKC C + R + H
Sbjct: 134 YKCPECGK-SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 29.7 bits (68), Expect = 0.10
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
Y C C K SD + H RTHT ++PYKC C ++R+N++AH
Sbjct: 50 YKCPECGK-SFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH 96
Score = 29.3 bits (67), Expect = 0.12
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
Y C C K S + +R+H RTHT ++PY C C ++ ++++AH
Sbjct: 78 YKCPECGKS-FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Score = 28.2 bits (64), Expect = 0.31
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 57 SKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + ++PY C C + ++ H
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH 40
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.097
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K + S + H RTHT ++P
Sbjct: 13 FECSECQK-AFNTKSNLIVHQRTHTGEKPSGP 43
Score = 27.4 bits (62), Expect = 0.15
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++P++C C N +SN+ H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.099
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + + +RP+KC C RS++ H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 24.8 bits (55), Expect = 1.6
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K S + H+R H++++
Sbjct: 13 FKCNECGK-GFGRRSHLAGHLRLHSREKSSGP 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 28.3 bits (64), Expect = 0.099
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
S + + +PY C C + ++ H+ + H+
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT 37
Score = 27.5 bits (62), Expect = 0.17
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 43 YVCCLCSK-YRHSDASKMRSHI-RTHTKDRPYKCFYC 77
Y+C C K + + HI + HT +RP+KC
Sbjct: 13 YICQSCGKGFSRP--DHLNGHIKQVHTSERPHKCQVW 47
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 27.9 bits (63), Expect = 0.100
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C+K S S++ H R+HT +P
Sbjct: 13 YGCSQCAK-TFSLKSQLIVHQRSHTGVKPSGP 43
Score = 26.3 bits (59), Expect = 0.42
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T +PY C C + +S + H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 28.6 bits (65), Expect = 0.10
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
Y C C K S +S + H R HT ++PYKC C ++ S + H
Sbjct: 15 YGCVECGK-AFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.8 bits (63), Expect = 0.10
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PY+C C N +SN+ H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 27.4 bits (62), Expect = 0.18
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K + S + H RTHT +
Sbjct: 13 YECNECQK-AFNTKSNLMVHQRTHTGESGPSS 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (63), Expect = 0.11
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K S+ SH R+H+ ++P
Sbjct: 13 FKCEECGK-GFYTNSQCYSHQRSHSGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.13
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + + ++P+KC C S +H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 27.9 bits (63), Expect = 0.11
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
+ ++PY+C C +++ ++ H+ R H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHI-RVH 34
Score = 24.5 bits (54), Expect = 2.0
Identities = 11/30 (36%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPY 72
Y C C K S + HIR HT P
Sbjct: 12 YRCDQCGK-AFSQKGSLIVHIRVHTGSGPS 40
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.12
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PY+C C +++N+ H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 24.8 bits (55), Expect = 1.4
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K + + + H R HT ++P
Sbjct: 13 YRCGECGK-AFAQKANLTQHQRIHTGEKPSGP 43
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 28.9 bits (66), Expect = 0.12
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 28 CKFC-KAVSRP---TKYQR-------YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKCF 75
CKFC + ++ ++R Y C +C K +R +R H H+K++P+KC
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQ--DHLRDHRYIHSKEKPFKCQ 77
Query: 76 YCDYRSNERSNVKAHM 91
C + + H
Sbjct: 78 ECGKGFCQSRTLAVHK 93
Score = 27.0 bits (61), Expect = 0.58
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 57 SKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + + C +C + N+ H
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIH 36
Score = 25.1 bits (56), Expect = 2.7
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 3/33 (9%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K + S + H H +
Sbjct: 74 FKCQECGKGFCQS--RTLAVHKTLHMQTSSPTA 104
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.12
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
C C K S++ H RTH D+
Sbjct: 13 CKCTECGK-AFCWKSQLIMHQRTHVDDKHSGP 43
Score = 27.5 bits (62), Expect = 0.16
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++P KC C +S + H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.13
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PY C C RSN+ H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 27.1 bits (61), Expect = 0.22
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y+C C K + S + H + HTK +P
Sbjct: 13 YICAECGK-AFTIRSNLIKHQKIHTKQKPSGP 43
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 28.2 bits (64), Expect = 0.13
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
Y C C K S +S + H RTHT ++PYKC C +RS++ H
Sbjct: 19 YKCDECGK-SFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 28.2 bits (64), Expect = 0.14
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 57 SKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
+ R YKC C + S++ H
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH 37
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.13
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
S + + +RPY C C S++ H+ +RH
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHL-KRHF 36
Score = 25.9 bits (58), Expect = 0.69
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 43 YVCCLCSK--YRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K RHS + H++ H +++
Sbjct: 13 YGCNECGKNFGRHSHLIE---HLKRHFREKSSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.13
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PYKC C + S+ H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
Score = 27.2 bits (61), Expect = 0.24
Identities = 12/32 (37%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K D S H R HT RP
Sbjct: 13 YKCMECGK-AFGDNSSCTQHQRLHTGQRPSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.14
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PYKC C + S++ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 24.4 bits (54), Expect = 2.1
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K + S + +H R HT +P
Sbjct: 13 YKCNECGK-VFTQNSHLANHQRIHTGVKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.14
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + + +KC C + S++ H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 24.4 bits (54), Expect = 2.6
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K + +S + H R HT ++P
Sbjct: 13 FKCNECKK-TFTQSSSLTVHQRIHTGEKPSGP 43
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 27.5 bits (60), Expect = 0.14
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 70 RPYKCFYCDYRSNERSNVKAHMIRRHS 96
+ Y+C YC++RS + SN+K H+ +HS
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHS 27
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.14
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++P+KC C N+R ++ H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 24.4 bits (54), Expect = 2.4
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K ++ + H R HT ++P
Sbjct: 13 FKCGECGK-SYNQRVHLTQHQRVHTGEKPSGP 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.5 bits (62), Expect = 0.14
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K S S + H +TH +++P
Sbjct: 11 FGCSCCEK-AFSSKSYLLVHQQTHAEEKPSGP 41
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.5 bits (62), Expect = 0.15
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K S + H R+HT ++P
Sbjct: 13 YECIECGK-AFKTKSSLICHRRSHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.37
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T RPY+C C +S++ H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.17
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PY C C S ++ H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 26.7 bits (60), Expect = 0.29
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K + H S+++ H R HT ++P
Sbjct: 13 YNCEECGKAFIHD--SQLQEHQRIHTGEKPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.17
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + ++PY+C C + + H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
Score = 26.4 bits (59), Expect = 0.40
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K S + ++ H THT+++P
Sbjct: 13 YQCSECGK-SFSGSYRLTQHWITHTREKPSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 27.5 bits (62), Expect = 0.17
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K + ++ SH RTH +
Sbjct: 11 YECSECGK-AFNRKDQLISHQRTHAGESGPSS 41
Score = 23.2 bits (51), Expect = 5.2
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 64 RTHTKDRPYKCFYCDYRSNERSNVKAH 90
+ + PY+C C N + + +H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 28.6 bits (65), Expect = 0.18
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 46 CLCSK-YRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
C C K + H S+ H+ H RPY C C + + ++ HM + H+
Sbjct: 13 CQCGKSFTHK--SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM-KIHT 61
Score = 27.8 bits (63), Expect = 0.28
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC 77
Y C +C K + + H++ HT +PY+C C
Sbjct: 38 YGCGVCGK-KFKMKHHLVGHMKIHTGIKPYECNIC 71
Score = 23.9 bits (53), Expect = 8.5
Identities = 2/16 (12%), Positives = 5/16 (31%)
Query: 62 HIRTHTKDRPYKCFYC 77
H + + Y+
Sbjct: 82 HRHVTSCTKSYEAAKA 97
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.37.1.5
Length = 121
Score = 28.8 bits (64), Expect = 0.18
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 69 DRPYKCFYCDYRSNERSNVKAHMIRRH 95
+ C +CD +H H
Sbjct: 13 RQHTPCLFCDRLFASAEETFSHCKLEH 39
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.18
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + + ++P+KC C + ++ +H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 24.4 bits (54), Expect = 2.1
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K + SH+R HT ++P
Sbjct: 13 FKCKECGK-AFRQNIHLASHLRIHTGEKPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.4 bits (62), Expect = 0.18
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
YVC C K S + H RTHT +
Sbjct: 13 YVCNECGK-AFRSKSYLIIHTRTHTGESGPSS 43
Score = 25.5 bits (57), Expect = 0.74
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T +PY C C +S + H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.19
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C +C K + S++ H + HT ++P
Sbjct: 13 YECSICGK-SFTKKSQLHVHQQIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.31
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PY+C C ++S + H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.19
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++P+ C C ++ + H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 27.1 bits (61), Expect = 0.26
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K SD + H R HT ++P
Sbjct: 13 FDCIDCGK-AFSDHIGLNQHRRIHTGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.20
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PY C C ++S++ H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 25.9 bits (58), Expect = 0.62
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y+C C K S + H R HT ++P
Sbjct: 13 YICNECGK-SFIQKSHLNRHRRIHTGEKPSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.20
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + + ++PYKC C + S++ H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 24.0 bits (53), Expect = 3.2
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K + S + +H R HT ++P
Sbjct: 13 YKCNECGK-VFTQNSHLTNHWRIHTGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.21
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T +RP+KC C + +++ H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 24.8 bits (55), Expect = 1.8
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K ++ + H R HT ++P
Sbjct: 13 HKCNECGK-SFIQSAHLIQHQRIHTGEKPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (61), Expect = 0.22
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + + + ++C C +S++ H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.22
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K +R S + H TH+ ++P
Sbjct: 13 YKCNECGKAFRAR--SSLAIHQATHSGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.26
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PYKC C RS++ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 27.1 bits (61), Expect = 0.22
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
S + T +PY+C C + +++ H H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 22.9 bits (50), Expect = 8.9
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 43 YVCCLCSKYRHSDASKMRSHIR-THTKDRPYKC 74
Y C C K + + H R HT ++P
Sbjct: 13 YECIECGK-AFIQNTSLIRHWRYYHTGEKPSGP 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.22
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PY+C C ++S + H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 27.1 bits (61), Expect = 0.25
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K S++ H R HT + P
Sbjct: 13 YECSDCGK-SFIKKSQLHVHQRIHTGENPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 27.1 bits (61), Expect = 0.22
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PY C C S + H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 26.4 bits (59), Expect = 0.41
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K +R + S + H R H+ ++P
Sbjct: 13 YNCKECGKSFRWA--SCLLKHQRVHSGEKPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.23
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + + ++PY C C +++S + AH
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 27.1 bits (61), Expect = 0.25
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K S S + +H RTHT ++P
Sbjct: 13 YGCNECGK-TFSQKSILSAHQRTHTGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.24
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + + ++P++C C R + S++ +H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 26.4 bits (59), Expect = 0.46
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K R + S + SH R HT ++P
Sbjct: 13 FQCEECGK-RFTQNSHLHSHQRVHTGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.24
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PYKC C + S++ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 24.4 bits (54), Expect = 2.4
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K + S + H HT ++P
Sbjct: 13 YKCNECGK-VFTQNSHLARHRGIHTGEKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.24
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PYKC C + S++ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 24.7 bits (55), Expect = 1.5
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K + S + H HT ++P
Sbjct: 13 YKCNECGK-VFTQNSHLVRHRGIHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.25
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
YVC C K ++++ H R HT ++P
Sbjct: 13 YVCDYCGK-AFGLSAELVRHQRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.41
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + + ++PY C YC + + H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 27.1 bits (61), Expect = 0.26
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K S +S++ +H R HT ++P
Sbjct: 13 FECAECGK-SFSISSQLATHQRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.40
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++P++C C + S + H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH 31
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 27.1 bits (60), Expect = 0.26
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP 99
S + + P+KC CD +R+ + H R H+ K
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHE-RTHARKS 39
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 26.8 bits (60), Expect = 0.27
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T + Y C C ++ H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.28
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K S ++ SH RTH ++P
Sbjct: 13 YECHECGK-AFSRKYQLISHQRTHAGEKPSGP 43
Score = 25.5 bits (57), Expect = 0.95
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T + PY+C C + + + +H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.28
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 61 SHIRTHTKDRPYKCFYC 77
S + + +PY+C C
Sbjct: 2 SSGSSGSGKKPYECKEC 18
Score = 24.8 bits (55), Expect = 1.8
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K + H R HT +R
Sbjct: 13 YECKECRK-TFIQIGHLNQHKRVHTGERSSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.28
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PYKC C ++ S + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 25.2 bits (56), Expect = 1.2
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K S SK+ H R HT ++P
Sbjct: 13 YKCNECGK-AFSQTSKLARHQRIHTGEKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.28
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T +PY+C C ++ S + H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARH 31
Score = 25.2 bits (56), Expect = 1.1
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K S SK+ H R HT ++P
Sbjct: 13 YQCNECGK-AFSQTSKLARHQRVHTGEKPSGP 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 26.7 bits (60), Expect = 0.31
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 61 SHIRTHTKDRPYKCFYC 77
S + T + PY+C C
Sbjct: 2 SSGSSGTGENPYECCEC 18
Score = 25.5 bits (57), Expect = 0.74
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y CC C K S ++ SH +TH+
Sbjct: 13 YECCECGK-VFSRKDQLVSHQKTHSGQSGPSS 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.31
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K + S + H R HT ++P
Sbjct: 13 YECSECGK-AFARKSTLIMHQRIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.59
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 61 SHIRTHTKDRPYKCFYC 77
S + T +R Y+C C
Sbjct: 2 SSGSSGTGERHYECSEC 18
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.32
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PYKC C + S++ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 24.0 bits (53), Expect = 3.7
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K + S + H R HT +P
Sbjct: 13 YKCNECGK-VFTQNSHLARHRRVHTGGKPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.34
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKC 74
Y C +C K + H + + H R H+ ++P
Sbjct: 13 YECDVCRKAFSHH--ASLTQHQRVHSGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.44
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PY+C C + +++ H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQH 31
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.36
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T +PYKC C + S++ H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 23.6 bits (52), Expect = 4.7
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K + S + H HT ++P
Sbjct: 13 YKCNECGK-VFTQNSHLARHRGIHTGEKPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.37
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T + ++C C +S + H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 25.6 bits (57), Expect = 0.81
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K + S + H + HT ++P
Sbjct: 13 FECTECGKA-FTRKSTLSMHQKIHTGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.37
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T +R Y+C C ++S + H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 25.9 bits (58), Expect = 0.58
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K S + H R H ++P
Sbjct: 13 YECSECGK-AFIQKSTLSMHQRIHRGEKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.37
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PY+C C +++++ H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 26.0 bits (58), Expect = 0.60
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C +CSK + + + H +THT ++P
Sbjct: 13 YECKVCSK-AFTQKAHLAQHQKTHTGEKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.38
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PY+C C + RS++ H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 26.0 bits (58), Expect = 0.69
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K S S + +H HT +P
Sbjct: 13 YECNQCGK-AFSVRSSLTTHQAIHTGKKPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.38
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PYKC C S++ H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARH 31
Score = 24.0 bits (53), Expect = 3.9
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K +R + S + H HT ++P
Sbjct: 13 YKCHECGKVFRRN--SHLARHQLIHTGEKPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.38
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKC 74
Y C +C K + H + H R H+ +P
Sbjct: 13 YECSVCGKAFSHR--QSLSVHQRIHSGKKPSGP 43
Score = 26.3 bits (59), Expect = 0.43
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PY+C C + R ++ H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.40
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++ Y C C + + H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 26.3 bits (59), Expect = 0.45
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K S A + H R H+ ++P
Sbjct: 13 YNCKECGK-SFSRAPCLLKHERLHSGEKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.50
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PYKC C S++ H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
Score = 24.4 bits (54), Expect = 2.1
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKC 74
Y C +C K +R S S + H H+ +RP
Sbjct: 13 YKCQVCGKAFRVS--SHLVQHHSVHSGERPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.56
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + + ++PYKC C + +++ H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
Score = 24.0 bits (53), Expect = 3.2
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K + + + H R HT RP
Sbjct: 13 YKCSECGKAFHRH--THLNEHRRIHTGYRPSGP 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 26.1 bits (58), Expect = 0.56
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
+ + PY C C +R ++ H R S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQ-RSCS 35
Score = 23.8 bits (52), Expect = 4.3
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYK 73
Y+C C K + + H R+ ++ P
Sbjct: 12 YLCGQCGK-SFTQRGSLAVHQRSCSQSGPSS 41
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 27.2 bits (59), Expect = 0.62
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 42 RYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSV 97
++VC LC S + ++ HIR C C + H+ ++H++
Sbjct: 74 QFVCPLCLM-PFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKKHNI 126
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 0.69
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
+ C C K S S++ H R HT + P
Sbjct: 13 HECRECGK-SFSFNSQLIVHQRIHTGENPSGP 43
Score = 26.0 bits (58), Expect = 0.70
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 61 SHIRTHTKDRPYKCFYC 77
S + T ++P++C C
Sbjct: 2 SSGSSGTGEKPHECREC 18
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 25.6 bits (57), Expect = 0.75
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++ YKC C + S + H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
Score = 24.0 bits (53), Expect = 2.7
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K S S++ H + HT ++P
Sbjct: 13 YKCNECGK-VFSRNSQLSQHQKIHTGEKPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.76
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
S + T ++PY C C +++ H+
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHL 32
Score = 24.0 bits (53), Expect = 2.9
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 43 YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKC 74
Y C +C K + S + + H+R HT++
Sbjct: 13 YSCNVCGKAFVLS--AHLNQHLRVHTQETLSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 25.6 bits (57), Expect = 0.85
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 61 SHIRTHTKDRPYKCFYC 77
S + + ++PY+C C
Sbjct: 2 SSGSSGSGEKPYECNEC 18
Score = 24.8 bits (55), Expect = 1.7
Identities = 9/32 (28%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K S + H RTH
Sbjct: 13 YECNECGK-AFIWKSLLIVHERTHAGVSGPSS 43
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 25.2 bits (55), Expect = 1.1
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 37 PTKYQRYVCCL--CSKYRHSDASKMRSHIRTHTKDR 70
+ + C C+K +RSHI+TH +DR
Sbjct: 13 EMPDKTFECLFPGCTK-TFKRRYNIRSHIQTHLEDR 47
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 25.2 bits (56), Expect = 1.2
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAH 90
S + T ++PY+C C ++ +++ H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 24.8 bits (55), Expect = 1.5
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y C C K S + + H R HT ++P
Sbjct: 13 YECKECGK-AFSQTTHLIQHQRVHTGEKPSGP 43
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 26.3 bits (58), Expect = 1.9
Identities = 13/45 (28%), Positives = 17/45 (37%)
Query: 27 HCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRP 71
CK C+ + R T YQ Y C C H + H +D
Sbjct: 359 SCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVPPCGRHGQDFA 403
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 25.6 bits (57), Expect = 3.0
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 82 NERSNVKAHMIRRHSVKP 99
S+ A I ++
Sbjct: 36 KRDSDSIAAFIDSLALLA 53
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
AMP-forming domain, adenylation, D-alanine protein
ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus}
PDB: 3fcc_A* 3dhv_A*
Length = 512
Score = 25.2 bits (56), Expect = 5.0
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 82 NERSNVKAHMIRRHSVKP 99
E S+ AH I
Sbjct: 33 KEDSDALAHWISSEYPDD 50
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 24.8 bits (55), Expect = 5.4
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 82 NERSNVKAHMIRRHSVKP 99
N ++N A + +
Sbjct: 71 NVKANQLARIFIEKGIGK 88
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 23.1 bits (50), Expect = 6.0
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 64 RTHTKDRPYKCFYCDYRSNERSNVKAH 90
+ ++PY C C ++ + + H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQH 29
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease,
double strand DNA repair, protein-DNA CO hydrolase-DNA
complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Length = 1166
Score = 24.7 bits (53), Expect = 6.5
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 18/43 (41%)
Query: 57 SKMRSHIRTHTKD------------RPYK------CFYCDYRS 81
+ H+R ++ PYK C YC ++S
Sbjct: 1086 DLLTKHVRRTFQEAGEQITDGRVSIEPYKMKNKTPCTYCAFKS 1128
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 23.3 bits (49), Expect = 6.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 72 YKCFYCDYRSNERSNVKAHMIRRHSVK 98
+ C CD R +E +++K H ++ HS K
Sbjct: 11 FFCNECDCRFSEEASLKRHTLQTHSDK 37
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal
nuclease OB fold, tudor domain, cytoplasm, HOST-virus
interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Length = 570
Score = 24.8 bits (53), Expect = 7.2
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 3/79 (3%)
Query: 5 ELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIR 64
V + L E + N V +R C+ + D R+ +
Sbjct: 377 HFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIA---KFVDGEWYRARVE 433
Query: 65 THTKDRPYKCFYCDYRSNE 83
FY DY + E
Sbjct: 434 KVESPAKIHVFYIDYGNRE 452
>3a98_B Engulfment and cell motility protein 1; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Length = 203
Score = 24.2 bits (52), Expect = 7.5
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 2/77 (2%)
Query: 25 MNHCKFCKAVSRPTKYQRYVCCLCS--KYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSN 82
+ F K +R + + + C L K H + K D ++
Sbjct: 33 VEGTCFRKLNARRRQDKFWYCRLSPNHKVLHYGDLEESPQGEVPHDSLQDKLPVADIKAV 92
Query: 83 ERSNVKAHMIRRHSVKP 99
HM + ++K
Sbjct: 93 VTGKDCPHMKEKGALKQ 109
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.132 0.432
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,349,962
Number of extensions: 61955
Number of successful extensions: 612
Number of sequences better than 10.0: 1
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 362
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.0 bits)