BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3486
(222 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94899|CSN2_DROME COP9 signalosome complex subunit 2 OS=Drosophila melanogaster
GN=alien PE=1 SV=2
Length = 444
Score = 177 bits (449), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/98 (86%), Positives = 90/98 (91%)
Query: 122 SNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA 181
NY EMM RYKQLL YIKSAVTRN+SEKSINSILDYISTSKNM LLQ+FYETTL+AL+DA
Sbjct: 84 CNYDEMMVRYKQLLTYIKSAVTRNHSEKSINSILDYISTSKNMALLQNFYETTLDALRDA 143
Query: 182 KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 219
KNDRLWFKTNTKLGKLYFDR DF KL +ILKQLHQSCQ
Sbjct: 144 KNDRLWFKTNTKLGKLYFDRSDFTKLQKILKQLHQSCQ 181
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/48 (75%), Positives = 40/48 (83%)
Query: 1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDV 48
M D FIREHIEDLLRNIRTQVLIKLI+PY I IPFI+ LNIE ++V
Sbjct: 339 MADQFIREHIEDLLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEV 386
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 50/68 (73%), Gaps = 3/68 (4%)
Query: 56 YTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTV 115
+ R HI + R NI T VLIKLI+PY I IPFI+ LNIE ++VESLLVS ILD+T+
Sbjct: 343 FIREHIEDLLR--NIRTQ-VLIKLIRPYKNIAIPFIANALNIEPAEVESLLVSCILDDTI 399
Query: 116 RGRIDQSN 123
+GRIDQ N
Sbjct: 400 KGRIDQVN 407
>sp|Q6IQT4|CSN2_DANRE COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2
SV=1
Length = 443
Score = 174 bits (441), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/98 (83%), Positives = 92/98 (93%)
Query: 122 SNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA 181
+N+ EMM+RYKQLL YI+SAVTRNYSEKSINSILDYISTSK M+LLQ+FYETTLEALKDA
Sbjct: 83 TNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQEFYETTLEALKDA 142
Query: 182 KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 219
KNDRLWFKTNTKLGKLY +RE+F KL +IL+QLHQSCQ
Sbjct: 143 KNDRLWFKTNTKLGKLYLEREEFGKLQKILRQLHQSCQ 180
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/48 (87%), Positives = 47/48 (97%)
Query: 1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDV 48
MDDPFIREHIE+LLRNIRTQVLIKLIKPYTRIHIPFIS++LNI+ +DV
Sbjct: 338 MDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADV 385
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 3 DPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIP 62
+PF + + + + L+ Y I + L S+++ P+ R HI
Sbjct: 292 NPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDD---PFIREHIE 348
Query: 63 FISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQS 122
+ R NI T VLIKLIKPYTRIHIPFIS++LNI+ +DVESLLV ILDNT+ GRIDQ
Sbjct: 349 ELLR--NIRTQ-VLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTINGRIDQV 405
Query: 123 N 123
N
Sbjct: 406 N 406
>sp|Q6IR75|CSN2_XENLA COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis
GN=csn2 PE=2 SV=1
Length = 441
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/98 (82%), Positives = 91/98 (92%)
Query: 122 SNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA 181
NY EMM+RYKQLL YI+SAVTRNYSEKSINSILDYISTSK M+LLQ+FYETTL+ALKDA
Sbjct: 81 GNYPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQEFYETTLDALKDA 140
Query: 182 KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 219
KNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSCQ
Sbjct: 141 KNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQ 178
Score = 94.0 bits (232), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 42/48 (87%), Positives = 47/48 (97%)
Query: 1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDV 48
MDDPFIREHIE+LLRNIRTQVLIKLIKPYTRIHIPFIS++LNI+ +DV
Sbjct: 336 MDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADV 383
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 3 DPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIP 62
+PF + + + + L+ Y I + L S+++ P+ R HI
Sbjct: 290 NPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDD---PFIREHIE 346
Query: 63 FISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQS 122
+ R NI T VLIKLIKPYTRIHIPFIS++LNI+ +DVESLLV ILDNT+ GRIDQ
Sbjct: 347 ELLR--NIRTQ-VLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQV 403
Query: 123 N 123
N
Sbjct: 404 N 404
>sp|P61203|CSN2_RAT COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2
PE=2 SV=1
Length = 443
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/98 (82%), Positives = 92/98 (93%)
Query: 122 SNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA 181
+N+ EMM+RYKQLL YI+SAVTRNYSEKSINSILDYISTSK M+LLQ+FYETTLEALKDA
Sbjct: 83 TNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQEFYETTLEALKDA 142
Query: 182 KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 219
KNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSCQ
Sbjct: 143 KNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQ 180
Score = 94.0 bits (232), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 42/48 (87%), Positives = 47/48 (97%)
Query: 1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDV 48
MDDPFIREHIE+LLRNIRTQVLIKLIKPYTRIHIPFIS++LNI+ +DV
Sbjct: 338 MDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADV 385
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 54/69 (78%), Gaps = 3/69 (4%)
Query: 55 PYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNT 114
P+ R HI + R NI T VLIKLIKPYTRIHIPFIS++LNI+ +DVESLLV ILDNT
Sbjct: 341 PFIREHIEELLR--NIRTQ-VLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNT 397
Query: 115 VRGRIDQSN 123
+ GRIDQ N
Sbjct: 398 IHGRIDQVN 406
>sp|P61202|CSN2_MOUSE COP9 signalosome complex subunit 2 OS=Mus musculus GN=Cops2 PE=1
SV=1
Length = 443
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/98 (82%), Positives = 92/98 (93%)
Query: 122 SNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA 181
+N+ EMM+RYKQLL YI+SAVTRNYSEKSINSILDYISTSK M+LLQ+FYETTLEALKDA
Sbjct: 83 TNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQEFYETTLEALKDA 142
Query: 182 KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 219
KNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSCQ
Sbjct: 143 KNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQ 180
Score = 94.0 bits (232), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 42/48 (87%), Positives = 47/48 (97%)
Query: 1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDV 48
MDDPFIREHIE+LLRNIRTQVLIKLIKPYTRIHIPFIS++LNI+ +DV
Sbjct: 338 MDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADV 385
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 54/69 (78%), Gaps = 3/69 (4%)
Query: 55 PYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNT 114
P+ R HI + R NI T VLIKLIKPYTRIHIPFIS++LNI+ +DVESLLV ILDNT
Sbjct: 341 PFIREHIEELLR--NIRTQ-VLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNT 397
Query: 115 VRGRIDQSN 123
+ GRIDQ N
Sbjct: 398 IHGRIDQVN 406
>sp|P61201|CSN2_HUMAN COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1
SV=1
Length = 443
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/98 (82%), Positives = 92/98 (93%)
Query: 122 SNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA 181
+N+ EMM+RYKQLL YI+SAVTRNYSEKSINSILDYISTSK M+LLQ+FYETTLEALKDA
Sbjct: 83 TNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQEFYETTLEALKDA 142
Query: 182 KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 219
KNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSCQ
Sbjct: 143 KNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQ 180
Score = 94.0 bits (232), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 42/48 (87%), Positives = 47/48 (97%)
Query: 1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDV 48
MDDPFIREHIE+LLRNIRTQVLIKLIKPYTRIHIPFIS++LNI+ +DV
Sbjct: 338 MDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADV 385
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 54/69 (78%), Gaps = 3/69 (4%)
Query: 55 PYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNT 114
P+ R HI + R NI T VLIKLIKPYTRIHIPFIS++LNI+ +DVESLLV ILDNT
Sbjct: 341 PFIREHIEELLR--NIRTQ-VLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNT 397
Query: 115 VRGRIDQSN 123
+ GRIDQ N
Sbjct: 398 IHGRIDQVN 406
>sp|O01422|CSN2_CAEEL COP9 signalosome complex subunit 2 OS=Caenorhabditis elegans
GN=csn-2 PE=1 SV=2
Length = 495
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 86/101 (85%)
Query: 119 IDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEAL 178
Q+ ++M+ Y+QLL YIKSAVT+NYSEKSIN+ILDYISTS+ M+LLQ FYETTL+AL
Sbjct: 77 FGQNRLEKMLEYYRQLLTYIKSAVTKNYSEKSINAILDYISTSRQMDLLQHFYETTLDAL 136
Query: 179 KDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 219
KDAKN+RLWFKTNTKLGKL+FD +F KL +I+KQL SC+
Sbjct: 137 KDAKNERLWFKTNTKLGKLFFDLHEFTKLEKIVKQLKVSCK 177
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 41/53 (77%)
Query: 1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLI 53
M DPFIREH E+L+ NIRTQVL++LI+PYT + I ++S++L + +V+ L+
Sbjct: 338 MADPFIREHTEELMNNIRTQVLLRLIRPYTNVRISYLSQKLKVSQKEVIHLLV 390
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 52 LIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLIL 111
+ P+ R H + NI T VL++LI+PYT + I ++S++L + +V LLV IL
Sbjct: 338 MADPFIREHTEELMN--NIRTQ-VLLRLIRPYTNVRISYLSQKLKVSQKEVIHLLVDAIL 394
Query: 112 DNTVRGRI-DQSNYKEMMSRYKQLLLYIKSAVTRNYSEKS 150
D+ + +I ++S EM K+++ + S V N ++
Sbjct: 395 DDGLEAKINEESGMIEMPKNKKKMM--VTSLVVPNAGDQG 432
>sp|Q8W207|CSN2_ARATH COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2
PE=1 SV=1
Length = 439
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 82/100 (82%), Gaps = 2/100 (2%)
Query: 122 SNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIS--TSKNMELLQDFYETTLEALK 179
YKEMM Y ++L YIKSAVTRNYSEK IN+I+D++S S+N LLQ+FY+TTL+AL+
Sbjct: 77 GKYKEMMEAYTEMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNTGLLQEFYQTTLKALE 136
Query: 180 DAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 219
+AKN+RLWFKTN KL ++FD ++ ++++ILK+LH+SCQ
Sbjct: 137 EAKNERLWFKTNLKLCNIWFDIGEYRRMTKILKELHKSCQ 176
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 47/56 (83%), Gaps = 3/56 (5%)
Query: 1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDV---LIKLI 53
MDDPFIR ++EDLL+ +RTQVL+KLIKPYT+I IPFIS++LN+ +DV L+ LI
Sbjct: 334 MDDPFIRNYMEDLLKKVRTQVLLKLIKPYTKIGIPFISKELNVPETDVTELLVSLI 389
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 41/51 (80%)
Query: 73 SDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123
+ VL+KLIKPYT+I IPFIS++LN+ +DV LLVSLILD+ + G ID+ N
Sbjct: 352 TQVLLKLIKPYTKIGIPFISKELNVPETDVTELLVSLILDSRIDGHIDEMN 402
>sp|Q5B3U7|CSN2_EMENI COP9 signalosome complex subunit 2 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnB PE=1 SV=2
Length = 506
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 72/100 (72%), Gaps = 4/100 (4%)
Query: 124 YKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS----KNMELLQDFYETTLEALK 179
Y + + Y++LL Y+KSAVTRNYSEKSIN++LDYI K + +++FY TL + +
Sbjct: 86 YSDAVEHYRELLTYVKSAVTRNYSEKSINNMLDYIEKGSDDEKAYQCMEEFYSLTLNSFQ 145
Query: 180 DAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 219
+ N+RLW KTN KL +L+ +R ++ +LS+ +++LH++CQ
Sbjct: 146 NTNNERLWLKTNIKLARLWLERREYGQLSKKVRELHRACQ 185
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Query: 3 DPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNI---ETSDVLIKLI 53
DPFI E+I+++ RN+RT+ ++KLI PYTR + FIS+ + I E D+L LI
Sbjct: 344 DPFIAENIDEVSRNMRTKAILKLIAPYTRFTLSFISKHIKISVTEAQDILSFLI 397
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 3 DPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIP 62
+PF + + + R + L+ + R I L+ + DVL P+ +I
Sbjct: 297 NPFHSQETKPYKTDPRISAMTDLVDAFQRDDIHAYEEVLS-KNPDVLAD---PFIAENID 352
Query: 63 FISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQS 122
+SR + + ++KLI PYTR + FIS+ + I ++ + +L LILD + +IDQ
Sbjct: 353 EVSRNMRTK---AILKLIAPYTRFTLSFISKHIKISVTEAQDILSFLILDKKLNAKIDQE 409
Query: 123 N 123
+
Sbjct: 410 S 410
>sp|Q7SI58|CSN2_NEUCR COP9 signalosome complex subunit 2 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-2 PE=1 SV=1
Length = 490
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 70/100 (70%), Gaps = 4/100 (4%)
Query: 124 YKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTS----KNMELLQDFYETTLEALK 179
Y+E Y++LL Y+KSAVTRNYSEKSI+++L+YI K ++ ++ FY TL+ +
Sbjct: 84 YQEATEHYEELLTYVKSAVTRNYSEKSIDNMLNYIEKGYDDPKAVQCIEKFYSLTLQCFQ 143
Query: 180 DAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 219
N+RLW KTN KL +L DR+D++ ++R L++LH +C+
Sbjct: 144 STNNERLWLKTNIKLARLLLDRKDYHAVARKLRELHNACR 183
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 36/47 (76%)
Query: 3 DPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVL 49
DPFI E+I+++ RN+RT+ ++KLI PYTR+ I +++ +L I +V+
Sbjct: 342 DPFIAENIDEVTRNMRTKGVVKLIAPYTRMRISWLAERLRITEPEVM 388
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 15/123 (12%)
Query: 3 DPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIK----LIKPYTR 58
+PF + ++ + R + +L+ Y R I DVL K L P+
Sbjct: 295 NPFDSQEMKPYRNDPRIFAMTELVDAYQRDDI--------YRYEDVLQKNTDLLADPFIA 346
Query: 59 IHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGR 118
+I ++R N+ T V +KLI PYTR+ I +++ +L I +V +L LI+D V+GR
Sbjct: 347 ENIDEVTR--NMRTKGV-VKLIAPYTRMRISWLAERLRITEPEVMDILSFLIVDGRVKGR 403
Query: 119 IDQ 121
ID+
Sbjct: 404 IDE 406
>sp|Q54HL6|CSN2_DICDI COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum
GN=csn2 PE=1 SV=1
Length = 449
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 74/102 (72%), Gaps = 2/102 (1%)
Query: 122 SNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMEL--LQDFYETTLEALK 179
++ M+ +K+ L Y KS+ + NY EK INS+LD +S+S +EL +Q ++ TL++L
Sbjct: 85 GDFDNMLESFKKFLPYTKSSASSNYIEKGINSVLDMVSSSNTIELDMIQKVFDLTLKSLL 144
Query: 180 DAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQMK 221
D KN+R+WF+TN KL KL F++ ++ +L++IL+ LH+SC+++
Sbjct: 145 DTKNERVWFRTNLKLAKLLFEKAEYGRLAKILRDLHKSCELE 186
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 63/91 (69%), Gaps = 6/91 (6%)
Query: 1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDV---LIKLI-KPY 56
MDDPFIR +IEDLLRNIRTQVL+KL+KPYTRI I FIS++LNI +SDV L+ LI
Sbjct: 342 MDDPFIRMYIEDLLRNIRTQVLLKLLKPYTRIRISFISKELNIPSSDVESLLVSLILDNK 401
Query: 57 TRIHIPFISRQLNIETSDVLIKLIKPYTRIH 87
R I +++QL ++T+ YT IH
Sbjct: 402 IRGSIDQVNQQLELDTAKS--SAYWKYTSIH 430
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 54/69 (78%), Gaps = 3/69 (4%)
Query: 55 PYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNT 114
P+ R++I + R NI T VL+KL+KPYTRI I FIS++LNI +SDVESLLVSLILDN
Sbjct: 345 PFIRMYIEDLLR--NIRTQ-VLLKLLKPYTRIRISFISKELNIPSSDVESLLVSLILDNK 401
Query: 115 VRGRIDQSN 123
+RG IDQ N
Sbjct: 402 IRGSIDQVN 410
>sp|Q9HFR0|CSN2_SCHPO COP9 signalosome complex subunit 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn2 PE=1 SV=1
Length = 437
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 124 YKEMMSRYKQLLLYIKS-AVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAK 182
Y +M+ Y++LL Y ++T+NYSEKSI +I++Y S+ +N E L+ FY+ T +AL++
Sbjct: 85 YDDMLQSYQRLLGYTNWLSITKNYSEKSIYNIVEYASSCENTEFLEKFYDVTTKALQNLN 144
Query: 183 NDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQ 216
N+RL K + + +++++K +L+Q+H+
Sbjct: 145 NERLMLKVLMHVARFLLTQKNYHKFKYLLRQMHE 178
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 40/56 (71%), Gaps = 3/56 (5%)
Query: 1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETS---DVLIKLI 53
+DD FIR++++ +L +IR+QVLI+L+KPYT + + ++++L + S L+ LI
Sbjct: 340 LDDDFIRQYVDKILYSIRSQVLIELVKPYTSVKLSLLAKKLGVSISIIEQALVGLI 395
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 73 SDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123
S VLI+L+KPYT + + ++++L + S +E LV LI+D V G+ID N
Sbjct: 358 SQVLIELVKPYTSVKLSLLAKKLGVSISIIEQALVGLIIDERVNGKIDMVN 408
>sp|Q20938|PS11A_CAEEL Probable 26S proteasome regulatory subunit rpn-6.1
OS=Caenorhabditis elegans GN=rpn-6.1 PE=2 SV=2
Length = 438
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 53 IKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILD 112
+ P R H +S ++ +E L ++I+PY+ + I +++Q+ I+ S VE L +ILD
Sbjct: 331 MDPVVRKHFHSLSERM-LEKD--LCRIIEPYSFVQIEHVAQQIGIDRSKVEKKLSQMILD 387
Query: 113 NTVRGRIDQS 122
+ G +DQ
Sbjct: 388 QKLSGSLDQG 397
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 3 DPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKL 52
DP +R+H L + + L ++I+PY+ + I +++Q+ I+ S V KL
Sbjct: 332 DPVVRKHFHSLSERMLEKDLCRIIEPYSFVQIEHVAQQIGIDRSKVEKKL 381
>sp|Q8BG32|PSD11_MOUSE 26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus
GN=Psmd11 PE=1 SV=3
Length = 422
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 2 DDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKL 52
DDP I H+ L N+ Q LI++I+P++R+ I IS + + +DV KL
Sbjct: 315 DDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKL 365
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 76 LIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123
LI++I+P++R+ I IS + + +DVE L +ILD G +DQ
Sbjct: 335 LIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGE 382
>sp|F1LMZ8|PSD11_RAT 26S proteasome non-ATPase regulatory subunit 11 OS=Rattus
norvegicus GN=Psmd11 PE=2 SV=2
Length = 422
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 2 DDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKL 52
DDP I H+ L N+ Q LI++I+P++R+ I IS + + +DV KL
Sbjct: 315 DDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKL 365
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 76 LIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123
LI++I+P++R+ I IS + + +DVE L +ILD G +DQ
Sbjct: 335 LIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGE 382
>sp|O00231|PSD11_HUMAN 26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens
GN=PSMD11 PE=1 SV=3
Length = 422
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 2 DDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKL 52
DDP I H+ L N+ Q LI++I+P++R+ I IS + + +DV KL
Sbjct: 315 DDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKL 365
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 76 LIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123
LI++I+P++R+ I IS + + +DVE L +ILD G +DQ
Sbjct: 335 LIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGE 382
>sp|Q2KI42|PSD11_BOVIN 26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus
GN=PSMD11 PE=2 SV=3
Length = 422
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 2 DDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKL 52
DDP I H+ L N+ Q LI++I+P++R+ I IS + + +DV KL
Sbjct: 315 DDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKL 365
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 76 LIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123
LI++I+P++R+ I IS + + +DVE L +ILD G +DQ
Sbjct: 335 LIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGE 382
>sp|F6P3G4|PS11A_DANRE 26S proteasome non-ATPase regulatory subunit 11A OS=Danio rerio
GN=psmd11a PE=2 SV=1
Length = 421
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 2 DDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKL 52
DDP I H+ L N+ Q LI++I+P++R+ I IS + + DV KL
Sbjct: 314 DDPIISTHLTKLYDNLLEQNLIRVIEPFSRVQIEHISELIKLSKGDVERKL 364
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 76 LIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123
LI++I+P++R+ I IS + + DVE L +ILD G +DQ
Sbjct: 334 LIRVIEPFSRVQIEHISELIKLSKGDVERKLSQMILDQKFHGILDQGE 381
>sp|Q12377|RPN6_YEAST 26S proteasome regulatory subunit RPN6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN6 PE=1 SV=3
Length = 434
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 76 LIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123
L K+I+P+ + I IS+ + ++T VE L +ILD G +DQ N
Sbjct: 347 LCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGN 394
>sp|F1QGH9|PS11B_DANRE 26S proteasome non-ATPase regulatory subunit 11B OS=Danio rerio
GN=psmd11b PE=2 SV=1
Length = 422
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 2 DDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKL 52
DDP I H+ L N+ Q LI++I+P++R+ I I+ + + +DV KL
Sbjct: 315 DDPIINTHLAKLYDNLLEQNLIRVIEPFSRVQITHIAGLIKLSKNDVERKL 365
Score = 37.7 bits (86), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 76 LIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123
LI++I+P++R+ I I+ + + +DVE L +ILD G +DQ
Sbjct: 335 LIRVIEPFSRVQITHIAGLIKLSKNDVERKLSQMILDKKFHGILDQGE 382
>sp|F6XBL2|PSD11_XENTR 26S proteasome non-ATPase regulatory subunit 11 OS=Xenopus
tropicalis GN=psmd11 PE=3 SV=2
Length = 422
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Query: 2 DDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKP 55
DDP I H+ L N+ Q LI++I+P++R+ I IS LIKL KP
Sbjct: 315 DDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIDHISS---------LIKLPKP 359
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 76 LIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123
LI++I+P++R+ I IS + + +VE L +ILD G +DQ
Sbjct: 335 LIRVIEPFSRVQIDHISSLIKLPKPEVERKLSQMILDKKFHGILDQGE 382
>sp|Q9P7S2|RPN6_SCHPO Probable 26S proteasome regulatory subunit rpn6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn6 PE=3 SV=1
Length = 421
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 3 DPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKL 52
DP IR H+ L N+ Q L+++++P++R+ + I+ + + T V KL
Sbjct: 314 DPIIRSHLSSLYDNLLEQNLLRVVEPFSRVEVSHIAELIGLSTVQVEGKL 363
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 76 LIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123
L+++++P++R+ + I+ + + T VE L +ILD G +DQ +
Sbjct: 333 LLRVVEPFSRVEVSHIAELIGLSTVQVEGKLSQMILDKIFYGILDQGS 380
>sp|A8X379|PS11B_CAEBR Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis briggsae GN=rpn-6.2 PE=3 SV=1
Length = 411
Score = 37.4 bits (85), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 78 KLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSNYKEMMSRYKQLLLY 137
++I+PY+ I + +I+R + + E + +ILD + G IDQ +++Y
Sbjct: 326 RVIEPYSEIELSYIARVIGMTVPPTEKAIARMILDKKLMGSIDQHG--------DTVVIY 377
Query: 138 IKSAVTRNYS 147
K+ T+ ++
Sbjct: 378 PKAGATKQFT 387
>sp|Q54UB5|PSD11_DICDI 26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium
discoideum GN=psmD11 PE=2 SV=1
Length = 413
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 28/42 (66%)
Query: 2 DDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNI 43
DDP I H+ +L N+ Q L ++I+P++R+ I I++ +++
Sbjct: 306 DDPIIHSHLTELYSNLLEQNLCRIIEPFSRVEISHIAKLIDL 347
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 76 LIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQS 122
L ++I+P++R+ I I++ +++ VE L +ILD G +DQ
Sbjct: 326 LCRIIEPFSRVEISHIAKLIDLPVDVVERKLSLMILDKKYNGILDQG 372
>sp|Q9GS00|CSN1_CAEEL COP9 signalosome complex subunit 1 OS=Caenorhabditis elegans
GN=csn-1 PE=1 SV=1
Length = 601
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/78 (17%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 3 DPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIP 62
DPFI ++++L IR + +++ ++PY+ I + ++ + + ++++ + L++ + H+
Sbjct: 424 DPFISRNVDELFEKIRQKCVLQYLQPYSTIKMATMAEAVGMSSAELQLSLLELIEQKHV- 482
Query: 63 FISRQLNIETSDVLIKLI 80
L I+ ++ +++++
Sbjct: 483 ----SLKIDQNEGIVRIL 496
>sp|P34481|PS11B_CAEEL Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis elegans GN=rpn-6.2 PE=3 SV=3
Length = 416
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 78 KLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQ 121
++I+PY+ I + +I+R + + VE + +ILD + G IDQ
Sbjct: 331 RVIEPYSEIELSYIARVIGMTVPPVERAIARMILDKKLMGSIDQ 374
>sp|Q7KLV9|PSD11_DROME 26S proteasome non-ATPase regulatory subunit 11 OS=Drosophila
melanogaster GN=Rpn6 PE=1 SV=1
Length = 422
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 76 LIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123
L ++I+PY+R+ + ++ + + VE L +ILD G +DQ
Sbjct: 335 LCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGE 382
>sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 OS=Arabidopsis
thaliana GN=RPN6A PE=1 SV=1
Length = 419
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 76 LIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQS 122
L +LI+P++R+ I I+ + + VE L +ILD G +DQ
Sbjct: 331 LCRLIEPFSRVEIAHIAELIGLPLDHVEKKLSQMILDKKFAGTLDQG 377
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 2 DDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKL 52
DDP + H+ L + Q L +LI+P++R+ I I+ + + V KL
Sbjct: 311 DDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIGLPLDHVEKKL 361
>sp|Q3KLI6|RL15_CHLTA 50S ribosomal protein L15 OS=Chlamydia trachomatis serovar A
(strain HAR-13 / ATCC VR-571B) GN=rplO PE=3 SV=1
Length = 144
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 117 GRIDQSNYKEMMSR--YKQLLLYIKSAV-------TRNYSEKSINSILDYISTSKNMELL 167
G+ +K SR YK+ Y V TR +S K + ++ I+T + E+
Sbjct: 29 GKTSSRGHKGDCSRSGYKRRFGYEGGGVPLYRRVPTRGFSHKRFDKCVEEITTQRLNEIF 88
Query: 168 QDFYETTLEALKDAK 182
+ E +LEALK+ K
Sbjct: 89 DNGAEVSLEALKERK 103
>sp|Q80TD3|FNIP2_MOUSE Folliculin-interacting protein 2 OS=Mus musculus GN=Fnip2 PE=2 SV=2
Length = 1108
Score = 33.9 bits (76), Expect = 0.84, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 9 HIEDLLRN--IRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISR 66
H+ED L+ +++++L + ++ +TR+H+ +S L IE++D + L+ H P++++
Sbjct: 1048 HLEDRLQEMYLKSKMLSEYLRGHTRVHVKELSVVLGIESND--LPLLTAIASTHSPYVAQ 1105
Query: 67 QL 68
L
Sbjct: 1106 IL 1107
>sp|B0BCF0|RL15_CHLTB 50S ribosomal protein L15 OS=Chlamydia trachomatis serovar L2b
(strain UCH-1/proctitis) GN=rplO PE=3 SV=1
Length = 144
Score = 33.9 bits (76), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 117 GRIDQSNYKEMMSR--YKQLLLYIKSAV-------TRNYSEKSINSILDYISTSKNMELL 167
G+ +K SR YK+ Y V TR +S K + ++ I+T + E+
Sbjct: 29 GKTSGRGHKGDGSRSGYKRRFGYEGGGVPLYRRVPTRGFSHKRFDKCVEEITTQRLNEIF 88
Query: 168 QDFYETTLEALKDAK 182
+ E +LEALK+ K
Sbjct: 89 DNGAEVSLEALKERK 103
>sp|B0B885|RL15_CHLT2 50S ribosomal protein L15 OS=Chlamydia trachomatis serovar L2
(strain 434/Bu / ATCC VR-902B) GN=rplO PE=3 SV=1
Length = 144
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 117 GRIDQSNYKEMMSR--YKQLLLYIKSAV-------TRNYSEKSINSILDYISTSKNMELL 167
G+ +K SR YK+ Y V TR +S K + ++ I+T + E+
Sbjct: 29 GKTSGRGHKGDGSRSGYKRRFGYEGGGVPLYRRVPTRGFSHKRFDKCVEEITTQRLNEIF 88
Query: 168 QDFYETTLEALKDAK 182
+ E +LEALK+ K
Sbjct: 89 DNGAEVSLEALKERK 103
>sp|Q9P278|FNIP2_HUMAN Folliculin-interacting protein 2 OS=Homo sapiens GN=FNIP2 PE=1 SV=2
Length = 1114
Score = 33.1 bits (74), Expect = 1.7, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 9 HIEDLLRN--IRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISR 66
H+ED L+ +++++L + ++ +TR+H+ + L IE++D + L+ H P++++
Sbjct: 1054 HLEDRLQEMYLKSKMLSEYLRGHTRVHVKELGVVLGIESND--LPLLTAIASTHSPYVAQ 1111
Query: 67 QL 68
L
Sbjct: 1112 IL 1113
>sp|Q9VVU5|CSN1_DROME COP9 signalosome complex subunit 1b OS=Drosophila melanogaster
GN=CSN1b PE=2 SV=1
Length = 525
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 75 VLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123
LI+ PY + ++ N D+E+ ++ LILD ++ RID N
Sbjct: 402 ALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHN 450
>sp|P57193|FABB_BUCAI 3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS) GN=fabB PE=3
SV=1
Length = 406
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 136 LYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLG 195
L ++SAV N +SIN I +S N F +EA+KDAK DR +++ N ++G
Sbjct: 42 LGMRSAVWGNIKLESINIITQKLSRFMNNASRYSFV-AMMEAIKDAKIDREYYQKNPRVG 100
Query: 196 KLYFDREDFNK 206
+ F+K
Sbjct: 101 LISGSGCSFSK 111
>sp|B4LJT9|EIF3M_DROVI Eukaryotic translation initiation factor 3 subunit M OS=Drosophila
virilis GN=Tango7 PE=3 SV=1
Length = 387
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 18/144 (12%)
Query: 26 IKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQ-LNIETSD------VLIK 78
+KP + I L+I SD L ++ Y H F++ Q LN E + ++
Sbjct: 227 LKPVRFLEGDLIHDLLSIFVSDKLPSYVQFYED-HKEFVNSQGLNHEQNMKKMRLLTFMQ 285
Query: 79 LIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSNYKEMMSRYKQLLLYI 138
L + Y + ++++L I +VE ++ ++ VR R+DQ+N K ++I
Sbjct: 286 LAESYPEMTFDTLTKELQIGEDEVEPFVIEVLKTKLVRARLDQANRK----------VHI 335
Query: 139 KSAVTRNYSEKSINSILDYISTSK 162
S + R + + D + K
Sbjct: 336 SSTMHRTFGAPQWEQLRDLLQAWK 359
>sp|B4KT65|EIF3M_DROMO Eukaryotic translation initiation factor 3 subunit M OS=Drosophila
mojavensis GN=Tango7 PE=3 SV=1
Length = 387
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 18/144 (12%)
Query: 26 IKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQ-LNIETSD------VLIK 78
+KP + I L+I SD L ++ Y H F++ Q LN E + ++
Sbjct: 227 LKPVRFLEGDLIHDLLSIFVSDKLPSYVQFYED-HKEFVNSQGLNHEQNMKKMRLLTFMQ 285
Query: 79 LIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSNYKEMMSRYKQLLLYI 138
L + Y + ++++L I +VE ++ ++ VR R+DQ+N K ++I
Sbjct: 286 LAESYPEMTFDTLTKELQINEDEVEPFVIEVLKTKLVRARLDQANRK----------VHI 335
Query: 139 KSAVTRNYSEKSINSILDYISTSK 162
S + R + + D + K
Sbjct: 336 SSTMHRTFGAPQWEQLRDLLQAWK 359
>sp|B4LG58|EIF3E_DROVI Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
virilis GN=eIF3-S6 PE=3 SV=1
Length = 434
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 63 FISRQLNIETSDVLIKLIKPYTRIH----IPFISRQLNIETSDVESLLVSLILDNTVRGR 118
FI LN D + + + + RIH I ++ +LN++ ++ E +V+LI + + +
Sbjct: 318 FIVACLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAK 377
Query: 119 IDQSNYKEMM-----SRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNME 165
ID +M S Y+QL+ I S R+ + + +++ S KN E
Sbjct: 378 IDSKLGHVVMGTQPLSPYQQLVEKIDSLSMRS---EHLAGLIERKSKQKNQE 426
>sp|B4KY00|EIF3E_DROMO Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
mojavensis GN=eIF3-S6 PE=3 SV=1
Length = 434
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 63 FISRQLNIETSDVLIKLIKPYTRIH----IPFISRQLNIETSDVESLLVSLILDNTVRGR 118
FI LN D + + + + RIH I ++ +LN++ ++ E +V+LI + + +
Sbjct: 318 FIVACLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAK 377
Query: 119 IDQSNYKEMM-----SRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNME 165
ID +M S Y+QL+ I S R+ + + +++ S KN E
Sbjct: 378 IDSKLGHVVMGTQPLSPYQQLVEKIDSLSMRS---EHLAGLIERKSKQKNQE 426
>sp|B3M4D9|EIF3E_DROAN Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
ananassae GN=eIF3-S6 PE=3 SV=1
Length = 434
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 63 FISRQLNIETSDVLIKLIKPYTRIH----IPFISRQLNIETSDVESLLVSLILDNTVRGR 118
FI LN D + + + + RIH I ++ +LN++ ++ E +V+LI + + +
Sbjct: 318 FIVACLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAK 377
Query: 119 IDQSNYKEMM-----SRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNME 165
ID +M S Y+QL+ I S R+ + + +++ S KN E
Sbjct: 378 IDSKLGHVVMGTQPLSPYQQLVEKIDSLSMRS---EHLAGLIERKSKQKNQE 426
>sp|B4N3B0|EI3E2_DROWI Eukaryotic translation initiation factor 3 subunit E-2
OS=Drosophila willistoni GN=eIF3-S6-2 PE=3 SV=1
Length = 434
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 63 FISRQLNIETSDVLIKLIKPYTRIH----IPFISRQLNIETSDVESLLVSLILDNTVRGR 118
FI LN D + + + + RIH I ++ +LN++ ++ E +V+LI + + +
Sbjct: 318 FIVACLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAK 377
Query: 119 IDQSNYKEMM-----SRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNME 165
ID +M S Y+QL+ I S R+ + + +++ S KN E
Sbjct: 378 IDSKLGHVVMGTQPLSPYQQLVEKIDSLSMRS---EHLAGLIERKSKQKNQE 426
>sp|B4IXG1|EIF3E_DROGR Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
grimshawi GN=eIF3-S6 PE=3 SV=1
Length = 434
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 63 FISRQLNIETSDVLIKLIKPYTRIH----IPFISRQLNIETSDVESLLVSLILDNTVRGR 118
FI LN D + + + + RIH I ++ +LN++ ++ E +V+LI + + +
Sbjct: 318 FIVACLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAK 377
Query: 119 IDQSNYKEMM-----SRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNME 165
ID +M S Y+QL+ I S R+ + + +++ S KN E
Sbjct: 378 IDSKLGHVVMGTQPLSPYQQLVEKIDSLSMRS---EHLAGLIERKSKQKNQE 426
>sp|Q8TF40|FNIP1_HUMAN Folliculin-interacting protein 1 OS=Homo sapiens GN=FNIP1 PE=1 SV=3
Length = 1166
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 5 FIREHIEDLLRNI--RTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIP 62
F H+ED L+ + ++++L + ++ R+H+ + L IE+SD + L+ H P
Sbjct: 1102 FCVMHLEDRLQELYFKSKMLSEYLRGQMRVHVKELGVVLGIESSD--LPLLAAVASTHSP 1159
Query: 63 FISR 66
++++
Sbjct: 1160 YVAQ 1163
>sp|Q5W4S4|FNIP1_CHICK Folliculin-interacting protein 1 OS=Gallus gallus GN=FNIP1 PE=3 SV=1
Length = 1157
Score = 31.2 bits (69), Expect = 5.4, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 5 FIREHIEDLLRNI--RTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIP 62
F H+ED L+ + ++++L + +K R+H+ + L IE+SD + L+ H P
Sbjct: 1093 FCVMHLEDRLQELYFKSKMLSEYLKGQMRVHVKELGVVLGIESSD--LPLLAAVASTHSP 1150
Query: 63 FISRQL 68
++++ L
Sbjct: 1151 YVAQIL 1156
>sp|Q54QX3|CSN1_DICDI COP9 signalosome complex subunit 1 OS=Dictyostelium discoideum
GN=csn1 PE=1 SV=1
Length = 458
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 73 SDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSNYKEMMSRYK 132
S L++ PY + + ++ N + +E + LI++N ++ RID N +
Sbjct: 328 SKALVQYFSPYQSVDMNIMASAFNTTVTLLEKEISKLIMENEIQARIDSHNKR------- 380
Query: 133 QLLLYIKSAVTRNYS-EKSINSILDYISTSKNM 164
LY + A R + EK++ D+ ++S ++
Sbjct: 381 ---LYARKADQRTTTFEKTVQVGSDFQNSSNSL 410
>sp|B4JW83|EIF3M_DROGR Eukaryotic translation initiation factor 3 subunit M OS=Drosophila
grimshawi GN=Tango7 PE=3 SV=1
Length = 387
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 76 LIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSNYKEMMSRYKQLL 135
++L + Y + ++++L I +VE ++ ++ VR R+DQ+N K
Sbjct: 283 FMQLAESYPEMSFDTLTKELQINDDEVEPFVIEVLKTKLVRARLDQANRK---------- 332
Query: 136 LYIKSAVTRNYSEKSINSILDYISTSK 162
++I S + R + + D + K
Sbjct: 333 VHISSTMHRTFGAPQWEQLRDLLQAWK 359
>sp|B4MYA1|EI3E1_DROWI Eukaryotic translation initiation factor 3 subunit E-1
OS=Drosophila willistoni GN=eIF3-S6-1 PE=3 SV=1
Length = 434
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 63 FISRQLNIETSDVLIKLIKPYTRIH----IPFISRQLNIETSDVESLLVSLILDNTVRGR 118
FI LN D + + + + RIH I ++ +LN++ ++ E +V+LI + + +
Sbjct: 318 FIVSCLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAK 377
Query: 119 IDQSNYKEMM-----SRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNME 165
ID +M S Y+QL+ I S R+ + + +++ S KN E
Sbjct: 378 IDSKLGHVVMGTQPLSPYQQLVEKIDSLSMRS---EHLADLIERKSKQKNQE 426
>sp|B4H5N1|EIF3E_DROPE Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
persimilis GN=eIF3-S6 PE=3 SV=1
Length = 434
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 63 FISRQLNIETSDVLIKLIKPYTRIH----IPFISRQLNIETSDVESLLVSLILDNTVRGR 118
FI LN D + + + + RIH I ++ +LN++ ++ E +V+LI + + +
Sbjct: 318 FIVACLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAK 377
Query: 119 IDQSNYKEMM-----SRYKQLLLYIKSAVTRN 145
ID +M S Y+QL+ I S R+
Sbjct: 378 IDSKLGHVVMGTQPLSPYQQLVEKIDSLSMRS 409
>sp|B4QMY7|EIF3E_DROSI Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
simulans GN=eIF3-S6 PE=3 SV=1
Length = 435
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 63 FISRQLNIETSDVLIKLIKPYTRIH----IPFISRQLNIETSDVESLLVSLILDNTVRGR 118
FI LN D + + + + RIH I ++ +LN++ ++ E +V+LI + + +
Sbjct: 318 FIVACLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAK 377
Query: 119 IDQSNYKEMM-----SRYKQLLLYIKSAVTRN 145
ID +M S Y+QL+ I S R+
Sbjct: 378 IDSKLGHVVMGTQPLSPYQQLVEKIDSLSMRS 409
>sp|O77410|EIF3E_DROME Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
melanogaster GN=eIF3-S6 PE=2 SV=1
Length = 435
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 63 FISRQLNIETSDVLIKLIKPYTRIH----IPFISRQLNIETSDVESLLVSLILDNTVRGR 118
FI LN D + + + + RIH I ++ +LN++ ++ E +V+LI + + +
Sbjct: 318 FIVACLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAK 377
Query: 119 IDQSNYKEMM-----SRYKQLLLYIKSAVTRN 145
ID +M S Y+QL+ I S R+
Sbjct: 378 IDSKLGHVVMGTQPLSPYQQLVEKIDSLSMRS 409
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,677,837
Number of Sequences: 539616
Number of extensions: 2654041
Number of successful extensions: 9065
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 8943
Number of HSP's gapped (non-prelim): 209
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)