RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3485
(304 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 40.7 bits (96), Expect = 4e-06
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 206 RTHTKEKPFACEMCNYRAASKIAIYAHMRTTH 237
RTH+ EKP+ C +C+ R + H+ H
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH 32
Score = 22.6 bits (49), Expect = 9.6
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 186 FMCFACPYYCRYGSSMAIH-LRTHTKE 211
+ C+ C +M +H L+ HT+
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTEN 35
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 40.5 bits (95), Expect = 5e-06
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIM 239
R T KPF C C+ + + H + H++
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK-RHML 36
Score = 23.5 bits (51), Expect = 6.1
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 184 RNFMCFACPYYCRYGSSMAIHLRTHT 209
+ F C C +A+H + H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRHM 35
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 39.4 bits (92), Expect = 1e-05
Identities = 5/34 (14%), Positives = 11/34 (32%)
Query: 202 AIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
+ + + C+ C + + H RT
Sbjct: 1 GRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT 34
Score = 29.0 bits (65), Expect = 0.072
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 175 RRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKE 211
R + + RR + C C + S ++ H RTHT E
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 38.5 bits (90), Expect = 2e-05
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 206 RTHTKEKPFACEMCNYRAASKIAIYAHMRTTH 237
RTHT EKP+AC C+ K + H + H
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 27.7 bits (62), Expect = 0.17
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 184 RNFMCFACPYYCRYGSSMAIHLRTHTKEK 212
+ + C C R + +H + +
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 36.6 bits (85), Expect = 1e-04
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 185 NFMC--FACPYYCRYGSSMAIHLRTHTKEKPFACE 217
+F C AC + + H++ H+ + + CE
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 35.7 bits (83), Expect = 2e-04
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 186 FMCFACPYYCRYGSSMAIHLR-THTKEKPFACEM 218
++C +C + H++ HT E+P C++
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 35.7 bits (83), Expect = 2e-04
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 209 TKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHC 250
+ KP+ C+ C + + H++ H + ER + C
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVH-----TSERPHKC 37
Score = 23.4 bits (51), Expect = 5.6
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 243 SEERRYHCAFCNFTSPTQWAINRHTKYTH 271
S + Y C C +N H K H
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 35.3 bits (82), Expect = 3e-04
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 208 HTKEKPFACEMCNYRAASKIAIYAHMRT 235
H+ EKP+ C C + + H R
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRV 29
Score = 28.4 bits (64), Expect = 0.085
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 186 FMCFACPYYCRYGSSMAIHLRTHTKE 211
+ C C S + H R HT E
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTGE 33
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 32.7 bits (75), Expect = 0.003
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 186 FMCFACPYYCRYGSSMAIHLRTHTKEK 212
F C CP ++ H++TH +K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 27.7 bits (62), Expect = 0.13
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 212 KPFACEMCNYRAASKIAIYAHMRT 235
K FAC C R + H++T
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKT 24
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 32.4 bits (74), Expect = 0.003
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 208 HTKEKPFACEMCNYRAASKIAIYAHMRT 235
+ ++PF C +C +K H++
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV 29
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 31.6 bits (71), Expect = 0.007
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 184 RNFMCFACPYYCRYGSSMAIHLRTHT 209
R F C CPY R S + +HLR+HT
Sbjct: 2 RPFKCQICPYASRNSSQLTVHLRSHT 27
Score = 27.7 bits (61), Expect = 0.15
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 211 EKPFACEMCNYRAASKIAIYAHMRT 235
E+PF C++C Y + + + H+R+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRS 25
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 29.9 bits (68), Expect = 0.025
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 184 RNFMCFACPYYCRYGSSMAIHLRTHTKEK 212
R+F+C C + H R+HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.4 bits (59), Expect = 0.44
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 212 KPFACEMCNYRAASKIAIYAHMRT 235
+ F CE+C A + + H R+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 30.4 bits (68), Expect = 0.030
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 191 CPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
C + S H+ H +P+ C +C + K + HM+
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 52
Score = 28.5 bits (63), Expect = 0.14
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 8/61 (13%)
Query: 211 EKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYT 270
+K + C+ C K HM + Y C C + + H K
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLR------PYGCGVCGKKFKMKHHLVGHMK-I 52
Query: 271 H 271
H
Sbjct: 53 H 53
Score = 24.6 bits (53), Expect = 3.5
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 175 RRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTH 208
R + R + C C + + H++ H
Sbjct: 20 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the
C-terminal domain {Thermus aquaticus [TaxId: 271]}
Length = 224
Score = 31.7 bits (71), Expect = 0.072
Identities = 16/157 (10%), Positives = 38/157 (24%), Gaps = 7/157 (4%)
Query: 137 KIKAARHPLFSPDDQF----FCIHCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACP 192
+I+A RHP+ +F + ++ + LR+ + F
Sbjct: 11 QIRAGRHPVVERRTEFVPNDLEMAHELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA 70
Query: 193 YYCRYGSSMAIHLRTHTKEKPFACE---MCNYRAASKIAIYAHMRTTHIMPDTSEERRYH 249
I+ R + + M + I A + ++ +
Sbjct: 71 EEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSL 130
Query: 250 CAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKI 286
T+ + R ++
Sbjct: 131 DGVAIATAVAEALHERRAYTLFATHYFELTALGLPRL 167
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 28.0 bits (63), Expect = 0.13
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 211 EKPFACEMCNYRAASKIAIYAHMRT 235
+KPF C +C + + H+RT
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRT 25
Score = 24.9 bits (55), Expect = 1.3
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 186 FMCFACPYYCRYGSSMAIHLRTHT 209
F C C + H+RTHT
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHT 27
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 26.9 bits (60), Expect = 0.33
Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 184 RNFMCFA--CPYYCRYGSSMAIHLRTHTKEK 212
R FMC C + H RTHT EK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 29.3 bits (64), Expect = 0.33
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 47 KKMKSKTAKYWTGGEEDVDKVEEEPPEPEPEEDEV 81
K M++ + + G +V K+ + P P++ +V
Sbjct: 1 KLMRA--VRVFEFGGPEVLKLRSDIAVPIPKDHQV 33
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 27.2 bits (60), Expect = 0.39
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 199 SSMAIHLRTHTKEKPFACE--MCNYRAASKIAIYAHMRT 235
S+ +++ +K F C C + I +H++T
Sbjct: 5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQT 42
Score = 26.0 bits (57), Expect = 0.89
Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 174 LRRKRKNPMRRNFMCFACPYYCRY--GSSMAIHLRTHTKEK 212
+ + K + F C + ++ H++TH +++
Sbjct: 7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse
(Equus caballus) [TaxId: 9796]}
Length = 198
Score = 29.4 bits (65), Expect = 0.42
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 47 KKMKSKTAKYWTGGEEDVDKVEEEPPEPEPEEDEV 81
K +K K A W + EE P+ EV
Sbjct: 5 KVIKCKAAVLWEEKK---PFSIEEVEVAPPKAHEV 36
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 234
Score = 29.4 bits (65), Expect = 0.49
Identities = 16/173 (9%), Positives = 37/173 (21%), Gaps = 19/173 (10%)
Query: 137 KIKAARHPL--------FSPDDQFFCIHCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMC 188
+I RHP+ F + ++ + +R+ +
Sbjct: 13 RITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS 72
Query: 189 FACPYYCRYGSSMAIHLRTHTKEKPFACE---MCNYRAASKIAIYAHMRTTHIMPDTSEE 245
+ G I R + + M + I A + +M +
Sbjct: 73 YVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEI--- 129
Query: 246 RRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWIS 298
+ A + T+ L ++
Sbjct: 130 ----GRGTSTYDGLSLA-WACAENLANKIKALTLFATHYFELTQLPEKMEGVA 177
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 26.3 bits (57), Expect = 0.53
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 212 KPFACEMCNYRAASKIAIYAHMRTTH 237
K + C+ C +R+A + H++T H
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse
(Mus musculus), class II [TaxId: 10090]}
Length = 202
Score = 27.9 bits (61), Expect = 1.1
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 47 KKMKSKTAKYWTGGEEDVDKVEEEPPEPEPEEDEV 81
K +K K A W G EE P+ EV
Sbjct: 5 KVIKCKAAIAWKTGS---PLCIEEIEVSPPKACEV 36
>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod
(Gadus callarias) [TaxId: 8053]}
Length = 199
Score = 28.0 bits (61), Expect = 1.3
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 47 KKMKSKTAKYWTGGEEDVDKVEEEPPEPEPEEDEV 81
K +K K A W + V EE P +E+
Sbjct: 5 KVIKCKAAVAWEANK---PLVIEEIEVDVPHANEI 36
>d1l3la2 d.110.5.1 (A:2-169) Transcription factor TraR, N-terminal
domain {Agrobacterium tumefaciens [TaxId: 358]}
Length = 168
Score = 27.3 bits (60), Expect = 1.4
Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 9/80 (11%)
Query: 175 RRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHT---------KEKPFACEMCNYRAAS 225
R + R F A + R G ++ I K + AA+
Sbjct: 89 ERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFMSMFTMASDKPVIDLDREIDAVAAA 148
Query: 226 KIAIYAHMRTTHIMPDTSEE 245
H R + + + E
Sbjct: 149 ATIGQIHARISFLRTTPTAE 168
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 27.9 bits (60), Expect = 1.5
Identities = 14/172 (8%), Positives = 30/172 (17%), Gaps = 13/172 (7%)
Query: 146 FSPDDQFFCIHCNGCVLYADLLDHCKLCLRRKRK-------------NPMRRNFMCFACP 192
S + GCV D+ + P +
Sbjct: 59 ISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA 118
Query: 193 YYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF 252
A R + A + + + + +
Sbjct: 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ 178
Query: 253 CNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVNRL 304
+ I+ T + T G + + + L
Sbjct: 179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL 230
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 27.9 bits (61), Expect = 1.5
Identities = 13/113 (11%), Positives = 28/113 (24%), Gaps = 6/113 (5%)
Query: 158 NGCVLYADLL--DHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFA 215
+ + + + K + A + +
Sbjct: 78 CASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERV 137
Query: 216 CEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTS--PTQWAINRH 266
+ +A A+ A M + DT R + C PT ++R+
Sbjct: 138 PGGSSGGSA--AAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRY 188
>d1xl7a2 c.43.1.3 (A:393-610) Peroxisomal carnitine
O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
10090]}
Length = 218
Score = 27.6 bits (61), Expect = 1.8
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 17/86 (19%)
Query: 201 MAIHL---RTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTS 257
+A+ L R H E R + H RT + T E R+ + + ++
Sbjct: 30 LALQLAYYRLH-GRPGCCYETAMTR------YFYHGRTETVRSCTVEAVRWCQSMQDPSA 82
Query: 258 PT-------QWAINRHTKYTHMNTSG 276
A +H K + G
Sbjct: 83 SLLERQQKMLEAFAKHNKMMKDCSHG 108
>d1l8ca_ g.53.1.1 (A:) CREB-binding transcriptional adaptor protein
CBP (p300) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 26.4 bits (58), Expect = 1.9
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 166 LLDHCKLCLRRKRKNPMRRNFMCFACPY-YCRYGSSMAIHLRTHTKEKPFACEMCN 220
LL H C RR++ N R C +CR ++ H+ K C
Sbjct: 15 LLLHAHKCQRREQANGEVRA-----CSLPHCRTMKNVLNHMTHCQAGKACQVAHCA 65
>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human
(Homo sapiens), different isozymes [TaxId: 9606]}
Length = 197
Score = 27.1 bits (59), Expect = 2.2
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 47 KKMKSKTAKYWTGGEEDVDKVEEEPPEPEPEEDEV 81
+ +K K A W G+ EE P+ EV
Sbjct: 3 EVIKCKAAVAWEAGK---PLSIEEIEVAPPKAHEV 34
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 24.3 bits (52), Expect = 2.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 212 KPFACEMCNYRAASKIAIYAHMR 234
KP+ C+ C+Y AA ++ H+R
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLR 24
>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase
(ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}
Length = 431
Score = 27.3 bits (59), Expect = 2.5
Identities = 9/152 (5%), Positives = 29/152 (19%), Gaps = 3/152 (1%)
Query: 151 QFFCIHCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTK 210
++ + + + + +K
Sbjct: 212 YLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSK 271
Query: 211 EKPFACEMCNYRAASKIAIYAHMR---TTHIMPDTSEERRYHCAFCNFTSPTQWAINRHT 267
+ ++ + A + ++ ++ + A N
Sbjct: 272 DLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKR 331
Query: 268 KYTHMNTSGPTIQPECIKILWSFLSYFIWISV 299
+Q I L F W+ +
Sbjct: 332 LKQRQKKLVSGLQKSGISCLNGNAGLFCWVDM 363
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 24.2 bits (52), Expect = 3.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 211 EKPFACEMCNYRAASKIAIYAHMRT 235
EKP++C +C R K + H+R+
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRS 25
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 23.4 bits (50), Expect = 4.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 248 YHCAFCNFTSPTQWAINRHTK 268
YHC +CNF+ T+ + +H K
Sbjct: 2 YHCTYCNFSFKTKGNLTKHMK 22
>d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP
{Escherichia coli [TaxId: 562]}
Length = 369
Score = 26.3 bits (56), Expect = 4.9
Identities = 26/267 (9%), Positives = 65/267 (24%), Gaps = 16/267 (5%)
Query: 48 KMKSKTAKYWTGGEEDVDKVEEEPPEPEPEED---EVEDGEILDNEDDTKSQGS----VE 100
K++ W G++ + + E + E + D VE + L+ + + +
Sbjct: 1 KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTDPKVTVEHPDKLEEKFPQVAATGDGPDII 60
Query: 101 TIDDDIEMVFAAEKKADPKRDMEKVRLR-----KQLMAIEEKIKAARHPLFSPDDQFFCI 155
D +A + + + + K+ A + + +
Sbjct: 61 FWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD 120
Query: 156 HCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFA 215
+ + L+ K K+ + N + + K
Sbjct: 121 LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKD 180
Query: 216 CEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQ----WAINRHTKYTH 271
+ N A + + + M ++ AF + WA +
Sbjct: 181 VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV 240
Query: 272 MNTSGPTIQPECIKILWSFLSYFIWIS 298
+ I+
Sbjct: 241 NYGVTVLPTFKGQPSKPFVGVLSAGIN 267
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 23.4 bits (51), Expect = 5.4
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 9/29 (31%)
Query: 192 PYYCRYG---------SSMAIHLRTHTKE 211
PY C + + H ++H ++
Sbjct: 3 PYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 121
Score = 25.2 bits (55), Expect = 6.2
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 241 DTSEERRYHCAFCNFTSPTQWAINRHTKYTH 271
+ C FC+ + H K H
Sbjct: 9 PAHGRQHTPCLFCDRLFASAEETFSHCKLEH 39
>d3bzna1 d.161.1.1 (A:2-429) Menaquinone-specific isochorismate
synthase MenF {Escherichia coli [TaxId: 562]}
Length = 428
Score = 25.9 bits (56), Expect = 6.5
Identities = 19/170 (11%), Positives = 39/170 (22%), Gaps = 13/170 (7%)
Query: 135 EEKIKAARHPLFSPDDQFFCIHCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYY 194
+ I+ A + + + + +A ++ + +R N +F
Sbjct: 172 TQLIELATKTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLNLNCYHFYMAFDGEN 231
Query: 195 CRYGSSMAIHLRTHTKEK---PFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA 251
GSS R K A + N + + E
Sbjct: 232 AFLGSSPERLWRRRDKALRTEALAGTVANNPDDKQAQQL-GEWLMADDKNQRENMLVVED 290
Query: 252 FCNFTS---------PTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLS 292
C P Q R ++ + + + L
Sbjct: 291 ICQRLQADTQTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVICLHQLQP 340
>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase
{Yeast (Candida tropicalis) [TaxId: 5482]}
Length = 175
Score = 25.5 bits (54), Expect = 7.7
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 49 MKSKTAKYW-TGGEEDVDKVEEEP-PEPEPEEDEV 81
+ ++ Y G +DV + + +EV
Sbjct: 2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEV 36
>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL
{Escherichia coli [TaxId: 562]}
Length = 382
Score = 25.5 bits (54), Expect = 8.6
Identities = 9/148 (6%), Positives = 33/148 (22%)
Query: 152 FFCIHCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKE 211
+ + A + ++ + + +
Sbjct: 175 VWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTY 234
Query: 212 KPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTH 271
++ A + I+ ++ + + A P +
Sbjct: 235 HMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQK 294
Query: 272 MNTSGPTIQPECIKILWSFLSYFIWISV 299
+ + ++IL +YF+ +
Sbjct: 295 RDILVNALNESRLEILPCEGTYFLLVDY 322
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 22.7 bits (49), Expect = 9.0
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 9/29 (31%)
Query: 192 PYYCRYG---------SSMAIHLRTHTKE 211
P+ C + ++ HLR+HT E
Sbjct: 2 PHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.423
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,214,653
Number of extensions: 59486
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 87
Length of query: 304
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,240,546
Effective search space: 271679574
Effective search space used: 271679574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)