RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3483
(99 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 38.0 bits (89), Expect = 5e-06
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 64 RTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
RTH+ ++PY+C+ C R + +K H++++H+
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT 33
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.3 bits (74), Expect = 8e-04
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 64 RTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
RTHT ++PY C +CD ++ + H +R+
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHF-KRYH 32
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 32.0 bits (73), Expect = 0.001
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
R T +P++C CD + ++ H +RH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR-KRH 34
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 32.1 bits (73), Expect = 0.001
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
+ R YKC C + S++ H R H+
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHR-RTHT 36
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 30.3 bits (69), Expect = 0.003
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 66 HTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
H+ ++PY C C + S + H R H+
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQ-RVHT 31
Score = 21.8 bits (47), Expect = 6.5
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHT 67
Y C C K S +S + H R HT
Sbjct: 8 YGCVECGK-AFSRSSILVQHQRVHT 31
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 29.0 bits (64), Expect = 0.014
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 70 RPYKCFYCDYRSNERSNVKAHMIRRHS 96
+ Y+C YC++RS + SN+K H+ +HS
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHS 27
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 28.4 bits (64), Expect = 0.021
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 67 TKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
+ +PY C C + ++ H+ + H+
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHT 30
Score = 26.1 bits (58), Expect = 0.16
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC 74
Y+C C K + HT +RP+KC
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.2 bits (58), Expect = 0.15
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 45 CCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY 76
C K + ++ H++ H+ R Y C +
Sbjct: 6 EPACGK-SFNFKKHLKEHMKLHSDTRDYICEF 36
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 25.7 bits (56), Expect = 0.21
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 70 RPYKCFYCDYRSNERSNVKAHMIRRH 95
RP+KC YC + + + SN+ HM + H
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFH 26
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 25.1 bits (55), Expect = 0.46
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 66 HTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
+ RP+ C C ++N H+ + H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHL-KVHT 31
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 24.6 bits (53), Expect = 0.53
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 69 DRPYKCFYCDYRSNERSNVKAHMIRRHS 96
+RP+KC C Y S S + H+ R H+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHL-RSHT 27
Score = 22.3 bits (47), Expect = 4.0
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKD 69
+ C +C Y ++S++ H+R+HT D
Sbjct: 4 FKCQICP-YASRNSSQLTVHLRSHTGD 29
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 24.1 bits (53), Expect = 0.71
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 70 RPYKCFYCDYRSNERSNVKAHM 91
R + C C + ++K H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 23.7 bits (52), Expect = 1.3
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 70 RPYKCFYCDYRSNERSNVKAHMIRRHS 96
+P++C C + ++ H+ R H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI-RTHT 27
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 23.5 bits (51), Expect = 1.5
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 70 RPYKCFYCDYRSNERSNVKAHM 91
+ + C C R ++ H+
Sbjct: 1 KKFACPECPKRFMRSDHLSKHI 22
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.8 bits (48), Expect = 2.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 70 RPYKCFYCDYRSNERSNVKAHM 91
+PYKC CDY + + S++ H+
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHL 23
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 90
Score = 23.3 bits (50), Expect = 4.0
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 21 TETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDY 79
E + N V +R C+ + D R+ + FY DY
Sbjct: 7 MENMRNDIASHPPVEGSYAPRRGEFCIA---KFVDGEWYRARVEKVESPAKIHVFYIDY 62
>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos
taurus) [TaxId: 9913]}
Length = 98
Score = 23.2 bits (50), Expect = 4.8
Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 10/40 (25%)
Query: 42 RYVCCLCSKYRHSDASKMRSHIRTHT--KDRPYKCFYCDY 79
R V C+C + + K +C C
Sbjct: 56 RIVGCICEEDNS--------TVIWFWLHKGEAQRCPSCGT 87
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 22.7 bits (48), Expect = 5.2
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 46 CLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
C C K + S+ H+ H RPY C C + + ++ HM
Sbjct: 6 CQCGK-SFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50
>d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 148
Score = 23.2 bits (50), Expect = 6.0
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 47 LCSKYRHSDASKMRSHIRTHTKDR 70
+Y +D ++RS IR +
Sbjct: 102 FVIEYPDADRQQLRSLIRQAQHEV 125
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 26
Score = 21.7 bits (45), Expect = 6.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 71 PYKCFYCDYRSNERSNVKAHMIRRH 95
PYKC C + ++ ++++HMI+ H
Sbjct: 2 PYKCSSCSQQFMQKKDLQSHMIKLH 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.132 0.432
Gapped
Lambda K H
0.267 0.0671 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 353,566
Number of extensions: 14346
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 75
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.0 bits)