RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3485
(304 letters)
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 54.4 bits (132), Expect = 3e-10
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 186 FMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
C C Y C +++ IH R H ++PF C C++ + HM+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 44.0 bits (105), Expect = 1e-06
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 206 RTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINR 265
+ + P C C+Y +SK A+ H R H +R + C +C+F + +++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHER-IH-----CTDRPFKCNYCSFDTKQPSNLSK 55
Query: 266 HTKYTH 271
H K
Sbjct: 56 HMK-KF 60
Score = 29.0 bits (66), Expect = 0.31
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 186 FMCFACPYYCRYGSSMAIHLRTHTKEKPFAC 216
F C C + + S+++ H++ +
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 52.0 bits (125), Expect = 3e-09
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 186 FMCFACPYYCRYGSSMAIHLRTHTK---EKPFACEMCNYRAASKIAIYAHMRTTH 237
C C + CR +S+ H R H + F CE C R ++ AH +H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 42.4 bits (100), Expect = 8e-06
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 12/78 (15%)
Query: 208 HTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCN--FTSPTQWAINR 265
+ CE+C + K ++ H R H +T R+ C FC F P A
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQR-KHA--ETVAALRFPCEFCGKRFEKPDSVA--- 55
Query: 266 HTKYTHMNTSGPTIQPEC 283
H + S P +
Sbjct: 56 ----AHRSKSHPALLLAP 69
Score = 26.6 bits (59), Expect = 3.2
Identities = 7/36 (19%), Positives = 9/36 (25%)
Query: 184 RNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMC 219
F C C S+A H A +
Sbjct: 37 LRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQES 72
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 47.9 bits (115), Expect = 8e-08
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 200 SMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERR-YHCAFCN--FT 256
S RTH+ EKP+ C +C+ R + H+ +E +HC C+
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QK----HTENVAKFHCPHCDTVIA 56
Query: 257 SPTQWAINRHTKYTH 271
+ + H + H
Sbjct: 57 RKSD--LGVHLRKQH 69
Score = 42.5 bits (101), Expect = 6e-06
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 9/55 (16%)
Query: 192 PYYCRY-------GSSMAIHLRTHTKE--KPFACEMCNYRAASKIAIYAHMRTTH 237
PY C +M +H+ E F C C+ A K + H+R H
Sbjct: 15 PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 27.9 bits (63), Expect = 0.94
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 186 FMCFACPYYCRYGSSMAIHLRT-HTKEKPFA 215
F C C S + +HLR H+ P +
Sbjct: 46 FHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 46.7 bits (110), Expect = 4e-07
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAI 263
+ + E + C+ C ++ H+ + H P+ Y C CNF + A+
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH--PNVVLNSSYVCVECNFLTKRYDAL 66
Query: 264 NRHTKYTH 271
+ H H
Sbjct: 67 SEHNLKYH 74
Score = 34.0 bits (77), Expect = 0.013
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 175 RRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRT-HT---KEKPFACEMCNYRAASKIAIY 230
++ + + C C + + H+ + H + C CN+ A+
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 231 AHMRTTH 237
H H
Sbjct: 68 EHNLKYH 74
Score = 28.2 bits (62), Expect = 1.4
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 231 AHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMN 273
AH H + E Y C +C F +P H H N
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPN 44
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 45.1 bits (106), Expect = 6e-07
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 186 FMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
++C C + S + H+RTHT +P+ C CN+ +K + HM++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 29.7 bits (66), Expect = 0.14
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 216 CEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTK 268
CE C R + H+RT ++ R YHC +CNF+ T+ + +H K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTH------TDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 27.0 bits (59), Expect = 1.3
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 175 RRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEK 212
+ R + R + C C + + ++ H+++ K
Sbjct: 19 KHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 1e-06
Identities = 39/214 (18%), Positives = 62/214 (28%), Gaps = 65/214 (30%)
Query: 100 ETIDDDIEMVFAAEKKADPKRDMEKVR--LRKQLMAIEEKIKAARHPLFSPDDQFFCIH- 156
++D +E E P M + ++Q+ ++ + L Q +
Sbjct: 322 SILEDSLE---NNEGVPSP---MLSISNLTQEQV---QDYVNKTNSHL-PAGKQ---VEI 368
Query: 157 --CNG---CVL---YADLLDHCKLCLR-RKRKNPM-----RRNF--------MCF---AC 191
NG V+ L L L RK K P R F F A
Sbjct: 369 SLVNGAKNLVVSGPPQSL---YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 192 PYYCRYGSSMAIHLR--THTKEKPFACEMCNYRAAS-KIAIY-----AHMRTTHIMPDTS 243
P++ L + K ++ A +I +Y + +R S
Sbjct: 426 PFHSHL-------LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL----SGS 474
Query: 244 EERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGP 277
R C P +W K TH+ GP
Sbjct: 475 ISER-IVD-CIIRLPVKWETTTQFKATHILDFGP 506
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 42.9 bits (102), Expect = 6e-06
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSE 244
C R + H +H+ EKP++C +C R K + H+R +H
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SH----DGS 61
Query: 245 ERR-YHCAFC--NFTSPTQWAINRHTKYTH 271
+ Y C C F+ P +N H K H
Sbjct: 62 VGKPYICQSCGKGFSRPDH--LNGHIKQVH 89
Score = 26.7 bits (60), Expect = 3.9
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 208 HTKEKPFACEMC 219
+ ACE+C
Sbjct: 2 SSGSSGVACEIC 13
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 42.2 bits (100), Expect = 7e-06
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 206 RTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCN 254
T E + C++C+ H T+H + Y C FC
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH----KRNVKVYPCPFCF 47
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 41.8 bits (99), Expect = 2e-05
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 189 FACPY-YC--RYG--SSMAIHLRTHTKEKPFAC--EMCNYRAASKIAIYAHMRTTHIMPD 241
C Y C Y S + HLRTHT EKP+ C E C++R A + H R H
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KH---- 70
Query: 242 TSEERRYHCAFCN 254
+ + + C CN
Sbjct: 71 -TGAKPFQCGVCN 82
Score = 39.9 bits (94), Expect = 1e-04
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
PY C + + H R HT KPF C +CN + + HM+
Sbjct: 45 PYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 40.6 bits (96), Expect = 4e-05
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 199 SSMAIHLRTHTKEKPFAC--EMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCN 254
S + HLRTHT EKP+ C + C ++ A + H R H + R + C C+
Sbjct: 21 SHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KH-----TGHRPFQCQKCD 72
Score = 37.9 bits (89), Expect = 4e-04
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
PY+C + + H R HT +PF C+ C+ + + HM+
Sbjct: 35 PYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 26.0 bits (58), Expect = 5.7
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 10/45 (22%)
Query: 208 HTKEKPFACEMCN--YRAASKIAIYAHMRTTHIMPDTSEERRYHC 250
T C Y +S + AH+R TH + E+ YHC
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLK--AHLR-TH-----TGEKPYHC 38
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 40.3 bits (95), Expect = 5e-05
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 199 SSMAIHLRTHTKEKPFAC--EMCNYRAASKIAIYAHMRT-THIMPDTSEERRYHCAFCNF 255
+ + +H +HT++ P+ C E C+ R + + H + ++ C+F
Sbjct: 17 NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC----KKDDSCSFV-G 71
Query: 256 TSPTQWAINRHTKYTH 271
+ T + +H H
Sbjct: 72 KTWTLYL--KHVAECH 85
Score = 38.4 bits (90), Expect = 3e-04
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 9/55 (16%)
Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTH 237
PY C + S + H + H + C++ + H+ H
Sbjct: 31 PYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 40.2 bits (95), Expect = 5e-05
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 199 SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC 253
+ H+RTHT EKPFAC++C + A H H
Sbjct: 17 DHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-------ILPILEDKV 64
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 40.5 bits (96), Expect = 6e-05
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSE 244
P+ C + H+R HT KP+ C+ C+Y AA ++ H+R H S+
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IH-----SD 61
Query: 245 ERRYHCAFC 253
ER + C C
Sbjct: 62 ERPFKCQIC 70
Score = 34.3 bits (80), Expect = 0.008
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
P+ C R S + +HLR+HT + +
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 28.5 bits (65), Expect = 0.72
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 207 THTKEKPFACEMCNYRAASKIAIYAHMRT 235
+ P CE+C + K + HMR
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRC 30
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 38.8 bits (90), Expect = 8e-05
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 178 RKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCN 220
R+ C C R + H +H+ EKP++ +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 40.5 bits (94), Expect = 8e-05
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 198 GSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTS 257
GSS ++ T F C+ C+ + + + HM T D + + ++
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDN-HETDNNNPKRWSK 62
Query: 258 PTQWAINRHTK 268
P + ++
Sbjct: 63 PRKRSLLEMEG 73
Score = 36.3 bits (83), Expect = 0.002
Identities = 14/87 (16%), Positives = 22/87 (25%), Gaps = 3/87 (3%)
Query: 152 FFCIHCNGC-VLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTK 210
F C C+ +L H + N + S+
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDN--HETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 211 EKPFACEMCNYRAASKIAIYAHMRTTH 237
+K C C + S + HM T
Sbjct: 78 QKVLKCMYCGHSFESLQDLSVHMIKTK 104
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 38.8 bits (91), Expect = 1e-04
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
H+R HT +KPF C +C + + H+RT
Sbjct: 40 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 31.1 bits (71), Expect = 0.068
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 199 SSMAIHLRTHTKEKPFAC--EMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCN 254
+++ ++ +P+AC E C+ R + + H+R H + ++ + C C
Sbjct: 7 NNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIR-IH-----TGQKPFQCRICM 56
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 39.4 bits (93), Expect = 1e-04
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 192 PYYCR-------YGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
P+ CR + H+RTHT EKPFAC++C + A H +
Sbjct: 34 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 38.6 bits (91), Expect = 2e-04
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 17/72 (23%)
Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACEMCNYRAASKIA-IYAHMRTTHIMPD 241
PY C S+ H+R HT +KPF C +C R S+ + H+R TH
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICM-RNFSRSDHLTTHIR-TH---- 57
Query: 242 TSEERRYHCAFC 253
+ E+ + C C
Sbjct: 58 -TGEKPFACDIC 68
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 37.9 bits (89), Expect = 1e-04
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
+ EKP+ CE+C R + +H+R
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 34.0 bits (79), Expect = 0.003
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFA 215
PY C R+ ++ HLR HT P +
Sbjct: 11 PYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 38.7 bits (91), Expect = 1e-04
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 18/74 (24%)
Query: 192 PYYCRYG---------SSMAIHLR-THTKEKPFACE--MCNYRAASKIAIYAHMRTTHIM 239
C + + H + H +K F+C C K + HM+ H
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK-LH-- 63
Query: 240 PDTSEERRYHCAFC 253
S+ R Y C F
Sbjct: 64 ---SDTRDYICEFS 74
Score = 29.1 bits (66), Expect = 0.45
Identities = 5/47 (10%), Positives = 15/47 (31%), Gaps = 7/47 (14%)
Query: 208 HTKEKPFACEM--CNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF 252
+ C+ C +++ + H + H ++ + C
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH-----IHQKSFSCPE 43
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 37.7 bits (88), Expect = 2e-04
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIM 239
R T KPF C C+ + + H + H++
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK-RHML 36
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 40.3 bits (95), Expect = 2e-04
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 17/70 (24%)
Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACEM--CNYRAASKIAIYAHMRTTHIMP 240
P+ C + ++ IH RTHT EKPF CE C+ R A+ HM H
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH-VH--- 145
Query: 241 DTSEERRYHC 250
+ ++
Sbjct: 146 --TSDKSGPS 153
Score = 38.0 bits (89), Expect = 0.001
Identities = 3/53 (5%), Positives = 12/53 (22%), Gaps = 6/53 (11%)
Query: 203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNF 255
+ + C+ ++ + H+ H+ +
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHV------GGPEQNNHVCY 61
Score = 34.6 bits (80), Expect = 0.013
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 199 SSMAIHLRTHTKEKPFAC--EMCN--YRAASKIAIYAHMRT 235
+ H+R HT EKPF C C + + + I H RT
Sbjct: 76 YKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKI--HKRT 114
Score = 29.9 bits (68), Expect = 0.60
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 13/78 (16%)
Query: 169 HCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNY------- 221
K L K + + + +C + H+ P Y
Sbjct: 9 PIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPRE 68
Query: 222 ----RAASKIAIYAHMRT 235
+A K+ H+R
Sbjct: 69 GKSFKAKYKLVN--HIRV 84
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 38.3 bits (90), Expect = 2e-04
Identities = 5/35 (14%), Positives = 8/35 (22%), Gaps = 7/35 (20%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
+ C ++MA H E
Sbjct: 47 AFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 35.6 bits (83), Expect = 0.002
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 200 SMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTH 237
S RTHT EKP+AC C+ K + H + H
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39
Score = 30.6 bits (70), Expect = 0.14
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 11/39 (28%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKE----KPFACEMC 219
PY C R + +H + + F C C
Sbjct: 15 PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKC 53
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 39.0 bits (92), Expect = 3e-04
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
PY C + + H R HT KPF C+ C + + + H RT
Sbjct: 36 PYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
Score = 37.5 bits (88), Expect = 8e-04
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 17/73 (23%)
Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACEM--CNYRAASKIAIYAHMRTTHIMP 240
P+ C Y S + +H R HT EKP+ C+ C R + + H R H
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RH--- 61
Query: 241 DTSEERRYHCAFC 253
+ + + C C
Sbjct: 62 --TGVKPFQCKTC 72
Score = 35.2 bits (82), Expect = 0.006
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEM--CNYRAASKIAIYAHMRT 235
P+ C + H RTHT EKPF+C C + A + H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.8 bits (86), Expect = 3e-04
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 192 PYYCR-------YGSSMAIHLRTHTKEKPFAC 216
P+ C+ + S+ HLR+H + P
Sbjct: 12 PFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 35.3 bits (82), Expect = 0.001
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
+ T EKPF C+ C + +++ H+R+
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 39.1 bits (92), Expect = 4e-04
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 16/70 (22%)
Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACE--MCNYRAASKIAIYAHMRTTHIMP 240
P+ C + ++ HLR+HT EKP+ CE C+ ++ H TH
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH--- 123
Query: 241 DTSEERRYHC 250
S E+ Y C
Sbjct: 124 --SNEKPYVC 131
Score = 34.9 bits (81), Expect = 0.013
Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 21/77 (27%)
Query: 192 PYYC-------RYGSSMAIHL---RTHTKEKPFACEMCNYRAASK--IAIY---AHMRTT 236
+ H+ H + K F C + A Y HMR
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR-R 61
Query: 237 HIMPDTSEERRYHCAFC 253
H + E+ + C F
Sbjct: 62 H-----TGEKPHKCTFE 73
Score = 34.5 bits (80), Expect = 0.017
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 199 SSMAIHLRTHTKEKPFAC--EMCNYRAASKIAIYAHMRT 235
+ +H+R HT EKP C E C + + H+R+
Sbjct: 53 YMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91
Score = 28.3 bits (64), Expect = 2.2
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 211 EKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCN 254
E + C+ S+ + H+ + HI E + + C +
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHI---HGERKEFVCHWGG 41
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 37.0 bits (87), Expect = 4e-04
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
PY C RY ++A H HT EKP+ C +C
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNIC 51
Score = 34.7 bits (81), Expect = 0.003
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 198 GSSMAIHLRTHTKEKPFACEMC 219
G H +KP+ C+ C
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRC 23
Score = 29.7 bits (68), Expect = 0.23
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPF 214
PY C +++ H R H+ EKP+
Sbjct: 45 PYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 36.1 bits (84), Expect = 5e-04
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 204 HLRTHTKEKPFAC--EMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA 251
+ T EKPFAC C +R + + H R +H S + +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR-SH-----SGVKPSGPS 46
Score = 32.7 bits (75), Expect = 0.010
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 9/35 (25%)
Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACE 217
P+ C + ++ H R+H+ KP
Sbjct: 12 PFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 37.0 bits (87), Expect = 5e-04
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
PY C S M H HT EKP C++C
Sbjct: 29 PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Score = 34.3 bits (80), Expect = 0.005
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 199 SSMAIHLRTHTKEKPFACEMC 219
S+++ HL H+ +P+ C+ C
Sbjct: 15 STLSTHLLIHSDTRPYPCQYC 35
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 35.6 bits (83), Expect = 7e-04
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
+ EKP+ CE C R + AH+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI 33
Score = 28.3 bits (64), Expect = 0.33
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 7/31 (22%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFA 215
PY C + + H+ HT P +
Sbjct: 11 PYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 35.9 bits (84), Expect = 8e-04
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
+ C + H R+HT EKP+ C +C
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLC 36
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 37.0 bits (87), Expect = 9e-04
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
PY C R + H H+KEKPF C+ C
Sbjct: 45 PYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Score = 36.6 bits (86), Expect = 0.001
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
+ C ++ IH RTHT E+P+ C++C
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDIC 51
Score = 35.5 bits (83), Expect = 0.004
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 199 SSMAIHLRTHTKEKPFACEMC 219
S + +K F C+ C
Sbjct: 3 SGSSGGRLPSKTKKEFICKFC 23
Score = 33.2 bits (77), Expect = 0.026
Identities = 5/32 (15%), Positives = 10/32 (31%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
P+ C ++A+H H +
Sbjct: 73 PFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C R SS+AIH TH+ EKP
Sbjct: 12 PYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.029
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 1 GSSGSSGTGEKPYKCNEC 18
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 37.1 bits (87), Expect = 0.001
Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 7/54 (12%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHI 238
C + +H R HT EKPF C C K + H +
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Score = 36.3 bits (85), Expect = 0.003
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTH 237
+ C R + +H+ +HT E P+ C C+ + K + +HM H
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 30.6 bits (70), Expect = 0.22
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 10/54 (18%)
Query: 192 PYYC-------RYGSSMAIHLR---THTKEKPFACEMCNYRAASKIAIYAHMRT 235
P+ C ++ H + E+ F C +C ++ + HM +
Sbjct: 35 PFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS 88
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 36.3 bits (85), Expect = 0.002
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 192 PYYC------RYGSSMAIHLRTHTKEKPFACEMC 219
Y C + S H+ H +P+ C +C
Sbjct: 10 LYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVC 43
Score = 29.7 bits (68), Expect = 0.40
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 5/33 (15%)
Query: 192 PYYC-----RYGSSMAIHLRTHTKEKPFACEMC 219
PY C R+ + H + K +
Sbjct: 65 PYECNICAKRFMWRDSFHRHVTSCTKSYEAAKA 97
Score = 28.2 bits (64), Expect = 1.2
Identities = 2/12 (16%), Positives = 6/12 (50%)
Query: 206 RTHTKEKPFACE 217
+ +K + C+
Sbjct: 3 SGSSGDKLYPCQ 14
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C RYGSS+ +H R HT EKP
Sbjct: 12 PYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.024
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C++C
Sbjct: 1 GSSGSSGTGEKPYKCDVC 18
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 35.5 bits (83), Expect = 0.002
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
Y C + S ++ H RTHT EKP+ C+ C
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52
Score = 34.3 bits (80), Expect = 0.005
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 199 SSMAIHLRTHTKEKPFACEMC 219
S + + + C+ C
Sbjct: 4 GSSGRSEWQQRERRRYKCDEC 24
Score = 28.2 bits (64), Expect = 0.68
Identities = 9/30 (30%), Positives = 10/30 (33%), Gaps = 7/30 (23%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPF 214
PY C S + H R HT P
Sbjct: 46 PYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 35.4 bits (82), Expect = 0.002
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
Query: 192 PYYCRY---------GSSMAIHLRTHTKEKPFAC--EMCNYRAASKIAIYAHMRT 235
+ C + S + H RTHT EKPF+C + C R A + H RT
Sbjct: 17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 28.1 bits (63), Expect = 0.66
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 199 SSMAIHLRTHTKEKPFAC--EMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF 252
S + ++ + C C + AH R TH + E+ + C++
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR-TH-----TGEKPFSCSW 52
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 34.5 bits (80), Expect = 0.002
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 202 AIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHC 250
+ T +KP+ C C ++ H R H + E+
Sbjct: 1 GSSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH-----TGEKPSGP 44
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 34.5 bits (80), Expect = 0.002
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C R+ S + H R H+ EKP
Sbjct: 12 PYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.041
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C+ C
Sbjct: 1 GSSGSSGTGEKPYNCKEC 18
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C R S + IH RTHT E +
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 31.3 bits (72), Expect = 0.029
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 202 AIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
+ T KP+ C C SK + H RT
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT 34
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 34.8 bits (81), Expect = 0.003
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
PY C S + H R HT EKP+ C C
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLEC 48
Score = 31.3 bits (72), Expect = 0.057
Identities = 8/31 (25%), Positives = 9/31 (29%), Gaps = 7/31 (22%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFA 215
PY C S + H R HT
Sbjct: 42 PYKCLECGKAFSQNSGLINHQRIHTSGPSSG 72
Score = 30.1 bits (69), Expect = 0.15
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 204 HLRTHTKEKPFACEMC 219
H+ EKP+ C C
Sbjct: 5 SSGIHSGEKPYGCVEC 20
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 35.3 bits (81), Expect = 0.003
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 199 SSMAIHLRTHTKEKPFAC 216
+ H+R HT EK
Sbjct: 76 YKLVNHIRVHTGEKSGPS 93
Score = 30.3 bits (68), Expect = 0.21
Identities = 5/44 (11%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 207 THTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHC 250
+ + C+ ++ + H+ H+ E+ + C
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHV--GGPEQNNHVC 60
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.003
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ EK + C++C
Sbjct: 1 GSSGSSGMGEKCYKCDVC 18
Score = 31.0 bits (71), Expect = 0.045
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
Y C S + H R HT EKP
Sbjct: 12 CYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
P+ C S + +H +TH +EKP
Sbjct: 10 PFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 26.0 bits (58), Expect = 2.0
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 206 RTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHC 250
+ EKPF C C +SK + H + TH +EE+
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQ-TH-----AEEKPSGP 41
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C S++ +H RTHT E +
Sbjct: 12 PYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 33.6 bits (78), Expect = 0.004
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 1 GSSGSSGTGEKPYECNEC 18
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.1 bits (79), Expect = 0.003
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
P C + S + +H RTH +K
Sbjct: 12 PCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 31.0 bits (71), Expect = 0.034
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 204 HLRTHTKEKPFACEMC 219
+ T EKP C C
Sbjct: 3 SGSSGTGEKPCKCTEC 18
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 36.7 bits (86), Expect = 0.003
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
PY C +A H RTHT EKP+ C C
Sbjct: 21 PYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPEC 55
Score = 36.7 bits (86), Expect = 0.004
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
PY C + H RTHT EKP+ C C
Sbjct: 49 PYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Score = 36.7 bits (86), Expect = 0.004
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
PY C ++ H RTHT EKP+ C C
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Score = 36.3 bits (85), Expect = 0.005
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
PY C +++ H RTHT EKP+AC C
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC 111
Score = 35.9 bits (84), Expect = 0.008
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
PY C + + H RTHT EKP+ C C
Sbjct: 105 PYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Score = 35.1 bits (82), Expect = 0.013
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 199 SSMAIHLRTHTKEKPFACEMC 219
SS EKP+AC C
Sbjct: 7 SSSVAQAALEPGEKPYACPEC 27
Score = 29.3 bits (67), Expect = 1.1
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 7/29 (24%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKP 213
PY C ++ +H RTHT +K
Sbjct: 161 PYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 0.004
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
P+ C S H R+H+ EKP
Sbjct: 12 PFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.014
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ + EKPF CE C
Sbjct: 1 GSSGSSGSGEKPFKCEEC 18
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 35.6 bits (81), Expect = 0.004
Identities = 17/98 (17%), Positives = 25/98 (25%), Gaps = 9/98 (9%)
Query: 174 LRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHM 233
+ + C C H R C C+ R S H
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHE 62
Query: 234 RTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTH 271
E ++ C C T + ++I RH H
Sbjct: 63 SKC-------EYKKLTCLECMRTFKSSFSIWRHQVEVH 93
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 33.7 bits (78), Expect = 0.004
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T +KPF C C
Sbjct: 1 GSSGSSGTGQKPFECTHC 18
Score = 32.1 bits (74), Expect = 0.015
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
P+ C R ++ H R HT EK
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 0.005
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ CE C
Sbjct: 1 GSSGSSGTGEKPYKCEKC 18
Score = 31.3 bits (72), Expect = 0.030
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C ++ +H + HT E+P
Sbjct: 12 PYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 33.7 bits (78), Expect = 0.005
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C + S + +H RTH +
Sbjct: 12 PYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 31.3 bits (72), Expect = 0.031
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ + EKP+ C C
Sbjct: 1 GSSGSSGSGEKPYECNEC 18
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 0.005
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
+ C Y S++ IH R H EK
Sbjct: 12 SHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 29.9 bits (68), Expect = 0.083
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 204 HLRTHTKEKPFACEMC 219
+ + EK C+ C
Sbjct: 3 SGSSGSGEKSHTCDEC 18
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.005
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C + +S+ H R H+ EKP
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.005
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C++C
Sbjct: 1 GSSGSSGTGEKPYECDVC 18
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 33.7 bits (78), Expect = 0.005
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 192 PYYC-------RYGSSMAIHL-RTHTKEKPFACEMC 219
PY C + H+ + HT E+P C++
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 32.9 bits (76), Expect = 0.008
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC 253
+ + KP+ C+ C + + H++ H + ER + C
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH-----TSERPHKCQVW 47
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 0.005
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C SS+ H HT +KP
Sbjct: 12 PYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 31.0 bits (71), Expect = 0.036
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 1 GSSGSSGTGEKPYECNQC 18
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.005
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C SS+ H HT EKP
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.017
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T KP+ C C
Sbjct: 1 GSSGSSGTGVKPYMCNEC 18
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 33.2 bits (77), Expect = 0.005
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
P+ C S +A H R HT EKP
Sbjct: 12 PFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.046
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 204 HLRTHTKEKPFACEMC 219
+ T EKPF C C
Sbjct: 3 SGSSGTGEKPFECAEC 18
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 33.3 bits (77), Expect = 0.006
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C + SS+ H R+HT EKP
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.035
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T ++P+ C C
Sbjct: 1 GSSGSSGTGQRPYECIEC 18
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.006
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C + S + H R HT EKP
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.045
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 204 HLRTHTKEKPFACEMC 219
+ T EKP+ CE C
Sbjct: 3 SGSSGTGEKPYNCEEC 18
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.006
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C + S+++H R H+ +KP
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 32.5 bits (75), Expect = 0.012
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C +C
Sbjct: 1 GSSGSSGTGEKPYECSVC 18
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.006
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
P+ C + S + +H R HT E P
Sbjct: 12 PHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 30.2 bits (69), Expect = 0.073
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 204 HLRTHTKEKPFACEMC 219
+ T EKP C C
Sbjct: 3 SGSSGTGEKPHECREC 18
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 35.2 bits (82), Expect = 0.006
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 11/55 (20%)
Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACEM--CNYRAASKIAIYAHMRT 235
P+ C + ++ H+R HT ++P+ C CN + A + +H+ T
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 33.6 bits (78), Expect = 0.022
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
+ C S + H HT EKPF C
Sbjct: 34 VHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Score = 32.5 bits (75), Expect = 0.052
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 14/55 (25%)
Query: 192 PYYC---------RYGSSMAIHLRTHTKEKPFACEMCN--YRAASKIAIYAHMRT 235
C R S+M HL TH + C C + +SK+ H
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKR--HQLV 56
Score = 32.5 bits (75), Expect = 0.057
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 9/32 (28%)
Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPF 214
PY C + +++ H+ TH K K
Sbjct: 92 PYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.2 bits (77), Expect = 0.006
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
P+ C S++ +H RTHT EKP
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.019
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKPF C C
Sbjct: 1 GSSGSSGTGEKPFECSEC 18
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.007
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C +C
Sbjct: 1 GSSGSSGTGEKPYECSIC 18
Score = 32.1 bits (74), Expect = 0.017
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C S + +H + HT EKP
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 32.9 bits (76), Expect = 0.007
Identities = 9/33 (27%), Positives = 10/33 (30%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C + H HT EKP
Sbjct: 12 PYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.033
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ CE C
Sbjct: 1 GSSGSSGTGEKPYKCEEC 18
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.2 bits (77), Expect = 0.007
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKPF C++C
Sbjct: 1 GSSGSSGTGEKPFKCDIC 18
Score = 32.1 bits (74), Expect = 0.015
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
P+ C S + H HT EKP
Sbjct: 12 PFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.007
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C S ++ H RTHT EKP
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.021
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 203 IHLRTHTKEKPFACEMC 219
+ + EKP+ C C
Sbjct: 2 SSGSSGSGEKPYGCNEC 18
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.007
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C R+ S ++ H R HT EKP
Sbjct: 12 PYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.030
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 204 HLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 3 SGSSGTGEKPYKCNEC 18
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.007
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C S + IH+RTH+ EKP
Sbjct: 12 PYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.011
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 202 AIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHC 250
+ EKP+ C C +SK + HMR TH S E+
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIHMR-TH-----SGEKPSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 32.9 bits (76), Expect = 0.007
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C + +H R HT+EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 29.0 bits (66), Expect = 0.22
Identities = 3/16 (18%), Positives = 5/16 (31%)
Query: 204 HLRTHTKEKPFACEMC 219
+ P+ C C
Sbjct: 3 SGSSGAGVNPYKCSQC 18
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.008
Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C S +A H R HT EKP
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.076
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 204 HLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 3 SGSSGTGEKPYKCNEC 18
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.008
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C R S++ H HT EKP
Sbjct: 12 PYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.015
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 1 GSSGSSGTGEKPYKCNEC 18
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.008
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C + S + IH + HT E+
Sbjct: 12 PYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 30.6 bits (70), Expect = 0.051
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 1 GSSGSSGTGEKPYKCSDC 18
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 32.9 bits (76), Expect = 0.008
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C S + +H R+HT KP
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 31.3 bits (72), Expect = 0.025
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T KP+ C C
Sbjct: 1 GSSGSSGTGVKPYGCSQC 18
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 32.9 bits (76), Expect = 0.008
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
+ C SS+ +H H EKP
Sbjct: 12 TWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.17
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 204 HLRTHTKEKPFACEMC 219
+ EK + C C
Sbjct: 3 SGSSGMGEKTWKCREC 18
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.008
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 1 GSSGSSGTGEKPYRCAEC 18
Score = 32.1 bits (74), Expect = 0.018
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C S++ H + HT EKP
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 32.9 bits (76), Expect = 0.009
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
+ C S+ H R HT EKP
Sbjct: 12 GHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.030
Identities = 3/18 (16%), Positives = 5/18 (27%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ E+ C C
Sbjct: 1 GSSGSSGHGERGHRCSDC 18
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.010
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ + EKP+ CE C
Sbjct: 1 GSSGSSGSVEKPYKCEDC 18
Score = 31.3 bits (72), Expect = 0.026
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C ++ +H R H EK
Sbjct: 12 PYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.010
Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C S +A H R HT EKP
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.037
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 203 IHLRTHTKEKPFACEMC 219
+ T KP+ C C
Sbjct: 2 SSGSSGTGGKPYQCNEC 18
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.010
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
P+ C S +A HLR H++EK
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 29.8 bits (68), Expect = 0.086
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 204 HLRTHTKEKPFACEMC 219
+ + E+PF C C
Sbjct: 3 SGSSGSGERPFKCNEC 18
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.011
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 1 GSSGSSGTGEKPYRCGEC 18
Score = 30.6 bits (70), Expect = 0.060
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C +++ H R HT EKP
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.011
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C S + HL+ H +EK
Sbjct: 12 PYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 29.4 bits (67), Expect = 0.16
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 204 HLRTHTKEKPFACEMC 219
+ + E+P+ C C
Sbjct: 3 SGSSGSGERPYGCNEC 18
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.012
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C S++ H + HTK+KP
Sbjct: 12 PYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 30.9 bits (71), Expect = 0.035
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 1 GSSGSSGTGEKPYICAEC 18
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.012
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C + + HLR HT+E
Sbjct: 12 PYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 32.1 bits (74), Expect = 0.015
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP++C +C
Sbjct: 1 GSSGSSGTGEKPYSCNVC 18
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 32.5 bits (75), Expect = 0.012
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKPF C C
Sbjct: 1 GSSGSSGTGEKPFKCVEC 18
Score = 31.7 bits (73), Expect = 0.021
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
P+ C S++ +H + HT EKP
Sbjct: 12 PFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.6 bits (75), Expect = 0.012
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C SS H R HT ++P
Sbjct: 12 PYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 31.0 bits (71), Expect = 0.034
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 1 GSSGSSGTGEKPYKCMEC 18
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.012
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
+ C SS+ +H R HT EKP
Sbjct: 12 LFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.039
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ +K F C C
Sbjct: 1 GSSGSSGAGKKLFKCNEC 18
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.012
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
P+ C + H R HT EKP
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.019
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKPF C C
Sbjct: 1 GSSGSSGTGEKPFDCIDC 18
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.013
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C + H THT+EKP
Sbjct: 12 PYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 30.2 bits (69), Expect = 0.077
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 204 HLRTHTKEKPFACEMC 219
+ EKP+ C C
Sbjct: 3 SGSSGEGEKPYQCSEC 18
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.013
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
P+ C + +++ IH + HT E+P
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 30.9 bits (71), Expect = 0.036
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 204 HLRTHTKEKPFACEMC 219
+ T E PF C C
Sbjct: 3 SGSSGTGENPFICSEC 18
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.014
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
Y C + H R H+ EKP
Sbjct: 12 LYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.018
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EK + C+ C
Sbjct: 1 GSSGSSGTGEKLYNCKEC 18
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.016
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C++C
Sbjct: 1 GSSGSSGTGEKPYECKVC 18
Score = 31.3 bits (72), Expect = 0.030
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C + +A H +THT EKP
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.016
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C + H R HT E+
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 29.8 bits (68), Expect = 0.087
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 204 HLRTHTKEKPFACEMC 219
+ + +KP+ C+ C
Sbjct: 3 SGSSGSGKKPYECKEC 18
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 34.9 bits (81), Expect = 0.017
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 9/35 (25%)
Query: 192 PYYC---------RYGSSMAIHLRTHTKEKPFACE 217
Y C + HL HT EKPF C+
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCK 46
Score = 33.7 bits (78), Expect = 0.035
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 23/96 (23%)
Query: 190 ACPYYC---------RYGSSMAIHLRTHTKEKPFAC--EMCNYRAASKIAIYAHMRT-TH 237
C Y C + + + +H +HT++ P+ C E C+ R + + H +
Sbjct: 102 ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Query: 238 IMPDTSEERRYHCAFC--NFTSPTQWAINRHTKYTH 271
++ C+F +T +H H
Sbjct: 162 YPC----KKDDSCSFVGKTWTLYL-----KHVAECH 188
Score = 33.7 bits (78), Expect = 0.036
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 9/35 (25%)
Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACE 217
P+ C+ + H THT EK F C+
Sbjct: 42 PFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD 76
Score = 30.3 bits (69), Expect = 0.50
Identities = 6/36 (16%), Positives = 9/36 (25%), Gaps = 6/36 (16%)
Query: 204 HLRTHTKEKPFACEM--CN--YRAASKIAIYAHMRT 235
K + C C Y K+ H+
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQA--HLCK 36
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.019
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
+ C S++++H + HT EKP
Sbjct: 12 HFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.034
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T K F C C
Sbjct: 1 GSSGSSGTGGKHFECTEC 18
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.021
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C + + H R HT EKP
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.039
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 204 HLRTHTKEKPFACEMC 219
+ + EKP+ C+ C
Sbjct: 3 SGSSGSGEKPYVCDYC 18
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.021
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ + EKPF C+ C
Sbjct: 1 GSSGSSGSGEKPFKCKEC 18
Score = 31.7 bits (73), Expect = 0.024
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
P+ C R +A HLR HT EKP
Sbjct: 12 PFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.021
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T +KP+ C C
Sbjct: 1 GSSGSSGTGKKPYKCNEC 18
Score = 30.9 bits (71), Expect = 0.036
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C S +A H HT EKP
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (73), Expect = 0.022
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
+ C S + H R HT EKP
Sbjct: 12 SHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.054
Identities = 3/16 (18%), Positives = 5/16 (31%)
Query: 204 HLRTHTKEKPFACEMC 219
+ + K C C
Sbjct: 3 SGSSGSSTKSHQCHEC 18
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.022
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C + H RTH EKP
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.025
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T E P+ C C
Sbjct: 1 GSSGSSGTGENPYECHEC 18
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 31.7 bits (73), Expect = 0.022
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
Y C S ++ H + HT EKP
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.050
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EK + C C
Sbjct: 1 GSSGSSGTGEKRYKCNEC 18
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.024
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T E+P C C
Sbjct: 1 GSSGSSGTGERPHKCNEC 18
Score = 30.9 bits (71), Expect = 0.035
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
P+ C + + H R HT EKP
Sbjct: 12 PHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.024
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C S + IH ++HT E+
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 31.3 bits (72), Expect = 0.026
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 1 GSSGSSGTGEKPYKCSDC 18
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.024
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 204 HLRTHTKEKPFACEMC 219
+ + EKP+ C C
Sbjct: 3 SGSSGSGEKPYKCVEC 18
Score = 31.0 bits (71), Expect = 0.041
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C + + H R HT EK
Sbjct: 12 PYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.025
Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C R S +A H HT EKP
Sbjct: 12 PYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.031
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 1 GSSGSSGTGEKPYKCHEC 18
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.025
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ + EKPF CE C
Sbjct: 1 GSSGSSGSGEKPFQCEEC 18
Score = 31.0 bits (71), Expect = 0.041
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
P+ C S + H R HT EKP
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.025
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C S++ H + HT EKP
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.061
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 204 HLRTHTKEKPFACEMC 219
+ T E+P+ C +C
Sbjct: 3 SGSSGTGERPYICTVC 18
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 31.4 bits (72), Expect = 0.026
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
+ EKP+ C+ C + K ++ H+R
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV 33
Score = 31.0 bits (71), Expect = 0.034
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 7/31 (22%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFA 215
PY C S+ +H+R HT P +
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.027
Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C S + H HT EKP
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.059
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 204 HLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 3 SGSSGTGEKPYKCNEC 18
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 31.5 bits (72), Expect = 0.028
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFA 215
PY C S+A+H R+ ++ P +
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 27.2 bits (61), Expect = 0.74
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
+ E P+ C C + ++ H R+
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS 33
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.028
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ + EKPF CE C
Sbjct: 1 GSSGSSGSGEKPFKCEEC 18
Score = 31.0 bits (71), Expect = 0.035
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
P+ C S + H R HT EKP
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.029
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 1 GSSGSSGTGEKPYICNEC 18
Score = 30.2 bits (69), Expect = 0.065
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C S + H R HT EKP
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 31.3 bits (72), Expect = 0.029
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C+ C
Sbjct: 1 GSSGSSGTGEKPYECKEC 18
Score = 31.3 bits (72), Expect = 0.030
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C + + H R HT EKP
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.031
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C S + +H R HT E P
Sbjct: 12 PYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 31.0 bits (71), Expect = 0.036
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 1 GSSGSSGTGEKPYECSDC 18
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.032
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C R S + H H+ E+P
Sbjct: 12 PYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 30.9 bits (71), Expect = 0.044
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C++C
Sbjct: 1 GSSGSSGTGEKPYKCQVC 18
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.033
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C S +A H R HT KP
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 30.2 bits (69), Expect = 0.081
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 1 GSSGSSGTGEKPYKCNEC 18
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.033
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
Y C S++++H R H EKP
Sbjct: 12 HYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.089
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 204 HLRTHTKEKPFACEMC 219
+ T E+ + C C
Sbjct: 3 SGSSGTGERHYECSEC 18
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 31.9 bits (72), Expect = 0.035
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 14/81 (17%)
Query: 199 SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSP 258
S + H ++ C C I R+T S + C C S
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKC--------GIIFIRRSTL-----SRRKTPMCEKCRKDSC 50
Query: 259 TQWAINRHTK-YTHMNTSGPT 278
+ A+N+ + TSGP+
Sbjct: 51 QEAALNKDEGNESGKKTSGPS 71
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.035
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ + EKP+ C C
Sbjct: 1 GSSGSSGSGEKPYKCSEC 18
Score = 29.8 bits (68), Expect = 0.097
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C + + H R HT +P
Sbjct: 12 PYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.036
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C S +A H R HT KP
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 29.8 bits (68), Expect = 0.099
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 204 HLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 3 SGSSGTGEKPYKCNEC 18
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.038
Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C S + H R HT EKP
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.059
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ + EKP+ C C
Sbjct: 1 GSSGSSGSGEKPYKCNEC 18
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.044
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKPF C C
Sbjct: 1 GSSGSSGTGEKPFKCGEC 18
Score = 30.6 bits (70), Expect = 0.059
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
P+ C + H R HT EKP
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.044
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T E+ + C C
Sbjct: 1 GSSGSSGTGERHYECSEC 18
Score = 30.9 bits (71), Expect = 0.046
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
Y C S++ +H R HT EKP
Sbjct: 12 HYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 32.6 bits (73), Expect = 0.048
Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 8/98 (8%)
Query: 174 LRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHM 233
L ++K +R SS L F C +C +S +++ H+
Sbjct: 35 LTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHI 94
Query: 234 RTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTH 271
R E C C + + H H
Sbjct: 95 R--------YTEHTKVCPVCKKEFTSTDSALDHVCKKH 124
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.5 bits (70), Expect = 0.048
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACE 217
PY C S +A H HT EKP
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.052
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T EKP+ C C
Sbjct: 1 GSSGSSGTGEKPYKCNEC 18
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 30.6 bits (70), Expect = 0.056
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C + H RTH E +
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 26.7 bits (60), Expect = 1.3
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 206 RTHTKEKPFACEMC 219
+ E P+ C C
Sbjct: 3 SGSSGENPYECSEC 16
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 30.2 bits (69), Expect = 0.061
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 202 AIHLRTHTKEKPFACEMC 219
+ T K + C C
Sbjct: 1 GSSGSSGTDSKSYNCNEC 18
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 30.5 bits (70), Expect = 0.061
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 199 SSMAIHLRTHTKEKPFAC 216
+ H +TH+ + +
Sbjct: 26 DQLVSHQKTHSGQSGPSS 43
Score = 28.6 bits (65), Expect = 0.25
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 204 HLRTHTKEKPFACEMC 219
+ T E P+ C C
Sbjct: 3 SGSSGTGENPYECCEC 18
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.062
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 9/27 (33%)
Query: 123 EKVRLRKQLMAIEEKIKAARHPLFSPD 149
EK L+K ++ +K L++ D
Sbjct: 18 EKQALKK----LQASLK-----LYADD 35
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.8 bits (66), Expect = 0.082
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 209 TKEKPFACEMCNYRAASKIAIYAHMR 234
+ KP+ C C+Y +A K + H+R
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLR 30
Score = 28.3 bits (62), Expect = 0.37
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 186 FMCFACPYYCRYGSSMAIHLRTHTKEK 212
+ C C Y +++ +HLR HT EK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 29.8 bits (68), Expect = 0.086
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 7/31 (22%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFA 215
Y C R S+ +H R HT P +
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 24.5 bits (54), Expect = 7.9
Identities = 2/14 (14%), Positives = 7/14 (50%)
Query: 206 RTHTKEKPFACEMC 219
+ ++ + C+ C
Sbjct: 3 SGSSGQRVYECQEC 16
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP
protein, ATA-box DNA, transcription/DNA complex; 2.50A
{Saccharomyces cerevisiae}
Length = 286
Score = 32.6 bits (72), Expect = 0.15
Identities = 15/100 (15%), Positives = 35/100 (35%)
Query: 38 KKNHQNRNQKKMKSKTAKYWTGGEEDVDKVEEEPPEPEPEEDEVEDGEILDNEDDTKSQG 97
++ + +++K + + + K++ + + D E G LD+ DD
Sbjct: 173 DESEKKDDEEKEEDVEKTRKEKEQIEQVKLQAKKEKRSALLDTDEVGSELDDSDDDYLIS 232
Query: 98 SVETIDDDIEMVFAAEKKADPKRDMEKVRLRKQLMAIEEK 137
E D ++ K + K L+ ++ I
Sbjct: 233 EGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRN 272
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 31.4 bits (71), Expect = 0.33
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 60 GEEDVDKVEEEPPEPEPEEDEVEDGEILDNEDDTKSQGSVETIDDDIEMV--FAAEKKAD 117
E + + +P EED + +E + E D++ + D
Sbjct: 45 EEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSID 104
Query: 118 PKRDMEKV-RLRKQLMAIEEKIKA 140
P+ EK LR Q + + IKA
Sbjct: 105 PELAREKFAELRAQYVVTRDTIKA 128
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 28.1 bits (63), Expect = 0.38
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 206 RTHTKEKPFACEMC 219
+ EKP++C C
Sbjct: 3 SGSSGEKPYSCAEC 16
Score = 25.0 bits (55), Expect = 4.9
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 7/32 (21%)
Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFAC 216
PY C + + H + HT + +
Sbjct: 10 PYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 0.43
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 212 KPFACEMCNYRAASKIAIYAHM 233
KPF C +C Y SK + AHM
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHM 29
Score = 27.9 bits (61), Expect = 0.46
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 184 RNFMCFACPYYCRYGSSMAIHLRTHTKEK 212
+ F C C Y R S++ H+ H+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 0.45
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 184 RNFMCFACPYYCRYGSSMAIHLRTHTKEK 212
+ F C C ++ S+ HLR HT EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 28.2 bits (62), Expect = 0.46
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 210 KEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERR 247
++KP+AC++C R ++ + H +H+ + E++
Sbjct: 4 RDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKE 41
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 27.9 bits (62), Expect = 0.48
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
+ E PF C C+ + + H RT
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERT 34
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 30.7 bits (70), Expect = 0.56
Identities = 5/36 (13%), Positives = 13/36 (36%)
Query: 46 QKKMKSKTAKYWTGGEEDVDKVEEEPPEPEPEEDEV 81
Q M+ + + + + P P P + ++
Sbjct: 21 QSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDL 56
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
a.143.1.2 PDB: 1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F
1pqv_F 1r5u_F 1r9s_F* 1r9t_F* 1sfo_F* 1twa_F* 1twc_F*
1i50_F* 1twg_F* 1twh_F* 1wcm_F 1y1v_F 1y1w_F 1y1y_F
1y77_F* ...
Length = 155
Score = 29.6 bits (66), Expect = 0.71
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 61 EEDVDKVEE--EPPEPEPEEDE--VEDGEILDNEDDTKSQGSVETIDDDIEMVFAAEKKA 116
EE + E E + E DE E+ + + T + G + F ++
Sbjct: 5 EEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQI 64
Query: 117 DPKRDMEKVRLRKQ 130
K EK + Q
Sbjct: 65 RRKTLKEKAIPKDQ 78
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 27.2 bits (59), Expect = 0.81
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 208 HTKEKPFACEMCNYRAASKIAIYAHMRTTH 237
+ EKP++C +C R K + H+R+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 30.4 bits (68), Expect = 0.82
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 11 QQIQKTNPKLKKVNYPIIVARKMWTKLKKNHQNRNQKKMKSKTAKYWTGGEEDVDK--VE 68
++ ++ N + +++ M+ K + K K E+ D +E
Sbjct: 396 KKAKEHNERDRRI------YANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAME 449
Query: 69 EEPPEPE 75
EE PE
Sbjct: 450 EEKPEGH 456
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 26.7 bits (58), Expect = 0.86
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 211 EKPFACEMCNYRAASKIAIYAHMRT 235
EKPF+C +C R+ A+ H+RT
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRT 25
Score = 24.3 bits (52), Expect = 6.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 184 RNFMCFACPYYCRYGSSMAIHLRTH 208
+ F C CP R S+M HLRTH
Sbjct: 2 KPFSCSLCPQRSRDFSAMTKHLRTH 26
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.98
Identities = 47/317 (14%), Positives = 99/317 (31%), Gaps = 67/317 (21%)
Query: 30 ARKMWTKLKKNHQNRNQKKMKSKTAK-Y-WTGGEEDVDKVEEEPPEPEPEEDE-VEDGEI 86
+++ L + QK ++ Y + + ++ E +P +E +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFL-----MSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 87 LDNEDDTKSQGSVETIDDDIEMVFAAEKKADPKRDMEKVRLR------KQLMAIE----E 136
L N++ ++ +V ++ + R + V + K +A++
Sbjct: 119 LYNDNQVFAKYNVSR----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 137 KIKAARHPLFSPDDQFFCIHCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCR 196
K++ D + F ++ C +L+ + L + N R+
Sbjct: 175 KVQCK------MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI- 227
Query: 197 YGSSMAIHLRTHTKEKPFA-C-----EMCNYRAA------SKIAIYAHMRTT---HIMPD 241
S+ LR K KP+ C + N +A KI + TT +
Sbjct: 228 --HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL-----TTRFKQVTDF 280
Query: 242 TSEERRYHCAF----CNFTSPTQWAINRHTKYTHMNTSG-P----TIQPECIKILWSFLS 292
S H + T ++ KY P T P + I+ +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSL--LLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 293 YFI-----WISVDVNRL 304
+ W V+ ++L
Sbjct: 339 DGLATWDNWKHVNCDKL 355
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 29.9 bits (66), Expect = 1.4
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 4/97 (4%)
Query: 61 EEDVDKVEEEPPEPEPEEDEVEDGEILDNEDDTKSQGSVETIDDDIEMVFAAEKKADPKR 120
EE +V E P E + ++ E + + + E E + D +
Sbjct: 97 EEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTE----KEVQPDVPK 152
Query: 121 DMEKVRLRKQLMAIEEKIKAARHPLFSPDDQFFCIHC 157
+ EK K++ + P DD
Sbjct: 153 NTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSV 189
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 29.5 bits (67), Expect = 1.5
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 42 QNRNQKKMKSKTAKYWTGGEEDVDKVE-EEPPEPEPEEDEV 81
+N + M SK + W+ ++ E P PE E ++
Sbjct: 16 ENLYFQSMMSKWMQEWSTETVAPHDLKLAERPVPEAGEHDI 56
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 29.4 bits (65), Expect = 1.6
Identities = 6/45 (13%), Positives = 18/45 (40%)
Query: 199 SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTS 243
+ T + + C +C+ S + + AH+ + + + +
Sbjct: 166 PARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMT 210
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3mhh_A 3m99_A
Length = 476
Score = 29.2 bits (65), Expect = 1.7
Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 17/113 (15%)
Query: 170 CKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEK--PFACEMCNYRAASKI 227
C C + FMC C + + S H +H+K+ F N
Sbjct: 51 CGTC----HEINSGATFMCLQCGFCGCWNHS---HFLSHSKQIGHIFGINSNNG------ 97
Query: 228 AIYAHMRTTHIMPDTSEERRYHCAFCN--FTSPTQWAINRHTKYTHMNTSGPT 278
++ +I + + T ++ R + + G T
Sbjct: 98 LLFCFKCEDYIGNIDLINDAILAKYWDDVCTKTMVPSMERRDGLSGLINMGST 150
Score = 26.8 bits (59), Expect = 9.1
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 152 FFCIHCN--GCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHT 209
F C+ C GC ++ L H K N CF C Y + +
Sbjct: 63 FMCLQCGFCGCWNHSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDLINDAILAKY 122
Query: 210 KE 211
+
Sbjct: 123 WD 124
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 26.0 bits (56), Expect = 1.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 212 KPFACEMCNYRAASKIAIYAHMRTTH 237
K + C+ C +R+A + H++T H
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 25.5 bits (55), Expect = 2.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 248 YHCAFCNFTSPTQWAINRHTKYTHMN 273
Y+C+ C+++S T+ + RH H N
Sbjct: 10 YYCSQCHYSSITKNCLKRHVIQKHSN 35
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 25.5 bits (55), Expect = 2.8
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 208 HTKEKPFACEMCNYRAASKIAIYAHMR 234
+ ++PF C +C +K H++
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 28.6 bits (64), Expect = 2.9
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 61 EEDVDKVEEEPPEPEPEEDEVEDGEILDNEDDTKSQGSVETIDDDIEMVFAAEKKADPKR 120
E E + E + E L E ++ V +++ + A+++ P +
Sbjct: 133 ETVEIVEAAEEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQPVEEIAQEQEKPTK 192
Query: 121 DMEKVRLRKQLMAIEEKIKAARHPLFSP---DDQFF 153
+ RL++ L+ +E + + LF DD F
Sbjct: 193 EGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLF 228
>3gkr_A FEMX; peptidoglycan, hexapeptide, transferase; HET: UDP UM0 UM1
UM2; 1.60A {Lactobacillus viridescens} PDB: 1ne9_A
1p4n_A* 1xix_A 1xf8_A 1xe4_A
Length = 336
Score = 28.2 bits (62), Expect = 3.3
Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 183 RRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDT 242
R Y+ R + F E ++ IA+ + ++ +
Sbjct: 206 RHGITHRPIEYFQRM-----QAAFDADTMRIFVAEREGKLLSTGIALKYGRKIWYMYAGS 260
Query: 243 SEERRYHCAFCNFTSPTQWAINRHTKYTHM 272
+ Y+ + + QWA++ +T +
Sbjct: 261 MDGNTYYAPYAVQSEMIQWALDTNTDLYDL 290
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 28.1 bits (63), Expect = 4.0
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 58 TGGEEDVDKVE-EEPPEPEPEEDEV 81
G +DV + E + +EV
Sbjct: 12 HGEPKDVLFTQSFEIDDDNLAPNEV 36
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 28.0 bits (61), Expect = 4.1
Identities = 18/150 (12%), Positives = 32/150 (21%), Gaps = 12/150 (8%)
Query: 145 LFSPDDQFFCIHCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIH 204
D C+ C + L C C C C+ + +
Sbjct: 40 SAVVFDSLINFVCHTCFKRQEKLHRCGQC------------KFAHYCDRTCQKDAWLNHK 87
Query: 205 LRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAIN 264
+K N R A++I T + +
Sbjct: 88 NECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDDLQNHVEHFGEEEQKEL 147
Query: 265 RHTKYTHMNTSGPTIQPECIKILWSFLSYF 294
R T + P Q ++ +
Sbjct: 148 RVDVDTFLQYWPPQSQQFSMQYISHIFGVI 177
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus
horikoshii OT3, structural genomics; HET: NAD; 2.05A
{Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 27.9 bits (63), Expect = 4.3
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 47 KKMKSKTAKYWTGGEEDVDKVEEEPPEPEPEEDEV 81
+KM A T ++ E P+P EV
Sbjct: 3 EKMV---AIMKTKPGYGA-ELVEVD-VPKPGPGEV 32
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A
{Aromatoleum aromaticum}
Length = 352
Score = 28.0 bits (62), Expect = 4.4
Identities = 32/188 (17%), Positives = 51/188 (27%), Gaps = 50/188 (26%)
Query: 63 DVDKVEEEPPEPEPEEDEVEDGEILDNEDDTKSQGSV----ETIDDDIEMVFAAEKK--- 115
+ V P + P + E + G L E ++ + + + VF K
Sbjct: 52 RWNNVTTYPGKGYPRDYERKGGGFLRGEPQPGVLPTLIDSGDDFQFNHKEVFYEGKGQTV 111
Query: 116 -ADPKRDMEKVRLRKQLMAIEEKIKAARHPLFSPDDQFFCIHCN--GCV-------LYAD 165
P E++ F C HC C+ +Y
Sbjct: 112 HFHPTSKSTGKDPAWGYNWDEDQGGGKWPNPFFFYLARMCNHCTNPACLAACPTGAIYKR 171
Query: 166 ------LLDH-----CKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPF 214
L+D + C+ ACPY Y + + T EK
Sbjct: 172 EDNGIVLVDQERCKGHRHCVE--------------ACPYKAIY-----FNPVSQTSEK-- 210
Query: 215 ACEMCNYR 222
C +C R
Sbjct: 211 -CILCYPR 217
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB
tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A
{Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Length = 416
Score = 27.8 bits (61), Expect = 5.2
Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 11/115 (9%)
Query: 40 NHQNRNQKKMKSKTAKYWTGGEEDVDKVEEEPPEPEPEEDEVEDGEILDNEDDTKSQGSV 99
E+ + + E E E + + N ++
Sbjct: 56 RTWGDAGAAAGGGIPSKGVNFAEEPMRSDSENGEEEEAAEAGAFNAPVINRFTRRASVCA 115
Query: 100 ETIDDDIEMVFAAEKKADPKRDMEKVRLRKQLMAIEEKIKAARHPLFS--PDDQF 152
E + D E A + PK D ++ RL++ LF +Q
Sbjct: 116 EAYNPDEEEDDAESRIIHPKTDDQRNRLQEACK---------DILLFKNLDPEQM 161
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 27.6 bits (60), Expect = 5.3
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 55 KYWTGGEEDVDKVEEEPPEPEPEEDEVEDGEILDNEDDTKSQGSVETIDDDIEMVFAAEK 114
++TG + + E+E E E++E +D L+++D ++ + + A E
Sbjct: 358 DWFTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQ---APEC 414
Query: 115 K 115
K
Sbjct: 415 K 415
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 24.6 bits (54), Expect = 5.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 184 RNFMCFACPYYCRYGSSMAIHLRTHTKEK 212
R+F+C C + H R+HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 27.9 bits (61), Expect = 6.2
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 209 TKEKPFACEMCNYRAASKIAIYAHMRTTH 237
+ C +CN R ++ A+ H+R+ H
Sbjct: 112 VNPSSYVCNVCNARFSTMSALSEHLRSDH 140
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.0 bits (56), Expect = 6.7
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 189 FACPYYCRYGSSMAIHLRTH---TKEKPFACEMCNYRAASKIAIYAHMRTTH 237
+CP G L+ H K++ F C C + S + H+ H
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate),
aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A
{Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A*
1kmn_A* 2el9_A*
Length = 423
Score = 27.1 bits (61), Expect = 7.6
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 163 YADLLDHCKLCLRRKRKNPMR 183
+ + L + C RR NP+R
Sbjct: 187 HKEKL--DEDCKRRMYTNPLR 205
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold,
ubiquitin ligase; 1.97A {Homo sapiens}
Length = 118
Score = 26.1 bits (58), Expect = 7.9
Identities = 3/30 (10%), Positives = 8/30 (26%)
Query: 265 RHTKYTHMNTSGPTIQPECIKILWSFLSYF 294
T + + + + WS +
Sbjct: 11 SFTSFNDESGENAEKLLQFKRWFWSIVEKM 40
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 26.6 bits (59), Expect = 8.7
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 61 EEDVDKVEEEPPEPEPEEDEV--EDGEILDNEDDTKSQGSVETIDDDIEMVFAAEKKADP 118
EE +V+ E+ E E + D + + E +D+ A ++
Sbjct: 179 EELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDN------AGTDSED 232
Query: 119 KRDME 123
D +
Sbjct: 233 NSDAQ 237
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP
+ L-histidine tRNA(His)-> AMP + PPI +
L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Length = 421
Score = 27.1 bits (61), Expect = 9.0
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 163 YADLLDHCKLCLRRKRKNPMR 183
+ + L + R +NPMR
Sbjct: 186 HREAL--SEDSKERLEENPMR 204
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural
genomics, southeast collaboratory for structural
genomics, secsg; 2.30A {Pyrococcus furiosus}
Length = 395
Score = 27.1 bits (61), Expect = 9.0
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 14/48 (29%)
Query: 40 NHQNRNQKKMKSKTAKYWTGGEEDVDKVEEEPPEPEPEEDEVEDGEIL 87
H+ ++ ++ K +K +++ E E+ED EI
Sbjct: 262 VHERLIKRIVE----KI--------EKNKKD--IFTYETYELEDAEIG 295
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 26.8 bits (59), Expect = 9.3
Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 16/110 (14%)
Query: 16 TNPKLKKVNYPIIVARK-------MWTKLKKNHQNRNQKKMKSKTAKYWTGGEEDVDKVE 68
+ + V+ I + +W L R +++ D
Sbjct: 149 LDSPSEFVDVAIPCNNRGKHSIGLIWYLLA-----REVLRLRGALVDRTQPWSIMPDLYF 203
Query: 69 EEPPEPEPEEDEVEDGEILDNEDDTKSQGSVETIDDDIEMVFAAEKKADP 118
+PEE E + E E+ + + E ++ E AE+ AD
Sbjct: 204 YR----DPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEENADN 249
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 26.8 bits (60), Expect = 9.3
Identities = 6/21 (28%), Positives = 7/21 (33%), Gaps = 2/21 (9%)
Query: 163 YADLLDHCKLCLRRKRKNPMR 183
C C R +PMR
Sbjct: 186 VIHEF--CSDCQSRLHTDPMR 204
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for
infectious disease, S aminoacylation, tRNA activation,
charged tRNA; HET: HIS; 2.65A {Burkholderia
thailandensis}
Length = 467
Score = 26.9 bits (60), Expect = 9.8
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 163 YADLLDHCKLCLRRKRKNPMR 183
+AD L RR NP+R
Sbjct: 215 HADKL--DDDAQRRLYTNPLR 233
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.423
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,770,644
Number of extensions: 284797
Number of successful extensions: 1385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1316
Number of HSP's successfully gapped: 380
Length of query: 304
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 211
Effective length of database: 4,105,140
Effective search space: 866184540
Effective search space used: 866184540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)