Query psy3486
Match_columns 222
No_of_seqs 257 out of 394
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 17:57:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3txn_A 26S proteasome regulato 99.3 9.8E-13 3.4E-17 122.1 3.9 112 106-220 17-131 (394)
2 3txn_A 26S proteasome regulato 99.2 4.5E-12 1.5E-16 117.7 5.8 72 1-72 286-357 (394)
3 4b4t_R RPN7, 26S proteasome re 99.2 6.5E-12 2.2E-16 116.1 2.8 69 1-69 317-385 (429)
4 4b4t_Q 26S proteasome regulato 99.0 5E-10 1.7E-14 97.5 6.4 68 1-68 326-393 (434)
5 1ufm_A COP9 complex subunit 4; 98.9 1.1E-10 3.6E-15 87.2 0.4 62 8-69 7-68 (84)
6 4b4t_P 26S proteasome regulato 98.9 4.6E-10 1.6E-14 104.5 3.4 62 7-68 335-396 (445)
7 1ufm_A COP9 complex subunit 4; 98.9 1.4E-09 4.6E-14 81.1 5.2 61 60-123 8-68 (84)
8 4b4t_R RPN7, 26S proteasome re 98.9 1.4E-09 4.7E-14 100.5 5.3 69 52-123 317-385 (429)
9 4b4t_Q 26S proteasome regulato 98.7 1.5E-08 5.3E-13 88.1 7.1 114 106-220 53-167 (434)
10 4b4t_P 26S proteasome regulato 98.7 5.8E-09 2E-13 97.0 3.9 63 58-123 335-397 (445)
11 3t5x_A PCI domain-containing p 97.9 1.3E-05 4.4E-10 67.7 5.4 73 3-123 107-185 (203)
12 4b4t_O 26S proteasome regulato 97.5 9.5E-05 3.2E-09 67.7 6.2 68 3-70 277-346 (393)
13 3u3w_A Transcriptional activat 97.0 0.0045 1.5E-07 51.8 10.1 102 118-219 125-227 (293)
14 4b4t_O 26S proteasome regulato 97.0 0.00098 3.3E-08 61.0 6.2 68 53-123 276-345 (393)
15 3t5v_B Nuclear mRNA export pro 96.8 0.0031 1.1E-07 59.4 8.3 77 47-123 316-421 (455)
16 4b4t_S RPN3, 26S proteasome re 96.6 0.0017 5.8E-08 62.4 4.5 77 47-123 362-440 (523)
17 3ro3_A PINS homolog, G-protein 96.2 0.01 3.4E-07 42.6 6.0 111 110-220 51-161 (164)
18 3ro3_A PINS homolog, G-protein 95.4 0.066 2.3E-06 38.1 7.6 104 116-219 17-120 (164)
19 3u3w_A Transcriptional activat 95.4 0.076 2.6E-06 44.2 9.0 133 84-218 45-185 (293)
20 2qfc_A PLCR protein; TPR, HTH, 95.0 0.048 1.6E-06 45.4 6.5 130 87-218 48-185 (293)
21 2qfc_A PLCR protein; TPR, HTH, 94.5 0.099 3.4E-06 43.5 7.4 102 118-219 125-227 (293)
22 3ro2_A PINS homolog, G-protein 94.1 0.058 2E-06 43.2 4.9 110 110-219 225-334 (338)
23 3ro2_A PINS homolog, G-protein 93.8 0.076 2.6E-06 42.5 5.1 109 110-218 185-293 (338)
24 4a1s_A PINS, partner of inscut 93.7 0.1 3.5E-06 44.3 5.9 109 110-218 225-333 (411)
25 3sf4_A G-protein-signaling mod 93.6 0.097 3.3E-06 43.7 5.5 109 110-218 229-337 (406)
26 3gw4_A Uncharacterized protein 93.4 0.42 1.4E-05 36.1 8.5 102 117-218 35-137 (203)
27 3ulq_A Response regulator aspa 93.4 0.28 9.7E-06 41.9 8.2 104 116-219 192-295 (383)
28 3q15_A PSP28, response regulat 93.3 0.61 2.1E-05 39.9 10.3 102 118-219 111-213 (378)
29 3q15_A PSP28, response regulat 93.0 0.23 7.8E-06 42.6 7.1 104 115-219 189-292 (378)
30 4a1s_A PINS, partner of inscut 92.9 0.13 4.6E-06 43.6 5.3 110 110-219 265-374 (411)
31 3sf4_A G-protein-signaling mod 92.8 0.14 4.9E-06 42.7 5.4 108 111-218 190-297 (406)
32 2ifu_A Gamma-SNAP; membrane fu 92.5 0.15 5.1E-06 43.0 5.2 106 111-218 79-185 (307)
33 3ulq_A Response regulator aspa 92.5 0.26 8.7E-06 42.2 6.7 105 114-218 149-254 (383)
34 1qqe_A Vesicular transport pro 92.2 0.44 1.5E-05 39.7 7.6 108 110-218 79-188 (292)
35 3nf1_A KLC 1, kinesin light ch 92.0 0.69 2.4E-05 36.9 8.3 105 114-218 117-225 (311)
36 4b4t_S RPN3, 26S proteasome re 91.9 0.085 2.9E-06 50.7 3.1 61 9-69 379-440 (523)
37 3nf1_A KLC 1, kinesin light ch 91.8 0.71 2.4E-05 36.8 8.2 106 114-219 75-184 (311)
38 3edt_B KLC 2, kinesin light ch 91.7 0.78 2.7E-05 35.8 8.2 106 113-218 48-157 (283)
39 3gw4_A Uncharacterized protein 91.0 0.79 2.7E-05 34.5 7.3 106 113-219 71-178 (203)
40 3n71_A Histone lysine methyltr 89.8 1.1 3.7E-05 41.9 8.5 98 119-216 320-421 (490)
41 3edt_B KLC 2, kinesin light ch 89.7 0.78 2.7E-05 35.8 6.4 102 117-218 10-115 (283)
42 3qww_A SET and MYND domain-con 89.4 1.2 4.2E-05 40.9 8.4 97 120-216 310-410 (433)
43 4gco_A Protein STI-1; structur 87.4 2.5 8.5E-05 30.9 7.5 88 117-216 22-109 (126)
44 3rkv_A Putative peptidylprolyl 87.3 1.5 5E-05 32.7 6.3 101 111-217 14-126 (162)
45 2xev_A YBGF; tetratricopeptide 87.0 3.3 0.00011 28.7 7.8 93 119-217 13-105 (129)
46 3t5v_B Nuclear mRNA export pro 86.4 0.28 9.6E-06 46.1 2.2 66 3-68 323-420 (455)
47 3qwp_A SET and MYND domain-con 86.4 1.5 5.2E-05 40.0 7.1 101 116-216 295-399 (429)
48 1elr_A TPR2A-domain of HOP; HO 86.0 3.1 0.00011 28.3 7.0 94 118-217 14-108 (131)
49 2ifu_A Gamma-SNAP; membrane fu 83.8 3 0.0001 34.8 7.2 100 117-218 45-145 (307)
50 3upv_A Heat shock protein STI1 83.3 5.5 0.00019 27.9 7.5 90 117-218 13-102 (126)
51 2kck_A TPR repeat; tetratricop 82.7 4.2 0.00014 26.8 6.4 92 118-219 16-108 (112)
52 3hym_B Cell division cycle pro 82.1 7 0.00024 31.2 8.5 93 119-217 170-265 (330)
53 3chm_A COP9 signalosome comple 82.1 1.4 4.7E-05 36.1 4.2 41 83-123 107-149 (169)
54 1qqe_A Vesicular transport pro 81.9 4.5 0.00015 33.4 7.5 99 118-217 47-147 (292)
55 2fbn_A 70 kDa peptidylprolyl i 81.8 6.4 0.00022 30.1 7.9 101 111-217 41-151 (198)
56 1na0_A Designed protein CTPR3; 81.6 9.3 0.00032 25.4 8.0 88 118-217 19-106 (125)
57 3q49_B STIP1 homology and U bo 81.1 7.8 0.00027 27.1 7.6 90 117-218 18-107 (137)
58 1hz4_A MALT regulatory protein 81.0 8.6 0.00029 32.1 9.1 102 116-218 101-204 (373)
59 4gcn_A Protein STI-1; structur 80.7 5.5 0.00019 28.9 6.9 91 117-213 17-108 (127)
60 4b0z_A RPN12, 26S proteasome r 80.5 2.3 7.9E-05 35.9 5.3 47 7-53 166-213 (229)
61 2dba_A Smooth muscle cell asso 80.3 6.6 0.00022 27.5 7.0 93 116-217 36-128 (148)
62 3sz7_A HSC70 cochaperone (SGT) 80.1 7.4 0.00025 28.7 7.6 90 117-218 20-109 (164)
63 3u4t_A TPR repeat-containing p 79.7 5 0.00017 31.4 6.8 88 119-215 14-101 (272)
64 2lni_A Stress-induced-phosphop 79.3 6 0.0002 27.0 6.4 91 116-218 24-114 (133)
65 2fo7_A Synthetic consensus TPR 78.5 11 0.00039 25.1 7.6 88 118-217 45-132 (136)
66 3gyz_A Chaperone protein IPGC; 78.1 8.6 0.00029 29.4 7.6 111 91-219 25-135 (151)
67 3t5x_A PCI domain-containing p 76.7 2.5 8.5E-05 35.1 4.3 72 27-98 76-154 (203)
68 3uq3_A Heat shock protein STI1 76.6 8.9 0.0003 29.3 7.2 93 117-216 14-107 (258)
69 3as5_A MAMA; tetratricopeptide 76.6 14 0.00048 26.3 8.0 25 192-216 148-172 (186)
70 2vyi_A SGTA protein; chaperone 76.4 14 0.00049 24.6 7.7 90 116-217 20-109 (131)
71 1elw_A TPR1-domain of HOP; HOP 75.6 11 0.00037 24.9 6.7 88 118-217 14-101 (118)
72 1hh8_A P67PHOX, NCF-2, neutrop 74.8 13 0.00043 28.1 7.7 94 118-217 47-150 (213)
73 1ihg_A Cyclophilin 40; ppiase 74.4 6.1 0.00021 34.7 6.4 101 111-217 226-336 (370)
74 2xcb_A PCRH, regulatory protei 73.5 20 0.00069 25.8 8.2 109 92-218 8-116 (142)
75 1hz4_A MALT regulatory protein 73.2 14 0.00049 30.7 8.2 102 117-219 62-166 (373)
76 1a17_A Serine/threonine protei 72.7 19 0.00065 25.5 7.8 26 191-216 120-145 (166)
77 2xvc_A ESCRT-III, SSO0910; cel 72.3 4.8 0.00017 27.8 4.1 34 84-117 24-57 (59)
78 1qbj_A Protein (double-strande 71.7 4.2 0.00014 29.2 3.9 45 73-117 12-59 (81)
79 1a17_A Serine/threonine protei 71.3 24 0.00083 24.9 8.1 89 117-217 22-110 (166)
80 2vgx_A Chaperone SYCD; alterna 70.9 23 0.00078 26.2 8.2 110 91-218 10-119 (148)
81 2ond_A Cleavage stimulation fa 70.5 16 0.00053 30.2 7.8 89 121-219 182-272 (308)
82 3n71_A Histone lysine methyltr 70.4 9.7 0.00033 35.4 7.1 112 107-218 350-465 (490)
83 1qbj_A Protein (double-strande 70.0 3.9 0.00013 29.4 3.4 37 19-55 12-51 (81)
84 2e2e_A Formate-dependent nitri 69.6 16 0.00056 26.9 7.1 89 118-218 54-145 (177)
85 3qky_A Outer membrane assembly 68.4 20 0.00068 28.3 7.7 94 118-217 25-126 (261)
86 2vq2_A PILW, putative fimbrial 68.2 28 0.00095 25.8 8.2 28 190-217 149-176 (225)
87 2y4t_A DNAJ homolog subfamily 68.1 9.9 0.00034 32.2 6.1 94 115-216 264-357 (450)
88 4b0z_A RPN12, 26S proteasome r 67.9 4.9 0.00017 33.8 4.1 80 2-106 131-212 (229)
89 2vq2_A PILW, putative fimbrial 67.4 27 0.00091 25.9 7.9 89 118-217 123-211 (225)
90 1qgp_A Protein (double strande 67.3 6.4 0.00022 27.7 4.0 46 73-118 16-64 (77)
91 2q7f_A YRRB protein; TPR, prot 67.1 9.5 0.00032 29.0 5.4 27 191-217 128-154 (243)
92 3vtx_A MAMA; tetratricopeptide 66.9 14 0.00049 27.2 6.2 19 118-136 49-67 (184)
93 4i17_A Hypothetical protein; T 66.7 19 0.00064 27.7 7.1 89 118-217 17-105 (228)
94 2xpi_A Anaphase-promoting comp 66.7 22 0.00074 31.4 8.3 29 188-216 516-544 (597)
95 2jt1_A PEFI protein; solution 66.6 4.8 0.00016 28.7 3.3 32 18-49 5-42 (77)
96 3uq3_A Heat shock protein STI1 66.0 27 0.00091 26.5 7.8 92 115-218 146-237 (258)
97 2ho1_A Type 4 fimbrial biogene 65.9 18 0.00061 27.9 6.8 25 192-216 179-203 (252)
98 2gw1_A Mitochondrial precursor 65.7 28 0.00096 29.7 8.6 28 189-216 413-443 (514)
99 1xnf_A Lipoprotein NLPI; TPR, 65.4 28 0.00096 26.9 7.9 91 115-217 50-140 (275)
100 2pl2_A Hypothetical conserved 65.4 9.7 0.00033 29.9 5.2 85 119-216 129-213 (217)
101 2heo_A Z-DNA binding protein 1 65.2 5.6 0.00019 27.0 3.3 34 21-54 14-48 (67)
102 3qky_A Outer membrane assembly 65.1 18 0.00062 28.6 6.9 26 192-217 152-177 (261)
103 3chm_A COP9 signalosome comple 64.2 6.4 0.00022 32.0 4.0 60 11-70 89-150 (169)
104 1xn7_A Hypothetical protein YH 64.0 8 0.00027 27.5 4.0 43 74-116 5-47 (78)
105 3k9i_A BH0479 protein; putativ 63.9 13 0.00046 25.8 5.3 89 120-217 2-90 (117)
106 3as5_A MAMA; tetratricopeptide 63.9 36 0.0012 24.1 8.3 89 118-218 52-140 (186)
107 2if4_A ATFKBP42; FKBP-like, al 63.8 16 0.00056 31.1 6.8 99 110-214 181-290 (338)
108 2ho1_A Type 4 fimbrial biogene 63.7 21 0.00073 27.4 6.9 28 191-218 212-239 (252)
109 3u4t_A TPR repeat-containing p 63.7 18 0.0006 28.2 6.4 87 118-213 47-133 (272)
110 1qgp_A Protein (double strande 63.6 6 0.0002 27.8 3.3 37 19-55 16-55 (77)
111 2xpi_A Anaphase-promoting comp 63.6 15 0.00051 32.5 6.6 99 113-218 480-580 (597)
112 4eqf_A PEX5-related protein; a 63.6 25 0.00085 28.9 7.6 28 191-218 284-311 (365)
113 2heo_A Z-DNA binding protein 1 63.3 9.5 0.00032 25.8 4.2 49 75-124 14-63 (67)
114 1wi9_A Protein C20ORF116 homol 63.0 9.1 0.00031 27.4 4.1 51 74-124 10-61 (72)
115 1wi9_A Protein C20ORF116 homol 62.6 4.7 0.00016 28.9 2.5 47 20-66 10-56 (72)
116 2l6j_A TPR repeat-containing p 62.4 6.2 0.00021 26.4 3.1 83 117-205 13-95 (111)
117 2c2l_A CHIP, carboxy terminus 62.3 17 0.00059 29.9 6.4 89 117-217 13-101 (281)
118 1q1h_A TFE, transcription fact 61.6 3.3 0.00011 30.0 1.6 48 2-49 4-51 (110)
119 1xnf_A Lipoprotein NLPI; TPR, 61.5 31 0.0011 26.6 7.5 94 117-218 14-107 (275)
120 2y4t_A DNAJ homolog subfamily 60.9 16 0.00054 30.9 6.1 100 114-216 217-323 (450)
121 2hr2_A Hypothetical protein; a 60.8 16 0.00055 29.3 5.7 99 117-216 20-130 (159)
122 4ga2_A E3 SUMO-protein ligase 60.6 22 0.00077 26.2 6.3 85 117-213 40-125 (150)
123 2fo7_A Synthetic consensus TPR 60.4 34 0.0011 22.6 8.8 87 119-217 12-98 (136)
124 2k02_A Ferrous iron transport 60.4 8.4 0.00029 28.2 3.7 45 74-118 5-49 (87)
125 1xn7_A Hypothetical protein YH 60.2 7.7 0.00026 27.6 3.3 37 20-56 5-41 (78)
126 2gw1_A Mitochondrial precursor 60.0 17 0.00058 31.1 6.1 93 113-218 11-103 (514)
127 1wao_1 Serine/threonine protei 59.7 21 0.00072 32.3 7.0 95 111-217 9-103 (477)
128 2q7f_A YRRB protein; TPR, prot 59.6 53 0.0018 24.7 8.4 92 115-218 98-189 (243)
129 3ieg_A DNAJ homolog subfamily 59.4 18 0.00061 28.9 5.9 35 183-217 267-301 (359)
130 1p5q_A FKBP52, FK506-binding p 58.7 34 0.0011 29.1 7.8 99 111-216 150-258 (336)
131 3ieg_A DNAJ homolog subfamily 58.5 27 0.00093 27.8 6.8 93 117-217 243-335 (359)
132 1fch_A Peroxisomal targeting s 57.0 52 0.0018 26.6 8.4 90 117-218 226-315 (368)
133 2k02_A Ferrous iron transport 56.5 9 0.00031 28.0 3.2 36 20-55 5-40 (87)
134 4eqf_A PEX5-related protein; a 56.3 37 0.0013 27.9 7.4 88 118-217 75-162 (365)
135 2crb_A Nuclear receptor bindin 56.2 8 0.00027 29.2 2.9 35 119-153 26-60 (97)
136 3bee_A Putative YFRE protein; 56.2 5.2 0.00018 28.5 1.9 58 89-152 30-87 (93)
137 1hh8_A P67PHOX, NCF-2, neutrop 56.1 26 0.0009 26.3 6.1 86 118-218 16-101 (213)
138 2b5a_A C.BCLI; helix-turn-heli 55.0 40 0.0014 21.8 6.7 65 4-102 5-69 (77)
139 3hym_B Cell division cycle pro 54.8 40 0.0014 26.6 7.2 96 114-216 199-298 (330)
140 1hxi_A PEX5, peroxisome target 54.2 52 0.0018 23.2 7.2 85 119-215 28-112 (121)
141 3urz_A Uncharacterized protein 54.2 42 0.0014 25.9 7.1 91 119-216 15-116 (208)
142 3cv0_A Peroxisome targeting si 53.9 53 0.0018 25.8 7.8 87 119-217 32-118 (327)
143 1v4r_A Transcriptional repress 53.7 9.5 0.00033 27.4 3.0 41 10-50 13-54 (102)
144 1nd9_A Translation initiation 53.7 19 0.00065 22.2 4.1 43 85-127 2-44 (49)
145 3cv0_A Peroxisome targeting si 53.6 46 0.0016 26.2 7.4 19 118-136 148-166 (327)
146 1fse_A GERE; helix-turn-helix 52.8 19 0.00065 23.5 4.2 32 18-51 15-46 (74)
147 3c57_A Two component transcrip 52.6 15 0.00051 26.2 3.9 33 17-51 30-62 (95)
148 1je8_A Nitrate/nitrite respons 52.4 18 0.00062 25.0 4.2 32 18-51 25-56 (82)
149 3tqn_A Transcriptional regulat 52.1 22 0.00075 26.1 4.9 44 11-54 12-56 (113)
150 2jpc_A SSRB; DNA binding prote 51.0 16 0.00055 23.2 3.5 30 19-50 3-32 (61)
151 1x3u_A Transcriptional regulat 50.4 21 0.00072 23.8 4.2 31 18-50 20-50 (79)
152 1fch_A Peroxisomal targeting s 49.9 60 0.002 26.3 7.7 89 119-217 192-280 (368)
153 4g26_A Pentatricopeptide repea 49.7 28 0.00096 32.1 6.2 97 112-218 109-205 (501)
154 1kt0_A FKBP51, 51 kDa FK506-bi 48.3 45 0.0015 29.7 7.2 100 110-216 270-379 (457)
155 2cfx_A HTH-type transcriptiona 48.1 23 0.00079 26.8 4.6 46 73-118 7-52 (144)
156 2b0l_A GTP-sensing transcripti 48.1 17 0.00058 26.7 3.7 39 13-52 23-64 (102)
157 3fp2_A TPR repeat-containing p 47.5 45 0.0015 28.7 6.9 30 189-218 463-492 (537)
158 2dbb_A Putative HTH-type trans 47.4 24 0.00081 26.7 4.5 46 73-118 11-56 (151)
159 2rnj_A Response regulator prot 47.4 18 0.0006 25.4 3.5 31 18-50 33-63 (91)
160 4ham_A LMO2241 protein; struct 47.3 87 0.003 23.4 8.7 45 79-123 31-76 (134)
161 2pl2_A Hypothetical conserved 47.2 61 0.0021 25.1 7.1 82 122-216 98-179 (217)
162 3fp2_A TPR repeat-containing p 47.0 82 0.0028 27.0 8.4 21 117-137 319-339 (537)
163 4abn_A Tetratricopeptide repea 46.9 41 0.0014 30.0 6.7 86 122-216 193-286 (474)
164 3by6_A Predicted transcription 46.3 26 0.00089 26.4 4.6 45 10-54 13-58 (126)
165 1w3b_A UDP-N-acetylglucosamine 46.1 58 0.002 27.0 7.1 19 118-136 247-265 (388)
166 4g1t_A Interferon-induced prot 45.5 89 0.0031 26.5 8.4 21 119-139 62-82 (472)
167 2htj_A P fimbrial regulatory p 45.0 19 0.00064 24.6 3.3 32 22-53 5-36 (81)
168 3mkl_A HTH-type transcriptiona 45.0 45 0.0015 24.2 5.6 64 30-99 22-85 (120)
169 2dbb_A Putative HTH-type trans 45.0 19 0.00065 27.3 3.6 38 19-56 11-48 (151)
170 4i17_A Hypothetical protein; T 45.0 85 0.0029 23.8 7.5 91 118-216 52-145 (228)
171 2cfx_A HTH-type transcriptiona 44.7 19 0.00066 27.2 3.6 36 20-55 8-43 (144)
172 3i4p_A Transcriptional regulat 44.7 25 0.00087 27.3 4.4 46 72-117 4-49 (162)
173 2cg4_A Regulatory protein ASNC 44.6 27 0.00094 26.5 4.5 45 74-118 11-55 (152)
174 1neq_A DNA-binding protein NER 44.0 22 0.00076 24.5 3.5 44 31-102 22-65 (74)
175 3ulq_B Transcriptional regulat 43.8 25 0.00086 25.0 3.9 32 18-51 33-64 (90)
176 2jt1_A PEFI protein; solution 43.4 24 0.00081 25.0 3.6 44 74-117 7-56 (77)
177 2b0l_A GTP-sensing transcripti 43.3 77 0.0026 23.0 6.7 46 74-119 31-77 (102)
178 1y7y_A C.AHDI; helix-turn-heli 43.2 62 0.0021 20.6 6.6 35 6-49 10-44 (74)
179 2p5v_A Transcriptional regulat 43.2 30 0.001 26.6 4.6 46 74-119 13-58 (162)
180 3vtx_A MAMA; tetratricopeptide 43.1 93 0.0032 22.6 8.3 28 190-217 109-136 (184)
181 2ek5_A Predicted transcription 42.9 33 0.0011 26.0 4.7 43 11-53 7-50 (129)
182 2cg4_A Regulatory protein ASNC 42.2 22 0.00075 27.0 3.6 37 20-56 11-47 (152)
183 3mkr_A Coatomer subunit epsilo 41.7 57 0.0019 27.0 6.4 22 116-137 138-159 (291)
184 2yhc_A BAMD, UPF0169 lipoprote 41.4 1.1E+02 0.0036 23.7 7.7 94 118-216 14-124 (225)
185 2ond_A Cleavage stimulation fa 40.9 97 0.0033 25.2 7.7 88 120-218 146-233 (308)
186 1i1g_A Transcriptional regulat 40.8 25 0.00084 26.1 3.6 36 20-55 7-42 (141)
187 3c7j_A Transcriptional regulat 40.5 31 0.0011 28.5 4.5 45 10-54 28-72 (237)
188 3neu_A LIN1836 protein; struct 40.4 38 0.0013 25.3 4.7 44 11-54 16-60 (125)
189 2ia0_A Putative HTH-type trans 40.2 35 0.0012 26.9 4.6 46 73-118 19-64 (171)
190 4ham_A LMO2241 protein; struct 40.2 42 0.0014 25.2 4.9 45 11-55 17-62 (134)
191 2p5v_A Transcriptional regulat 40.2 24 0.00084 27.1 3.6 36 20-55 13-48 (162)
192 3clo_A Transcriptional regulat 39.9 42 0.0014 27.8 5.3 32 18-51 201-232 (258)
193 1w3b_A UDP-N-acetylglucosamine 38.2 1.1E+02 0.0037 25.2 7.6 26 192-217 275-300 (388)
194 2vsy_A XCC0866; transferase, g 37.8 94 0.0032 27.9 7.6 25 192-216 129-156 (568)
195 1oyi_A Double-stranded RNA-bin 37.8 43 0.0015 24.2 4.3 42 75-117 21-62 (82)
196 4gyw_A UDP-N-acetylglucosamine 37.2 93 0.0032 30.2 7.9 87 118-216 53-139 (723)
197 4b4t_T 26S proteasome regulato 37.2 28 0.00095 30.1 3.8 38 8-45 176-213 (274)
198 2htj_A P fimbrial regulatory p 36.9 40 0.0014 22.9 4.0 34 84-117 13-46 (81)
199 4gyw_A UDP-N-acetylglucosamine 36.8 95 0.0033 30.1 7.9 92 114-217 83-174 (723)
200 1i1g_A Transcriptional regulat 36.7 30 0.001 25.7 3.5 45 74-118 7-51 (141)
201 2p7v_B Sigma-70, RNA polymeras 36.7 52 0.0018 21.4 4.4 28 28-55 22-49 (68)
202 2l0k_A Stage III sporulation p 36.7 27 0.00092 25.6 3.1 36 18-54 8-43 (93)
203 2e1c_A Putative HTH-type trans 36.5 30 0.001 27.4 3.6 37 19-55 29-65 (171)
204 3oio_A Transcriptional regulat 36.5 89 0.003 22.2 6.0 65 30-99 22-86 (113)
205 3oou_A LIN2118 protein; protei 36.3 75 0.0026 22.4 5.6 65 30-99 20-84 (108)
206 2cyy_A Putative HTH-type trans 36.3 31 0.0011 26.2 3.6 36 20-55 10-45 (151)
207 2hoe_A N-acetylglucosamine kin 36.0 17 0.0006 32.0 2.4 53 3-56 3-58 (380)
208 1s7o_A Hypothetical UPF0122 pr 35.9 40 0.0014 25.1 4.1 63 88-159 41-107 (113)
209 1oyi_A Double-stranded RNA-bin 35.1 40 0.0014 24.4 3.8 28 24-52 24-51 (82)
210 3hug_A RNA polymerase sigma fa 35.1 45 0.0016 23.1 4.1 42 10-54 35-76 (92)
211 3i4p_A Transcriptional regulat 35.0 42 0.0014 25.9 4.3 37 19-55 5-41 (162)
212 3f4m_A Tumor necrosis factor, 35.0 62 0.0021 26.4 5.3 107 53-173 4-139 (161)
213 3kz3_A Repressor protein CI; f 34.8 98 0.0034 20.4 5.7 50 30-104 24-73 (80)
214 2yhc_A BAMD, UPF0169 lipoprote 34.7 52 0.0018 25.5 4.8 96 116-217 104-213 (225)
215 2pg4_A Uncharacterized protein 34.7 26 0.00089 24.4 2.7 46 1-49 2-49 (95)
216 1p4w_A RCSB; solution structur 34.5 38 0.0013 24.6 3.7 33 18-52 38-70 (99)
217 3sxy_A Transcriptional regulat 34.5 46 0.0016 26.7 4.6 43 10-52 14-56 (218)
218 2e1c_A Putative HTH-type trans 34.4 35 0.0012 27.0 3.7 46 73-118 29-74 (171)
219 3mn2_A Probable ARAC family tr 33.9 1.2E+02 0.0041 21.2 7.2 66 30-99 17-83 (108)
220 1bl0_A Protein (multiple antib 33.6 1.4E+02 0.0047 21.8 6.9 65 30-99 26-90 (129)
221 1lmb_3 Protein (lambda repress 32.3 1.1E+02 0.0039 20.4 6.3 34 7-49 15-48 (92)
222 3ihu_A Transcriptional regulat 32.3 59 0.002 26.1 4.9 43 10-52 18-60 (222)
223 3qou_A Protein YBBN; thioredox 32.1 42 0.0014 27.5 4.0 26 191-216 222-247 (287)
224 1rz4_A Eukaryotic translation 31.9 35 0.0012 28.8 3.5 45 8-52 129-174 (226)
225 2w25_A Probable transcriptiona 31.7 41 0.0014 25.4 3.6 36 20-55 10-45 (150)
226 3gbg_A TCP pilus virulence reg 31.7 69 0.0023 26.2 5.3 64 30-99 184-247 (276)
227 2w25_A Probable transcriptiona 31.6 67 0.0023 24.1 4.8 47 74-120 10-56 (150)
228 3fym_A Putative uncharacterize 31.5 83 0.0028 23.5 5.3 64 10-103 4-69 (130)
229 2pn6_A ST1022, 150AA long hypo 31.3 54 0.0019 24.5 4.2 33 20-52 6-38 (150)
230 2cyy_A Putative HTH-type trans 31.0 43 0.0015 25.3 3.6 44 74-117 10-53 (151)
231 2pn6_A ST1022, 150AA long hypo 31.0 59 0.002 24.3 4.4 44 74-117 6-49 (150)
232 2ooe_A Cleavage stimulation fa 30.5 1.3E+02 0.0043 26.6 7.2 17 120-136 368-384 (530)
233 2k9s_A Arabinose operon regula 30.3 1.4E+02 0.0047 20.9 6.1 65 30-99 19-83 (107)
234 2hs5_A Putative transcriptiona 30.3 65 0.0022 26.5 4.9 43 10-52 30-72 (239)
235 2ia0_A Putative HTH-type trans 30.0 41 0.0014 26.5 3.4 39 20-58 20-58 (171)
236 2p5k_A Arginine repressor; DNA 29.3 60 0.002 20.6 3.6 37 17-53 5-46 (64)
237 2e2e_A Formate-dependent nitri 29.2 88 0.003 22.7 5.1 90 116-217 18-110 (177)
238 3cdh_A Transcriptional regulat 28.9 1.7E+02 0.0058 21.3 10.3 99 76-184 48-154 (155)
239 1j5y_A Transcriptional regulat 28.3 74 0.0025 25.2 4.7 43 12-54 16-59 (187)
240 2o8x_A Probable RNA polymerase 28.2 65 0.0022 20.5 3.7 26 29-54 29-54 (70)
241 1lj9_A Transcriptional regulat 28.2 1.6E+02 0.0056 21.0 9.9 44 77-120 35-78 (144)
242 3lsg_A Two-component response 28.1 1.5E+02 0.0051 20.5 6.6 64 31-99 19-82 (103)
243 2w2u_A Hypothetical P60 katani 27.9 52 0.0018 23.5 3.3 23 121-143 32-54 (83)
244 3vk0_A NHTF, transcriptional r 27.3 1.7E+02 0.0058 20.8 6.3 63 6-102 18-80 (114)
245 3f52_A CLP gene regulator (CLG 26.6 1.7E+02 0.0059 20.6 6.6 64 5-102 24-87 (117)
246 1r69_A Repressor protein CI; g 26.3 1.1E+02 0.0039 18.9 4.6 46 31-102 14-59 (69)
247 2kpj_A SOS-response transcript 25.9 1.3E+02 0.0045 20.5 5.2 48 30-102 21-68 (94)
248 2vsy_A XCC0866; transferase, g 25.9 2.5E+02 0.0085 25.0 8.3 86 119-216 34-119 (568)
249 3qww_A SET and MYND domain-con 25.8 88 0.003 28.4 5.3 73 107-179 339-413 (433)
250 2xi8_A Putative transcription 25.8 99 0.0034 19.0 4.2 19 31-49 14-32 (66)
251 1y0u_A Arsenical resistance op 25.0 96 0.0033 21.4 4.4 35 12-49 27-61 (96)
252 2r1j_L Repressor protein C2; p 24.9 1.1E+02 0.0036 19.0 4.2 47 31-102 18-64 (68)
253 2v6y_A AAA family ATPase, P60 24.8 67 0.0023 22.7 3.5 23 121-143 24-46 (83)
254 3mkr_A Coatomer subunit epsilo 24.8 1.8E+02 0.0063 23.8 6.8 16 118-133 111-126 (291)
255 3t5v_A Nuclear mRNA export pro 24.5 82 0.0028 27.8 4.7 46 4-49 192-243 (316)
256 2di3_A Bacterial regulatory pr 24.1 1E+02 0.0035 24.9 5.0 43 10-52 6-49 (239)
257 2wm9_A Dedicator of cytokinesi 24.0 1.3E+02 0.0045 27.3 6.1 109 109-220 12-140 (428)
258 2a6c_A Helix-turn-helix motif; 23.9 1.7E+02 0.0057 19.5 5.5 19 31-49 31-49 (83)
259 3ic7_A Putative transcriptiona 23.8 28 0.00095 26.2 1.3 44 11-54 14-58 (126)
260 4a5x_A MITD1, MIT domain-conta 23.8 2E+02 0.0068 20.4 6.0 23 121-143 29-51 (86)
261 3b7h_A Prophage LP1 protein 11 23.8 1.5E+02 0.0051 19.0 6.3 19 31-49 20-38 (78)
262 2ofy_A Putative XRE-family tra 23.8 1.2E+02 0.0041 20.1 4.6 17 33-49 29-45 (86)
263 4abn_A Tetratricopeptide repea 23.7 1.9E+02 0.0064 25.6 7.0 87 118-217 112-208 (474)
264 3t76_A VANU, transcriptional r 23.5 58 0.002 23.0 2.9 45 31-101 37-81 (88)
265 1tc3_C Protein (TC3 transposas 23.4 52 0.0018 18.9 2.3 23 30-52 20-42 (51)
266 4g1t_A Interferon-induced prot 23.4 95 0.0033 26.3 4.8 26 190-215 336-361 (472)
267 1p5q_A FKBP52, FK506-binding p 23.2 1.7E+02 0.0059 24.5 6.4 88 109-208 197-284 (336)
268 2qlz_A Transcription factor PF 23.1 1.6E+02 0.0055 24.7 6.1 27 29-55 176-202 (232)
269 1ku3_A Sigma factor SIGA; heli 22.9 64 0.0022 21.3 2.9 26 30-55 29-54 (73)
270 1q1h_A TFE, transcription fact 22.7 1.2E+02 0.004 21.4 4.5 38 81-118 29-66 (110)
271 3g5g_A Regulatory protein; tra 22.6 2E+02 0.007 20.1 8.4 64 6-103 25-88 (99)
272 1y9q_A Transcriptional regulat 22.5 1.7E+02 0.0057 22.6 5.8 36 5-49 7-42 (192)
273 3tqn_A Transcriptional regulat 22.3 1.5E+02 0.0052 21.4 5.1 45 79-123 26-71 (113)
274 3jth_A Transcription activator 22.0 1.3E+02 0.0044 20.7 4.5 32 16-49 23-54 (98)
275 3omt_A Uncharacterized protein 21.8 96 0.0033 20.0 3.6 18 84-101 49-66 (73)
276 1hw1_A FADR, fatty acid metabo 21.8 1.1E+02 0.0038 24.5 4.7 46 10-55 9-55 (239)
277 2ewt_A BLDD, putative DNA-bind 21.7 1.6E+02 0.0054 18.5 6.4 32 8-48 7-40 (71)
278 2ooe_A Cleavage stimulation fa 21.6 2.6E+02 0.0089 24.6 7.5 45 168-218 411-455 (530)
279 2nyx_A Probable transcriptiona 21.5 2.6E+02 0.0088 20.9 8.1 43 78-120 52-94 (168)
280 2kc7_A BFR218_protein; tetratr 21.4 1E+02 0.0036 19.9 3.8 19 119-137 46-64 (99)
281 1xsv_A Hypothetical UPF0122 pr 21.1 1.1E+02 0.0037 22.5 4.1 22 87-108 43-64 (113)
282 1zug_A Phage 434 CRO protein; 21.0 1.5E+02 0.0052 18.4 4.4 46 31-102 16-61 (71)
283 4a0z_A Transcription factor FA 20.8 1.1E+02 0.0038 24.8 4.5 39 13-51 8-46 (190)
284 2l8n_A Transcriptional repress 20.6 48 0.0016 22.5 1.9 54 27-102 5-58 (67)
285 1bia_A BIRA bifunctional prote 20.5 99 0.0034 26.8 4.3 37 18-54 6-42 (321)
286 3qq6_A HTH-type transcriptiona 20.4 1.3E+02 0.0045 19.9 4.2 48 31-102 23-70 (78)
287 1or7_A Sigma-24, RNA polymeras 20.2 1.4E+02 0.0047 22.6 4.7 35 18-55 146-180 (194)
No 1
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.29 E-value=9.8e-13 Score=122.11 Aligned_cols=112 Identities=15% Similarity=0.153 Sum_probs=101.3
Q ss_pred HHHHhhccceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCC-
Q psy3486 106 LVSLILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKND- 184 (222)
Q Consensus 106 L~~~iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~Ne- 184 (222)
....++-+..+...++|++++..+..+++.+|+ +.+++++++|.|.+++|+++..++. .+..|++++++++.++|+
T Consensus 17 ~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kak~~k~v~~l~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~ 93 (394)
T 3txn_A 17 IKEQGILQQGELYKQEGKAKELADLIKVTRPFL-SSISKAKAAKLVRSLVDMFLDMDAG--TGIEVQLCKDCIEWAKQEK 93 (394)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGG-GGSCHHHHHHHHHHHHHHHTTSCCC--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHHHHH
Confidence 456667778888999999999999999999999 8899999999999999999988765 488899999999999888
Q ss_pred ceeeecch--hhhhhhhchhhHhHHHHHHHHHHHhhhc
Q psy3486 185 RLWFKTNT--KLGKLYFDREDFNKLSRILKQLHQSCQM 220 (222)
Q Consensus 185 RLWfKtnl--KlakL~ld~~ey~~l~~~l~~L~~~c~~ 220 (222)
|+|+|+++ |||++|+++|+|+++.++++++++.|+.
T Consensus 94 r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~ 131 (394)
T 3txn_A 94 RTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKK 131 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 66669766 9999999999999999999999999976
No 2
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.25 E-value=4.5e-12 Score=117.69 Aligned_cols=72 Identities=19% Similarity=0.307 Sum_probs=68.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhh
Q psy3486 1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIET 72 (222)
Q Consensus 1 ~~D~~I~~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~ 72 (222)
+.|||++.|+..|+++||+++|.++++||+||++++||+.||+|+++||..|++||.++.|.|.+||-|-.+
T Consensus 286 ~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv 357 (394)
T 3txn_A 286 AEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVL 357 (394)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEE
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEE
Confidence 469999999999999999999999999999999999999999999999999999999999999999865433
No 3
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.17 E-value=6.5e-12 Score=116.06 Aligned_cols=69 Identities=13% Similarity=0.282 Sum_probs=66.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhh
Q psy3486 1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLN 69 (222)
Q Consensus 1 ~~D~~I~~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~ 69 (222)
..|+|++.|++.|+++||++++.++++||++|++++||+.||+|++.||..|++||.+++|.|-+|+.|
T Consensus 317 ~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~ 385 (429)
T 4b4t_R 317 IPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVN 385 (429)
T ss_dssp TTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTT
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999854
No 4
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.98 E-value=5e-10 Score=97.53 Aligned_cols=68 Identities=25% Similarity=0.308 Sum_probs=65.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhh
Q psy3486 1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQL 68 (222)
Q Consensus 1 ~~D~~I~~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~ 68 (222)
..|++++.|++.++++++++++..+++||+||.+++||+.||+|+++||..|++||.++.+.|.+||.
T Consensus 326 ~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~ 393 (434)
T 4b4t_Q 326 MGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQG 393 (434)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccc
Confidence 36999999999999999999999999999999999999999999999999999999999999999964
No 5
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=98.94 E-value=1.1e-10 Score=87.16 Aligned_cols=62 Identities=16% Similarity=0.068 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhh
Q psy3486 8 EHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLN 69 (222)
Q Consensus 8 ~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~ 69 (222)
.|...|.+.+.++||..+.+||++|+++++|+.|++|+++||+.+++||.++.|.+-+||.+
T Consensus 7 ~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~ 68 (84)
T 1ufm_A 7 GGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQID 68 (84)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTT
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCC
Confidence 36677889999999999999999999999999999999999999999999999999999854
No 6
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.90 E-value=4.6e-10 Score=104.46 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhh
Q psy3486 7 REHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQL 68 (222)
Q Consensus 7 ~~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~ 68 (222)
..|+..|+++++++||..+++||+||++++||+.||+|.++||.++++||.++.+.|-+||.
T Consensus 335 ~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~ 396 (445)
T 4b4t_P 335 KHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRP 396 (445)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 78999999999999999999999999999999999999999999999999999999999985
No 7
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=98.90 E-value=1.4e-09 Score=81.13 Aligned_cols=61 Identities=21% Similarity=0.311 Sum_probs=54.7
Q ss_pred hhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeEeeccc
Q psy3486 60 HIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123 (222)
Q Consensus 60 hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~idqg~ 123 (222)
|..-+.+ ...++||.++.+||++|.++++|+.+++|+++||+.++.||.++.+.|+|||.+
T Consensus 8 ~~~~L~~---~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~ 68 (84)
T 1ufm_A 8 GSSILDR---AVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQID 68 (84)
T ss_dssp SSCCCCH---HHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTT
T ss_pred cHHHHHH---HHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCC
Confidence 4444443 568899999999999999999999999999999999999999999999999964
No 8
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.4e-09 Score=100.47 Aligned_cols=69 Identities=17% Similarity=0.294 Sum_probs=65.5
Q ss_pred hhhhhHhhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeEeeccc
Q psy3486 52 LIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123 (222)
Q Consensus 52 lsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~idqg~ 123 (222)
..|+|+..|...+++ .+.+.|+.++++|||+|.++++|+.+|+|++.+|..++.+|.++.+.|+||+++
T Consensus 317 ~~d~~l~~h~~~l~~---~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~ 385 (429)
T 4b4t_R 317 IPCKYLNRHADFFVR---EMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVN 385 (429)
T ss_dssp TTCTTSTTTHHHHHH---HHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTT
T ss_pred ccCHHHHHHHHHHHH---HHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCC
Confidence 468999999999997 568899999999999999999999999999999999999999999999999976
No 9
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.5e-08 Score=88.08 Aligned_cols=114 Identities=10% Similarity=0.104 Sum_probs=103.6
Q ss_pred HHHHhhccceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHHhcCCCC
Q psy3486 106 LVSLILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSK-NMELLQDFYETTLEALKDAKND 184 (222)
Q Consensus 106 L~~~iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~-~~~~l~~fYe~TL~~l~~~~Ne 184 (222)
....++.+...+..++|+|++|+++|++++++. +.+++++.++.+.++++.+.... +.+-..++|+..++.....+++
T Consensus 53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (434)
T 4b4t_Q 53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYM-MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV 131 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH-HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 456677888889999999999999999999977 78999999999999999998654 5777888999999999999999
Q ss_pred ceeeecchhhhhhhhchhhHhHHHHHHHHHHHhhhc
Q psy3486 185 RLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQM 220 (222)
Q Consensus 185 RLWfKtnlKlakL~ld~~ey~~l~~~l~~L~~~c~~ 220 (222)
.+|.++..+||++|++.|+|+++.+.+++++..|..
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998865
No 10
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.71 E-value=5.8e-09 Score=97.04 Aligned_cols=63 Identities=14% Similarity=0.271 Sum_probs=57.2
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeEeeccc
Q psy3486 58 RIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123 (222)
Q Consensus 58 ~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~idqg~ 123 (222)
..|+..+.+ ...++||.++++|||+|.++++|+.+|+|+++||..++.||.++.+.|+|||++
T Consensus 335 ~~~~~~L~~---~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~ 397 (445)
T 4b4t_P 335 KHHWEDLQK---RVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPA 397 (445)
T ss_dssp SHHHHHHHH---HHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTT
T ss_pred hHHHHHHHH---HHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 445566664 578999999999999999999999999999999999999999999999999975
No 11
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=97.88 E-value=1.3e-05 Score=67.73 Aligned_cols=73 Identities=21% Similarity=0.298 Sum_probs=55.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhc------ccccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhh
Q psy3486 3 DPFIREHIEDLLRNIRTQVLIKLIK------PYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVL 76 (222)
Q Consensus 3 D~~I~~hi~~L~~~lr~q~Ll~li~------PYsri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l 76 (222)
|.|++.++-.+.+.+|..++.++++ ||+||.++.|+.+++++.
T Consensus 107 ~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~------------------------------- 155 (203)
T 3t5x_A 107 AFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQ------------------------------- 155 (203)
T ss_dssp HHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTT-------------------------------
T ss_pred HHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcC-------------------------------
Confidence 5677777777778888877777766 677777777666666420
Q ss_pred hhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeEeeccc
Q psy3486 77 IKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123 (222)
Q Consensus 77 ~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~idqg~ 123 (222)
.-+++.++||..++.+|.|+.|+|.|+..+
T Consensus 156 -----------------~~~~~~~evE~ila~lI~~G~Ikg~I~~~~ 185 (203)
T 3t5x_A 156 -----------------VEDVDIDEVQCILANLIYMGHVKGYISHQH 185 (203)
T ss_dssp -----------------CTTCCHHHHHHHHHHHHHHTSSCEEEETTT
T ss_pred -----------------CCCCCHHHHHHHHHHHHHcCceEEEEcccc
Confidence 012478999999999999999999999764
No 12
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=9.5e-05 Score=67.73 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhh--cccccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhh
Q psy3486 3 DPFIREHIEDLLRNIRTQVLIKLI--KPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNI 70 (222)
Q Consensus 3 D~~I~~hi~~L~~~lr~q~Ll~li--~PYsri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~ 70 (222)
+|++..|...+++.+|..+++.++ .||.+|.++.||+.+|+|.++||.-+.++|-.+-+.|-+||.+.
T Consensus 277 ~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~ 346 (393)
T 4b4t_O 277 IPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNE 346 (393)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTT
T ss_pred CcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 588999999999999999999988 56889999999999999999999999999999999999998543
No 13
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.01 E-value=0.0045 Score=51.79 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=75.3
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcC-CCCceeeecchhhhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA-KNDRLWFKTNTKLGK 196 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~-~NeRLWfKtnlKlak 196 (222)
...+|+|++|+++|++.+....+.-.....-.+.+++-..+....+.+--...|+..++.++.. .+...+..+...+|.
T Consensus 125 ~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~ 204 (293)
T 3u3w_A 125 VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAK 204 (293)
T ss_dssp HTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 4567899999999999999542221111112245555555555567777778888888877765 677788889999999
Q ss_pred hhhchhhHhHHHHHHHHHHHhhh
Q psy3486 197 LYFDREDFNKLSRILKQLHQSCQ 219 (222)
Q Consensus 197 L~ld~~ey~~l~~~l~~L~~~c~ 219 (222)
+|+..|+|+++...+++..+.|.
T Consensus 205 ~y~~~~~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 205 ALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999998888777664
No 14
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00098 Score=60.97 Aligned_cols=68 Identities=25% Similarity=0.363 Sum_probs=55.2
Q ss_pred hhhhHhhhhhhhhhhhhhhhhhhhhhhc--cccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeEeeccc
Q psy3486 53 IKPYTRIHIPFISRQLNIETSDVLIKLI--KPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123 (222)
Q Consensus 53 sd~il~~hl~~l~d~~~~~~~~~l~~ii--epys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~idqg~ 123 (222)
..|++..|...+.+.+.. ..+..++ .||.+|..+.||+.+|+|+++||..++.+|.++.|+|+|||.+
T Consensus 276 ~~~~l~~~~~~l~~kirl---l~l~~l~~~~~~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~ 345 (393)
T 4b4t_O 276 KIPILAQHESFLRQKICL---MTLIETVFVKNIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVN 345 (393)
T ss_dssp HSHHHHHHHHHHHHHHHH---HHHHHHHCSSSCCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTT
T ss_pred hCcchhhhHHHHHHHHHH---HHHHHHhccCCCCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 347777777777764322 3455555 5688889999999999999999999999999999999999965
No 15
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0031 Score=59.45 Aligned_cols=77 Identities=21% Similarity=0.196 Sum_probs=65.8
Q ss_pred HHHHhhhhhhHhhhh-hhhhhhhhhhhhhhhhh-----hcccc--ccccHhHHHHHhC---------------------C
Q psy3486 47 DVLIKLIKPYTRIHI-PFISRQLNIETSDVLIK-----LIKPY--TRIHIPFISRQLN---------------------I 97 (222)
Q Consensus 47 ~ve~klsd~il~~hl-~~l~d~~~~~~~~~l~~-----iiepy--s~v~i~~ia~~l~---------------------l 97 (222)
++-.+-.+.|++.++ .-++..+....-.|++| .+-|| |+|.++.|+..++ +
T Consensus 316 ~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~ 395 (455)
T 3t5v_B 316 LWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIH 395 (455)
T ss_dssp HHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSC
T ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCccccccccccccccccCC
Confidence 344456778999999 88888887777788888 36889 9999999999998 4
Q ss_pred ChHHHHHHHHHHhhccceeeEeeccc
Q psy3486 98 ETSDVESLLVSLILDNTVRGRIDQSN 123 (222)
Q Consensus 98 ~~~~VE~~L~~~iLdq~ik~~idqg~ 123 (222)
+.++||..++.+|.++.|+|.|+.++
T Consensus 396 ~~devEcIlA~LI~~G~IkGyIsh~~ 421 (455)
T 3t5v_B 396 SPKNVENVLVTLINLGLLRANCFPQL 421 (455)
T ss_dssp CSSCHHHHHHHHHHHTSCCEEEETTT
T ss_pred CHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 78899999999999999999998754
No 16
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0017 Score=62.42 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=65.4
Q ss_pred HHHHhhhhhhHhhhhhhhhhhh-hhhhhhhhhhhccccccccHhHHHHHhCCC-hHHHHHHHHHHhhccceeeEeeccc
Q psy3486 47 DVLIKLIKPYTRIHIPFISRQL-NIETSDVLIKLIKPYTRIHIPFISRQLNIE-TSDVESLLVSLILDNTVRGRIDQSN 123 (222)
Q Consensus 47 ~ve~klsd~il~~hl~~l~d~~-~~~~~~~l~~iiepys~v~i~~ia~~l~l~-~~~VE~~L~~~iLdq~ik~~idqg~ 123 (222)
.+-.+-.+-|.+....+++.+| .+.+..++.++-.+||+|.++.||..++++ ++++|..++.||-|+.|+|.|++.+
T Consensus 362 ~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~ 440 (523)
T 4b4t_S 362 STITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHED 440 (523)
T ss_dssp HHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTT
T ss_pred HHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCC
Confidence 3444667889999999998764 355667889999999999999999999997 5789999999999999999999753
No 17
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.20 E-value=0.01 Score=42.58 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=73.6
Q ss_pred hhccceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeee
Q psy3486 110 ILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFK 189 (222)
Q Consensus 110 iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfK 189 (222)
++-..-.....+|+|++|+++|++.+......-.....-.+..++-.......+.+--.+.|+..++.....++......
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 33444455567899999999999999976432111111122222222222334555666777777777776666666667
Q ss_pred cchhhhhhhhchhhHhHHHHHHHHHHHhhhc
Q psy3486 190 TNTKLGKLYFDREDFNKLSRILKQLHQSCQM 220 (222)
Q Consensus 190 tnlKlakL~ld~~ey~~l~~~l~~L~~~c~~ 220 (222)
+...+|.+++..|++++..+.+++..+.++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999988887776643
No 18
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.39 E-value=0.066 Score=38.14 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=71.6
Q ss_pred eeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhh
Q psy3486 116 RGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLG 195 (222)
Q Consensus 116 k~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKla 195 (222)
...+.+|+|++|+++|++.+......-.....-.+.+.+-..+....+.+--.++|+..++.....++......+...+|
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 96 (164)
T 3ro3_A 17 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 96 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 34456799999999999999977432111111123333333333345666667788888887777666666677788899
Q ss_pred hhhhchhhHhHHHHHHHHHHHhhh
Q psy3486 196 KLYFDREDFNKLSRILKQLHQSCQ 219 (222)
Q Consensus 196 kL~ld~~ey~~l~~~l~~L~~~c~ 219 (222)
.++...|+|++....+++..+.+.
T Consensus 97 ~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 97 NTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999988887766553
No 19
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=95.39 E-value=0.076 Score=44.18 Aligned_cols=133 Identities=11% Similarity=0.045 Sum_probs=78.4
Q ss_pred ccccHhHHHHHhCCChHHHHHH------HHHHhhccceeeEeeccchHHHHHHHHHHHhhhhhccCcccc--HHHHHHHH
Q psy3486 84 TRIHIPFISRQLNIETSDVESL------LVSLILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYS--EKSINSIL 155 (222)
Q Consensus 84 s~v~i~~ia~~l~l~~~~VE~~------L~~~iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNys--EksIn~iL 155 (222)
|.-.+..||+.+|+|++..-.. -....+.+.+...+.+|+|++|.+.|++.+.-. +. ..+.. -...+.+-
T Consensus 45 ~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-~~-~~~~~~~~~~~~~l~ 122 (293)
T 3u3w_A 45 SMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EY-HPEFQQFLQWQYYVA 122 (293)
T ss_dssp CHHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CC-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-cC-ChHHHHHHHHHHHHH
Confidence 4445667888999888654210 112223445666788999999999999998832 11 11100 01122333
Q ss_pred HHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 156 DYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 156 d~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
.++....+.+---+.|+..++......+......+...+|.+|.+.|+|++.....++..+.+
T Consensus 123 ~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 185 (293)
T 3u3w_A 123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL 185 (293)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 333333344444556666665322333322224467789999999999999988877766543
No 20
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=94.95 E-value=0.048 Score=45.43 Aligned_cols=130 Identities=12% Similarity=0.083 Sum_probs=72.2
Q ss_pred cHhHHHHHhCCChHHHHHHH------HHHhhccceeeEeeccchHHHHHHHHHHHhhhhhccCccccH--HHHHHHHHHh
Q psy3486 87 HIPFISRQLNIETSDVESLL------VSLILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSE--KSINSILDYI 158 (222)
Q Consensus 87 ~i~~ia~~l~l~~~~VE~~L------~~~iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysE--ksIn~iLd~v 158 (222)
.+..||+.+|++++..-... ....+...+...+.+|+|++|++.|++.+... +... .... .....+-.++
T Consensus 48 ~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~-~~~~~~~~~~~~~~~~ 125 (293)
T 2qfc_A 48 ILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHP-EFQQFLQWQYYVAAYV 125 (293)
T ss_dssp HHHHHTTTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHHhccccccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCCh-hHHHHHHHHHHHHHHH
Confidence 35567777777765443211 11123334556678999999999999998843 2211 1100 1112222222
Q ss_pred hcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 159 STSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 159 s~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
....+.+--.+.|+..++......+...-..+...+|.+|.+.|+|+++....++..+.+
T Consensus 126 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~ 185 (293)
T 2qfc_A 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL 185 (293)
T ss_dssp HTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 223344333444444443322222222225567789999999999999988887766443
No 21
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=94.55 E-value=0.099 Score=43.47 Aligned_cols=102 Identities=12% Similarity=0.122 Sum_probs=70.2
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCC-Cceeeecchhhhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKN-DRLWFKTNTKLGK 196 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~N-eRLWfKtnlKlak 196 (222)
...+|+|++|+++|++.+............-.+.+++=..+....+.+--...|+..++..+..++ ..+...+...+|.
T Consensus 125 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~ 204 (293)
T 2qfc_A 125 VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAK 204 (293)
T ss_dssp HHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHH
Confidence 456789999999999999865332221111234455544444455666677788888876665543 3334467889999
Q ss_pred hhhchhhHhHHHHHHHHHHHhhh
Q psy3486 197 LYFDREDFNKLSRILKQLHQSCQ 219 (222)
Q Consensus 197 L~ld~~ey~~l~~~l~~L~~~c~ 219 (222)
+|+..|+|+++....++..+.|.
T Consensus 205 ~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 205 ALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999988887766553
No 22
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=94.11 E-value=0.058 Score=43.23 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=68.5
Q ss_pred hhccceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeee
Q psy3486 110 ILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFK 189 (222)
Q Consensus 110 iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfK 189 (222)
++-........+|++++|+++|++.+......-.......+...+-..+....+.+--.+.|+..++.....++......
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 33344445567788888888888888755322111222233333333333344555556677777776666665555566
Q ss_pred cchhhhhhhhchhhHhHHHHHHHHHHHhhh
Q psy3486 190 TNTKLGKLYFDREDFNKLSRILKQLHQSCQ 219 (222)
Q Consensus 190 tnlKlakL~ld~~ey~~l~~~l~~L~~~c~ 219 (222)
+...+|.+|...|++++....+++..+.++
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 777899999999999999888887766554
No 23
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=93.83 E-value=0.076 Score=42.51 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=73.0
Q ss_pred hhccceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeee
Q psy3486 110 ILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFK 189 (222)
Q Consensus 110 iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfK 189 (222)
++-..-.....+|++++|+++|++.+......-.....-.+...+-..+....+.+--.+.|+..++.....++......
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 34444455667899999999999999876332111111223333333333334555566777777777776666666677
Q ss_pred cchhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 190 TNTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 190 tnlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
+...+|.+++..|+|++....+++..+..
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 78889999999999999998887765543
No 24
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=93.69 E-value=0.1 Score=44.27 Aligned_cols=109 Identities=11% Similarity=0.054 Sum_probs=72.1
Q ss_pred hhccceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeee
Q psy3486 110 ILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFK 189 (222)
Q Consensus 110 iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfK 189 (222)
++...-...+.+|+|++|+++|++.+......-.....-.+.+.+-..+....+.+--.+.|+..++.....++......
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34444555677899999999999999866332221222223344444343445666666777777776666666555567
Q ss_pred cchhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 190 TNTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 190 tnlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
+...+|.+|...|+|++....+++..+.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 77889999999999998888877766554
No 25
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=93.60 E-value=0.097 Score=43.73 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=70.8
Q ss_pred hhccceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeee
Q psy3486 110 ILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFK 189 (222)
Q Consensus 110 iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfK 189 (222)
++-..-...+.+|++++|+++|++.+......-.......+.+.+-..+....+.+--.+.|+..++.....++......
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 34444455667899999999999998866322122222233334433333444556666777777776666655554566
Q ss_pred cchhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 190 TNTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 190 tnlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
+...+|.+|...|+|++.....++..+.+
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 77789999999999999988877765544
No 26
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=93.44 E-value=0.42 Score=36.06 Aligned_cols=102 Identities=7% Similarity=0.012 Sum_probs=63.2
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCc-eeeecchhhh
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDR-LWFKTNTKLG 195 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeR-LWfKtnlKla 195 (222)
....+|+|++|+++|++.+......-.....-.+.+++-..+....+.+--.+.|+..++..+..+++. ....+...+|
T Consensus 35 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 114 (203)
T 3gw4_A 35 VYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVA 114 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 345678899999999998886633211111222333333323233455556667777777766555333 4455677788
Q ss_pred hhhhchhhHhHHHHHHHHHHHhh
Q psy3486 196 KLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 196 kL~ld~~ey~~l~~~l~~L~~~c 218 (222)
.++...|+|++....+++..+.+
T Consensus 115 ~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 115 TVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHH
Confidence 88888888888887777665544
No 27
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=93.36 E-value=0.28 Score=41.87 Aligned_cols=104 Identities=7% Similarity=0.103 Sum_probs=71.5
Q ss_pred eeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhh
Q psy3486 116 RGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLG 195 (222)
Q Consensus 116 k~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKla 195 (222)
.....+|+|++|+++|++.+......-.....-.+.+++=..+....+.+--.+.|+..++..+..++..-...+...+|
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 44567899999999999999976432111122223333333333345666666777777776666665344478889999
Q ss_pred hhhhchhhHhHHHHHHHHHHHhhh
Q psy3486 196 KLYFDREDFNKLSRILKQLHQSCQ 219 (222)
Q Consensus 196 kL~ld~~ey~~l~~~l~~L~~~c~ 219 (222)
.+++..|+|++....+++..+.|.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999988888776654
No 28
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=93.32 E-value=0.61 Score=39.89 Aligned_cols=102 Identities=11% Similarity=0.033 Sum_probs=65.8
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCC-Cceeeecchhhhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKN-DRLWFKTNTKLGK 196 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~N-eRLWfKtnlKlak 196 (222)
.+.+|+|++|+++|++.+...+..-.....-.+.+++=..+....+.+.-...|+..++......+ ..-...+...+|.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 457899999999999999976332111112223333333333344556666677777776665543 3334566778999
Q ss_pred hhhchhhHhHHHHHHHHHHHhhh
Q psy3486 197 LYFDREDFNKLSRILKQLHQSCQ 219 (222)
Q Consensus 197 L~ld~~ey~~l~~~l~~L~~~c~ 219 (222)
++.+.|+|++..+..++..+.++
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~ 213 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAM 213 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999998887776665543
No 29
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=93.05 E-value=0.23 Score=42.60 Aligned_cols=104 Identities=11% Similarity=0.080 Sum_probs=70.1
Q ss_pred eeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhh
Q psy3486 115 VRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKL 194 (222)
Q Consensus 115 ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKl 194 (222)
-....++|+|++|+++|++.+...+..-.....-.+.+++=..+....+.+--.+.|+..++..+..++... ..+...+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHH
Confidence 334567899999999999999976332122222233333333232334555556667777766655554444 8889999
Q ss_pred hhhhhchhhHhHHHHHHHHHHHhhh
Q psy3486 195 GKLYFDREDFNKLSRILKQLHQSCQ 219 (222)
Q Consensus 195 akL~ld~~ey~~l~~~l~~L~~~c~ 219 (222)
|.+++..|+|++....+++..+.|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999888777664
No 30
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=92.87 E-value=0.13 Score=43.58 Aligned_cols=110 Identities=12% Similarity=0.051 Sum_probs=73.6
Q ss_pred hhccceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeee
Q psy3486 110 ILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFK 189 (222)
Q Consensus 110 iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfK 189 (222)
++-..-.....+|++++|+++|++.+......-.......+...+-..+....+.+--.+.|+..++.....++......
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 44455556778899999999999999966322111122233333333333344555566677777776666555455556
Q ss_pred cchhhhhhhhchhhHhHHHHHHHHHHHhhh
Q psy3486 190 TNTKLGKLYFDREDFNKLSRILKQLHQSCQ 219 (222)
Q Consensus 190 tnlKlakL~ld~~ey~~l~~~l~~L~~~c~ 219 (222)
+...+|.+|...|+|++....+++..+.++
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 778899999999999999988887766553
No 31
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=92.81 E-value=0.14 Score=42.70 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=73.5
Q ss_pred hccceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeec
Q psy3486 111 LDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKT 190 (222)
Q Consensus 111 Ldq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKt 190 (222)
+-..-.....+|+|++|+++|++.+......-.....-.+.+++-..+....+.+--.+.|+..++.....++......+
T Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 269 (406)
T 3sf4_A 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 269 (406)
T ss_dssp HHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHH
Confidence 34444556678999999999999999763321111112233333333333456666677788888777776666666778
Q ss_pred chhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 191 NTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 191 nlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
...+|.+|...|+|++....+++..+.+
T Consensus 270 ~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 270 CYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 8899999999999999998887766543
No 32
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=92.54 E-value=0.15 Score=42.98 Aligned_cols=106 Identities=8% Similarity=0.088 Sum_probs=71.6
Q ss_pred hccceeeEeeccchHHHHHHHHHHHhhhhhccCc-cccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeee
Q psy3486 111 LDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTR-NYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFK 189 (222)
Q Consensus 111 Ldq~ik~~idqg~y~~~l~~y~~LLtyiksaVtr-NysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfK 189 (222)
+.+.-.....+|+|++|+++|++-+..- ..... ...-.+.+++=..+.. .+.+--.+.|+..++.....++.+....
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~-~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVMY-VENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3334444556799999999999998854 22221 1223455555555545 5666666778888877766665555667
Q ss_pred cchhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 190 TNTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 190 tnlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
+..++|.+|...|+|++.....++..+.+
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMY 185 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 78889999999999999887777665543
No 33
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=92.52 E-value=0.26 Score=42.16 Aligned_cols=105 Identities=10% Similarity=-0.034 Sum_probs=72.7
Q ss_pred ceeeEeeccchHHHHHHHHHHHhhhhhccC-ccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecch
Q psy3486 114 TVRGRIDQSNYKEMMSRYKQLLLYIKSAVT-RNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNT 192 (222)
Q Consensus 114 ~ik~~idqg~y~~~l~~y~~LLtyiksaVt-rNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnl 192 (222)
.-.....+|+|++|+++|++-+......-. ....-.+.+++=..+....+.+--.+.|+..++.....++.+....+..
T Consensus 149 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 228 (383)
T 3ulq_A 149 MSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY 228 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 334455679999999999999986633211 1111123333333333345666667788888887777777888888888
Q ss_pred hhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 193 KLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 193 KlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
.+|.+|...|+|++....+++..+.+
T Consensus 229 ~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 229 NIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998887776644
No 34
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.15 E-value=0.44 Score=39.74 Aligned_cols=108 Identities=12% Similarity=0.019 Sum_probs=72.8
Q ss_pred hhccceeeEeeccchHHHHHHHHHHHhhhhhccCcc-ccHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHHhcCCCCcee
Q psy3486 110 ILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRN-YSEKSINSILDYISTS-KNMELLQDFYETTLEALKDAKNDRLW 187 (222)
Q Consensus 110 iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrN-ysEksIn~iLd~vs~s-~~~~~l~~fYe~TL~~l~~~~NeRLW 187 (222)
++.+.-.....+|+|++|+++|++-+..- +...+. -...+.+++=..+... .+.+--...|+..++.....++....
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIF-THRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 33444445567899999999999999955 433221 1234455555545443 55665667788877766655444333
Q ss_pred eecchhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 188 FKTNTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 188 fKtnlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
..+..++|.+++..|+|++.....++..+.+
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5667889999999999999998888776654
No 35
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=91.96 E-value=0.69 Score=36.88 Aligned_cols=105 Identities=17% Similarity=0.223 Sum_probs=71.2
Q ss_pred ceeeEeeccchHHHHHHHHHHHhhhhhccCc--cccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcC--CCCceeee
Q psy3486 114 TVRGRIDQSNYKEMMSRYKQLLLYIKSAVTR--NYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA--KNDRLWFK 189 (222)
Q Consensus 114 ~ik~~idqg~y~~~l~~y~~LLtyiksaVtr--NysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~--~NeRLWfK 189 (222)
.-.....+|+|++|+++|++.+......... .....+.+.+-..+....+.+--.++|+..++..+.. ++......
T Consensus 117 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 196 (311)
T 3nf1_A 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAK 196 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3445567899999999999999866332111 1222334444444434456666666777777765544 34556667
Q ss_pred cchhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 190 TNTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 190 tnlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
+...+|.+|+..|+|++....+++..+.+
T Consensus 197 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 197 TKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 78889999999999999999888877654
No 36
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.90 E-value=0.085 Score=50.68 Aligned_cols=61 Identities=15% Similarity=0.087 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccHhHHHHHhccc-hhHHHHhhhhhhHhhhhhhhhhhhh
Q psy3486 9 HIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIE-TSDVLIKLIKPYTRIHIPFISRQLN 69 (222)
Q Consensus 9 hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~-~~~ve~klsd~il~~hl~~l~d~~~ 69 (222)
-+..|..++...++.++..+|++|.++.||..+|++ .+++|.-+..||-+..|.|.+|+-+
T Consensus 379 LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~ 440 (523)
T 4b4t_S 379 LCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHED 440 (523)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCC
Confidence 345566778888899999999999999999999996 6789999999999999999998643
No 37
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=91.85 E-value=0.71 Score=36.84 Aligned_cols=106 Identities=12% Similarity=0.120 Sum_probs=71.2
Q ss_pred ceeeEeeccchHHHHHHHHHHHhhhhhccCc--cccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcC--CCCceeee
Q psy3486 114 TVRGRIDQSNYKEMMSRYKQLLLYIKSAVTR--NYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA--KNDRLWFK 189 (222)
Q Consensus 114 ~ik~~idqg~y~~~l~~y~~LLtyiksaVtr--NysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~--~NeRLWfK 189 (222)
.-.....+|++++|+++|++.+......... .....+.+.+-..+....+.+--.+.|+..++..+.. ++......
T Consensus 75 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 75 LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 3344567899999999999999976433221 2223344444444444455555566666666655433 44555667
Q ss_pred cchhhhhhhhchhhHhHHHHHHHHHHHhhh
Q psy3486 190 TNTKLGKLYFDREDFNKLSRILKQLHQSCQ 219 (222)
Q Consensus 190 tnlKlakL~ld~~ey~~l~~~l~~L~~~c~ 219 (222)
+...+|.++...|+|++....+++..+.++
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 778899999999999999999888877653
No 38
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=91.75 E-value=0.78 Score=35.79 Aligned_cols=106 Identities=12% Similarity=0.060 Sum_probs=70.8
Q ss_pred cceeeEeeccchHHHHHHHHHHHhhhhhccC--ccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcC--CCCceee
Q psy3486 113 NTVRGRIDQSNYKEMMSRYKQLLLYIKSAVT--RNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA--KNDRLWF 188 (222)
Q Consensus 113 q~ik~~idqg~y~~~l~~y~~LLtyiksaVt--rNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~--~NeRLWf 188 (222)
..-.....+|+|++|+++|++.+........ ....-.+.+.+-..+....+.+--.+.|+..++..+.. .+.....
T Consensus 48 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 127 (283)
T 3edt_B 48 ILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVA 127 (283)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 3444556789999999999999997633321 12223344444444444455555566666666655432 2234556
Q ss_pred ecchhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 189 KTNTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 189 KtnlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
.+...+|.+++..|+|++....+++..+.|
T Consensus 128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 128 KQLNNLALLCQNQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 677889999999999999998888877664
No 39
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=90.98 E-value=0.79 Score=34.49 Aligned_cols=106 Identities=8% Similarity=0.006 Sum_probs=68.3
Q ss_pred cceeeEeeccchHHHHHHHHHHHhhhhhccCcc--ccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeec
Q psy3486 113 NTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRN--YSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKT 190 (222)
Q Consensus 113 q~ik~~idqg~y~~~l~~y~~LLtyiksaVtrN--ysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKt 190 (222)
..-.....+|+|++|+++|++.+...+ ....+ ..-.+.+++-.......+.+--.+.|+..++..+..++......+
T Consensus 71 ~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 149 (203)
T 3gw4_A 71 QVGMVERMAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 334445678999999999999999764 22211 111122222222222235555566677777766666655555556
Q ss_pred chhhhhhhhchhhHhHHHHHHHHHHHhhh
Q psy3486 191 NTKLGKLYFDREDFNKLSRILKQLHQSCQ 219 (222)
Q Consensus 191 nlKlakL~ld~~ey~~l~~~l~~L~~~c~ 219 (222)
...+|.+++..|+|++....+++..+.++
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 67899999999999999988887766554
No 40
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=89.76 E-value=1.1 Score=41.94 Aligned_cols=98 Identities=8% Similarity=0.077 Sum_probs=70.4
Q ss_pred eeccchHHHHHHHHHHHhhhhhccCcc--ccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhc--CCCCceeeecchhh
Q psy3486 119 IDQSNYKEMMSRYKQLLLYIKSAVTRN--YSEKSINSILDYISTSKNMELLQDFYETTLEALKD--AKNDRLWFKTNTKL 194 (222)
Q Consensus 119 idqg~y~~~l~~y~~LLtyiksaVtrN--ysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~--~~NeRLWfKtnlKl 194 (222)
-.||+|++|+..|++.|.--......+ +.-.+.|++-..+..-.+.+=-..+|+.+|+..+. ..+..--..+-.+|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 378999999999999999554444444 45677888877666555555566677777665542 23344455667789
Q ss_pred hhhhhchhhHhHHHHHHHHHHH
Q psy3486 195 GKLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 195 akL~ld~~ey~~l~~~l~~L~~ 216 (222)
|.+|..+|+|+++...+++..+
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988776543
No 41
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=89.66 E-value=0.78 Score=35.79 Aligned_cols=102 Identities=12% Similarity=0.061 Sum_probs=67.8
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccCcc--ccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcC--CCCceeeecch
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVTRN--YSEKSINSILDYISTSKNMELLQDFYETTLEALKDA--KNDRLWFKTNT 192 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVtrN--ysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~--~NeRLWfKtnl 192 (222)
.....|++++|+++|++-+.........+ ..-.+.+.+-..+....+.+--.++|+..++..+.. .+......+..
T Consensus 10 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 10 HSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp ---CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 34567999999999999999875443322 222333443333333445555666677666665443 44555667788
Q ss_pred hhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 193 KLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 193 KlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
.+|.++...|+|++....+++..+.+
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~ 115 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIR 115 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 89999999999999998888776654
No 42
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=89.37 E-value=1.2 Score=40.89 Aligned_cols=97 Identities=12% Similarity=0.070 Sum_probs=69.2
Q ss_pred eccchHHHHHHHHHHHhhhhhccCcc--ccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhc--CCCCceeeecchhhh
Q psy3486 120 DQSNYKEMMSRYKQLLLYIKSAVTRN--YSEKSINSILDYISTSKNMELLQDFYETTLEALKD--AKNDRLWFKTNTKLG 195 (222)
Q Consensus 120 dqg~y~~~l~~y~~LLtyiksaVtrN--ysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~--~~NeRLWfKtnlKla 195 (222)
.+|+|++|++.|++.|.--......+ +.-.+.|++-.-+..-.+.+--..+|+..|+..+. ..+..---.+-.+||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46899999999999999544444544 45577888877666555666666677777766552 223344455666899
Q ss_pred hhhhchhhHhHHHHHHHHHHH
Q psy3486 196 KLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 196 kL~ld~~ey~~l~~~l~~L~~ 216 (222)
.+|..+|+|+++...+++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999988776543
No 43
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=87.38 E-value=2.5 Score=30.90 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=55.3
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhh
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGK 196 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlak 196 (222)
..+.+|+|++|+++|++.+..- |. ...+..++=..+....+.+--.+.|+..++. +.++ .+.-..+|.
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~-p~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~----~~a~~~lg~ 89 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRD-PE-----NAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKF----IKGYIRKAA 89 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC----HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CC-----CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhh----hHHHHHHHH
Confidence 3567899999999999999843 32 1223333322222233443344455555542 2333 445567999
Q ss_pred hhhchhhHhHHHHHHHHHHH
Q psy3486 197 LYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 197 L~ld~~ey~~l~~~l~~L~~ 216 (222)
++...|+|++..+..+...+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999887776654
No 44
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=87.30 E-value=1.5 Score=32.67 Aligned_cols=101 Identities=13% Similarity=0.110 Sum_probs=57.9
Q ss_pred hccceeeEeeccchHHHHHHHHHHHhhhhhccC--cc----------ccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q psy3486 111 LDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVT--RN----------YSEKSINSILDYISTSKNMELLQDFYETTLEAL 178 (222)
Q Consensus 111 Ldq~ik~~idqg~y~~~l~~y~~LLtyiksaVt--rN----------ysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l 178 (222)
+...=...+.+|+|++|+++|++.+.++..... .. ......+++-..+....+.+--...|+..++.
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~- 92 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR- 92 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-
Confidence 444445567889999999999999997532110 00 00111222211111122333333344444442
Q ss_pred hcCCCCceeeecchhhhhhhhchhhHhHHHHHHHHHHHh
Q psy3486 179 KDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 179 ~~~~NeRLWfKtnlKlakL~ld~~ey~~l~~~l~~L~~~ 217 (222)
+. -+.+....+|..++..|+|+.....++...+.
T Consensus 93 -~p----~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 -EE----TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp -ST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CC----cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 22 24667788999999999999988777665543
No 45
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=87.04 E-value=3.3 Score=28.73 Aligned_cols=93 Identities=11% Similarity=0.158 Sum_probs=58.1
Q ss_pred eeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhhh
Q psy3486 119 IDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLY 198 (222)
Q Consensus 119 idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL~ 198 (222)
+.+|+|++|++.|++.+..- |. -.+...+...+-..+....+.+--.+.|+..++. ..+....-.+...+|.++
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~-p~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 13 LKNGKYDDASQLFLSFLELY-PN--GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-SS--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHC-CC--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHH
Confidence 46799999999999998843 32 1222344444433333334544445555555543 222222234456789999
Q ss_pred hchhhHhHHHHHHHHHHHh
Q psy3486 199 FDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 199 ld~~ey~~l~~~l~~L~~~ 217 (222)
...|+|++....++++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999888877654
No 46
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=86.39 E-value=0.28 Score=46.08 Aligned_cols=66 Identities=12% Similarity=0.118 Sum_probs=53.5
Q ss_pred chHHHHHH-HHHHHHHHH--------HHHHHhhccc--ccccHhHHHHHhcc---------------------chhHHHH
Q psy3486 3 DPFIREHI-EDLLRNIRT--------QVLIKLIKPY--TRIHIPFISRQLNI---------------------ETSDVLI 50 (222)
Q Consensus 3 D~~I~~hi-~~L~~~lr~--------q~Ll~li~PY--sri~i~~ia~~l~l---------------------~~~~ve~ 50 (222)
+.|++.++ -.+...+|. +++.....|| +||.++.++.++++ +.++||-
T Consensus 323 ~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEc 402 (455)
T 3t5v_B 323 RHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVEN 402 (455)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHHH
Confidence 56777777 666555554 4555567899 89999999999984 7889999
Q ss_pred hhhhhhHhhhhhhhhhhh
Q psy3486 51 KLIKPYTRIHIPFISRQL 68 (222)
Q Consensus 51 klsd~il~~hl~~l~d~~ 68 (222)
-+..+|-+.++.|.++.-
T Consensus 403 IlA~LI~~G~IkGyIsh~ 420 (455)
T 3t5v_B 403 VLVTLINLGLLRANCFPQ 420 (455)
T ss_dssp HHHHHHHHTSCCEEEETT
T ss_pred HHHHHHHcCCeEEEEecC
Confidence 999999999999999753
No 47
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=86.38 E-value=1.5 Score=39.97 Aligned_cols=101 Identities=12% Similarity=0.111 Sum_probs=69.9
Q ss_pred eeEeeccchHHHHHHHHHHHhhhhhccCcc--ccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhc--CCCCceeeecc
Q psy3486 116 RGRIDQSNYKEMMSRYKQLLLYIKSAVTRN--YSEKSINSILDYISTSKNMELLQDFYETTLEALKD--AKNDRLWFKTN 191 (222)
Q Consensus 116 k~~idqg~y~~~l~~y~~LLtyiksaVtrN--ysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~--~~NeRLWfKtn 191 (222)
....++|.|++|++.|++.|.--.+....+ +.-.+.|++-.-+..-.+.+--..+|+.+|+..+. ..+...--.+-
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 334468999999999999998333333322 44567777776555445566666777777766552 23445556677
Q ss_pred hhhhhhhhchhhHhHHHHHHHHHHH
Q psy3486 192 TKLGKLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 192 lKlakL~ld~~ey~~l~~~l~~L~~ 216 (222)
.+||.+|...|+|+++...+++..+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7899999999999999887776543
No 48
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=85.97 E-value=3.1 Score=28.26 Aligned_cols=94 Identities=11% Similarity=0.210 Sum_probs=59.3
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcC-CCCceeeecchhhhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA-KNDRLWFKTNTKLGK 196 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~-~NeRLWfKtnlKlak 196 (222)
.+..|+|++|+++|++.+..- |. .......+-..+....+.+--...|+..++..... .+......+...+|.
T Consensus 14 ~~~~~~~~~A~~~~~~a~~~~-~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 14 AYKKKDFDTALKHYDKAKELD-PT-----NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-Cc-----cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 456799999999999999854 22 12333444333333344444455566655544332 222222556678999
Q ss_pred hhhchhhHhHHHHHHHHHHHh
Q psy3486 197 LYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 197 L~ld~~ey~~l~~~l~~L~~~ 217 (222)
++...|+|+.....++...+.
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh
Confidence 999999999998888776654
No 49
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=83.75 E-value=3 Score=34.81 Aligned_cols=100 Identities=11% Similarity=0.002 Sum_probs=62.8
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccC-ccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhh
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVT-RNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLG 195 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVt-rNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKla 195 (222)
....+|+|++|+++|.+.+..- +... ....-.+.+++-..+....+.+---..|+..++.....++.+-...+..++|
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAH-ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3446799999999999998854 3221 1122334444444443333444445566666666665555554556777899
Q ss_pred hhhhchhhHhHHHHHHHHHHHhh
Q psy3486 196 KLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 196 kL~ld~~ey~~l~~~l~~L~~~c 218 (222)
.+|.. |+|++.....++..+.+
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~ 145 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVF 145 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHH
Confidence 99998 99999887776655443
No 50
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=83.28 E-value=5.5 Score=27.85 Aligned_cols=90 Identities=6% Similarity=0.081 Sum_probs=56.9
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhh
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGK 196 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlak 196 (222)
..+.+|+|++|++.|++.+..- |. . .....++-..+....+.+--.+.|+..++. ...+ ......+|.
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~-p~----~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~----~~~~~~lg~ 80 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRA-PE----D-ARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNF----VRAYIRKAT 80 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TT----C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC----HHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CC----C-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCc----HHHHHHHHH
Confidence 3467899999999999999843 32 1 233333333222334444444555555543 2233 455667999
Q ss_pred hhhchhhHhHHHHHHHHHHHhh
Q psy3486 197 LYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 197 L~ld~~ey~~l~~~l~~L~~~c 218 (222)
++...|+|+.....+++..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 9999999999988887766543
No 51
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=82.67 E-value=4.2 Score=26.81 Aligned_cols=92 Identities=9% Similarity=-0.038 Sum_probs=56.8
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKL 197 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL 197 (222)
.+.+|+|++|+++|++.+..- +. ...+..++-..+....+.+--.+.|+..++. ... .........+|.+
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~-~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~--~~~~~~~~~l~~~ 85 (112)
T 2kck_A 16 QYDAGNYTESIDLFEKAIQLD-PE-----ESKYWLMKGKALYNLERYEEAVDCYNYVINV--IED--EYNKDVWAAKADA 85 (112)
T ss_dssp HHSSCCHHHHHHHHHHHHHHC-CC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCC--TTCHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhC-cC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--Ccc--cchHHHHHHHHHH
Confidence 346799999999999999843 32 1233333333332333444444455554442 122 1112345679999
Q ss_pred hhch-hhHhHHHHHHHHHHHhhh
Q psy3486 198 YFDR-EDFNKLSRILKQLHQSCQ 219 (222)
Q Consensus 198 ~ld~-~ey~~l~~~l~~L~~~c~ 219 (222)
+... |+|++..+.++.+.+.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999888876553
No 52
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=82.11 E-value=7 Score=31.16 Aligned_cols=93 Identities=13% Similarity=0.086 Sum_probs=51.0
Q ss_pred eeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCC---ceeeecchhhh
Q psy3486 119 IDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKND---RLWFKTNTKLG 195 (222)
Q Consensus 119 idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~Ne---RLWfKtnlKla 195 (222)
..+|++++|+++|++.+..- |. ...+.+.+-.......+.+--.+.|+..++......+. .-|..+...+|
T Consensus 170 ~~~~~~~~A~~~~~~al~~~-~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIA-PE-----DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhC-CC-----ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 34555666666666555532 11 12333333333333344444555666666554432221 34455666788
Q ss_pred hhhhchhhHhHHHHHHHHHHHh
Q psy3486 196 KLYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 196 kL~ld~~ey~~l~~~l~~L~~~ 217 (222)
.++...|+|++....+++..+.
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhh
Confidence 8888888888888777766543
No 53
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=82.05 E-value=1.4 Score=36.10 Aligned_cols=41 Identities=20% Similarity=0.407 Sum_probs=36.1
Q ss_pred cccccHhHHHHHhCCC-hHHHHHHHH-HHhhccceeeEeeccc
Q psy3486 83 YTRIHIPFISRQLNIE-TSDVESLLV-SLILDNTVRGRIDQSN 123 (222)
Q Consensus 83 ys~v~i~~ia~~l~l~-~~~VE~~L~-~~iLdq~ik~~idqg~ 123 (222)
-..+..+.|++.++++ +++||..+. ..+-.+.|+|++||.+
T Consensus 107 ~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~ 149 (169)
T 3chm_A 107 NKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLK 149 (169)
T ss_dssp CSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTT
T ss_pred CCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcC
Confidence 4566778899999999 999999888 8888999999999965
No 54
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.89 E-value=4.5 Score=33.43 Aligned_cols=99 Identities=9% Similarity=0.021 Sum_probs=62.0
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccC-ccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVT-RNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGK 196 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVt-rNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlak 196 (222)
...+|+|++|+++|++.+..- +... ......+.+++-..+....+.+---..|+..++.....++..--..+..++|.
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQ-KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 446799999999999999854 3322 11123444454444433345444556677777665554443333445668999
Q ss_pred hhhch-hhHhHHHHHHHHHHHh
Q psy3486 197 LYFDR-EDFNKLSRILKQLHQS 217 (222)
Q Consensus 197 L~ld~-~ey~~l~~~l~~L~~~ 217 (222)
+|... |+|++.....++..+.
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~ 147 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEW 147 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHH
Confidence 99996 9999887776655443
No 55
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=81.84 E-value=6.4 Score=30.08 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=59.1
Q ss_pred hccceeeEeeccchHHHHHHHHHHHhhhhhccCcccc----------HHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhc
Q psy3486 111 LDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYS----------EKSINSILDYISTSKNMELLQDFYETTLEALKD 180 (222)
Q Consensus 111 Ldq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNys----------EksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~ 180 (222)
+...-...+.+|+|++|++.|++.+............ .....++-..+....+.+--.+.|+..++. .
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~ 118 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--D 118 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--C
Confidence 3334445678899999999999999865221110000 122222222222233444444455555543 2
Q ss_pred CCCCceeeecchhhhhhhhchhhHhHHHHHHHHHHHh
Q psy3486 181 AKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 181 ~~NeRLWfKtnlKlakL~ld~~ey~~l~~~l~~L~~~ 217 (222)
..+ .+....+|.+++..|+|++....+++..+.
T Consensus 119 p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 119 KNN----VKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 223 345677999999999999998887776543
No 56
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=81.60 E-value=9.3 Score=25.39 Aligned_cols=88 Identities=16% Similarity=0.297 Sum_probs=56.4
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKL 197 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL 197 (222)
....|++++|++.|++.+..- + ....+.+.+-..+....+.+--..+|+..++. ...+... ...+|.+
T Consensus 19 ~~~~~~~~~A~~~~~~~~~~~-~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~----~~~la~~ 86 (125)
T 1na0_A 19 YYKQGDYDEAIEYYQKALELD-P-----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEA----WYNLGNA 86 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH----HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-c-----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHH----HHHHHHH
Confidence 445799999999999998843 2 12334444444443444544445555555543 2223333 3578999
Q ss_pred hhchhhHhHHHHHHHHHHHh
Q psy3486 198 YFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 198 ~ld~~ey~~l~~~l~~L~~~ 217 (222)
+...++|++....+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999998888776553
No 57
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=81.06 E-value=7.8 Score=27.05 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=57.8
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhh
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGK 196 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlak 196 (222)
..+.+|+|++|+++|++.+..- |. ......++-..+....+.+--...|+..++. ...+ ......+|.
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~-~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~----~~~~~~l~~ 85 (137)
T 3q49_B 18 RLFVGRKYPEAAACYGRAITRN-PL-----VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQS----VKAHFFLGQ 85 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC----HHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHhhC-cC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--Cchh----HHHHHHHHH
Confidence 3457899999999999999854 32 1233333333333334444444555555543 2222 345567999
Q ss_pred hhhchhhHhHHHHHHHHHHHhh
Q psy3486 197 LYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 197 L~ld~~ey~~l~~~l~~L~~~c 218 (222)
++...|+|+.....++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 9999999999988888776654
No 58
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=81.01 E-value=8.6 Score=32.08 Aligned_cols=102 Identities=10% Similarity=0.045 Sum_probs=64.4
Q ss_pred eeEeeccchHHHHHHHHHHHhhhhhccCc--cccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchh
Q psy3486 116 RGRIDQSNYKEMMSRYKQLLLYIKSAVTR--NYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTK 193 (222)
Q Consensus 116 k~~idqg~y~~~l~~y~~LLtyiksaVtr--NysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlK 193 (222)
.....+|+|++|.++|++.+......-.. .....+.+++-..+....+.+--...|+..++.....++.. ...+...
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 179 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAM 179 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHH
Confidence 34567899999999999999965321111 01112222222222233455666677777777655444333 4456678
Q ss_pred hhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 194 LGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 194 lakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
+|.++...|++++....+++..+..
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999998888766543
No 59
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=80.72 E-value=5.5 Score=28.86 Aligned_cols=91 Identities=12% Similarity=0.207 Sum_probs=54.1
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCC-CCceeeecchhhh
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAK-NDRLWFKTNTKLG 195 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~-NeRLWfKtnlKla 195 (222)
..+++|+|++|+++|++-+.. .|. . ..+.+++=.-+....+.+---+.|+..++.-.+.. .-...-++...+|
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~-~p~----~-~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIEL-DPS----N-ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTT----C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCC----C-HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 346789999999999999984 343 1 22334433323233344444445555555322221 1122235677889
Q ss_pred hhhhchhhHhHHHHHHHH
Q psy3486 196 KLYFDREDFNKLSRILKQ 213 (222)
Q Consensus 196 kL~ld~~ey~~l~~~l~~ 213 (222)
..+...++|...-+..++
T Consensus 91 ~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 999999999988765544
No 60
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=80.52 E-value=2.3 Score=35.87 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhccc-hhHHHHhhh
Q psy3486 7 REHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIE-TSDVLIKLI 53 (222)
Q Consensus 7 ~~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~-~~~ve~kls 53 (222)
.-.++-+.+++|..++--+.+.|.+|.++.+++.||++ .++++..+.
T Consensus 166 ~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~ 213 (229)
T 4b0z_A 166 SYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAE 213 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHH
Confidence 44567788999999999999999999999999999995 556654443
No 61
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.33 E-value=6.6 Score=27.47 Aligned_cols=93 Identities=8% Similarity=-0.010 Sum_probs=56.7
Q ss_pred eeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhh
Q psy3486 116 RGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLG 195 (222)
Q Consensus 116 k~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKla 195 (222)
...+.+|+|++|++.|++.+..- +. .........++-..+....+.+--.+.|+..++. ...+-. ....+|
T Consensus 36 ~~~~~~~~~~~A~~~~~~a~~~~-~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~----~~~~~a 106 (148)
T 2dba_A 36 NELFKCGDYGGALAAYTQALGLD-AT--PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVK----ALYRRS 106 (148)
T ss_dssp HHHHTTTCHHHHHHHHHHHHTSC-CC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHH----HHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHc-cc--chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHH----HHHHHH
Confidence 34567899999999999998843 21 0011233333333333334444444555555443 223333 345789
Q ss_pred hhhhchhhHhHHHHHHHHHHHh
Q psy3486 196 KLYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 196 kL~ld~~ey~~l~~~l~~L~~~ 217 (222)
.++...++|++....+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999888877654
No 62
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=80.14 E-value=7.4 Score=28.71 Aligned_cols=90 Identities=19% Similarity=0.178 Sum_probs=57.3
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhh
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGK 196 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlak 196 (222)
..+.+|+|++|+++|++.+..- +. ......++-..+....+.+--.+.|+..++. ...+ ......+|.
T Consensus 20 ~~~~~g~~~~A~~~~~~al~~~-p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~----~~~~~~lg~ 87 (164)
T 3sz7_A 20 AAMARKEYSKAIDLYTQALSIA-PA-----NPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKY----SKAWSRLGL 87 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC----HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-Cc-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCC----HHHHHHHHH
Confidence 4457899999999999999854 32 1233333333332334444445555555543 2233 345567999
Q ss_pred hhhchhhHhHHHHHHHHHHHhh
Q psy3486 197 LYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 197 L~ld~~ey~~l~~~l~~L~~~c 218 (222)
++...|+|++....+++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999988887766543
No 63
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=79.68 E-value=5 Score=31.42 Aligned_cols=88 Identities=13% Similarity=0.049 Sum_probs=38.6
Q ss_pred eeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhhh
Q psy3486 119 IDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLY 198 (222)
Q Consensus 119 idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL~ 198 (222)
+..|+|++|++.|++.+..- |.-. .+...+-..+....+.+--.+.|+..++ ...+......+...+|.++
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~-p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKK-YNSP-----YIYNRRAVCYYELAKYDLAQKDIETYFS---KVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTT-CCCS-----TTHHHHHHHHHHTTCHHHHHHHHHHHHT---TSCTTTCCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHh---ccCchhHHHHHHHHHHHHH
Confidence 34566666666666666522 2111 1222222222222222222233333322 2233344344445566666
Q ss_pred hchhhHhHHHHHHHHHH
Q psy3486 199 FDREDFNKLSRILKQLH 215 (222)
Q Consensus 199 ld~~ey~~l~~~l~~L~ 215 (222)
...|+|++..+.++...
T Consensus 85 ~~~~~~~~A~~~~~~a~ 101 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAV 101 (272)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHH
Confidence 66666666555554443
No 64
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=79.34 E-value=6 Score=27.03 Aligned_cols=91 Identities=10% Similarity=0.098 Sum_probs=59.1
Q ss_pred eeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhh
Q psy3486 116 RGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLG 195 (222)
Q Consensus 116 k~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKla 195 (222)
...+.+|+|++|++.|++.+..- +. .......+-..+....+.+--.+.|+..++. ...+.. +...+|
T Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~-~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~----~~~~la 91 (133)
T 2lni_A 24 NECFQKGDYPQAMKHYTEAIKRN-PK-----DAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIK----GYTRKA 91 (133)
T ss_dssp HHHHHTTCSHHHHHHHHHHHTTC-TT-----CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHH----HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CC-----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchH----HHHHHH
Confidence 34567899999999999998843 21 2344444444343444555455566655553 222323 446789
Q ss_pred hhhhchhhHhHHHHHHHHHHHhh
Q psy3486 196 KLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 196 kL~ld~~ey~~l~~~l~~L~~~c 218 (222)
.+++..|+|++..+.+++..+..
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999999999998888776543
No 65
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=78.51 E-value=11 Score=25.08 Aligned_cols=88 Identities=16% Similarity=0.308 Sum_probs=44.6
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKL 197 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL 197 (222)
....|++++|++.|++.+..- +. .......+-.......+.+--.++|+..++. ...+.. +...+|.+
T Consensus 45 ~~~~~~~~~A~~~~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~----~~~~la~~ 112 (136)
T 2fo7_A 45 YYKQGDYDEAIEYYQKALELD-PR-----SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAE----AWYNLGNA 112 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHH----HHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHC-CC-----chHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChH----HHHHHHHH
Confidence 345566777777777766532 11 1223333333333333433333444444332 112222 33457778
Q ss_pred hhchhhHhHHHHHHHHHHHh
Q psy3486 198 YFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 198 ~ld~~ey~~l~~~l~~L~~~ 217 (222)
+...|++++....+++..+.
T Consensus 113 ~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 113 YYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHcc
Confidence 88888888777777665543
No 66
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=78.11 E-value=8.6 Score=29.43 Aligned_cols=111 Identities=11% Similarity=0.107 Sum_probs=70.1
Q ss_pred HHHHhCCChHHHHHHHHHHhhccceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHH
Q psy3486 91 ISRQLNIETSDVESLLVSLILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDF 170 (222)
Q Consensus 91 ia~~l~l~~~~VE~~L~~~iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~f 170 (222)
+.+.++++++..+. +..++ ...+.+|+|++|++.|++.+..- |. ......++=.-+....+.+---+.
T Consensus 25 l~~al~l~p~~~~~-~~~lg-----~~~~~~g~~~eA~~~~~~al~~~-P~-----~~~~~~~lg~~~~~~g~~~~Ai~~ 92 (151)
T 3gyz_A 25 LKDINAIPDDMMDD-IYSYA-----YDFYNKGRIEEAEVFFRFLCIYD-FY-----NVDYIMGLAAIYQIKEQFQQAADL 92 (151)
T ss_dssp TGGGCCSCHHHHHH-HHHHH-----HHHHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHH-HHHHH-----HHHHHcCCHHHHHHHHHHHHHhC-CC-----CHHHHHHHHHHHHHHccHHHHHHH
Confidence 45668888888874 22222 23467899999999999999843 42 222333332222223344444455
Q ss_pred HHHHHHHHhcCCCCceeeecchhhhhhhhchhhHhHHHHHHHHHHHhhh
Q psy3486 171 YETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQ 219 (222)
Q Consensus 171 Ye~TL~~l~~~~NeRLWfKtnlKlakL~ld~~ey~~l~~~l~~L~~~c~ 219 (222)
|+..+.. ...+-..|+ .+|..|+..|+|+......+...+.+.
T Consensus 93 ~~~al~l--~P~~~~~~~----~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 93 YAVAFAL--GKNDYTPVF----HTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHH--SSSCCHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHhh--CCCCcHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5555542 344555554 689999999999999988887776553
No 67
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=76.69 E-value=2.5 Score=35.05 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=49.9
Q ss_pred cccccccHhHHHHHhccc----hhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhc---cccccccHhHHHHHhCCC
Q psy3486 27 KPYTRIHIPFISRQLNIE----TSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLI---KPYTRIHIPFISRQLNIE 98 (222)
Q Consensus 27 ~PYsri~i~~ia~~l~l~----~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~ii---epys~v~i~~ia~~l~l~ 98 (222)
+||.......++++++.. -+++-.+-.+.|++.++.-++..+....-.|++|-| -|||+|.++.|+..++++
T Consensus 76 ~~~~~~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~ 154 (203)
T 3t5x_A 76 KKYHLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFM 154 (203)
T ss_dssp HHTTCGGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHT
T ss_pred hhCchhHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhc
Confidence 455544455555555443 234445667899999999888766555556666643 399999999999999875
No 68
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=76.59 E-value=8.9 Score=29.30 Aligned_cols=93 Identities=12% Similarity=0.138 Sum_probs=57.7
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCC-ceeeecchhhh
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKND-RLWFKTNTKLG 195 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~Ne-RLWfKtnlKla 195 (222)
..+.+|+|++|+++|++.+..- ....+...+-..+....+.+--.+.|+..++......++ .....+...+|
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELH-------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 4456799999999999998843 112344444443333445444555555555543332212 11145667789
Q ss_pred hhhhchhhHhHHHHHHHHHHH
Q psy3486 196 KLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 196 kL~ld~~ey~~l~~~l~~L~~ 216 (222)
.++...|+|++....+++..+
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHh
Confidence 999999999988877776655
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=76.56 E-value=14 Score=26.34 Aligned_cols=25 Identities=8% Similarity=0.046 Sum_probs=14.2
Q ss_pred hhhhhhhhchhhHhHHHHHHHHHHH
Q psy3486 192 TKLGKLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 192 lKlakL~ld~~ey~~l~~~l~~L~~ 216 (222)
..+|.++...|++++....+++..+
T Consensus 148 ~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 148 RAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456666666666666555555443
No 70
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=76.44 E-value=14 Score=24.63 Aligned_cols=90 Identities=11% Similarity=0.038 Sum_probs=56.0
Q ss_pred eeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhh
Q psy3486 116 RGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLG 195 (222)
Q Consensus 116 k~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKla 195 (222)
...+..|+|++|++.|++.+..- +. ...+...+-.......+.+--.+.|+..++. ...+. .....+|
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~-~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~----~~~~~~~ 87 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELN-PA-----NAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYS----KAYGRMG 87 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH----HHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHcC-CC-----CHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCH----HHHHHHH
Confidence 34456799999999999998843 21 1223333333333334444444555555543 22222 3446789
Q ss_pred hhhhchhhHhHHHHHHHHHHHh
Q psy3486 196 KLYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 196 kL~ld~~ey~~l~~~l~~L~~~ 217 (222)
.++...|+|+.....+++..+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999998888776654
No 71
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=75.58 E-value=11 Score=24.88 Aligned_cols=88 Identities=7% Similarity=-0.000 Sum_probs=54.3
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKL 197 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL 197 (222)
.+..|+|++|++.|++.+..- |. .......+-.......+.+--.+.|+..++. ...+. .....+|.+
T Consensus 14 ~~~~~~~~~A~~~~~~~~~~~-~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~----~~~~~~a~~ 81 (118)
T 1elw_A 14 ALSVGNIDDALQCYSEAIKLD-PH-----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWG----KGYSRKAAA 81 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH----HHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CC-----cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccH----HHHHHHHHH
Confidence 346799999999999998843 32 1233333333222233444444445544443 22233 344678999
Q ss_pred hhchhhHhHHHHHHHHHHHh
Q psy3486 198 YFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 198 ~ld~~ey~~l~~~l~~L~~~ 217 (222)
+...|+|++....+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 99999999998888776554
No 72
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=74.84 E-value=13 Score=28.09 Aligned_cols=94 Identities=10% Similarity=0.008 Sum_probs=56.2
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCC----------CCcee
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAK----------NDRLW 187 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~----------NeRLW 187 (222)
...+|+|++|+++|++.+..- |. ...+.+++-..+....+.+--.+.|+..++...... ...-.
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~-~~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 120 (213)
T 1hh8_A 47 YTILKNMTEAEKAFTRSINRD-KH-----LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA 120 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cc-----chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccc
Confidence 456899999999999999843 32 223444443333333444444455555554322111 00111
Q ss_pred eecchhhhhhhhchhhHhHHHHHHHHHHHh
Q psy3486 188 FKTNTKLGKLYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 188 fKtnlKlakL~ld~~ey~~l~~~l~~L~~~ 217 (222)
..+...+|.+++..|+|++....++...+.
T Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 121 CEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 245578999999999999998887766543
No 73
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=74.40 E-value=6.1 Score=34.72 Aligned_cols=101 Identities=14% Similarity=0.136 Sum_probs=58.9
Q ss_pred hccceeeEeeccchHHHHHHHHHHHhhhhhcc----------CccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhc
Q psy3486 111 LDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAV----------TRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKD 180 (222)
Q Consensus 111 Ldq~ik~~idqg~y~~~l~~y~~LLtyiksaV----------trNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~ 180 (222)
+...-...+.+|+|++|+++|++.+.+..... .........+++-..+....+.+--.+.|+..++. .
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--D 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--C
Confidence 44455567788999999999999999763210 00111122222222222223333333344433331 1
Q ss_pred CCCCceeeecchhhhhhhhchhhHhHHHHHHHHHHHh
Q psy3486 181 AKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 181 ~~NeRLWfKtnlKlakL~ld~~ey~~l~~~l~~L~~~ 217 (222)
.. +.+....+|.+|...++|+++...+++..+.
T Consensus 304 p~----~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 PS----NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ch----hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 22 3566678999999999999998877766543
No 74
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=73.50 E-value=20 Score=25.77 Aligned_cols=109 Identities=8% Similarity=0.029 Sum_probs=64.9
Q ss_pred HHHhCCChHHHHHHHHHHhhccceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHH
Q psy3486 92 SRQLNIETSDVESLLVSLILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFY 171 (222)
Q Consensus 92 a~~l~l~~~~VE~~L~~~iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fY 171 (222)
.+.+.++++..+... .. -...+.+|+|++|++.|++.+..- |. .......+=..+....+.+--.+.|
T Consensus 8 ~~al~~~p~~~~~~~-~~-----a~~~~~~g~~~~A~~~~~~al~~~-p~-----~~~~~~~lg~~~~~~g~~~~A~~~~ 75 (142)
T 2xcb_A 8 AMLRGLSEDTLEQLY-AL-----GFNQYQAGKWDDAQKIFQALCMLD-HY-----DARYFLGLGACRQSLGLYEQALQSY 75 (142)
T ss_dssp -CCTTCCHHHHHHHH-HH-----HHHHHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH-HH-----HHHHHHHccHHHHHHHHHHHHHhC-Cc-----cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344566666666322 21 223457899999999999999833 42 1222222222222233444455556
Q ss_pred HHHHHHHhcCCCCceeeecchhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 172 ETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 172 e~TL~~l~~~~NeRLWfKtnlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
+..+.. ...+-..| ..+|.++...|+|+...+.++...+.+
T Consensus 76 ~~al~~--~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 76 SYGALM--DINEPRFP----FHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHH--CTTCTHHH----HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCcHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 655553 34455555 568999999999999888887765543
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=73.19 E-value=14 Score=30.68 Aligned_cols=102 Identities=4% Similarity=-0.087 Sum_probs=63.3
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccCccccH-HHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCC--ceeeecchh
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSE-KSINSILDYISTSKNMELLQDFYETTLEALKDAKND--RLWFKTNTK 193 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVtrNysE-ksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~Ne--RLWfKtnlK 193 (222)
....+|+|++|.+.+++.+... +.....+.. .+.+.+-.......+.+--.+.|+..++.....+.. .....+...
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 140 (373)
T 1hz4_A 62 VLHCKGELTRSLALMQQTEQMA-RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH
Confidence 4456799999999999999865 332211111 111222222222335555566777777766544332 222344566
Q ss_pred hhhhhhchhhHhHHHHHHHHHHHhhh
Q psy3486 194 LGKLYFDREDFNKLSRILKQLHQSCQ 219 (222)
Q Consensus 194 lakL~ld~~ey~~l~~~l~~L~~~c~ 219 (222)
+|.++...|+|++....+++..+.|.
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 89999999999999998888776654
No 76
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=72.69 E-value=19 Score=25.50 Aligned_cols=26 Identities=4% Similarity=-0.046 Sum_probs=13.9
Q ss_pred chhhhhhhhchhhHhHHHHHHHHHHH
Q psy3486 191 NTKLGKLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 191 nlKlakL~ld~~ey~~l~~~l~~L~~ 216 (222)
++.++..++..|+|.+..........
T Consensus 120 ~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 120 KYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccchHH
Confidence 34455555666666665555544433
No 77
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=72.34 E-value=4.8 Score=27.85 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=30.1
Q ss_pred ccccHhHHHHHhCCChHHHHHHHHHHhhccceee
Q psy3486 84 TRIHIPFISRQLNIETSDVESLLVSLILDNTVRG 117 (222)
Q Consensus 84 s~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~ 117 (222)
-.+.|+++|+.+|++.++|-..|..+.-|+.|+.
T Consensus 24 GildI~~~a~kygV~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 24 GFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp SEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCeec
Confidence 3467999999999999999999999998888875
No 78
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=71.69 E-value=4.2 Score=29.20 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=36.6
Q ss_pred hhhhhhhccccc---cccHhHHHHHhCCChHHHHHHHHHHhhccceee
Q psy3486 73 SDVLIKLIKPYT---RIHIPFISRQLNIETSDVESLLVSLILDNTVRG 117 (222)
Q Consensus 73 ~~~l~~iiepys---~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~ 117 (222)
++.|++++.--. ++....||+.+|++...|...|..+-=++.|.-
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~ 59 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQK 59 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 455666666556 999999999999999999998888777777753
No 79
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=71.27 E-value=24 Score=24.92 Aligned_cols=89 Identities=10% Similarity=0.008 Sum_probs=45.9
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhh
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGK 196 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlak 196 (222)
..+.+|+|++|++.|++.+..- +. ...+..++-..+....+.+--.+.|+..++. ...+- .+...+|.
T Consensus 22 ~~~~~~~~~~A~~~~~~al~~~-~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~----~~~~~~a~ 89 (166)
T 1a17_A 22 DYFKAKDYENAIKFYSQAIELN-PS-----NAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYI----KGYYRRAA 89 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH----HHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccH----HHHHHHHH
Confidence 3455677777777777777632 21 1223333333222333443334444444442 12222 23445777
Q ss_pred hhhchhhHhHHHHHHHHHHHh
Q psy3486 197 LYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 197 L~ld~~ey~~l~~~l~~L~~~ 217 (222)
++...|+|++....+++..+.
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh
Confidence 777777777777666665544
No 80
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=70.86 E-value=23 Score=26.20 Aligned_cols=110 Identities=11% Similarity=0.080 Sum_probs=66.1
Q ss_pred HHHHhCCChHHHHHHHHHHhhccceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHH
Q psy3486 91 ISRQLNIETSDVESLLVSLILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDF 170 (222)
Q Consensus 91 ia~~l~l~~~~VE~~L~~~iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~f 170 (222)
+.+.+.++++..+... . .-...+.+|+|++|++.|++.+..- |. ......++=..+....+.+--.+.
T Consensus 10 ~~~al~~~p~~~~~~~-~-----~g~~~~~~g~~~~A~~~~~~al~~~-p~-----~~~~~~~lg~~~~~~g~~~~A~~~ 77 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLY-S-----LAFNQYQSGXYEDAHXVFQALCVLD-HY-----DSRFFLGLGACRQAMGQYDLAIHS 77 (148)
T ss_dssp HHHHTTCCHHHHHHHH-H-----HHHHHHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcCCHhhHHHHH-H-----HHHHHHHcCChHHHHHHHHHHHHcC-cc-----cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4456677777666322 1 2223457899999999999998833 32 122223222222223344444455
Q ss_pred HHHHHHHHhcCCCCceeeecchhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 171 YETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 171 Ye~TL~~l~~~~NeRLWfKtnlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
|+..+.. ...+-..| ..+|.+|+..|+++.....++...+.+
T Consensus 78 ~~~al~l--~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 78 YSYGAVM--DIXEPRFP----FHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHH--STTCTHHH----HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCchHH----HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5555542 33444555 568999999999999988877766544
No 81
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=70.52 E-value=16 Score=30.19 Aligned_cols=89 Identities=12% Similarity=0.201 Sum_probs=57.0
Q ss_pred ccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHH--HhcCCCCceeeecchhhhhhh
Q psy3486 121 QSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEA--LKDAKNDRLWFKTNTKLGKLY 198 (222)
Q Consensus 121 qg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~--l~~~~NeRLWfKtnlKlakL~ 198 (222)
+|++++|.+.|++.+..- |. +.....+..++.....+.+-....|+..++. +...++..+|. .++.+.
T Consensus 182 ~~~~~~A~~~~~~al~~~-p~-----~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~----~~~~~~ 251 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKY-GD-----IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA----RFLAFE 251 (308)
T ss_dssp SCCHHHHHHHHHHHHHHH-TT-----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHH----HHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHH----HHHHHH
Confidence 477777777777777743 32 3455666666665555666667777777663 23234556663 356777
Q ss_pred hchhhHhHHHHHHHHHHHhhh
Q psy3486 199 FDREDFNKLSRILKQLHQSCQ 219 (222)
Q Consensus 199 ld~~ey~~l~~~l~~L~~~c~ 219 (222)
...|+++.+..+.+...+.+-
T Consensus 252 ~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 252 SNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHSCHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHHcc
Confidence 778888888877777666553
No 82
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=70.43 E-value=9.7 Score=35.42 Aligned_cols=112 Identities=7% Similarity=-0.053 Sum_probs=74.6
Q ss_pred HHHhhccceeeEeeccchHHHHHHHHHHHhhhhhccCccc--cHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcC--C
Q psy3486 107 VSLILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNY--SEKSINSILDYISTSKNMELLQDFYETTLEALKDA--K 182 (222)
Q Consensus 107 ~~~iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNy--sEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~--~ 182 (222)
+..++++......++|+|++|..+|++.|.-.......+. .-.+.|++=..+......+--..+|+-.++-++.+ .
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~ 429 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP 429 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 5556777777788999999999999999995544444443 33455665554444444444556666666555522 2
Q ss_pred CCceeeecchhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 183 NDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 183 NeRLWfKtnlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
+.-.--.+.-.|+..+.+.+.|.....+.+..++.-
T Consensus 430 ~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 430 SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455678888899999999998888776643
No 83
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=69.98 E-value=3.9 Score=29.39 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=27.7
Q ss_pred HHHHHHhhcccc---cccHhHHHHHhccchhHHHHhhhhh
Q psy3486 19 TQVLIKLIKPYT---RIHIPFISRQLNIETSDVLIKLIKP 55 (222)
Q Consensus 19 ~q~Ll~li~PYs---ri~i~~ia~~l~l~~~~ve~klsd~ 55 (222)
++.|+.++.--. ++....||+.||+|...|...|..+
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~L 51 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSL 51 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 444556666555 9999999999999998877554433
No 84
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=69.62 E-value=16 Score=26.88 Aligned_cols=89 Identities=10% Similarity=0.131 Sum_probs=54.8
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHH-hhcCCch--HHHHHHHHHHHHHHhcCCCCceeeecchhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDY-ISTSKNM--ELLQDFYETTLEALKDAKNDRLWFKTNTKL 194 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~-vs~s~~~--~~l~~fYe~TL~~l~~~~NeRLWfKtnlKl 194 (222)
.+..|+|++|+++|++.+..- |. .......+-.. +....+. +--.+.|+..++. ..++... ...+
T Consensus 54 ~~~~~~~~~A~~~~~~al~~~-p~-----~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~--~p~~~~~----~~~l 121 (177)
T 2e2e_A 54 YLWQNDYSNSLLAYRQALQLR-GE-----NAELYAALATVLYYQASQHMTAQTRAMIDKALAL--DSNEITA----LMLL 121 (177)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-CS-----CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH--CTTCHHH----HHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CC-----CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh--CCCcHHH----HHHH
Confidence 356799999999999999854 32 12233333322 2122232 4444555554442 2333333 4568
Q ss_pred hhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 195 GKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 195 akL~ld~~ey~~l~~~l~~L~~~c 218 (222)
|.+++..|+|++....+++..+..
T Consensus 122 a~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 122 ASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999999998888776543
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=68.41 E-value=20 Score=28.34 Aligned_cols=94 Identities=13% Similarity=0.166 Sum_probs=57.8
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKL 197 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL 197 (222)
.+++|+|++|++.|++++..- |. -.+...+...+-.-+....+.+--...|+..++. ..+..........+|..
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~-p~--~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~lg~~ 98 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYG-RT--HEWAADAQFYLARAYYQNKEYLLAASEYERFIQI---YQIDPRVPQAEYERAMC 98 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGC-SC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CC--CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH---CCCCchhHHHHHHHHHH
Confidence 356799999999999999833 32 1122444444433333334444444555555443 22222333455678888
Q ss_pred hhc--------hhhHhHHHHHHHHHHHh
Q psy3486 198 YFD--------REDFNKLSRILKQLHQS 217 (222)
Q Consensus 198 ~ld--------~~ey~~l~~~l~~L~~~ 217 (222)
++. .|+|++....++++.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 99 YYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHH
Confidence 888 99999999888877653
No 86
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=68.25 E-value=28 Score=25.76 Aligned_cols=28 Identities=7% Similarity=0.089 Sum_probs=18.8
Q ss_pred cchhhhhhhhchhhHhHHHHHHHHHHHh
Q psy3486 190 TNTKLGKLYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 190 tnlKlakL~ld~~ey~~l~~~l~~L~~~ 217 (222)
+...+|.+++..|+|+.....+++..+.
T Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 149 AFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445777777777777777777665554
No 87
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=68.14 E-value=9.9 Score=32.19 Aligned_cols=94 Identities=13% Similarity=0.189 Sum_probs=61.0
Q ss_pred eeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhh
Q psy3486 115 VRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKL 194 (222)
Q Consensus 115 ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKl 194 (222)
....+.+|++++|+++|++.+..- |. ...+.......+-+.+....+.+--.++|+..++. ...+.. +-..+
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~~-p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~----~~~~l 335 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKTE-PS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVN----ALKDR 335 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-CS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHH----HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-Cc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHH----HHHHH
Confidence 455667899999999999999833 32 11122334555555555555555555566655543 223333 34569
Q ss_pred hhhhhchhhHhHHHHHHHHHHH
Q psy3486 195 GKLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 195 akL~ld~~ey~~l~~~l~~L~~ 216 (222)
|.++...|+|+.....+++..+
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999888877654
No 88
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=67.85 E-value=4.9 Score=33.84 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhh-hhc
Q psy3486 2 DDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLI-KLI 80 (222)
Q Consensus 2 ~D~~I~~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~-~ii 80 (222)
+||+|+ |.-+|.+.+++.+-.++++-|....-.. -..|++..+..+= ...+ -+-
T Consensus 131 ~~~~I~-~al~l~~al~~GnY~kff~l~~~~p~~~----------------~~~~~~~l~~~vR--------~~~l~~i~ 185 (229)
T 4b0z_A 131 RDPYVE-WVISLEQNVMEGAFDKVASMIRSCNFPE----------------FSYFMKIVMSMVR--------NEIATCAE 185 (229)
T ss_dssp HCHHHH-HHHHHHHHHHTTCHHHHHHHHHTCCCGG----------------GHHHHHHHHHHHH--------HHHHHHHH
T ss_pred cCHHHH-HHHHHHHHHHcCCHHHHHHHHhcCccch----------------HHHHHHHHHHHHH--------HHHHHHHH
Confidence 367777 6677888999998888876665432111 0112222222111 2222 345
Q ss_pred cccccccHhHHHHHhCCC-hHHHHHHH
Q psy3486 81 KPYTRIHIPFISRQLNIE-TSDVESLL 106 (222)
Q Consensus 81 epys~v~i~~ia~~l~l~-~~~VE~~L 106 (222)
+.|++|.++++++.||++ .++++.-+
T Consensus 186 kaY~~i~l~~~~~~L~f~s~~e~~~f~ 212 (229)
T 4b0z_A 186 KVYSEIPLSNATSLLYLENTKETEKLA 212 (229)
T ss_dssp HHCSEEEHHHHHHHTTCSSHHHHHHHH
T ss_pred HHcCCCCHHHHHHHhCCCCHHHHHHHH
Confidence 699999999999999996 45666433
No 89
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=67.35 E-value=27 Score=25.88 Aligned_cols=89 Identities=7% Similarity=-0.053 Sum_probs=43.6
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKL 197 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL 197 (222)
...+|++++|+++|++.+..- +. ...+...+-..+....+.+--.+.|+..++.- ...+...| ..++.+
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~-~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~----~~~~~~ 191 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQ-PQ-----FPPAFKELARTKMLAGQLGDADYYFKKYQSRV-EVLQADDL----LLGWKI 191 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHH----HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CC-----CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHH----HHHHHH
Confidence 344556666666666665532 11 12222332222222223333334444444321 10223322 356777
Q ss_pred hhchhhHhHHHHHHHHHHHh
Q psy3486 198 YFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 198 ~ld~~ey~~l~~~l~~L~~~ 217 (222)
+...|+++......+.+.+.
T Consensus 192 ~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 192 AKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHh
Confidence 78888888888887777643
No 90
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=67.30 E-value=6.4 Score=27.66 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=37.4
Q ss_pred hhhhhhhccccc---cccHhHHHHHhCCChHHHHHHHHHHhhccceeeE
Q psy3486 73 SDVLIKLIKPYT---RIHIPFISRQLNIETSDVESLLVSLILDNTVRGR 118 (222)
Q Consensus 73 ~~~l~~iiepys---~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~ 118 (222)
++.|+.+++--. ++....||+.+|++...|...|..+-=++.|...
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 355666666666 8999999999999999999999988778887654
No 91
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=67.12 E-value=9.5 Score=29.02 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=18.5
Q ss_pred chhhhhhhhchhhHhHHHHHHHHHHHh
Q psy3486 191 NTKLGKLYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 191 nlKlakL~ld~~ey~~l~~~l~~L~~~ 217 (222)
...+|.+++..|+|++....+++..+.
T Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 128 FYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 445777777777777777776665544
No 92
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=66.95 E-value=14 Score=27.24 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=12.8
Q ss_pred EeeccchHHHHHHHHHHHh
Q psy3486 118 RIDQSNYKEMMSRYKQLLL 136 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLt 136 (222)
...+|+++++++.+++.+.
T Consensus 49 ~~~~~~~~~a~~~~~~~~~ 67 (184)
T 3vtx_A 49 YMDIGLPNDAIESLKKFVV 67 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHh
Confidence 3456777777777777665
No 93
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=66.70 E-value=19 Score=27.69 Aligned_cols=89 Identities=11% Similarity=0.153 Sum_probs=54.2
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKL 197 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL 197 (222)
.+.+|+|++|++.|++.+..- |. +.. .+...+-.......+.+--.+.|+..++. ..+ ...+...+|.+
T Consensus 17 ~~~~~~~~~A~~~~~~al~~~-~~---~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~----~~~~~~~l~~~ 85 (228)
T 4i17_A 17 ALNAKNYAVAFEKYSEYLKLT-NN---QDS-VTAYNCGVCADNIKKYKEAADYFDIAIKK--NYN----LANAYIGKSAA 85 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-TT---CCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCS----HHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcc-CC---CCc-HHHHHHHHHHHHhhcHHHHHHHHHHHHHh--Ccc----hHHHHHHHHHH
Confidence 457799999999999999854 20 111 22222222222233444444555555432 112 34456679999
Q ss_pred hhchhhHhHHHHHHHHHHHh
Q psy3486 198 YFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 198 ~ld~~ey~~l~~~l~~L~~~ 217 (222)
+...|+|++....+++..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~ 105 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA 105 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH
Confidence 99999999999888776553
No 94
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=66.65 E-value=22 Score=31.43 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=16.7
Q ss_pred eecchhhhhhhhchhhHhHHHHHHHHHHH
Q psy3486 188 FKTNTKLGKLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 188 fKtnlKlakL~ld~~ey~~l~~~l~~L~~ 216 (222)
..+...+|.++...|+++...+.+++..+
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34445566666666666666665555443
No 95
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=66.63 E-value=4.8 Score=28.69 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=25.5
Q ss_pred HHHHHHHhhccc------ccccHhHHHHHhccchhHHH
Q psy3486 18 RTQVLIKLIKPY------TRIHIPFISRQLNIETSDVL 49 (222)
Q Consensus 18 r~q~Ll~li~PY------sri~i~~ia~~l~l~~~~ve 49 (222)
|.+.++.+|+-+ -.+.+..||+.||+|...|.
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVr 42 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVR 42 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHH
Confidence 456677777777 67999999999999877655
No 96
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=65.98 E-value=27 Score=26.53 Aligned_cols=92 Identities=5% Similarity=0.089 Sum_probs=58.5
Q ss_pred eeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhh
Q psy3486 115 VRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKL 194 (222)
Q Consensus 115 ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKl 194 (222)
-...+.+|+|++|+++|++.+..- |. .......+-..+....+.+--.+.|+..++. ...+ ..+...+
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~~~-~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~----~~~~~~l 213 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIKRA-PE-----DARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNF----VRAYIRK 213 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC----HHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-cc-----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHH----HHHHHHH
Confidence 334457799999999999998844 32 1233444444333344554455555555553 2222 3345678
Q ss_pred hhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 195 GKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 195 akL~ld~~ey~~l~~~l~~L~~~c 218 (222)
|.++...|++++....++...+..
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999988887776654
No 97
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=65.94 E-value=18 Score=27.85 Aligned_cols=25 Identities=8% Similarity=0.286 Sum_probs=14.8
Q ss_pred hhhhhhhhchhhHhHHHHHHHHHHH
Q psy3486 192 TKLGKLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 192 lKlakL~ld~~ey~~l~~~l~~L~~ 216 (222)
..+|.++...|+|++....+++..+
T Consensus 179 ~~la~~~~~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 179 LEMADLLYKEREYVPARQYYDLFAQ 203 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666666666655555443
No 98
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=65.74 E-value=28 Score=29.66 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=18.3
Q ss_pred ecchhhhhhhhc---hhhHhHHHHHHHHHHH
Q psy3486 189 KTNTKLGKLYFD---REDFNKLSRILKQLHQ 216 (222)
Q Consensus 189 KtnlKlakL~ld---~~ey~~l~~~l~~L~~ 216 (222)
.+...+|.+++. .|+|++....++...+
T Consensus 413 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 413 APLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 355667777777 7777777666665543
No 99
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=65.44 E-value=28 Score=26.85 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=54.3
Q ss_pred eeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhh
Q psy3486 115 VRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKL 194 (222)
Q Consensus 115 ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKl 194 (222)
-.....+|+|++|+++|++.+..- |. ...+...+-..+....+.+--.++|+..++. ...+- .+...+
T Consensus 50 ~~~~~~~~~~~~A~~~~~~al~~~-~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~----~~~~~l 117 (275)
T 1xnf_A 50 GVLYDSLGLRALARNDFSQALAIR-PD-----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYN----YAHLNR 117 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCT----HHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHcC-CC-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--Ccccc----HHHHHH
Confidence 334556789999999999988842 32 1223333333333334444445555555543 22222 344568
Q ss_pred hhhhhchhhHhHHHHHHHHHHHh
Q psy3486 195 GKLYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 195 akL~ld~~ey~~l~~~l~~L~~~ 217 (222)
|.+++..|+|++....+++..+.
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 88888888888888877776553
No 100
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=65.36 E-value=9.7 Score=29.88 Aligned_cols=85 Identities=12% Similarity=0.086 Sum_probs=35.6
Q ss_pred eeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhhh
Q psy3486 119 IDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLY 198 (222)
Q Consensus 119 idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL~ 198 (222)
..+|++++|++.|++.+..- ....+..++-..+....+.+--...|+..++. ...+... ...+|.++
T Consensus 129 ~~~g~~~~A~~~~~~al~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~----~~~la~~~ 195 (217)
T 2pl2_A 129 ALLGERDKAEASLKQALALE-------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDL----RVRYASAL 195 (217)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHH----HHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH----HHHHHHHH
Confidence 45677788887777777621 12233333333222233444444555555542 2333333 34678888
Q ss_pred hchhhHhHHHHHHHHHHH
Q psy3486 199 FDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 199 ld~~ey~~l~~~l~~L~~ 216 (222)
...|+|+.....+++.|.
T Consensus 196 ~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 196 LLKGKAEEAARAAALEHH 213 (217)
T ss_dssp TC----------------
T ss_pred HHccCHHHHHHHHHHHhh
Confidence 888888888777777664
No 101
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=65.23 E-value=5.6 Score=27.02 Aligned_cols=34 Identities=6% Similarity=0.136 Sum_probs=25.0
Q ss_pred HHHHhhccc-ccccHhHHHHHhccchhHHHHhhhh
Q psy3486 21 VLIKLIKPY-TRIHIPFISRQLNIETSDVLIKLIK 54 (222)
Q Consensus 21 ~Ll~li~PY-sri~i~~ia~~l~l~~~~ve~klsd 54 (222)
.|+.+++.- ..+....||+.+|+|.+.|.+-+..
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~ 48 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYR 48 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 455566543 4599999999999999888755443
No 102
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=65.09 E-value=18 Score=28.57 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=22.4
Q ss_pred hhhhhhhhchhhHhHHHHHHHHHHHh
Q psy3486 192 TKLGKLYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 192 lKlakL~ld~~ey~~l~~~l~~L~~~ 217 (222)
..+|.+|+..|+|++.....+++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 67899999999999999888877653
No 103
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=64.23 E-value=6.4 Score=32.04 Aligned_cols=60 Identities=12% Similarity=0.066 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHhhcccccccHhHHHHHhccc-hhHHHHhhh-hhhHhhhhhhhhhhhhh
Q psy3486 11 EDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIE-TSDVLIKLI-KPYTRIHIPFISRQLNI 70 (222)
Q Consensus 11 ~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~-~~~ve~kls-d~il~~hl~~l~d~~~~ 70 (222)
+.+...||.=.|+.+..--..+..+.|++.+++| .++||.-+. +.|=.+-+.|-+||.+.
T Consensus 89 ~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~ 150 (169)
T 3chm_A 89 PDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKR 150 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCC
Confidence 4667788888888888778899999999999999 999999999 88888889999998643
No 104
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=64.00 E-value=8 Score=27.52 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=36.7
Q ss_pred hhhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhcccee
Q psy3486 74 DVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVR 116 (222)
Q Consensus 74 ~~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik 116 (222)
+.|+..|+-...|.++.+|+.++++...|..-|..+.-++.+.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3456677788999999999999999999998888888887764
No 105
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=63.93 E-value=13 Score=25.79 Aligned_cols=89 Identities=3% Similarity=-0.022 Sum_probs=48.2
Q ss_pred eccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhhhh
Q psy3486 120 DQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYF 199 (222)
Q Consensus 120 dqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL~l 199 (222)
.+|+|++|+++|++.+..- ..-.....+..++-..+....+.+--.+.|+..++. ...+ ..+...+|.++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~----~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNH----QALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC----HHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc----hHHHHHHHHHHH
Confidence 3688999999999998831 000112223333333222333444444445544442 2233 334556899999
Q ss_pred chhhHhHHHHHHHHHHHh
Q psy3486 200 DREDFNKLSRILKQLHQS 217 (222)
Q Consensus 200 d~~ey~~l~~~l~~L~~~ 217 (222)
..|+|++....+++..+.
T Consensus 73 ~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999998887766543
No 106
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=63.89 E-value=36 Score=24.08 Aligned_cols=89 Identities=11% Similarity=-0.005 Sum_probs=55.9
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKL 197 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL 197 (222)
...+|++++|+++|++.+..- +. .......+-..+....+.+--.+.|+..++. ...+.. +...+|.+
T Consensus 52 ~~~~~~~~~A~~~~~~~~~~~-~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~----~~~~~a~~ 119 (186)
T 3as5_A 52 YVKTGAVDRGTELLERSLADA-PD-----NVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--NPINFN----VRFRLGVA 119 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH----HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CC-----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcHhHH----HHHHHHHH
Confidence 345799999999999998853 21 2233344333333334444445555555553 222333 44678999
Q ss_pred hhchhhHhHHHHHHHHHHHhh
Q psy3486 198 YFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 198 ~ld~~ey~~l~~~l~~L~~~c 218 (222)
+...|+|++....+++..+.+
T Consensus 120 ~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 120 LDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCcHHHHHHHHHHHHhcC
Confidence 999999999988888776554
No 107
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=63.78 E-value=16 Score=31.13 Aligned_cols=99 Identities=13% Similarity=0.161 Sum_probs=58.6
Q ss_pred hhccceeeEeeccchHHHHHHHHHHHhhhhhccC----ccccH-------HHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q psy3486 110 ILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVT----RNYSE-------KSINSILDYISTSKNMELLQDFYETTLEAL 178 (222)
Q Consensus 110 iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVt----rNysE-------ksIn~iLd~vs~s~~~~~l~~fYe~TL~~l 178 (222)
.+...-...+.+|+|++|+.+|++.+.+...... ..+.+ .+.+++-..+....+.+--.+.|+..++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 259 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE- 259 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 3445556677899999999999999986522110 00000 12222222222333444444555555542
Q ss_pred hcCCCCceeeecchhhhhhhhchhhHhHHHHHHHHH
Q psy3486 179 KDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQL 214 (222)
Q Consensus 179 ~~~~NeRLWfKtnlKlakL~ld~~ey~~l~~~l~~L 214 (222)
...|. +....+|..|+..++|+.+...++..
T Consensus 260 -~p~~~----~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 260 -EEKNP----KALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp -CTTCH----HHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred -CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23343 44567999999999999988777654
No 108
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=63.70 E-value=21 Score=27.42 Aligned_cols=28 Identities=18% Similarity=-0.165 Sum_probs=21.9
Q ss_pred chhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 191 NTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 191 nlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
...++.++...|++++..+.++++.+..
T Consensus 212 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 212 LLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 3467888888999999888888776654
No 109
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=63.67 E-value=18 Score=28.20 Aligned_cols=87 Identities=7% Similarity=0.153 Sum_probs=44.3
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKL 197 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL 197 (222)
.+.+|+|++|+++|++.+. . + -+..+...+...+-..+....+.+--.+.|+..++. ...+. .+...+|.+
T Consensus 47 ~~~~~~~~~A~~~~~~a~~-~-~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~~----~~~~~l~~~ 117 (272)
T 3u4t_A 47 YYELAKYDLAQKDIETYFS-K-V-NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--DTTRL----DMYGQIGSY 117 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHT-T-S-CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCT----HHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHh-c-c-CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CcccH----HHHHHHHHH
Confidence 3456788888888888777 3 2 122232333333333333333444444444444442 11222 234457777
Q ss_pred hhchhhHhHHHHHHHH
Q psy3486 198 YFDREDFNKLSRILKQ 213 (222)
Q Consensus 198 ~ld~~ey~~l~~~l~~ 213 (222)
++..|+|++....+++
T Consensus 118 ~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 118 FYNKGNFPLAIQYMEK 133 (272)
T ss_dssp HHHTTCHHHHHHHHGG
T ss_pred HHHccCHHHHHHHHHH
Confidence 7777777766655543
No 110
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=63.62 E-value=6 Score=27.81 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=29.1
Q ss_pred HHHHHHhhcccc---cccHhHHHHHhccchhHHHHhhhhh
Q psy3486 19 TQVLIKLIKPYT---RIHIPFISRQLNIETSDVLIKLIKP 55 (222)
Q Consensus 19 ~q~Ll~li~PYs---ri~i~~ia~~l~l~~~~ve~klsd~ 55 (222)
++.|+.++.--. ++....||+.||+|...|..-|..+
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L 55 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 456667777777 9999999999999999887555444
No 111
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=63.61 E-value=15 Score=32.49 Aligned_cols=99 Identities=9% Similarity=0.076 Sum_probs=66.2
Q ss_pred cceeeEeeccchHHHHHHHHHHHhhhhhcc--CccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeec
Q psy3486 113 NTVRGRIDQSNYKEMMSRYKQLLLYIKSAV--TRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKT 190 (222)
Q Consensus 113 q~ik~~idqg~y~~~l~~y~~LLtyiksaV--trNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKt 190 (222)
....+...+|++++|++.|++++... +.. ..+......+.+.+.+....+.+--.++|+..++. ...+. .+
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~----~~ 552 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLV-KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--STNDA----NV 552 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSCCH----HH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhh-hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCh----HH
Confidence 34455667888999999999888854 322 22222456667777666556666666666665553 22233 34
Q ss_pred chhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 191 NTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 191 nlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
...+|.+|...|++++..+.+++..+..
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 5679999999999999999888876643
No 112
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=63.57 E-value=25 Score=28.93 Aligned_cols=28 Identities=7% Similarity=-0.011 Sum_probs=16.1
Q ss_pred chhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 191 NTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 191 nlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
...+|.+|...|+|.+....+++..+.+
T Consensus 284 ~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 284 RYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3446666666666666665555554443
No 113
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=63.30 E-value=9.5 Score=25.82 Aligned_cols=49 Identities=8% Similarity=0.196 Sum_probs=35.1
Q ss_pred hhhhhcccc-ccccHhHHHHHhCCChHHHHHHHHHHhhccceeeEeeccch
Q psy3486 75 VLIKLIKPY-TRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSNY 124 (222)
Q Consensus 75 ~l~~iiepy-s~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~idqg~y 124 (222)
.|+++++.- ..+....||+.+|+|...|...+..+--.+.|.. -..|.|
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~-~~~G~y 63 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS-PSPKYW 63 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE-EETTEE
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec-CCCceE
Confidence 355555432 3588999999999999999998888777777644 333443
No 114
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=63.03 E-value=9.1 Score=27.44 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=43.7
Q ss_pred hhhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeEeec-cch
Q psy3486 74 DVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQ-SNY 124 (222)
Q Consensus 74 ~~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~idq-g~y 124 (222)
+..+.-|+-=-.|.++.+|..+|++.+++-.++...--.+.+.|.+|- |.|
T Consensus 10 ~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKf 61 (72)
T 1wi9_A 10 TEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKF 61 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCE
T ss_pred HHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCE
Confidence 344566777788999999999999999999999999999999999974 654
No 115
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=62.61 E-value=4.7 Score=28.94 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=42.7
Q ss_pred HHHHHhhcccccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhh
Q psy3486 20 QVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISR 66 (222)
Q Consensus 20 q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d 66 (222)
+..+++|+-=..|-++.+|..||++.+++-.++.+.--..-|.|++|
T Consensus 10 ~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViD 56 (72)
T 1wi9_A 10 TEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVID 56 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEEC
T ss_pred HHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEe
Confidence 45677888888999999999999999999999999999999999987
No 116
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=62.42 E-value=6.2 Score=26.36 Aligned_cols=83 Identities=12% Similarity=0.036 Sum_probs=43.2
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhh
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGK 196 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlak 196 (222)
..+.+|+|++|++.|++.+..- |. ......++-..+....+.+--.+.|+..++.-.+..+...+.+....+|.
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~-p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 86 (111)
T 2l6j_A 13 SLFKQGLYREAVHCYDQLITAQ-PQ-----NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLEL 86 (111)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CC-----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence 4456899999999999999843 32 12333333332222334433444455444321111122333445556666
Q ss_pred hhhchhhHh
Q psy3486 197 LYFDREDFN 205 (222)
Q Consensus 197 L~ld~~ey~ 205 (222)
.+...|+++
T Consensus 87 ~~~~~~~~~ 95 (111)
T 2l6j_A 87 AQGAVGSVQ 95 (111)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHHhHh
Confidence 666666544
No 117
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=62.28 E-value=17 Score=29.92 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=55.7
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhh
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGK 196 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlak 196 (222)
..+.+|+|++|++.|++.+..- |. .....+++-..+....+.+--.+.|+..++. ...+ .+....+|.
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~-p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~----~~~~~~lg~ 80 (281)
T 2c2l_A 13 RLFVGRKYPEAAACYGRAITRN-PL-----VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQS----VKAHFFLGQ 80 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTC----HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-Cc-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCC----HHHHHHHHH
Confidence 3456899999999999999843 32 1223333333232333444444445444431 2222 355668999
Q ss_pred hhhchhhHhHHHHHHHHHHHh
Q psy3486 197 LYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 197 L~ld~~ey~~l~~~l~~L~~~ 217 (222)
++...|+|++....++...+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999888776554
No 118
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=61.59 E-value=3.3 Score=30.04 Aligned_cols=48 Identities=27% Similarity=0.254 Sum_probs=38.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHH
Q psy3486 2 DDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVL 49 (222)
Q Consensus 2 ~D~~I~~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve 49 (222)
.+|.+.+-+..+++..+-+.+..+..|=..+....||+.+|+|.+.|-
T Consensus 4 ~~~~~~~~~~~~~~~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~ 51 (110)
T 1q1h_A 4 AEDLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVR 51 (110)
T ss_dssp TTTHHHHHHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHH
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHH
Confidence 467788888888887777777777777767999999999999877754
No 119
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=61.46 E-value=31 Score=26.58 Aligned_cols=94 Identities=10% Similarity=0.044 Sum_probs=57.9
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhh
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGK 196 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlak 196 (222)
....+|+|++|++.|++.+... + .+......+...+-.......+.+--.+.|+..++. ...+.. +...+|.
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~----~~~~la~ 85 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASR-A-LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPE----VFNYLGI 85 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSS-C-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHH----HHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHhcc-c-ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHH----HHHHHHH
Confidence 3456799999999999999853 1 111222333444333333334444444555555443 223333 4456899
Q ss_pred hhhchhhHhHHHHHHHHHHHhh
Q psy3486 197 LYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 197 L~ld~~ey~~l~~~l~~L~~~c 218 (222)
++...|+|++..+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~al~~~ 107 (275)
T 1xnf_A 86 YLTQAGNFDAAYEAFDSVLELD 107 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHccCHHHHHHHHHHHHhcC
Confidence 9999999999998888776643
No 120
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=60.88 E-value=16 Score=30.87 Aligned_cols=100 Identities=8% Similarity=0.033 Sum_probs=56.0
Q ss_pred ceeeEeeccchHHHHHHHHHHHhhhhhc-cCccccHHHHH------HHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCce
Q psy3486 114 TVRGRIDQSNYKEMMSRYKQLLLYIKSA-VTRNYSEKSIN------SILDYISTSKNMELLQDFYETTLEALKDAKNDRL 186 (222)
Q Consensus 114 ~ik~~idqg~y~~~l~~y~~LLtyiksa-VtrNysEksIn------~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRL 186 (222)
...+...+|++++|++.|++.+..- |. .+-...-..+. ..........+.+--.+.|+..++. ...+...
T Consensus 217 l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~ 293 (450)
T 2y4t_A 217 ISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEY 293 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHH
Confidence 3344556788888888888887633 22 11000000010 0112222223333344455555442 2334555
Q ss_pred eeecchhhhhhhhchhhHhHHHHHHHHHHH
Q psy3486 187 WFKTNTKLGKLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 187 WfKtnlKlakL~ld~~ey~~l~~~l~~L~~ 216 (222)
|......+|.++...|+|++....+++..+
T Consensus 294 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 667778899999999999999888877654
No 121
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=60.82 E-value=16 Score=29.26 Aligned_cols=99 Identities=6% Similarity=0.116 Sum_probs=57.1
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccCc--cccHH-----HHHHHHHHhhcCCchHHHHHHHHHHHHHHh-----cCCCC
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVTR--NYSEK-----SINSILDYISTSKNMELLQDFYETTLEALK-----DAKND 184 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVtr--NysEk-----sIn~iLd~vs~s~~~~~l~~fYe~TL~~l~-----~~~Ne 184 (222)
..+..|+|++|+++|++-+.+- |..-. -..-. +-++.-.....-.+.+=--..|+-.|+.+. ...+-
T Consensus 20 ~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~ 98 (159)
T 2hr2_A 20 RQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 98 (159)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchH
Confidence 3567899999999999999977 43100 00000 111111111111233333344566665322 33445
Q ss_pred ceeeecchhhhhhhhchhhHhHHHHHHHHHHH
Q psy3486 185 RLWFKTNTKLGKLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 185 RLWfKtnlKlakL~ld~~ey~~l~~~l~~L~~ 216 (222)
..|.+.--.+|..+...|+|+..-.-.+...+
T Consensus 99 ~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 99 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66766667899999999999988766665543
No 122
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=60.64 E-value=22 Score=26.16 Aligned_cols=85 Identities=8% Similarity=0.069 Sum_probs=53.1
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhh
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGK 196 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlak 196 (222)
..+++|+|++|+++|++.+. +.|. ...+.+.+=..+....+.+--...|+..++. ..++-. +-..+|.
T Consensus 40 ~y~~~~~~~~A~~~~~~al~-~~p~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~----~~~~la~ 107 (150)
T 4ga2_A 40 LYYEAKEYDLAKKYICTYIN-VQER-----DPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKD----LVLKIAE 107 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH----HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH-hCCC-----CHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHH----HHHHHHH
Confidence 45678999999999999998 3342 2334444444333445555556666666653 333334 4456899
Q ss_pred hhhchhhHhHH-HHHHHH
Q psy3486 197 LYFDREDFNKL-SRILKQ 213 (222)
Q Consensus 197 L~ld~~ey~~l-~~~l~~ 213 (222)
+|++.+++... ...++.
T Consensus 108 ~~~~~~~~~~aa~~~~~~ 125 (150)
T 4ga2_A 108 LLCKNDVTDGRAKYWVER 125 (150)
T ss_dssp HHHHHCSSSSHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHH
Confidence 99999998653 333443
No 123
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=60.43 E-value=34 Score=22.60 Aligned_cols=87 Identities=17% Similarity=0.379 Sum_probs=52.7
Q ss_pred eeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhhh
Q psy3486 119 IDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLY 198 (222)
Q Consensus 119 idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL~ 198 (222)
...|++++|++.|++.+..- +. ...+.+.+-.......+.+--.+.|+..++. ...+...| ..+|.++
T Consensus 12 ~~~~~~~~A~~~~~~~~~~~-~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~----~~l~~~~ 79 (136)
T 2fo7_A 12 YKQGDYDEAIEYYQKALELD-PR-----SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAW----YNLGNAY 79 (136)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHH----HHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHcC-Cc-----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHH----HHHHHHH
Confidence 45688999999999988742 21 2234444444333334444455556555543 12223333 4678899
Q ss_pred hchhhHhHHHHHHHHHHHh
Q psy3486 199 FDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 199 ld~~ey~~l~~~l~~L~~~ 217 (222)
...|+|++..+.+++..+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALEL 98 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 9999999888887776554
No 124
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=60.36 E-value=8.4 Score=28.19 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=38.5
Q ss_pred hhhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeE
Q psy3486 74 DVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGR 118 (222)
Q Consensus 74 ~~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~ 118 (222)
+.|+..|+-...|.++.+|+.+|++...|..-|..+.-++.+.-.
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 346677788899999999999999999999999998888877654
No 125
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=60.22 E-value=7.7 Score=27.62 Aligned_cols=37 Identities=19% Similarity=0.097 Sum_probs=30.5
Q ss_pred HHHHHhhcccccccHhHHHHHhccchhHHHHhhhhhh
Q psy3486 20 QVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPY 56 (222)
Q Consensus 20 q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~i 56 (222)
+.|+++++-..+|+++.+|+.|++|.+.|..-|....
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le 41 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLE 41 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4577788888999999999999999999886655443
No 126
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=60.01 E-value=17 Score=31.06 Aligned_cols=93 Identities=10% Similarity=0.044 Sum_probs=60.1
Q ss_pred cceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecch
Q psy3486 113 NTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNT 192 (222)
Q Consensus 113 q~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnl 192 (222)
..-...+.+|+|++|++.|++.+..- | + ..+...+-..+....+.+--.+.|+..++. ..++ ..+..
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~-p----~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~----~~~~~ 77 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELK-E----D--PVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDY----SKVLL 77 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHC-C----C--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCC----HHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-c----c--HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHH----HHHHH
Confidence 33445567899999999999999943 3 1 344444444333334444444555555542 2222 35566
Q ss_pred hhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 193 KLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 193 KlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
.+|.++...|+|+.....++.+.+..
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 79999999999999998888765543
No 127
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=59.71 E-value=21 Score=32.29 Aligned_cols=95 Identities=11% Similarity=0.032 Sum_probs=57.2
Q ss_pred hccceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeec
Q psy3486 111 LDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKT 190 (222)
Q Consensus 111 Ldq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKt 190 (222)
+...-...+.+|+|++|+++|++.+..- |.- ..+.+++-..+....+.+--.+.|+..++. ...+ ..+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~----~~~ 76 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSN-----AIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKY----IKG 76 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTC----HHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-Ccc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCC----HHH
Confidence 4444455667899999999999998842 321 233333333333333444444455554442 2222 334
Q ss_pred chhhhhhhhchhhHhHHHHHHHHHHHh
Q psy3486 191 NTKLGKLYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 191 nlKlakL~ld~~ey~~l~~~l~~L~~~ 217 (222)
...+|.+|...|+|++..+.+++..+.
T Consensus 77 ~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 77 YYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 557888999999998888777765543
No 128
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=59.61 E-value=53 Score=24.68 Aligned_cols=92 Identities=8% Similarity=0.072 Sum_probs=53.6
Q ss_pred eeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhh
Q psy3486 115 VRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKL 194 (222)
Q Consensus 115 ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKl 194 (222)
......+|++++|+++|++.+..- +. .......+-..+....+.+--.+.|+..++. ...+.. +...+
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~-~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~----~~~~l 165 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG-ME-----NGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTE----ARFQF 165 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT-CC-----SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHH----HHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CC-----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHH----HHHHH
Confidence 344556677888888887777643 21 1223333333222333444444455554443 122333 44678
Q ss_pred hhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 195 GKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 195 akL~ld~~ey~~l~~~l~~L~~~c 218 (222)
|.+++..|+|++....+++..+..
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999998888776543
No 129
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=59.37 E-value=18 Score=28.94 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=23.3
Q ss_pred CCceeeecchhhhhhhhchhhHhHHHHHHHHHHHh
Q psy3486 183 NDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 183 NeRLWfKtnlKlakL~ld~~ey~~l~~~l~~L~~~ 217 (222)
+...|......+|.++...|+|++....+++..+.
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44555556666777777777777777776666543
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=58.68 E-value=34 Score=29.06 Aligned_cols=99 Identities=14% Similarity=0.156 Sum_probs=57.5
Q ss_pred hccceeeEeeccchHHHHHHHHHHHhhhhhccCcccc----------HHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhc
Q psy3486 111 LDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYS----------EKSINSILDYISTSKNMELLQDFYETTLEALKD 180 (222)
Q Consensus 111 Ldq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNys----------EksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~ 180 (222)
+...-...+.+|+|++|+++|++.+... +.-..... -.+.+++-..+....+.+--.+.|+..++. .
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 226 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--D 226 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 3444445667899999999999999965 32210000 122222222222233444444455555543 2
Q ss_pred CCCCceeeecchhhhhhhhchhhHhHHHHHHHHHHH
Q psy3486 181 AKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 181 ~~NeRLWfKtnlKlakL~ld~~ey~~l~~~l~~L~~ 216 (222)
..| .+....+|.+|+..++|++....++...+
T Consensus 227 p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 227 SNN----EKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233 34456789999999999988877766554
No 131
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=58.47 E-value=27 Score=27.84 Aligned_cols=93 Identities=13% Similarity=0.206 Sum_probs=57.3
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhh
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGK 196 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlak 196 (222)
..+.+|++++|++.|++.+... |. ...+.......+-..+....+.+--.+.|+..++. ...+ ..+...+|.
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~-~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~~~~ 314 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTE-PS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDN----VNALKDRAE 314 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-CS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC----HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--Cccc----HHHHHHHHH
Confidence 3567899999999999999844 32 11111122222222222334555555666666553 2223 335667999
Q ss_pred hhhchhhHhHHHHHHHHHHHh
Q psy3486 197 LYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 197 L~ld~~ey~~l~~~l~~L~~~ 217 (222)
++...|+|++....+++..+.
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhc
Confidence 999999999998888776543
No 132
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=56.98 E-value=52 Score=26.63 Aligned_cols=90 Identities=10% Similarity=0.011 Sum_probs=49.9
Q ss_pred eEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhh
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGK 196 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlak 196 (222)
....+|++++|+++|++.+..- |. ...+.+.+-..+....+.+--.+.|+..++. ...+. .+...+|.
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~~-~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~----~~~~~l~~ 293 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSVR-PN-----DYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYI----RSRYNLGI 293 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH----HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcH----HHHHHHHH
Confidence 3345677777777777777632 21 1223333333333334444444555554442 11222 34466888
Q ss_pred hhhchhhHhHHHHHHHHHHHhh
Q psy3486 197 LYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 197 L~ld~~ey~~l~~~l~~L~~~c 218 (222)
+++..|+|++....+++..+..
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC
Confidence 8888888888887777665543
No 133
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=56.52 E-value=9 Score=28.03 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=29.7
Q ss_pred HHHHHhhcccccccHhHHHHHhccchhHHHHhhhhh
Q psy3486 20 QVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKP 55 (222)
Q Consensus 20 q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~ 55 (222)
+.|+++++-..+|+++.+|+.|++|...|..-|...
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~L 40 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERM 40 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 457778888899999999999999999888655544
No 134
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=56.32 E-value=37 Score=27.88 Aligned_cols=88 Identities=13% Similarity=0.088 Sum_probs=58.1
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKL 197 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL 197 (222)
.+.+|+|++|++.|++.+..- |. ...+.+.+-..+....+.+--.+.|+..++. ..++ ..+...+|.+
T Consensus 75 ~~~~g~~~~A~~~~~~al~~~-p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~----~~~~~~l~~~ 142 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAILQD-PG-----DAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNN----LKALMALAVS 142 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC----HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC----HHHHHHHHHH
Confidence 356799999999999999843 32 2344555554444444554445555555543 2223 3345679999
Q ss_pred hhchhhHhHHHHHHHHHHHh
Q psy3486 198 YFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 198 ~ld~~ey~~l~~~l~~L~~~ 217 (222)
|...|+|++....+++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~ 162 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ 162 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh
Confidence 99999999999888776553
No 135
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=56.19 E-value=8 Score=29.22 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=29.5
Q ss_pred eeccchHHHHHHHHHHHhhhhhccCccccHHHHHH
Q psy3486 119 IDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINS 153 (222)
Q Consensus 119 idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~ 153 (222)
+..|.||+|+++++.-.+|+..|...--|+++.-+
T Consensus 26 l~~gkydeAIech~kAa~yL~eAmkltqs~qa~~S 60 (97)
T 2crb_A 26 LAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLS 60 (97)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 45699999999999999999888777788886553
No 136
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=56.18 E-value=5.2 Score=28.50 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=36.3
Q ss_pred hHHHHHhCCChHHHHHHHHHHhhccceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHH
Q psy3486 89 PFISRQLNIETSDVESLLVSLILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSIN 152 (222)
Q Consensus 89 ~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn 152 (222)
.++.+-+.++...+...+ .+ =...+.+|+|++|+++|++++.--.++..|.-.+.+|+
T Consensus 30 ~~l~~AL~~dp~~~rA~~-~l-----g~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~~I~ 87 (93)
T 3bee_A 30 LLLEQALQLEPYNEAALS-LI-----ANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIESIN 87 (93)
T ss_dssp HHHHHHHHHCTTCHHHHH-HH-----HHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCcCCHHHHH-HH-----HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 345566666777666321 11 22346789999999999999996533344444444444
No 137
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=56.06 E-value=26 Score=26.26 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=54.7
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKL 197 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL 197 (222)
.+.+|+|++|++.|++.+. + ...+.+++-..+....+.+--.+.|+..++. ...+. .....+|.+
T Consensus 16 ~~~~~~~~~A~~~~~~a~~---~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~----~~~~~lg~~ 80 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAVQD---P------HSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLA----VAYFQRGML 80 (213)
T ss_dssp HHHTTCHHHHHHHHHTSSS---C------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH----HHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHcC---C------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Cccch----HHHHHHHHH
Confidence 3467999999999998742 1 2234444444333334544445555555543 22232 345679999
Q ss_pred hhchhhHhHHHHHHHHHHHhh
Q psy3486 198 YFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 198 ~ld~~ey~~l~~~l~~L~~~c 218 (222)
++..|+|+.....++...+.+
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~ 101 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQL 101 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcccHHHHHHHHHHHHHhC
Confidence 999999999998887776643
No 138
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=55.01 E-value=40 Score=21.83 Aligned_cols=65 Identities=18% Similarity=0.112 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhcccc
Q psy3486 4 PFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPY 83 (222)
Q Consensus 4 ~~I~~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepy 83 (222)
..+...+..-++.+|.+. .++...+|+.+|+|.+.|-.-.. | -.+.
T Consensus 5 ~~~~~~~~~~l~~~r~~~---------glsq~~lA~~~gis~~~i~~~e~---------g----------------~~~~ 50 (77)
T 2b5a_A 5 IEIKRKFGRTLKKIRTQK---------GVSQEELADLAGLHRTYISEVER---------G----------------DRNI 50 (77)
T ss_dssp HHHHHHHHHHHHHHHHHT---------TCCHHHHHHHHTCCHHHHHHHHT---------T----------------CSCC
T ss_pred HHHHHHHHHHHHHHHHHc---------CCCHHHHHHHHCCCHHHHHHHHC---------C----------------CCCC
Confidence 344566666666666552 56788899999998776542111 0 0122
Q ss_pred ccccHhHHHHHhCCChHHH
Q psy3486 84 TRIHIPFISRQLNIETSDV 102 (222)
Q Consensus 84 s~v~i~~ia~~l~l~~~~V 102 (222)
+.-.+..||+.+|++.+.+
T Consensus 51 ~~~~l~~la~~l~~~~~~l 69 (77)
T 2b5a_A 51 SLINIHKICAALDIPASTF 69 (77)
T ss_dssp BHHHHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHhCcCHHHH
Confidence 4445667889999987654
No 139
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=54.81 E-value=40 Score=26.58 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=60.0
Q ss_pred ceeeEeeccchHHHHHHHHHHHhhhhhccCc----cccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeee
Q psy3486 114 TVRGRIDQSNYKEMMSRYKQLLLYIKSAVTR----NYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFK 189 (222)
Q Consensus 114 ~ik~~idqg~y~~~l~~y~~LLtyiksaVtr----NysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfK 189 (222)
.......+|++++|+++|++.+.... .... .....+...+-..+....+.+--.+.|+..++. ...+. .
T Consensus 199 l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~----~ 271 (330)
T 3hym_B 199 VGVVAFQNGEWKTAEKWFLDALEKIK-AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNA----S 271 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHT-TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCS----H
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHhh-hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--Cccch----H
Confidence 33445678999999999999999653 2221 122334455544444444555555556555543 22233 3
Q ss_pred cchhhhhhhhchhhHhHHHHHHHHHHH
Q psy3486 190 TNTKLGKLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 190 tnlKlakL~ld~~ey~~l~~~l~~L~~ 216 (222)
+...+|.++...|+|.+....+++..+
T Consensus 272 ~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 272 TYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 445689999999999998877765443
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=54.17 E-value=52 Score=23.23 Aligned_cols=85 Identities=12% Similarity=0.003 Sum_probs=50.8
Q ss_pred eeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhhh
Q psy3486 119 IDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLY 198 (222)
Q Consensus 119 idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL~ 198 (222)
+.+|++++|+..|++.+..- |. . ..+...+=.......+.+--...|+..++. ...+...| ..+|.++
T Consensus 28 ~~~g~~~~A~~~~~~al~~~-P~----~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~----~~la~~~ 95 (121)
T 1hxi_A 28 LKLANLAEAALAFEAVCQKE-PE----R-EEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVH----AALAVSH 95 (121)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TT----C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH----HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC-CC----C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH----HHHHHHH
Confidence 45799999999999999833 42 1 122222211111223333334445544442 33344444 6799999
Q ss_pred hchhhHhHHHHHHHHHH
Q psy3486 199 FDREDFNKLSRILKQLH 215 (222)
Q Consensus 199 ld~~ey~~l~~~l~~L~ 215 (222)
...|++++....++...
T Consensus 96 ~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 96 TNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 99999999888777654
No 141
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=54.16 E-value=42 Score=25.89 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=50.6
Q ss_pred eeccchHHHHHHHHHHHhhhhhccCccccH------HHHHH-----HHHHhhcCCchHHHHHHHHHHHHHHhcCCCCcee
Q psy3486 119 IDQSNYKEMMSRYKQLLLYIKSAVTRNYSE------KSINS-----ILDYISTSKNMELLQDFYETTLEALKDAKNDRLW 187 (222)
Q Consensus 119 idqg~y~~~l~~y~~LLtyiksaVtrNysE------ksIn~-----iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLW 187 (222)
+++|+|++|++.|++.+..- |.-...+.- ..++. +=..+....+.+--...|+..++. ..++-
T Consensus 15 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~--- 88 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNV--- 88 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH---
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH---
Confidence 46799999999999998833 321000000 00000 111111223444444555555442 22333
Q ss_pred eecchhhhhhhhchhhHhHHHHHHHHHHH
Q psy3486 188 FKTNTKLGKLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 188 fKtnlKlakL~ld~~ey~~l~~~l~~L~~ 216 (222)
.....+|.+++..|+|++.....+...+
T Consensus 89 -~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 89 -DCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445689999999999988877776644
No 142
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=53.91 E-value=53 Score=25.84 Aligned_cols=87 Identities=13% Similarity=0.020 Sum_probs=55.9
Q ss_pred eeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhhh
Q psy3486 119 IDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLY 198 (222)
Q Consensus 119 idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL~ 198 (222)
+.+|+|++|++.|++.+..- |. ...+...+-.......+.+--.+.|+..++. ...+. .+...+|.++
T Consensus 32 ~~~~~~~~A~~~~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~----~~~~~la~~~ 99 (327)
T 3cv0_A 32 LKLANLAEAALAFEAVCQAA-PE-----REEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDI----AVHAALAVSH 99 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH----HHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCH----HHHHHHHHHH
Confidence 45799999999999998843 32 2233334333333344544445555555543 22232 3456789999
Q ss_pred hchhhHhHHHHHHHHHHHh
Q psy3486 199 FDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 199 ld~~ey~~l~~~l~~L~~~ 217 (222)
...|+|++....+++..+.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~ 118 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLS 118 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999888877654
No 143
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=53.68 E-value=9.5 Score=27.35 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhhcccccc-cHhHHHHHhccchhHHHH
Q psy3486 10 IEDLLRNIRTQVLIKLIKPYTRI-HIPFISRQLNIETSDVLI 50 (222)
Q Consensus 10 i~~L~~~lr~q~Ll~li~PYsri-~i~~ia~~l~l~~~~ve~ 50 (222)
.+.+++.++.+.+-..+.|=.++ ....+|+.+|+|...|-.
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~ 54 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSR 54 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHH
Confidence 35688888888777788899999 999999999998777653
No 144
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=53.67 E-value=19 Score=22.18 Aligned_cols=43 Identities=2% Similarity=0.104 Sum_probs=27.3
Q ss_pred cccHhHHHHHhCCChHHHHHHHHHHhhccceeeEeeccchHHH
Q psy3486 85 RIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSNYKEM 127 (222)
Q Consensus 85 ~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~idqg~y~~~ 127 (222)
.+.+..+|+++|++..++-..+..+-....-...+....++..
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~~g~~k~~~s~l~~~~~~~l 44 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFADAGIRKSADDSVSAQEKQTL 44 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHHHTSCCSSSSCEETTGGGHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHcCCCCCCCCcCCHHHHHHH
Confidence 3567789999999999888777765542222233444444433
No 145
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=53.64 E-value=46 Score=26.18 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=11.7
Q ss_pred EeeccchHHHHHHHHHHHh
Q psy3486 118 RIDQSNYKEMMSRYKQLLL 136 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLt 136 (222)
...+|++++|+++|++.+.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~ 166 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALE 166 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHh
Confidence 3455666666666666665
No 146
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=52.75 E-value=19 Score=23.54 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=24.2
Q ss_pred HHHHHHHhhcccccccHhHHHHHhccchhHHHHh
Q psy3486 18 RTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIK 51 (222)
Q Consensus 18 r~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~k 51 (222)
+++.++.++ +.......||+.+|+|...|...
T Consensus 15 ~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~ 46 (74)
T 1fse_A 15 REREVFELL--VQDKTTKEIASELFISEKTVRNH 46 (74)
T ss_dssp HHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHH
Confidence 455566665 56678999999999999887743
No 147
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=52.63 E-value=15 Score=26.22 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=27.2
Q ss_pred HHHHHHHHhhcccccccHhHHHHHhccchhHHHHh
Q psy3486 17 IRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIK 51 (222)
Q Consensus 17 lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~k 51 (222)
=+++.++.++ +.-.....||+.+|+|...|...
T Consensus 30 ~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~ 62 (95)
T 3c57_A 30 DQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNY 62 (95)
T ss_dssp HHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHH
Confidence 3677777776 88889999999999999987743
No 148
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=52.45 E-value=18 Score=25.05 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=25.6
Q ss_pred HHHHHHHhhcccccccHhHHHHHhccchhHHHHh
Q psy3486 18 RTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIK 51 (222)
Q Consensus 18 r~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~k 51 (222)
+++.++.++ +.-.....||+.+|+|...|...
T Consensus 25 ~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~ 56 (82)
T 1je8_A 25 RERDILKLI--AQGLPNKMIARRLDITESTVKVH 56 (82)
T ss_dssp HHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHH
Confidence 556666665 68889999999999999987743
No 149
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=52.15 E-value=22 Score=26.14 Aligned_cols=44 Identities=18% Similarity=0.068 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cHhHHHHHhccchhHHHHhhhh
Q psy3486 11 EDLLRNIRTQVLIKLIKPYTRI-HIPFISRQLNIETSDVLIKLIK 54 (222)
Q Consensus 11 ~~L~~~lr~q~Ll~li~PYsri-~i~~ia~~l~l~~~~ve~klsd 54 (222)
+.+++.|+...+-.-+.|=+++ ....+|+.+|+|...|..-+..
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~ 56 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQS 56 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 5688899999888899999999 9999999999998877654433
No 150
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=51.05 E-value=16 Score=23.21 Aligned_cols=30 Identities=27% Similarity=0.210 Sum_probs=21.6
Q ss_pred HHHHHHhhcccccccHhHHHHHhccchhHHHH
Q psy3486 19 TQVLIKLIKPYTRIHIPFISRQLNIETSDVLI 50 (222)
Q Consensus 19 ~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~ 50 (222)
++.++.++ +.-.....||+.+|+|...|..
T Consensus 3 e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~ 32 (61)
T 2jpc_A 3 ERQVLKLI--DEGYTNHGISEKLHISIKTVET 32 (61)
T ss_dssp HHHHHHHH--HTSCCSHHHHHHTCSCHHHHHH
T ss_pred HHHHHHHH--HcCCCHHHHHHHhCCCHHHHHH
Confidence 34444443 4556778999999999998774
No 151
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=50.44 E-value=21 Score=23.76 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=25.6
Q ss_pred HHHHHHHhhcccccccHhHHHHHhccchhHHHH
Q psy3486 18 RTQVLIKLIKPYTRIHIPFISRQLNIETSDVLI 50 (222)
Q Consensus 18 r~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~ 50 (222)
+++.++.++ +.-.....||+.+|+|...|..
T Consensus 20 ~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~ 50 (79)
T 1x3u_A 20 RERQVLSAV--VAGLPNKSIAYDLDISPRTVEV 50 (79)
T ss_dssp HHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHH
Confidence 566677775 7888999999999999988774
No 152
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=49.88 E-value=60 Score=26.28 Aligned_cols=89 Identities=9% Similarity=0.056 Sum_probs=57.8
Q ss_pred eeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhhh
Q psy3486 119 IDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLY 198 (222)
Q Consensus 119 idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL~ 198 (222)
+.+|++++|++.|++.+..- |... .....+.+-..+....+.+--.+.|+..++. ...+.. +...+|.++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~-p~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~----~~~~l~~~~ 261 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLD-PTSI---DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYL----LWNKLGATL 261 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-TTSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH----HHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhC-cCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHH----HHHHHHHHH
Confidence 36799999999999999843 3211 3344455555444444555555556655543 222323 446789999
Q ss_pred hchhhHhHHHHHHHHHHHh
Q psy3486 199 FDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 199 ld~~ey~~l~~~l~~L~~~ 217 (222)
...|+|++....+++..+.
T Consensus 262 ~~~g~~~~A~~~~~~al~~ 280 (368)
T 1fch_A 262 ANGNQSEEAVAAYRRALEL 280 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999998888776543
No 153
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=49.67 E-value=28 Score=32.08 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=72.2
Q ss_pred ccceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecc
Q psy3486 112 DNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTN 191 (222)
Q Consensus 112 dq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtn 191 (222)
.-.|.+..+.|++++|++.+++|... .+.. ...+-|.++..+....+.+-..++|+...+. .-....-|.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~---g~~P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----G~~Pd~~ty 178 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAF---GIQP--RLRSYGPALFGFCRKGDADKAYEVDAHMVES-----EVVPEEPEL 178 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHT---TCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCCCCHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC--ccceehHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCCHHHH
Confidence 34577888899999999999998763 2222 3456789999888887877777777766542 223334455
Q ss_pred hhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 192 TKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 192 lKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
.-|.+.+...|+++++.++++++++.-
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 668888999999999999999988653
No 154
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=48.33 E-value=45 Score=29.73 Aligned_cols=100 Identities=9% Similarity=0.109 Sum_probs=57.1
Q ss_pred hhccceeeEeeccchHHHHHHHHHHHhhhhhccCc-c-cc--------HHHHHHHHHHhhcCCchHHHHHHHHHHHHHHh
Q psy3486 110 ILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTR-N-YS--------EKSINSILDYISTSKNMELLQDFYETTLEALK 179 (222)
Q Consensus 110 iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtr-N-ys--------EksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~ 179 (222)
++...-...+.+|+|++|+.+|++.+.+. +.-.. . .. ..+.+++-..+....+.+--...|+..++.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 346 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-- 346 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 34444555678899999999999999966 32210 0 00 111112111111223433334445444442
Q ss_pred cCCCCceeeecchhhhhhhhchhhHhHHHHHHHHHHH
Q psy3486 180 DAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 180 ~~~NeRLWfKtnlKlakL~ld~~ey~~l~~~l~~L~~ 216 (222)
..+| .+....+|..|+..++|+.+...++...+
T Consensus 347 ~p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 347 DSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp STTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2233 45566789999999999988877766543
No 155
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=48.15 E-value=23 Score=26.75 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=38.8
Q ss_pred hhhhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeE
Q psy3486 73 SDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGR 118 (222)
Q Consensus 73 ~~~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~ 118 (222)
+..|++.+....++....||+.+|++...|-..+..+.=.+.|...
T Consensus 7 d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 7 DLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3456677777788999999999999999999999998888888754
No 156
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=48.12 E-value=17 Score=26.67 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=32.0
Q ss_pred HHHHH--HHHHHHHhhcccccc-cHhHHHHHhccchhHHHHhh
Q psy3486 13 LLRNI--RTQVLIKLIKPYTRI-HIPFISRQLNIETSDVLIKL 52 (222)
Q Consensus 13 L~~~l--r~q~Ll~li~PYsri-~i~~ia~~l~l~~~~ve~kl 52 (222)
.|+.+ +.+.+ ..+.|=.++ ....+|+.+|+|...|-.-|
T Consensus 23 ~y~~l~i~~~I~-~~l~~g~~lps~~eLa~~lgVSr~tVr~al 64 (102)
T 2b0l_A 23 SYSELEAIEHIF-EELDGNEGLLVASKIADRVGITRSVIVNAL 64 (102)
T ss_dssp CHHHHHHHHHHT-TSSBTTEEEECHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhhcCCCcCCCHHHHHHHHCcCHHHHHHHH
Confidence 46666 87777 888999998 99999999999988766443
No 157
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=47.50 E-value=45 Score=28.69 Aligned_cols=30 Identities=10% Similarity=0.187 Sum_probs=23.5
Q ss_pred ecchhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 189 KTNTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 189 KtnlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
.+...+|.+|...|+|++....+++..+.+
T Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 463 QAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 345778999999999999888887766544
No 158
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=47.41 E-value=24 Score=26.75 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=38.7
Q ss_pred hhhhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeE
Q psy3486 73 SDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGR 118 (222)
Q Consensus 73 ~~~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~ 118 (222)
+..|++.+..-.++....||+.+|++...|-..+..+.-++.+...
T Consensus 11 d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 11 DMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3456677777789999999999999999999999888888888754
No 159
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=47.37 E-value=18 Score=25.39 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=25.1
Q ss_pred HHHHHHHhhcccccccHhHHHHHhccchhHHHH
Q psy3486 18 RTQVLIKLIKPYTRIHIPFISRQLNIETSDVLI 50 (222)
Q Consensus 18 r~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~ 50 (222)
+++.++.++ +.-.....||+.+|+|...|..
T Consensus 33 ~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~ 63 (91)
T 2rnj_A 33 REMEILLLI--AKGYSNQEIASASHITIKTVKT 63 (91)
T ss_dssp HHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHH
Confidence 466666665 7788899999999999998774
No 160
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=47.26 E-value=87 Score=23.40 Aligned_cols=45 Identities=9% Similarity=0.142 Sum_probs=37.3
Q ss_pred hccccccc-cHhHHHHHhCCChHHHHHHHHHHhhccceeeEeeccc
Q psy3486 79 LIKPYTRI-HIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123 (222)
Q Consensus 79 iiepys~v-~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~idqg~ 123 (222)
-+.|=+++ ....+|+.+|++...|-.-+..+.-++.|...-..|.
T Consensus 31 ~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~ 76 (134)
T 4ham_A 31 VLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGKGT 76 (134)
T ss_dssp SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred CCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEE
Confidence 46788888 6888999999999999999999999999875554443
No 161
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=47.17 E-value=61 Score=25.10 Aligned_cols=82 Identities=9% Similarity=0.020 Sum_probs=52.3
Q ss_pred cchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhhhhch
Q psy3486 122 SNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDR 201 (222)
Q Consensus 122 g~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL~ld~ 201 (222)
|++++|++.|++.+.. .|. + ..+...+=..+....+.+--.+.|+..++.- .+...| ..+|.+|...
T Consensus 98 g~~~~A~~~~~~al~~-~P~----~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~----~~la~~~~~~ 164 (217)
T 2pl2_A 98 GYLEQALSVLKDAERV-NPR----Y-APLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIR----SALAELYLSM 164 (217)
T ss_dssp HHHHHHHHHHHHHHHH-CTT----C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHH----HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh-Ccc----c-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHH----HHHHHHHHHc
Confidence 9999999999999983 342 2 2233332222223344444455666665532 334444 5799999999
Q ss_pred hhHhHHHHHHHHHHH
Q psy3486 202 EDFNKLSRILKQLHQ 216 (222)
Q Consensus 202 ~ey~~l~~~l~~L~~ 216 (222)
|+|+.....++...+
T Consensus 165 g~~~~A~~~~~~al~ 179 (217)
T 2pl2_A 165 GRLDEALAQYAKALE 179 (217)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999998877776654
No 162
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=46.96 E-value=82 Score=27.03 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=14.4
Q ss_pred eEeeccchHHHHHHHHHHHhh
Q psy3486 117 GRIDQSNYKEMMSRYKQLLLY 137 (222)
Q Consensus 117 ~~idqg~y~~~l~~y~~LLty 137 (222)
....+|+|++|++.|++.+..
T Consensus 319 ~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 319 MYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHh
Confidence 344667777777777777763
No 163
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=46.90 E-value=41 Score=30.01 Aligned_cols=86 Identities=9% Similarity=-0.045 Sum_probs=47.0
Q ss_pred cchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHh-----hcCC---chHHHHHHHHHHHHHHhcCCCCceeeecchh
Q psy3486 122 SNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYI-----STSK---NMELLQDFYETTLEALKDAKNDRLWFKTNTK 193 (222)
Q Consensus 122 g~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~v-----s~s~---~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlK 193 (222)
|+|++|+++|++.+..- |.- ..+.+.+-..+ ..+. +.+--.+.|+..++. .. ..+-...+...
T Consensus 193 g~~~~A~~~~~~al~~~-p~~-----~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p-~~~~~~~~~~~ 263 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMD-VLD-----GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DR-KASSNPDLHLN 263 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-TTC-----HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CG-GGGGCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCC-----HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CC-CcccCHHHHHH
Confidence 99999999999999843 321 12222222211 1111 122222333333332 22 00122334456
Q ss_pred hhhhhhchhhHhHHHHHHHHHHH
Q psy3486 194 LGKLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 194 lakL~ld~~ey~~l~~~l~~L~~ 216 (222)
+|.+|...|+|++....+++..+
T Consensus 264 lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 264 RATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999999999998877776544
No 164
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=46.29 E-value=26 Score=26.39 Aligned_cols=45 Identities=13% Similarity=0.179 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhhcccccc-cHhHHHHHhccchhHHHHhhhh
Q psy3486 10 IEDLLRNIRTQVLIKLIKPYTRI-HIPFISRQLNIETSDVLIKLIK 54 (222)
Q Consensus 10 i~~L~~~lr~q~Ll~li~PYsri-~i~~ia~~l~l~~~~ve~klsd 54 (222)
-+.+++.|+...+-.-+.|=+++ ....+|+.+|+|...|..-+..
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~ 58 (126)
T 3by6_A 13 YLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKE 58 (126)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 35688999999888899999999 9999999999998887755544
No 165
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=46.06 E-value=58 Score=26.98 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=11.7
Q ss_pred EeeccchHHHHHHHHHHHh
Q psy3486 118 RIDQSNYKEMMSRYKQLLL 136 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLt 136 (222)
...+|++++|++.|++.+.
T Consensus 247 ~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 3455666666666666665
No 166
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=45.48 E-value=89 Score=26.47 Aligned_cols=21 Identities=5% Similarity=-0.010 Sum_probs=14.4
Q ss_pred eeccchHHHHHHHHHHHhhhh
Q psy3486 119 IDQSNYKEMMSRYKQLLLYIK 139 (222)
Q Consensus 119 idqg~y~~~l~~y~~LLtyik 139 (222)
..+|+|++|+++|++-+...+
T Consensus 62 ~~~G~~~eAl~~~~kAl~~~~ 82 (472)
T 4g1t_A 62 HLKGQNEAALECLRKAEELIQ 82 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHH
Confidence 345777888887777776543
No 167
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=45.02 E-value=19 Score=24.65 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=22.2
Q ss_pred HHHhhcccccccHhHHHHHhccchhHHHHhhh
Q psy3486 22 LIKLIKPYTRIHIPFISRQLNIETSDVLIKLI 53 (222)
Q Consensus 22 Ll~li~PYsri~i~~ia~~l~l~~~~ve~kls 53 (222)
++.++..-..+....||+.+|+|.+.|-.-|.
T Consensus 5 Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~ 36 (81)
T 2htj_A 5 ILEFLNRHNGGKTAEIAEALAVTDYQARYYLL 36 (81)
T ss_dssp HHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33444333568999999999999887654433
No 168
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=45.01 E-value=45 Score=24.21 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=39.7
Q ss_pred ccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCCh
Q psy3486 30 TRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIET 99 (222)
Q Consensus 30 sri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~ 99 (222)
..+.++.+|+.+|+|...+...+.+ . ..-....++.+ +++ ...+.++ .+...|..||..+|...
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~-~-G~s~~~~~~~~--Rl~-~A~~lL~-~~~~si~eIA~~~Gf~~ 85 (120)
T 3mkl_A 22 HEWTLARIASELLMSPSLLKKKLRE-E-ETSYSQLLTEC--RMQ-RALQLIV-IHGFSIKRVAVSCGYHS 85 (120)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHH-T-TCCHHHHHHHH--HHH-HHHHHHT-STTCCHHHHHHHTTCSC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH-c-CCCHHHHHHHH--HHH-HHHHHHH-cCCCCHHHHHHHHCCCC
Confidence 4689999999999999887766654 2 33444444432 222 1222332 34667788888888664
No 169
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=44.99 E-value=19 Score=27.31 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=30.4
Q ss_pred HHHHHHhhcccccccHhHHHHHhccchhHHHHhhhhhh
Q psy3486 19 TQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPY 56 (222)
Q Consensus 19 ~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~i 56 (222)
.+.++..+..-.++....||+.+|+|.+.|-..+..+-
T Consensus 11 d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~ 48 (151)
T 2dbb_A 11 DMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLK 48 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34577777888899999999999999998876655554
No 170
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=44.96 E-value=85 Score=23.80 Aligned_cols=91 Identities=12% Similarity=0.010 Sum_probs=53.2
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCcee---eecchhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLW---FKTNTKL 194 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLW---fKtnlKl 194 (222)
...+|+|++|+++|++.+..- |. ...+...+-..+....+.+--.+.|+..++. ..+|..+| ..+...+
T Consensus 52 ~~~~~~~~~A~~~~~~al~~~-p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~ 123 (228)
T 4i17_A 52 ADNIKKYKEAADYFDIAIKKN-YN-----LANAYIGKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKE 123 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT-CS-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHH
T ss_pred HHHhhcHHHHHHHHHHHHHhC-cc-----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHH
Confidence 345799999999999999733 32 1223333323222333444444444444442 22233221 1356678
Q ss_pred hhhhhchhhHhHHHHHHHHHHH
Q psy3486 195 GKLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 195 akL~ld~~ey~~l~~~l~~L~~ 216 (222)
|.+++..|+|++.....++..+
T Consensus 124 g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 124 GQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTT
T ss_pred hHHHHHhccHHHHHHHHHHHHh
Confidence 9999999999998877766543
No 171
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=44.73 E-value=19 Score=27.20 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=28.6
Q ss_pred HHHHHhhcccccccHhHHHHHhccchhHHHHhhhhh
Q psy3486 20 QVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKP 55 (222)
Q Consensus 20 q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~ 55 (222)
..++..+....++....||+.+|+|.+.|-..+..+
T Consensus 8 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 43 (144)
T 2cfx_A 8 LNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQL 43 (144)
T ss_dssp HHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 456777777789999999999999998877555444
No 172
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=44.71 E-value=25 Score=27.25 Aligned_cols=46 Identities=7% Similarity=0.234 Sum_probs=39.5
Q ss_pred hhhhhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceee
Q psy3486 72 TSDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRG 117 (222)
Q Consensus 72 ~~~~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~ 117 (222)
++..|++.+.-=.++-...||+.+|++...|-..+..+-=++.|++
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeee
Confidence 3456778888888999999999999999999999999888888774
No 173
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=44.63 E-value=27 Score=26.46 Aligned_cols=45 Identities=7% Similarity=0.173 Sum_probs=38.1
Q ss_pred hhhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeE
Q psy3486 74 DVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGR 118 (222)
Q Consensus 74 ~~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~ 118 (222)
..|++.+..-.++....+|+.+|++...|-..+..+.-.+.|.+.
T Consensus 11 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 11 RGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceE
Confidence 456667777788999999999999999999999998888888763
No 174
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=43.98 E-value=22 Score=24.54 Aligned_cols=44 Identities=14% Similarity=0.242 Sum_probs=29.9
Q ss_pred cccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCChHHH
Q psy3486 31 RIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDV 102 (222)
Q Consensus 31 ri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~~~V 102 (222)
.+++..+|+.+|++.+.|-.-+. .|+-..+.- ||+.+|++++.+
T Consensus 22 glT~~~LA~~~Gvs~stls~~~~---------------------------~~~p~~~~~-IA~aLgv~~~~L 65 (74)
T 1neq_A 22 KLSLSALSRQFGYAPTTLANALE---------------------------RHWPKGEQI-IANALETKPEVI 65 (74)
T ss_dssp SCCHHHHHHHHSSCHHHHHHTTT---------------------------SSCHHHHHH-HHHHTTSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc---------------------------CCCccHHHH-HHHHHCcCHHHH
Confidence 46789999999999776552211 244333332 999999998653
No 175
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=43.81 E-value=25 Score=25.02 Aligned_cols=32 Identities=9% Similarity=0.194 Sum_probs=25.7
Q ss_pred HHHHHHHhhcccccccHhHHHHHhccchhHHHHh
Q psy3486 18 RTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIK 51 (222)
Q Consensus 18 r~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~k 51 (222)
|++.++.++. .-.....||+.+|+|...|...
T Consensus 33 rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~ 64 (90)
T 3ulq_B 33 RECLILQEVE--KGFTNQEIADALHLSKRSIEYS 64 (90)
T ss_dssp HHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHH
Confidence 5666777765 7788999999999999998743
No 176
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=43.38 E-value=24 Score=24.97 Aligned_cols=44 Identities=11% Similarity=0.103 Sum_probs=34.6
Q ss_pred hhhhhhcccc------ccccHhHHHHHhCCChHHHHHHHHHHhhccceee
Q psy3486 74 DVLIKLIKPY------TRIHIPFISRQLNIETSDVESLLVSLILDNTVRG 117 (222)
Q Consensus 74 ~~l~~iiepy------s~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~ 117 (222)
+.|+..|+-+ -.+.+..||+.+|++...|..-|..+.=++.|.-
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 3455555555 5688999999999999999999999887777754
No 177
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=43.32 E-value=77 Score=22.99 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=38.2
Q ss_pred hhhhhhccccccc-cHhHHHHHhCCChHHHHHHHHHHhhccceeeEe
Q psy3486 74 DVLIKLIKPYTRI-HIPFISRQLNIETSDVESLLVSLILDNTVRGRI 119 (222)
Q Consensus 74 ~~l~~iiepys~v-~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~i 119 (222)
+.|+..++|=.++ ....+|+.+|++...|-.-+..+.-++.|...-
T Consensus 31 ~~I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 31 EHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3444667888888 999999999999999999899988888887544
No 178
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=43.23 E-value=62 Score=20.60 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHH
Q psy3486 6 IREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVL 49 (222)
Q Consensus 6 I~~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve 49 (222)
....+..-++.+|.. ..+....+|+.+|+|.+.|-
T Consensus 10 ~~~~~~~~l~~~r~~---------~g~s~~~lA~~~gis~~~i~ 44 (74)
T 1y7y_A 10 DLVKFGQRLRELRTA---------KGLSQETLAFLSGLDRSYVG 44 (74)
T ss_dssp HHHHHHHHHHHHHHH---------TTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHH---------cCCCHHHHHHHHCcCHHHHH
Confidence 334555555555554 35678889999999876644
No 179
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=43.16 E-value=30 Score=26.58 Aligned_cols=46 Identities=15% Similarity=0.111 Sum_probs=38.5
Q ss_pred hhhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeEe
Q psy3486 74 DVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRI 119 (222)
Q Consensus 74 ~~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~i 119 (222)
..|++.+..-.++....||+.+|++...|-..+..+.=.+.|...-
T Consensus 13 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 58 (162)
T 2p5v_A 13 IKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYA 58 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeec
Confidence 4566677767788999999999999999999999988888887543
No 180
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=43.12 E-value=93 Score=22.59 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=21.0
Q ss_pred cchhhhhhhhchhhHhHHHHHHHHHHHh
Q psy3486 190 TNTKLGKLYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 190 tnlKlakL~ld~~ey~~l~~~l~~L~~~ 217 (222)
....+|.++...|+|++.....++..+.
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~ 136 (184)
T 3vtx_A 109 AYYKLGLVYDSMGEHDKAIEAYEKTISI 136 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHh
Confidence 3456889999999999888777766543
No 181
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=42.91 E-value=33 Score=26.03 Aligned_cols=43 Identities=9% Similarity=0.050 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cHhHHHHHhccchhHHHHhhh
Q psy3486 11 EDLLRNIRTQVLIKLIKPYTRI-HIPFISRQLNIETSDVLIKLI 53 (222)
Q Consensus 11 ~~L~~~lr~q~Ll~li~PYsri-~i~~ia~~l~l~~~~ve~kls 53 (222)
+.+++.|+...+-.-+.|=+++ ....+|+.+|+|...|..-+.
T Consensus 7 ~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~ 50 (129)
T 2ek5_A 7 KQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLT 50 (129)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHH
Confidence 5688899999888889999999 899999999999887765443
No 182
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=42.23 E-value=22 Score=27.02 Aligned_cols=37 Identities=8% Similarity=0.199 Sum_probs=29.2
Q ss_pred HHHHHhhcccccccHhHHHHHhccchhHHHHhhhhhh
Q psy3486 20 QVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPY 56 (222)
Q Consensus 20 q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~i 56 (222)
..++..+..-.++....||+.+|+|.+.|-..+..+-
T Consensus 11 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~ 47 (152)
T 2cg4_A 11 RGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMK 47 (152)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3566777777899999999999999998776555543
No 183
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=41.69 E-value=57 Score=26.97 Aligned_cols=22 Identities=5% Similarity=-0.099 Sum_probs=15.4
Q ss_pred eeEeeccchHHHHHHHHHHHhh
Q psy3486 116 RGRIDQSNYKEMMSRYKQLLLY 137 (222)
Q Consensus 116 k~~idqg~y~~~l~~y~~LLty 137 (222)
.+...+|++++|.+.|++++..
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhh
Confidence 3445677888888888877763
No 184
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=41.38 E-value=1.1e+02 Score=23.69 Aligned_cols=94 Identities=9% Similarity=0.115 Sum_probs=42.9
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCc---ee-------
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDR---LW------- 187 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeR---LW------- 187 (222)
.+.+|+|++|++.|++++.-- | +..+.+++...+-..+-...+.+---..|+..++. ..++.. -|
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~-p--~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRY-P--FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-T--TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-C--CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHHH
Confidence 456799999999999998732 2 11233444444433332223332223333333321 111111 12
Q ss_pred -------eecchhhhhhhhchhhHhHHHHHHHHHHH
Q psy3486 188 -------FKTNTKLGKLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 188 -------fKtnlKlakL~ld~~ey~~l~~~l~~L~~ 216 (222)
++.-..++..+.+.|++++....++++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 124 (225)
T 2yhc_A 89 MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR 124 (225)
T ss_dssp HHHHC--------------CCHHHHHHHHHHHHHHT
T ss_pred HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH
Confidence 12222345555677888888877776654
No 185
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=40.93 E-value=97 Score=25.22 Aligned_cols=88 Identities=10% Similarity=-0.005 Sum_probs=53.4
Q ss_pred eccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhhhh
Q psy3486 120 DQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYF 199 (222)
Q Consensus 120 dqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL~l 199 (222)
++|++++|.+.|++.+..- |. ..+--+....-......+.+--.+.|+..++.. ..+..+| ..+|.++.
T Consensus 146 ~~~~~~~A~~~~~~a~~~~-p~----~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~----~~~~~~~~ 214 (308)
T 2ond_A 146 RAEGIKSGRMIFKKAREDA-RT----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYV----LAYIDYLS 214 (308)
T ss_dssp HHHCHHHHHHHHHHHHTST-TC----CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHH----HHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-CC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHH----HHHHHHHH
Confidence 4577777777777777632 21 111111111111111245555567777777643 3456777 67899999
Q ss_pred chhhHhHHHHHHHHHHHhh
Q psy3486 200 DREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 200 d~~ey~~l~~~l~~L~~~c 218 (222)
..|+++++..+.+...+.|
T Consensus 215 ~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 215 HLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp TTCCHHHHHHHHHHHHHSS
T ss_pred HCCCHHHHHHHHHHHHhcc
Confidence 9999999998888877764
No 186
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=40.80 E-value=25 Score=26.12 Aligned_cols=36 Identities=14% Similarity=0.311 Sum_probs=27.4
Q ss_pred HHHHHhhcccccccHhHHHHHhccchhHHHHhhhhh
Q psy3486 20 QVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKP 55 (222)
Q Consensus 20 q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~ 55 (222)
..++..+.+-.++....||+.+|+|.+.|-..+..+
T Consensus 7 ~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L 42 (141)
T 1i1g_A 7 KIILEILEKDARTPFTEIAKKLGISETAVRKRVKAL 42 (141)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345666767778999999999999988876554444
No 187
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=40.51 E-value=31 Score=28.55 Aligned_cols=45 Identities=9% Similarity=0.055 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHHHhhhh
Q psy3486 10 IEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIK 54 (222)
Q Consensus 10 i~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd 54 (222)
.+.+|+.|+...+-..+.|=+++....+|+.||+|...|-.-|..
T Consensus 28 ~~~v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~ 72 (237)
T 3c7j_A 28 RTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQ 72 (237)
T ss_dssp HHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHH
Confidence 445899999999999999999999999999999998887755543
No 188
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=40.45 E-value=38 Score=25.28 Aligned_cols=44 Identities=9% Similarity=0.119 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cHhHHHHHhccchhHHHHhhhh
Q psy3486 11 EDLLRNIRTQVLIKLIKPYTRI-HIPFISRQLNIETSDVLIKLIK 54 (222)
Q Consensus 11 ~~L~~~lr~q~Ll~li~PYsri-~i~~ia~~l~l~~~~ve~klsd 54 (222)
..+++.|+...+-.-+.|=+++ ....+|+.+|+|...|..-+..
T Consensus 16 ~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~ 60 (125)
T 3neu_A 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQE 60 (125)
T ss_dssp HHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5688899999888899999999 5999999999998887755443
No 189
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=40.24 E-value=35 Score=26.89 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=39.3
Q ss_pred hhhhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeE
Q psy3486 73 SDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGR 118 (222)
Q Consensus 73 ~~~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~ 118 (222)
+..|++.+..-.++....||+.+|++...|-..+..+.-++.|...
T Consensus 19 d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 19 DRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 3567777777788999999999999999999999998888888753
No 190
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=40.21 E-value=42 Score=25.24 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cHhHHHHHhccchhHHHHhhhhh
Q psy3486 11 EDLLRNIRTQVLIKLIKPYTRI-HIPFISRQLNIETSDVLIKLIKP 55 (222)
Q Consensus 11 ~~L~~~lr~q~Ll~li~PYsri-~i~~ia~~l~l~~~~ve~klsd~ 55 (222)
..+++.|+...+-.-+.|=+++ ....+|+.||+|...|-.-+...
T Consensus 17 ~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L 62 (134)
T 4ham_A 17 EQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQEL 62 (134)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 4578889999999999999999 89999999999999887655443
No 191
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=40.20 E-value=24 Score=27.12 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=28.4
Q ss_pred HHHHHhhcccccccHhHHHHHhccchhHHHHhhhhh
Q psy3486 20 QVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKP 55 (222)
Q Consensus 20 q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~ 55 (222)
..++.++..-.++....||+.+|+|.+.|-..+..+
T Consensus 13 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 48 (162)
T 2p5v_A 13 IKILQVLQENGRLTNVELSERVALSPSPCLRRLKQL 48 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 456677777788999999999999998877555444
No 192
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=39.89 E-value=42 Score=27.80 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=26.1
Q ss_pred HHHHHHHhhcccccccHhHHHHHhccchhHHHHh
Q psy3486 18 RTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIK 51 (222)
Q Consensus 18 r~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~k 51 (222)
+++.++.+. |.-.....||+.+|+|...|...
T Consensus 201 ~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~ 232 (258)
T 3clo_A 201 REKEILRCI--RKGLSSKEIAATLYISVNTVNRH 232 (258)
T ss_dssp HHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHH
Confidence 556666665 78899999999999999998743
No 193
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=38.22 E-value=1.1e+02 Score=25.24 Aligned_cols=26 Identities=4% Similarity=0.027 Sum_probs=15.5
Q ss_pred hhhhhhhhchhhHhHHHHHHHHHHHh
Q psy3486 192 TKLGKLYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 192 lKlakL~ld~~ey~~l~~~l~~L~~~ 217 (222)
..+|.++...|+++.....+++..+.
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45666666666666666665555443
No 194
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=37.84 E-value=94 Score=27.85 Aligned_cols=25 Identities=12% Similarity=0.022 Sum_probs=13.3
Q ss_pred hhhhhhhhch---hhHhHHHHHHHHHHH
Q psy3486 192 TKLGKLYFDR---EDFNKLSRILKQLHQ 216 (222)
Q Consensus 192 lKlakL~ld~---~ey~~l~~~l~~L~~ 216 (222)
..+|.++... +++++....+++..+
T Consensus 129 ~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 129 AQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 4466666666 555555554444433
No 195
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=37.82 E-value=43 Score=24.20 Aligned_cols=42 Identities=29% Similarity=0.251 Sum_probs=33.2
Q ss_pred hhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceee
Q psy3486 75 VLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRG 117 (222)
Q Consensus 75 ~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~ 117 (222)
.|+.++..-. .....||+.+|++...|-+.|..+--++.|.-
T Consensus 21 ~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 21 EAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3445555544 88999999999999999999988877777754
No 196
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=37.24 E-value=93 Score=30.16 Aligned_cols=87 Identities=8% Similarity=0.182 Sum_probs=41.4
Q ss_pred EeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhh
Q psy3486 118 RIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKL 197 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL 197 (222)
..++|++++|+++|++.+.. .|. + ..+.+++=..+....+.+--.+.|+..++. ..++- .+...+|.+
T Consensus 53 l~~~g~~~eA~~~~~~Al~l-~P~----~-~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~----~a~~~Lg~~ 120 (723)
T 4gyw_A 53 LQQQGKLQEALMHYKEAIRI-SPT----F-ADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFA----DAHSNLASI 120 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTT----C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH----HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCC----C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH----HHHHHHHHH
Confidence 34455666666666666552 221 1 122333222222223333333444444332 22222 234567777
Q ss_pred hhchhhHhHHHHHHHHHHH
Q psy3486 198 YFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 198 ~ld~~ey~~l~~~l~~L~~ 216 (222)
|.+.|+|++.....++..+
T Consensus 121 ~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 121 HKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777766655443
No 197
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.22 E-value=28 Score=30.11 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhccch
Q psy3486 8 EHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIET 45 (222)
Q Consensus 8 ~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~ 45 (222)
--++-+.+++|..++--+-+.|.++.++++++.|+.+-
T Consensus 176 ~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s 213 (274)
T 4b4t_T 176 SFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNN 213 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCC
Confidence 35678889999999999999999999999999999963
No 198
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=36.85 E-value=40 Score=22.89 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=29.3
Q ss_pred ccccHhHHHHHhCCChHHHHHHHHHHhhccceee
Q psy3486 84 TRIHIPFISRQLNIETSDVESLLVSLILDNTVRG 117 (222)
Q Consensus 84 s~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~ 117 (222)
..+.+..||+.+|++...|-..+..+.-++.|..
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4578899999999999999998888888888763
No 199
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=36.85 E-value=95 Score=30.07 Aligned_cols=92 Identities=13% Similarity=0.133 Sum_probs=58.8
Q ss_pred ceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchh
Q psy3486 114 TVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTK 193 (222)
Q Consensus 114 ~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlK 193 (222)
.-.....+|++++|+++|++.+. +.|. + ..+.+++=..+....+.+--.+.|+..++. ...+- ..-..
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~-l~P~----~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~----~a~~~ 150 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQ-INPA----F-ADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFP----DAYCN 150 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-HCTT----C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCH----HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-hCCC----C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh----HHHhh
Confidence 33455678899999999999998 3342 2 334454444343444544445566655552 22333 34457
Q ss_pred hhhhhhchhhHhHHHHHHHHHHHh
Q psy3486 194 LGKLYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 194 lakL~ld~~ey~~l~~~l~~L~~~ 217 (222)
||.++...++|+...+..+++.+.
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHHHh
Confidence 899999999999988777776654
No 200
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=36.75 E-value=30 Score=25.66 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=36.8
Q ss_pred hhhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeE
Q psy3486 74 DVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGR 118 (222)
Q Consensus 74 ~~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~ 118 (222)
..|++.+.+-.++..+.+|+.+|++...|-..+..+.-++.|...
T Consensus 7 ~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 445666666678899999999999999999888888888877643
No 201
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=36.69 E-value=52 Score=21.42 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=22.3
Q ss_pred ccccccHhHHHHHhccchhHHHHhhhhh
Q psy3486 28 PYTRIHIPFISRQLNIETSDVLIKLIKP 55 (222)
Q Consensus 28 PYsri~i~~ia~~l~l~~~~ve~klsd~ 55 (222)
.+...+...||+.+|+|...|...+...
T Consensus 22 ~~~g~s~~eIA~~lgis~~tV~~~~~ra 49 (68)
T 2p7v_B 22 MNTDYTLEEVGKQFDVTRERIRQIEAKA 49 (68)
T ss_dssp SSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3567788999999999999988655443
No 202
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=36.66 E-value=27 Score=25.60 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=27.8
Q ss_pred HHHHHHHhhcccccccHhHHHHHhccchhHHHHhhhh
Q psy3486 18 RTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIK 54 (222)
Q Consensus 18 r~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd 54 (222)
|.+.++.++.+-. +.+..+|+.+|+|...|-.-|..
T Consensus 8 R~~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 8 RTIKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHcC
Confidence 5566667776655 89999999999999988765543
No 203
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=36.51 E-value=30 Score=27.39 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=29.3
Q ss_pred HHHHHHhhcccccccHhHHHHHhccchhHHHHhhhhh
Q psy3486 19 TQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKP 55 (222)
Q Consensus 19 ~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~ 55 (222)
...|++.+..-.++....||+.+|+|.+.|-..+..+
T Consensus 29 d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L 65 (171)
T 2e1c_A 29 DKKIIKILQNDGKAPLREISKITGLAESTIHERIRKL 65 (171)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3467777777789999999999999998877555444
No 204
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=36.45 E-value=89 Score=22.21 Aligned_cols=65 Identities=9% Similarity=-0.020 Sum_probs=37.8
Q ss_pred ccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCCh
Q psy3486 30 TRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIET 99 (222)
Q Consensus 30 sri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~ 99 (222)
..+.++.+|+.+|+|...+...+.+.+=. -+...++.+ +++. ..+.+. .+...|..||..+|.+.
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~~G~-s~~~~~~~~--Rl~~-A~~lL~-~~~~~i~eIA~~~Gf~~ 86 (113)
T 3oio_A 22 EPLSTDDIAYYVGVSRRQLERLFKQYLGT-VPSKYYLEL--RLNR-ARQLLQ-QTSKSIVQIGLACGFSS 86 (113)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHTSS-CHHHHHHHH--HHHH-HHHHHH-HCCCCHHHHHHHTTCSC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHCc-CHHHHHHHH--HHHH-HHHHHH-cCCCCHHHHHHHHCCCC
Confidence 45899999999999988877655543211 122222221 1211 112222 24667888888888764
No 205
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=36.33 E-value=75 Score=22.42 Aligned_cols=65 Identities=8% Similarity=0.036 Sum_probs=37.8
Q ss_pred ccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCCh
Q psy3486 30 TRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIET 99 (222)
Q Consensus 30 sri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~ 99 (222)
..+.++.+|+.+|+|...+...+.+.+ ..-....+..+ .++. -.+.+. .+...|..||..+|.+.
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~fk~~~-G~s~~~~~~~~--Rl~~-A~~lL~-~~~~si~~IA~~~Gf~~ 84 (108)
T 3oou_A 20 EGMSLKTLGNDFHINAVYLGQLFQKEM-GEHFTDYLNRY--RVNY-AKEELL-QTKDNLTIIAGKSGYTD 84 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH-SSCHHHHHHHH--HHHH-HHHHHH-HCCCCHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH-CcCHHHHHHHH--HHHH-HHHHHH-cCCCCHHHHHHHcCCCC
Confidence 468999999999999888776654432 11222222211 2211 112222 24567888888888754
No 206
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=36.27 E-value=31 Score=26.16 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=27.2
Q ss_pred HHHHHhhcccccccHhHHHHHhccchhHHHHhhhhh
Q psy3486 20 QVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKP 55 (222)
Q Consensus 20 q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~ 55 (222)
..++..+..-.++....||+.+|+|.+.|-..+..+
T Consensus 10 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 45 (151)
T 2cyy_A 10 KKIIKILQNDGKAPLREISKITGLAESTIHERIRKL 45 (151)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345666666679999999999999988876544443
No 207
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=36.03 E-value=17 Score=31.97 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHHHHHHHH---HHHhhcccccccHhHHHHHhccchhHHHHhhhhhh
Q psy3486 3 DPFIREHIEDLLRNIRTQV---LIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPY 56 (222)
Q Consensus 3 D~~I~~hi~~L~~~lr~q~---Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~i 56 (222)
..-|++|..-+-+++|..| +++++. ...+.-..||+.+|+|.+.|-+-+.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~ 58 (380)
T 2hoe_A 3 SDKIHHHHHHMPKSVRAENISRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFL 58 (380)
T ss_dssp -------------------CCCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccccccccccCchhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3456777777778888874 688888 8899999999999999998875554443
No 208
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=35.90 E-value=40 Score=25.06 Aligned_cols=63 Identities=6% Similarity=0.120 Sum_probs=34.5
Q ss_pred HhHHHHHhCCChHHHHHHHHHHhhccceeeEeec----cchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhh
Q psy3486 88 IPFISRQLNIETSDVESLLVSLILDNTVRGRIDQ----SNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYIS 159 (222)
Q Consensus 88 i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~idq----g~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs 159 (222)
...||+.+|++...|...+.. +.++ ++..+.. ..|+...+.++++.. ..+ +-.+|++.++.++
T Consensus 41 ~~EIA~~lgiS~~tV~~~l~r-a~~k-Lr~~l~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~ 107 (113)
T 1s7o_A 41 LAEIADEFGVSRQAVYDNIKR-TEKI-LETYEMKLHMYSDYVVRSEIFDDMIA----HYP---HDEYLQEKISILT 107 (113)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH-HHHH-HHHHHHHHCHHHHHHHHHHHHHHHHH----HCT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH-HHHH-HHHHHHHhhHHHHHHHHHHHHHHHHH----Hhc---ccHHHHHHHHHHH
Confidence 567999999999999865443 3332 2323322 223333333344322 112 2467777777665
No 209
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=35.10 E-value=40 Score=24.37 Aligned_cols=28 Identities=32% Similarity=0.291 Sum_probs=21.0
Q ss_pred HhhcccccccHhHHHHHhccchhHHHHhh
Q psy3486 24 KLIKPYTRIHIPFISRQLNIETSDVLIKL 52 (222)
Q Consensus 24 ~li~PYsri~i~~ia~~l~l~~~~ve~kl 52 (222)
.++..-. .....||+.||+|...|-..|
T Consensus 24 ~lL~~~g-~sa~eLAk~LgiSk~aVr~~L 51 (82)
T 1oyi_A 24 KTIGIEG-ATAAQLTRQLNMEKREVNKAL 51 (82)
T ss_dssp HHHSSST-EEHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 4555544 999999999999988766433
No 210
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=35.07 E-value=45 Score=23.13 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHHHhhhh
Q psy3486 10 IEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIK 54 (222)
Q Consensus 10 i~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd 54 (222)
++.|-..-|+-..+.++ .-.....||+.+|+|...|...+..
T Consensus 35 l~~L~~~~r~vl~l~~~---~g~s~~eIA~~lgis~~tV~~~l~r 76 (92)
T 3hug_A 35 LAQLSAEHRAVIQRSYY---RGWSTAQIATDLGIAEGTVKSRLHY 76 (92)
T ss_dssp HHTSCHHHHHHHHHHHT---SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33333333333344444 4457899999999999998865544
No 211
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=34.98 E-value=42 Score=25.94 Aligned_cols=37 Identities=5% Similarity=0.290 Sum_probs=29.6
Q ss_pred HHHHHHhhcccccccHhHHHHHhccchhHHHHhhhhh
Q psy3486 19 TQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKP 55 (222)
Q Consensus 19 ~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~ 55 (222)
.+.|+++++-=.++....||+.+|+|.+.|-..+..+
T Consensus 5 d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L 41 (162)
T 3i4p_A 5 DRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKM 41 (162)
T ss_dssp HHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3567788888889999999999999998877554443
No 212
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=34.95 E-value=62 Score=26.36 Aligned_cols=107 Identities=19% Similarity=0.259 Sum_probs=56.9
Q ss_pred hhhhHhhhhhhhhhhhhhhhhhhhhhhcccccc----------------ccHhHHHHHhCCChHHHHH------HHHHHh
Q psy3486 53 IKPYTRIHIPFISRQLNIETSDVLIKLIKPYTR----------------IHIPFISRQLNIETSDVES------LLVSLI 110 (222)
Q Consensus 53 sd~il~~hl~~l~d~~~~~~~~~l~~iiepys~----------------v~i~~ia~~l~l~~~~VE~------~L~~~i 110 (222)
..+|+|.--..++| ||.|+++-|+. |.|.-+.+.=.++.++... ++-..+
T Consensus 4 a~~fIDdtsselLD--------~lyrl~K~~t~nkkeA~kv~KniIKi~vKigvl~rn~qf~~eEl~~~~~fr~k~~~~a 75 (161)
T 3f4m_A 4 AHLFIDETSSEVLD--------ELYRVSKEYTHSRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGA 75 (161)
T ss_dssp ----CCHHHHHHHH--------HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHhcCccHHHHHH--------HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhheeeecCCCCHHHHHHHHHHHHHHHHHH
Confidence 34666666666665 45566666663 5666666665666665551 111111
Q ss_pred hc----cceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHH---HHHhhcCCchHHHHHHHHH
Q psy3486 111 LD----NTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSI---LDYISTSKNMELLQDFYET 173 (222)
Q Consensus 111 Ld----q~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~i---Ld~vs~s~~~~~l~~fYe~ 173 (222)
+- ..+.=.+|+.-..++|.--+++|. +.|++--++||+.+| -+++| +.+|+..+|..
T Consensus 76 mt~iSF~eVdfTfD~~~L~~~L~ec~~lL~---~lv~~HLT~KS~~Ri~~vF~~f~---~~efL~~lf~~ 139 (161)
T 3f4m_A 76 MTALSFGEVDFTFEAAVLAGLLTECRDVLL---ELVEHHLTPKSHGRIRHVFDHFS---DPGLLTALYGP 139 (161)
T ss_dssp HHHHHHTSTTSCCCHHHHHHHHHHHHHHHH---HHHTTTSCHHHHHHHHHHHHHHT---CHHHHHHHTSG
T ss_pred HHHhhhhccCccccHHHHHHHHHHHHHHHH---HHHHhhCCcchHHHHHHHHHHhC---CHHHHHHHhCc
Confidence 11 112223344334455543344433 567777788887655 44554 77888888765
No 213
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=34.75 E-value=98 Score=20.42 Aligned_cols=50 Identities=8% Similarity=0.170 Sum_probs=31.5
Q ss_pred ccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCChHHHHH
Q psy3486 30 TRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVES 104 (222)
Q Consensus 30 sri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~~~VE~ 104 (222)
..++-..+|+.+|++.+.|-.-.. | -.+-+.-.+..||+.+|++++++-.
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~---------g----------------~~~~~~~~~~~ia~~l~v~~~~l~~ 73 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFN---------G----------------INALNAYNAALLAKILKVSVEEFSP 73 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHT---------T----------------SSCCCHHHHHHHHHHHTSCGGGTCH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc---------C----------------CCCCCHHHHHHHHHHhCCCHHHHhH
Confidence 356788899999998776442111 0 1122334566789999998876543
No 214
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=34.69 E-value=52 Score=25.53 Aligned_cols=96 Identities=10% Similarity=0.105 Sum_probs=50.2
Q ss_pred eeEeeccchHHHHHHHHHHHhhhhhccCccccHHH---HHHHHHHh-----------hcCCchHHHHHHHHHHHHHHhcC
Q psy3486 116 RGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKS---INSILDYI-----------STSKNMELLQDFYETTLEALKDA 181 (222)
Q Consensus 116 k~~idqg~y~~~l~~y~~LLtyiksaVtrNysEks---In~iLd~v-----------s~s~~~~~l~~fYe~TL~~l~~~ 181 (222)
....++|++++|++.|++++.-- |.-. +...+ +..+.... -...+.+--...|+..++. .
T Consensus 104 ~~~~~~~~~~~A~~~~~~~l~~~-P~~~--~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~ 177 (225)
T 2yhc_A 104 RSDRDPQQARAAFSDFSKLVRGY-PNSQ--YTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD---Y 177 (225)
T ss_dssp ----CCHHHHHHHHHHHHHHTTC-TTCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---S
T ss_pred hhhcCcHHHHHHHHHHHHHHHHC-cCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH---C
Confidence 34457899999999999999843 3211 22222 11111111 0111222223333333332 2
Q ss_pred CCCceeeecchhhhhhhhchhhHhHHHHHHHHHHHh
Q psy3486 182 KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 217 (222)
Q Consensus 182 ~NeRLWfKtnlKlakL~ld~~ey~~l~~~l~~L~~~ 217 (222)
.+...--..-..+|..|...|+++...+.++.+...
T Consensus 178 p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 178 PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 221111134567899999999999999888876543
No 215
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=34.66 E-value=26 Score=24.41 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=30.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcccc-cccHhHHHHHhccchhH-HH
Q psy3486 1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYT-RIHIPFISRQLNIETSD-VL 49 (222)
Q Consensus 1 ~~D~~I~~hi~~L~~~lr~q~Ll~li~PYs-ri~i~~ia~~l~l~~~~-ve 49 (222)
|+|+.++...+.+.+.+. ++..+.-.. .+....||+.+|++.+. |-
T Consensus 2 m~~~~l~~~~g~~~~~l~---~L~~l~~~~~~~t~~eLa~~l~is~~t~vs 49 (95)
T 2pg4_A 2 MDDETLRLQFGHLIRILP---TLLEFEKKGYEPSLAEIVKASGVSEKTFFM 49 (95)
T ss_dssp CCCGGGGSBHHHHHHHHH---HHHHHHHTTCCCCHHHHHHHHCCCHHHHHT
T ss_pred CcHHHHHHHhhhHHHHHH---HHHHHHhcCCCCCHHHHHHHHCCCchHHHH
Confidence 566666665565555443 333343333 58999999999998776 54
No 216
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=34.55 E-value=38 Score=24.62 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=24.8
Q ss_pred HHHHHHHhhcccccccHhHHHHHhccchhHHHHhh
Q psy3486 18 RTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKL 52 (222)
Q Consensus 18 r~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~kl 52 (222)
+++.++.++ +.-.....||+.+|+|...|...+
T Consensus 38 re~~Vl~l~--~~G~s~~EIA~~L~iS~~TV~~~l 70 (99)
T 1p4w_A 38 KESEVLRLF--AEGFLVTEIAKKLNRSIKTISSQK 70 (99)
T ss_dssp HHHHHHHHH--HHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 455566665 467788999999999999987433
No 217
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=34.46 E-value=46 Score=26.69 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHHHhh
Q psy3486 10 IEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKL 52 (222)
Q Consensus 10 i~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~kl 52 (222)
-+.+|+.|++..+-.-+.|=+++.-..+|+.||+|..-|-.-|
T Consensus 14 ~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL 56 (218)
T 3sxy_A 14 RTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDAL 56 (218)
T ss_dssp CHHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHH
Confidence 3578999999999999999999999999999999988766443
No 218
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=34.39 E-value=35 Score=26.95 Aligned_cols=46 Identities=13% Similarity=0.183 Sum_probs=38.7
Q ss_pred hhhhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeE
Q psy3486 73 SDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGR 118 (222)
Q Consensus 73 ~~~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~ 118 (222)
+..|++.+..-.++-...||+.+|++...|-..+..+--.+.|.+.
T Consensus 29 d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 29 DKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 4567777777789999999999999999999999888888887653
No 219
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=33.90 E-value=1.2e+02 Score=21.21 Aligned_cols=66 Identities=8% Similarity=0.068 Sum_probs=36.2
Q ss_pred ccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhcc-ccccccHhHHHHHhCCCh
Q psy3486 30 TRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIK-PYTRIHIPFISRQLNIET 99 (222)
Q Consensus 30 sri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iie-pys~v~i~~ia~~l~l~~ 99 (222)
..+.++.+|+.+|+|...+...+.+.+= .-....++.+ +++. -.+.+. +=....|..||..+|.+.
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~~~G-~s~~~~~~~~--Rl~~-A~~lL~~~~~~~si~~IA~~~Gf~~ 83 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQRSRG-YSPMAFAKRV--RLQH-AHNLLSDGATPTTVTAAALSCGFSN 83 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHTS-SCHHHHHHHH--HHHH-HHHHHHSSSSCCCHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHhC-cCHHHHHHHH--HHHH-HHHHHHcCCCCCCHHHHHHHhCCCC
Confidence 4589999999999998877655543321 1122222211 1211 112222 211267788888888764
No 220
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=33.65 E-value=1.4e+02 Score=21.80 Aligned_cols=65 Identities=9% Similarity=0.123 Sum_probs=37.4
Q ss_pred ccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCCh
Q psy3486 30 TRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIET 99 (222)
Q Consensus 30 sri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~ 99 (222)
..+.++.+|+.+|+|...+...+.+.+ ..-....+..+ +++. -.+.+. .+...|..||..+|...
T Consensus 26 ~~~sl~~lA~~~~~S~~~l~r~fk~~~-G~s~~~~l~~~--Rl~~-A~~lL~-~~~~si~~IA~~~Gf~~ 90 (129)
T 1bl0_A 26 SPLSLEKVSERSGYSKWHLQRMFKKET-GHSLGQYIRSR--KMTE-IAQKLK-ESNEPILYLAERYGFES 90 (129)
T ss_dssp SCCCCHHHHHHSSSCHHHHHHHHHHHH-SSCHHHHHHHH--HHHH-HHHHHH-HCCCCHHHHHHHTTCSC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH-CcCHHHHHHHH--HHHH-HHHHHH-cCCCCHHHHHHHHCCCC
Confidence 358999999999999888776555432 12223333221 2211 112221 23556777888887764
No 221
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=32.35 E-value=1.1e+02 Score=20.44 Aligned_cols=34 Identities=6% Similarity=0.205 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHH
Q psy3486 7 REHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVL 49 (222)
Q Consensus 7 ~~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve 49 (222)
...+..+++.+|.+. .+....+|+.+|++.+.|-
T Consensus 15 ~~~l~~~l~~~R~~~---------glsq~~lA~~~gis~~~is 48 (92)
T 1lmb_3 15 ARRLKAIYEKKKNEL---------GLSQESVADKMGMGQSGVG 48 (92)
T ss_dssp HHHHHHHHHHHHHHH---------TCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHc---------CCCHHHHHHHHCcCHHHHH
Confidence 345555555555543 5677889999999866543
No 222
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=32.34 E-value=59 Score=26.12 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHHHhh
Q psy3486 10 IEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKL 52 (222)
Q Consensus 10 i~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~kl 52 (222)
.+.+|+.|++..+-.-+.|=+++.-..+|+.||+|..-|-.-|
T Consensus 18 ~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl 60 (222)
T 3ihu_A 18 SDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREAL 60 (222)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHH
Confidence 4678999999999999999999999999999999988766443
No 223
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=32.13 E-value=42 Score=27.53 Aligned_cols=26 Identities=12% Similarity=-0.017 Sum_probs=21.2
Q ss_pred chhhhhhhhchhhHhHHHHHHHHHHH
Q psy3486 191 NTKLGKLYFDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 191 nlKlakL~ld~~ey~~l~~~l~~L~~ 216 (222)
-..+|.+++..|+|+.....++++.+
T Consensus 222 ~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 222 ATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 34689999999999999888777654
No 224
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=31.92 E-value=35 Score=28.82 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhc-cchhHHHHhh
Q psy3486 8 EHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLN-IETSDVLIKL 52 (222)
Q Consensus 8 ~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~-l~~~~ve~kl 52 (222)
.-+..+.+++|....--+=..|++|.++-+|+.|| .+.+++++..
T Consensus 129 ~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi 174 (226)
T 1rz4_A 129 EGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWM 174 (226)
T ss_dssp HTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHH
Confidence 34456889999999999999999999999999995 7777766443
No 225
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=31.74 E-value=41 Score=25.38 Aligned_cols=36 Identities=11% Similarity=0.234 Sum_probs=27.3
Q ss_pred HHHHHhhcccccccHhHHHHHhccchhHHHHhhhhh
Q psy3486 20 QVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKP 55 (222)
Q Consensus 20 q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~ 55 (222)
..++..+..-.++....||+.+|+|.+.|-..+..+
T Consensus 10 ~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 45 (150)
T 2w25_A 10 RILVRELAADGRATLSELATRAGLSVSAVQSRVRRL 45 (150)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345566666678999999999999988876554444
No 226
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=31.67 E-value=69 Score=26.16 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=40.9
Q ss_pred ccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCCh
Q psy3486 30 TRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIET 99 (222)
Q Consensus 30 sri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~ 99 (222)
..+.++.+|+.+|+|...+..... - ...-....+.+.....-..+++ .+...|..||..+|.+.
T Consensus 184 ~~~sl~~lA~~~~~S~~~l~r~fk-~-~G~t~~~~l~~~Rl~~A~~lL~----~~~~si~eIA~~~Gf~~ 247 (276)
T 3gbg_A 184 RNWRWADICGELRTNRMILKKELE-S-RGVKFRELINSIRISYSISLMK----TGEFKIKQIAYQSGFAS 247 (276)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH-T-TTCCHHHHHHHHHHHHHHHHHH----HTCCCHHHHHHHTTCSC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH-H-cCCCHHHHHHHHHHHHHHHHHh----CCCCCHHHHHHHhCCCC
Confidence 458999999999999887665553 2 4444444554332222233332 35677888999888864
No 227
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=31.64 E-value=67 Score=24.15 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=38.1
Q ss_pred hhhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeEee
Q psy3486 74 DVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRID 120 (222)
Q Consensus 74 ~~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~id 120 (222)
..|++.+..-.++....+|+.+|++...|-..+..+.-.+.|...-.
T Consensus 10 ~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~ 56 (150)
T 2w25_A 10 RILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSA 56 (150)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34556666667889999999999999999999999888888865543
No 228
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=31.55 E-value=83 Score=23.54 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhh--hcccccccc
Q psy3486 10 IEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIK--LIKPYTRIH 87 (222)
Q Consensus 10 i~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~--iiepys~v~ 87 (222)
+.+-++.+|++. .++.+.+|+.+|+|.+.+.+ +|++-.. .-.+|.+=-
T Consensus 4 ~G~~lr~~R~~~---------gltq~elA~~~gis~~~is~---------------------iE~g~~~~~~~~~~~~~~ 53 (130)
T 3fym_A 4 VGEALKGRRERL---------GMTLTELEQRTGIKREMLVH---------------------IENNEFDQLPNKNYSEGF 53 (130)
T ss_dssp HHHHHHHHHHHT---------TCCHHHHHHHHCCCHHHHHH---------------------HHTTCGGGSSSGGGHHHH
T ss_pred HHHHHHHHHHHc---------CCCHHHHHHHHCcCHHHHHH---------------------HHCCCCCCCchhhhHHHH
Confidence 344455555553 67788899999998765441 1211111 011233344
Q ss_pred HhHHHHHhCCChHHHH
Q psy3486 88 IPFISRQLNIETSDVE 103 (222)
Q Consensus 88 i~~ia~~l~l~~~~VE 103 (222)
+..+|+.+|++.++.-
T Consensus 54 l~~ia~~L~v~~~~l~ 69 (130)
T 3fym_A 54 IRKYASVVNIEPNQLI 69 (130)
T ss_dssp HHHHHHHTTCCHHHHH
T ss_pred HHHHHHHhCCCHHHHH
Confidence 6779999999987654
No 229
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=31.29 E-value=54 Score=24.54 Aligned_cols=33 Identities=12% Similarity=0.327 Sum_probs=25.9
Q ss_pred HHHHHhhcccccccHhHHHHHhccchhHHHHhh
Q psy3486 20 QVLIKLIKPYTRIHIPFISRQLNIETSDVLIKL 52 (222)
Q Consensus 20 q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~kl 52 (222)
..++..+..-.++....||+.+|+|.+.|-..+
T Consensus 6 ~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l 38 (150)
T 2pn6_A 6 LRILKILQYNAKYSLDEIAREIRIPKATLSYRI 38 (150)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 346667777778999999999999988865433
No 230
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=31.03 E-value=43 Score=25.35 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=36.1
Q ss_pred hhhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceee
Q psy3486 74 DVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRG 117 (222)
Q Consensus 74 ~~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~ 117 (222)
..|++.+..-.++-...+|+.+|++...|-..+..+--.+.|..
T Consensus 10 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 10 KKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 44566666667899999999999999999988888877777765
No 231
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=30.96 E-value=59 Score=24.33 Aligned_cols=44 Identities=16% Similarity=0.313 Sum_probs=37.3
Q ss_pred hhhhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceee
Q psy3486 74 DVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRG 117 (222)
Q Consensus 74 ~~l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~ 117 (222)
..|++.+..-.++....||+.+|++...|-..+..+.-.+.|..
T Consensus 6 ~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 6 LRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 45666777667899999999999999999999999888888876
No 232
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=30.54 E-value=1.3e+02 Score=26.64 Aligned_cols=17 Identities=12% Similarity=-0.048 Sum_probs=10.0
Q ss_pred eccchHHHHHHHHHHHh
Q psy3486 120 DQSNYKEMMSRYKQLLL 136 (222)
Q Consensus 120 dqg~y~~~l~~y~~LLt 136 (222)
++|++++|.+.|++-+.
T Consensus 368 ~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 368 RAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HhcCHHHHHHHHHHHHh
Confidence 35566666666666554
No 233
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=30.32 E-value=1.4e+02 Score=20.94 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=38.8
Q ss_pred ccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCCh
Q psy3486 30 TRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIET 99 (222)
Q Consensus 30 sri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~ 99 (222)
..+.++.+|+.+|+|...+...+.+-+ ..-....+..+ +++ .-.+.+. .+...|..||..+|.+.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~~-G~s~~~~~~~~--Rl~-~A~~lL~-~~~~si~~IA~~~Gf~~ 83 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQL-GISVLSWREDQ--RIS-QAKLLLS-TTRMPIATVGRNVGFDD 83 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHH-SSCHHHHHHHH--HHH-HHHHHHH-HCCCCHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH-CcCHHHHHHHH--HHH-HHHHHHH-cCCCCHHHHHHHhCCCC
Confidence 478999999999999888775554432 12222333221 221 1222222 24677888888888764
No 234
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=30.27 E-value=65 Score=26.46 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHHHhh
Q psy3486 10 IEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKL 52 (222)
Q Consensus 10 i~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~kl 52 (222)
-+.+|+.|++..+-.-++|=+++.-..+|+.||+|..-|-.-|
T Consensus 30 ~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL 72 (239)
T 2hs5_A 30 TTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAF 72 (239)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHH
Confidence 4678999999999999999999999999999999988776444
No 235
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=29.95 E-value=41 Score=26.47 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=30.0
Q ss_pred HHHHHhhcccccccHhHHHHHhccchhHHHHhhhhhhHh
Q psy3486 20 QVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTR 58 (222)
Q Consensus 20 q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~il~ 58 (222)
..|+..+..-.++....||+.+|+|.+.|-..+..+-=.
T Consensus 20 ~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 20 RNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 356677777789999999999999999887665555333
No 236
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=29.28 E-value=60 Score=20.55 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcccccccHhHHHHHh-----ccchhHHHHhhh
Q psy3486 17 IRTQVLIKLIKPYTRIHIPFISRQL-----NIETSDVLIKLI 53 (222)
Q Consensus 17 lr~q~Ll~li~PYsri~i~~ia~~l-----~l~~~~ve~kls 53 (222)
-|...|..++..-..+..+.|++.| ++|...|-.-|.
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 4666677777766789999999999 999887765444
No 237
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=29.20 E-value=88 Score=22.70 Aligned_cols=90 Identities=10% Similarity=0.122 Sum_probs=50.5
Q ss_pred eeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhh
Q psy3486 116 RGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLG 195 (222)
Q Consensus 116 k~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKla 195 (222)
...+++|+|++|++.|++.+..- |. ...+...+-..+....+.+--.+.|+..++. ...+... ...+|
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~-p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~----~~~la 85 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRAN-PQ-----NSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAEL----YAALA 85 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHC-CS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHH----HHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHHhC-CC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHH----HHHHH
Confidence 34567899999999999988833 31 1233333333333334554455555555543 2233333 35688
Q ss_pred hh-hhchhhH--hHHHHHHHHHHHh
Q psy3486 196 KL-YFDREDF--NKLSRILKQLHQS 217 (222)
Q Consensus 196 kL-~ld~~ey--~~l~~~l~~L~~~ 217 (222)
.+ ++..|+| +.....+++..+.
T Consensus 86 ~~l~~~~~~~~~~~A~~~~~~al~~ 110 (177)
T 2e2e_A 86 TVLYYQASQHMTAQTRAMIDKALAL 110 (177)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHh
Confidence 88 7889998 8888777766543
No 238
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=28.87 E-value=1.7e+02 Score=21.33 Aligned_cols=99 Identities=10% Similarity=0.138 Sum_probs=56.2
Q ss_pred hhhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeEeeccc--------hHHHHHHHHHHHhhhhhccCcccc
Q psy3486 76 LIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN--------YKEMMSRYKQLLLYIKSAVTRNYS 147 (222)
Q Consensus 76 l~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~idqg~--------y~~~l~~y~~LLtyiksaVtrNys 147 (222)
++..|.....+....||+.+|++...|-..+..+.-++.|.-.-+.++ -++..+.+.++....
T Consensus 48 iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~--------- 118 (155)
T 3cdh_A 48 VLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLVASA--------- 118 (155)
T ss_dssp HHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHHHHHH---------
Confidence 445555556788999999999999999988888888888875433211 244444444443322
Q ss_pred HHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCC
Q psy3486 148 EKSINSILDYISTSKNMELLQDFYETTLEALKDAKND 184 (222)
Q Consensus 148 EksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~Ne 184 (222)
.+....+++.++. .+.+.+.++.+...+.+++..++
T Consensus 119 ~~~~~~~~~~l~~-~e~~~l~~~l~~l~~~l~~~~~~ 154 (155)
T 3cdh_A 119 RAHETRLLSALAD-TDAARIKGVLRTLLDVLDRPRES 154 (155)
T ss_dssp HHHHHHHHHHTTT-SGGGGHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhcccccc
Confidence 2233344444432 34455566666666666555443
No 239
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=28.29 E-value=74 Score=25.18 Aligned_cols=43 Identities=7% Similarity=0.246 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhhccccc-ccHhHHHHHhccchhHHHHhhhh
Q psy3486 12 DLLRNIRTQVLIKLIKPYTR-IHIPFISRQLNIETSDVLIKLIK 54 (222)
Q Consensus 12 ~L~~~lr~q~Ll~li~PYsr-i~i~~ia~~l~l~~~~ve~klsd 54 (222)
.....-|...|+.++..-.+ +....+|+.+|+|...|..-+..
T Consensus 16 ~m~~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~ 59 (187)
T 1j5y_A 16 KTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAY 59 (187)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 45556788888998875434 99999999999999988766553
No 240
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=28.23 E-value=65 Score=20.52 Aligned_cols=26 Identities=0% Similarity=-0.038 Sum_probs=20.1
Q ss_pred cccccHhHHHHHhccchhHHHHhhhh
Q psy3486 29 YTRIHIPFISRQLNIETSDVLIKLIK 54 (222)
Q Consensus 29 Ysri~i~~ia~~l~l~~~~ve~klsd 54 (222)
+.......||+.+|+|...|...+..
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~r 54 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVAR 54 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34567889999999999998765544
No 241
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=28.17 E-value=1.6e+02 Score=20.97 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=34.8
Q ss_pred hhhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeEee
Q psy3486 77 IKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRID 120 (222)
Q Consensus 77 ~~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~id 120 (222)
+..|.....+..+.||+.+|++...|-..+..+.=++.|.-.-+
T Consensus 35 L~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~ 78 (144)
T 1lj9_A 35 LVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQED 78 (144)
T ss_dssp HHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecC
Confidence 34444445678999999999999999988888888888877654
No 242
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=28.11 E-value=1.5e+02 Score=20.49 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=37.7
Q ss_pred cccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCCh
Q psy3486 31 RIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIET 99 (222)
Q Consensus 31 ri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~ 99 (222)
.+.++.+|+.+|+|...+...+.+.+= .-+...++.+ +++. ..+.+. .+...|..||..+|.+.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~~g-~s~~~~~~~~--Rl~~-A~~lL~-~~~~si~~iA~~~Gf~~ 82 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNFG-IPFQDYLLQK--RMEK-AKLLLL-TTELKNYEIAEQVGFED 82 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHS-SCHHHHHHHH--HHHH-HHHHHH-HCCCCHHHHHHHTTCSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHC-cCHHHHHHHH--HHHH-HHHHHH-CCCCCHHHHHHHhCCCC
Confidence 689999999999998887766554431 1222333221 2211 112221 24667788888888754
No 243
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=27.88 E-value=52 Score=23.49 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=19.2
Q ss_pred ccchHHHHHHHHHHHhhhhhccC
Q psy3486 121 QSNYKEMMSRYKQLLLYIKSAVT 143 (222)
Q Consensus 121 qg~y~~~l~~y~~LLtyiksaVt 143 (222)
.|+|++|+.+|++=+.+...++.
T Consensus 32 ~g~y~eAl~lY~~aie~l~~alk 54 (83)
T 2w2u_A 32 EGNAEEAITNYKKAIEVLAQLVS 54 (83)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999998888766653
No 244
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=27.34 E-value=1.7e+02 Score=20.81 Aligned_cols=63 Identities=13% Similarity=0.051 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhcccccc
Q psy3486 6 IREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTR 85 (222)
Q Consensus 6 I~~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~ 85 (222)
++..+..-++.+|.+. .+....+|+.+|++.+.|-.-.. | -.+-+.
T Consensus 18 ~~~~~g~~lr~~R~~~---------gltq~elA~~~gis~~~is~~E~---------G----------------~~~p~~ 63 (114)
T 3vk0_A 18 LRAVLAYNMRLFRVNK---------GWSQEELARQCGLDRTYVSAVER---------K----------------RWNIAL 63 (114)
T ss_dssp HHHHHHHHHHHHHHHT---------TCCHHHHHHHHTCCHHHHHHHTT---------T----------------CCCCCH
T ss_pred HHHHHHHHHHHHHHHc---------CCCHHHHHHHHCcCHHHHHHHHc---------C----------------CCCCCH
Confidence 4556666666666653 56778899999998765431111 1 011244
Q ss_pred ccHhHHHHHhCCChHHH
Q psy3486 86 IHIPFISRQLNIETSDV 102 (222)
Q Consensus 86 v~i~~ia~~l~l~~~~V 102 (222)
-.+..||+.+|++.+.+
T Consensus 64 ~~l~~ia~~l~v~~~~l 80 (114)
T 3vk0_A 64 SNIEKMAAALGVAAYQL 80 (114)
T ss_dssp HHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhCCCHHHH
Confidence 45667889999887643
No 245
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=26.56 E-value=1.7e+02 Score=20.64 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhccccc
Q psy3486 5 FIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYT 84 (222)
Q Consensus 5 ~I~~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys 84 (222)
.++..+..-++.+|... .+....+|+.+|+|.+.|-.-.. |- .+-+
T Consensus 24 ~~~~~~g~~l~~~R~~~---------glsq~~lA~~~gis~~~is~~E~---------g~----------------~~~~ 69 (117)
T 3f52_A 24 LLREALGAALRSFRADK---------GVTLRELAEASRVSPGYLSELER---------GR----------------KEVS 69 (117)
T ss_dssp CHHHHHHHHHHHHHHHH---------TCCHHHHHHHTTSCHHHHHHHHT---------TS----------------SCCC
T ss_pred HHHHHHHHHHHHHHHHc---------CCCHHHHHHHHCcCHHHHHHHHC---------CC----------------CCCC
Confidence 45566666667777653 56778899999998765431110 10 1224
Q ss_pred cccHhHHHHHhCCChHHH
Q psy3486 85 RIHIPFISRQLNIETSDV 102 (222)
Q Consensus 85 ~v~i~~ia~~l~l~~~~V 102 (222)
.-.+..||+.+|++.+..
T Consensus 70 ~~~l~~la~~l~v~~~~l 87 (117)
T 3f52_A 70 SELLASVCHALGASVADV 87 (117)
T ss_dssp HHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHhCCCHHHH
Confidence 445667899999988554
No 246
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=26.29 E-value=1.1e+02 Score=18.94 Aligned_cols=46 Identities=7% Similarity=0.047 Sum_probs=28.9
Q ss_pred cccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCChHHH
Q psy3486 31 RIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDV 102 (222)
Q Consensus 31 ri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~~~V 102 (222)
.+....+|+.+|+|.+.|-.-. .| -..|-. . +..||+.+|++.+.+
T Consensus 14 glsq~~lA~~~gis~~~i~~~e---------~g---------------~~~~~~-~-l~~la~~l~~~~~~l 59 (69)
T 1r69_A 14 GLNQAELAQKVGTTQQSIEQLE---------NG---------------KTKRPR-F-LPELASALGVSVDWL 59 (69)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHH---------TT---------------SCSSCT-T-HHHHHHHTTCCHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHH---------cC---------------CCCCch-H-HHHHHHHHCcCHHHH
Confidence 5667888999998876643111 11 112322 2 788999999987654
No 247
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=25.89 E-value=1.3e+02 Score=20.48 Aligned_cols=48 Identities=13% Similarity=0.100 Sum_probs=29.6
Q ss_pred ccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCChHHH
Q psy3486 30 TRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDV 102 (222)
Q Consensus 30 sri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~~~V 102 (222)
..++...+|+.+|++.+.|-.-.. | --.| +.-.+..||+.+|++.+.+
T Consensus 21 ~glsq~~lA~~~gis~~~is~~e~---------G---------------~~~p-~~~~l~~ia~~l~v~~~~l 68 (94)
T 2kpj_A 21 SEKTQLEIAKSIGVSPQTFNTWCK---------G---------------IAIP-RMGKVQALADYFNINKSDL 68 (94)
T ss_dssp SSSCHHHHHHHHTCCHHHHHHHHT---------T---------------SCCC-CHHHHHHHHHHHTCCTHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHh---------C---------------CCCC-CHHHHHHHHHHHCcCHHHH
Confidence 457788899999998766432111 1 0122 3344566888888887654
No 248
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=25.86 E-value=2.5e+02 Score=25.02 Aligned_cols=86 Identities=9% Similarity=0.019 Sum_probs=46.9
Q ss_pred eeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhhhh
Q psy3486 119 IDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLY 198 (222)
Q Consensus 119 idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlakL~ 198 (222)
..+|+|++|+++|++.+..- +. ...+..++-..+....+.+--.+.|+..++. ...+.. ....+|.++
T Consensus 34 ~~~g~~~~A~~~~~~al~~~-p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~----~~~~la~~~ 101 (568)
T 2vsy_A 34 LGMGDTTAGEMAVQRGLALH-PG-----HPEAVARLGRVRWTQQRHAEAAVLLQQASDA--APEHPG----IALWLGHAL 101 (568)
T ss_dssp HHHTCHHHHHHHHHHHHTTS-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH----HHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHH----HHHHHHHHH
Confidence 34577888888888877732 21 1223333333222333444444555555442 222222 335678888
Q ss_pred hchhhHhHHHHHHHHHHH
Q psy3486 199 FDREDFNKLSRILKQLHQ 216 (222)
Q Consensus 199 ld~~ey~~l~~~l~~L~~ 216 (222)
...|+|++....+++..+
T Consensus 102 ~~~g~~~~A~~~~~~al~ 119 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQ 119 (568)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888877777666544
No 249
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=25.84 E-value=88 Score=28.37 Aligned_cols=73 Identities=1% Similarity=-0.065 Sum_probs=45.0
Q ss_pred HHHhhccceeeEeeccchHHHHHHHHHHHhhhhhccCcccc--HHHHHHHHHHhhcCCchHHHHHHHHHHHHHHh
Q psy3486 107 VSLILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYS--EKSINSILDYISTSKNMELLQDFYETTLEALK 179 (222)
Q Consensus 107 ~~~iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNys--EksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~ 179 (222)
+..++++.-....++|+|++|+.+|++.|.-.......+.. -.+.|++=.-+..-.+.+--..+|+-.++-++
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 44556677777789999999999999999955444444432 23455554444333344444455555555443
No 250
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=25.79 E-value=99 Score=19.01 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=14.0
Q ss_pred cccHhHHHHHhccchhHHH
Q psy3486 31 RIHIPFISRQLNIETSDVL 49 (222)
Q Consensus 31 ri~i~~ia~~l~l~~~~ve 49 (222)
.+....+|+.+|+|.+.|-
T Consensus 14 g~s~~~lA~~~gis~~~i~ 32 (66)
T 2xi8_A 14 KISQSELAALLEVSRQTIN 32 (66)
T ss_dssp TCCHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHH
Confidence 4567788888888876654
No 251
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=24.96 E-value=96 Score=21.44 Aligned_cols=35 Identities=11% Similarity=0.208 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHH
Q psy3486 12 DLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVL 49 (222)
Q Consensus 12 ~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve 49 (222)
.+-+..|.+.| ..+ -..+....||+.+|+|.+.|-
T Consensus 27 ~l~~~~r~~Il-~~L--~~~~~~~eLa~~l~is~~tv~ 61 (96)
T 1y0u_A 27 AVTNPVRRKIL-RML--DKGRSEEEIMQTLSLSKKQLD 61 (96)
T ss_dssp HHSCHHHHHHH-HHH--HTTCCHHHHHHHHTCCHHHHH
T ss_pred HhCCHHHHHHH-HHH--cCCCCHHHHHHHHCcCHHHHH
Confidence 33334444444 444 345889999999999877755
No 252
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=24.87 E-value=1.1e+02 Score=19.00 Aligned_cols=47 Identities=9% Similarity=0.095 Sum_probs=28.9
Q ss_pred cccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCChHHH
Q psy3486 31 RIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDV 102 (222)
Q Consensus 31 ri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~~~V 102 (222)
.+....+|+.+|+|.+.|-.-.. | --.| +.-.+..||+.+|++.+.+
T Consensus 18 g~s~~~lA~~~gis~~~i~~~e~---------g---------------~~~~-~~~~l~~i~~~l~~~~~~l 64 (68)
T 2r1j_L 18 KIRQAALGKMVGVSNVAISQWER---------S---------------ETEP-NGENLLALSKALQCSPDYL 64 (68)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT---------T---------------SSCC-BHHHHHHHHHHTTSCHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc---------C---------------CCCC-CHHHHHHHHHHhCCCHHHH
Confidence 46678899999998766442111 1 0122 3344667888899887653
No 253
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=24.78 E-value=67 Score=22.70 Aligned_cols=23 Identities=9% Similarity=0.332 Sum_probs=19.1
Q ss_pred ccchHHHHHHHHHHHhhhhhccC
Q psy3486 121 QSNYKEMMSRYKQLLLYIKSAVT 143 (222)
Q Consensus 121 qg~y~~~l~~y~~LLtyiksaVt 143 (222)
.|+|++|+.+|++=+.+...++.
T Consensus 24 ~g~y~eAl~lY~~aie~l~~~lk 46 (83)
T 2v6y_A 24 EGKVEDAITYYKKAIEVLSQIIV 46 (83)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999998888766653
No 254
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=24.76 E-value=1.8e+02 Score=23.77 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=12.0
Q ss_pred EeeccchHHHHHHHHH
Q psy3486 118 RIDQSNYKEMMSRYKQ 133 (222)
Q Consensus 118 ~idqg~y~~~l~~y~~ 133 (222)
...+|++++|++.|++
T Consensus 111 ~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 111 YFYDQNPDAALRTLHQ 126 (291)
T ss_dssp HHHTTCHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHhC
Confidence 3466888888888776
No 255
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=24.49 E-value=82 Score=27.82 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=37.0
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHhhcccc----cccHhHHHHHhccc-hhHHH
Q psy3486 4 PFIREHIEDL-LRNIRTQVLIKLIKPYT----RIHIPFISRQLNIE-TSDVL 49 (222)
Q Consensus 4 ~~I~~hi~~L-~~~lr~q~Ll~li~PYs----ri~i~~ia~~l~l~-~~~ve 49 (222)
|++..++-+. ...+|..+|-.+.+.|. .+.++++++.|+.+ .++++
T Consensus 192 pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~ 243 (316)
T 3t5v_A 192 PLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEII 243 (316)
T ss_dssp CHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHH
Confidence 5666665554 67899999999999994 89999999999995 45544
No 256
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=24.12 E-value=1e+02 Score=24.92 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhhcccccc-cHhHHHHHhccchhHHHHhh
Q psy3486 10 IEDLLRNIRTQVLIKLIKPYTRI-HIPFISRQLNIETSDVLIKL 52 (222)
Q Consensus 10 i~~L~~~lr~q~Ll~li~PYsri-~i~~ia~~l~l~~~~ve~kl 52 (222)
-+.+|+.|++..+-.-++|=+++ .-..+|+.||+|..-|-.-|
T Consensus 6 ~~~v~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL 49 (239)
T 2di3_A 6 HESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREAL 49 (239)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHH
Confidence 46789999999999999999999 57799999999988766443
No 257
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=23.98 E-value=1.3e+02 Score=27.33 Aligned_cols=109 Identities=20% Similarity=0.295 Sum_probs=62.2
Q ss_pred HhhccceeeEeeccchHHHHHHHHHHHhh----hh---------h---ccCccccHHHHHHHHHH-hh-cCCchHHHHHH
Q psy3486 109 LILDNTVRGRIDQSNYKEMMSRYKQLLLY----IK---------S---AVTRNYSEKSINSILDY-IS-TSKNMELLQDF 170 (222)
Q Consensus 109 ~iLdq~ik~~idqg~y~~~l~~y~~LLty----ik---------s---aVtrNysEksIn~iLd~-vs-~s~~~~~l~~f 170 (222)
.-|.++.+.+...|+|-+|--++-+...+ ++ + .++.|+.|.+--+ -|. .. ..-..+.+-+.
T Consensus 12 ~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~-~d~g~~~~~fte~~l~~l 90 (428)
T 2wm9_A 12 TWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMM-EDVGMQDVHFNEDVLMEL 90 (428)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC----------CCSSSHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccc-cccCCCccccCHHHHHHH
Confidence 33667777788889999999888733321 11 1 1445554432110 000 00 00012234447
Q ss_pred HHHHHHHHhcCCCCcee--eecchhhhhhhhchhhHhHHHHHHHHHHHhhhc
Q psy3486 171 YETTLEALKDAKNDRLW--FKTNTKLGKLYFDREDFNKLSRILKQLHQSCQM 220 (222)
Q Consensus 171 Ye~TL~~l~~~~NeRLW--fKtnlKlakL~ld~~ey~~l~~~l~~L~~~c~~ 220 (222)
|+.+.+.+..++ +.| ..+.=-|+..|=...||.+|..+.+.+.+.|..
T Consensus 91 l~~ai~~f~kg~--~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y~~ 140 (428)
T 2wm9_A 91 LEQCADGLWKAE--RYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSK 140 (428)
T ss_dssp HHHHHHHHHHTT--CGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 788888888775 222 223333444454679999999999999888763
No 258
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=23.90 E-value=1.7e+02 Score=19.55 Aligned_cols=19 Identities=11% Similarity=0.010 Sum_probs=15.0
Q ss_pred cccHhHHHHHhccchhHHH
Q psy3486 31 RIHIPFISRQLNIETSDVL 49 (222)
Q Consensus 31 ri~i~~ia~~l~l~~~~ve 49 (222)
.+....+|+.+|++.+.|-
T Consensus 31 glsq~elA~~~gis~~~is 49 (83)
T 2a6c_A 31 GLTQFKAAELLGVTQPRVS 49 (83)
T ss_dssp TCCHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHH
Confidence 6778889999999876644
No 259
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=23.85 E-value=28 Score=26.18 Aligned_cols=44 Identities=11% Similarity=0.140 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cHhHHHHHhccchhHHHHhhhh
Q psy3486 11 EDLLRNIRTQVLIKLIKPYTRI-HIPFISRQLNIETSDVLIKLIK 54 (222)
Q Consensus 11 ~~L~~~lr~q~Ll~li~PYsri-~i~~ia~~l~l~~~~ve~klsd 54 (222)
+.+++.|+...+-.-+.|=+++ ....+|+.+|+|...|..-+..
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~ 58 (126)
T 3ic7_A 14 LQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEY 58 (126)
T ss_dssp THHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4688899999998999999999 8999999999998877655543
No 260
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=23.83 E-value=2e+02 Score=20.41 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=19.7
Q ss_pred ccchHHHHHHHHHHHhhhhhccC
Q psy3486 121 QSNYKEMMSRYKQLLLYIKSAVT 143 (222)
Q Consensus 121 qg~y~~~l~~y~~LLtyiksaVt 143 (222)
.|+|++|+..|.+=+.+...++.
T Consensus 29 ~g~y~eAl~lY~~Aie~ll~alk 51 (86)
T 4a5x_A 29 ESRYPQALVCYQEGIDLLLQVLK 51 (86)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHh
Confidence 49999999999999988877664
No 261
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=23.82 E-value=1.5e+02 Score=18.96 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=14.8
Q ss_pred cccHhHHHHHhccchhHHH
Q psy3486 31 RIHIPFISRQLNIETSDVL 49 (222)
Q Consensus 31 ri~i~~ia~~l~l~~~~ve 49 (222)
.++...+|+.+|+|.+.|-
T Consensus 20 g~sq~~lA~~~gis~~~i~ 38 (78)
T 3b7h_A 20 NLTINRVATLAGLNQSTVN 38 (78)
T ss_dssp TCCHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHH
Confidence 5677889999999876644
No 262
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=23.81 E-value=1.2e+02 Score=20.08 Aligned_cols=17 Identities=6% Similarity=0.069 Sum_probs=13.5
Q ss_pred cHhHHHHHhccchhHHH
Q psy3486 33 HIPFISRQLNIETSDVL 49 (222)
Q Consensus 33 ~i~~ia~~l~l~~~~ve 49 (222)
....+|+.+|++.+.|-
T Consensus 29 sq~~lA~~~gis~~~is 45 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLR 45 (86)
T ss_dssp CHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHhCCCHHHHH
Confidence 56799999999876543
No 263
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=23.74 E-value=1.9e+02 Score=25.62 Aligned_cols=87 Identities=11% Similarity=0.007 Sum_probs=56.2
Q ss_pred Eeeccch-HHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceeeecchhhhh
Q psy3486 118 RIDQSNY-KEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGK 196 (222)
Q Consensus 118 ~idqg~y-~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWfKtnlKlak 196 (222)
...+|+| ++|+++|++.+..- |. ...+.+.+=..+....+.+--.+.|+..++. ..+ ..+...+|.
T Consensus 112 ~~~~g~~~~~A~~~~~~al~~~-p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~lg~ 178 (474)
T 4abn_A 112 LNVTPDYSPEAEVLLSKAVKLE-PE-----LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH---CKN----KVSLQNLSM 178 (474)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCC----HHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHhhC-CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC----HHHHHHHHH
Confidence 3567999 99999999999843 32 1234444444333334444444555554442 333 366778999
Q ss_pred hhhch---------hhHhHHHHHHHHHHHh
Q psy3486 197 LYFDR---------EDFNKLSRILKQLHQS 217 (222)
Q Consensus 197 L~ld~---------~ey~~l~~~l~~L~~~ 217 (222)
++... |+|++....+++..+.
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 99999 9999988888776553
No 264
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=23.53 E-value=58 Score=23.03 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=28.8
Q ss_pred cccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCChHH
Q psy3486 31 RIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSD 101 (222)
Q Consensus 31 ri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~~~ 101 (222)
.++...+|+.+|+|.+.|-. ++.+ + .| |.-.+..||+.+|+++++
T Consensus 37 glTq~eLA~~~GiS~~tis~---------------------iE~G--~--~~-s~~~l~kIa~~L~v~~~~ 81 (88)
T 3t76_A 37 DMKKGELREAVGVSKSTFAK---------------------LGKN--E--NV-SLTVLLAICEYLNCDFGD 81 (88)
T ss_dssp TCCHHHHHHHHTCCHHHHHH---------------------HHTT--C--CC-CHHHHHHHHHHHTCCGGG
T ss_pred CCCHHHHHHHHCcCHHHHHH---------------------HHcC--C--Cc-CHHHHHHHHHHHCcCHHH
Confidence 56677888888888766431 1111 1 13 455566789999988765
No 265
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.42 E-value=52 Score=18.95 Aligned_cols=23 Identities=13% Similarity=0.210 Sum_probs=18.3
Q ss_pred ccccHhHHHHHhccchhHHHHhh
Q psy3486 30 TRIHIPFISRQLNIETSDVLIKL 52 (222)
Q Consensus 30 sri~i~~ia~~l~l~~~~ve~kl 52 (222)
.-.....||+.+|+|...|..-+
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 34578899999999998887544
No 266
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=23.39 E-value=95 Score=26.28 Aligned_cols=26 Identities=8% Similarity=0.085 Sum_probs=20.2
Q ss_pred cchhhhhhhhchhhHhHHHHHHHHHH
Q psy3486 190 TNTKLGKLYFDREDFNKLSRILKQLH 215 (222)
Q Consensus 190 tnlKlakL~ld~~ey~~l~~~l~~L~ 215 (222)
+...+|.+|...|+|++.....++..
T Consensus 336 ~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 336 VCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 34568999999999999887776543
No 267
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=23.21 E-value=1.7e+02 Score=24.50 Aligned_cols=88 Identities=13% Similarity=0.050 Sum_probs=54.6
Q ss_pred HhhccceeeEeeccchHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhcCCCCceee
Q psy3486 109 LILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDAKNDRLWF 188 (222)
Q Consensus 109 ~iLdq~ik~~idqg~y~~~l~~y~~LLtyiksaVtrNysEksIn~iLd~vs~s~~~~~l~~fYe~TL~~l~~~~NeRLWf 188 (222)
.++-+.-...+.+|+|++|+++|++.+..- |. ..++..++=..+....+.+--.+.|+..++. ..+|..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~--- 265 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SN-----NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKA--- 265 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHH---
Confidence 444555556677899999999999999943 42 2344444444333334444444555555542 233433
Q ss_pred ecchhhhhhhhchhhHhHHH
Q psy3486 189 KTNTKLGKLYFDREDFNKLS 208 (222)
Q Consensus 189 KtnlKlakL~ld~~ey~~l~ 208 (222)
+...++.++...+++.+..
T Consensus 266 -a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 266 -AKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHH
Confidence 3456888999888888774
No 268
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=23.12 E-value=1.6e+02 Score=24.66 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=22.4
Q ss_pred cccccHhHHHHHhccchhHHHHhhhhh
Q psy3486 29 YTRIHIPFISRQLNIETSDVLIKLIKP 55 (222)
Q Consensus 29 Ysri~i~~ia~~l~l~~~~ve~klsd~ 55 (222)
....+.+.||+.+|+|.+.|+..|..+
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~L 202 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISEM 202 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHH
Confidence 467788999999999999999776654
No 269
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=22.92 E-value=64 Score=21.29 Aligned_cols=26 Identities=4% Similarity=-0.033 Sum_probs=20.3
Q ss_pred ccccHhHHHHHhccchhHHHHhhhhh
Q psy3486 30 TRIHIPFISRQLNIETSDVLIKLIKP 55 (222)
Q Consensus 30 sri~i~~ia~~l~l~~~~ve~klsd~ 55 (222)
...+...||+.+|+|.+.|...+...
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34677899999999999988655443
No 270
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=22.67 E-value=1.2e+02 Score=21.43 Aligned_cols=38 Identities=32% Similarity=0.199 Sum_probs=32.9
Q ss_pred cccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeE
Q psy3486 81 KPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGR 118 (222)
Q Consensus 81 epys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~ 118 (222)
+|=..+....||+.+|++...|-..+..+.-.+.|...
T Consensus 29 ~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 29 DKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 55556888999999999999999999998888888765
No 271
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=22.61 E-value=2e+02 Score=20.14 Aligned_cols=64 Identities=9% Similarity=0.107 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhcccccc
Q psy3486 6 IREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTR 85 (222)
Q Consensus 6 I~~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~ 85 (222)
+...+..-++.+|.+ ..+....+|+.+|++.+.|-.- ++. -.+-+.
T Consensus 25 ~~~~ig~~lr~~R~~---------~gltq~elA~~~gis~~~is~i---------------------E~G----~~~ps~ 70 (99)
T 3g5g_A 25 LLSKVSFVIKKIRLE---------KGMTQEDLAYKSNLDRTYISGI---------------------ERN----SRNLTI 70 (99)
T ss_dssp HHHHHHHHHHHHHHH---------TTCCHHHHHHHHTCCHHHHHHH---------------------HTT----CSCCBH
T ss_pred HHHHHHHHHHHHHHH---------cCCCHHHHHHHHCcCHHHHHHH---------------------HCC----CCCCCH
Confidence 445566666666655 3667888999999987654311 111 012244
Q ss_pred ccHhHHHHHhCCChHHHH
Q psy3486 86 IHIPFISRQLNIETSDVE 103 (222)
Q Consensus 86 v~i~~ia~~l~l~~~~VE 103 (222)
-.+..||+.+|++++.+=
T Consensus 71 ~~l~~ia~~l~v~~~~l~ 88 (99)
T 3g5g_A 71 KSLELIMKGLEVSDVVFF 88 (99)
T ss_dssp HHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHCcCHHHHh
Confidence 556779999999987653
No 272
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=22.47 E-value=1.7e+02 Score=22.58 Aligned_cols=36 Identities=11% Similarity=0.272 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHH
Q psy3486 5 FIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVL 49 (222)
Q Consensus 5 ~I~~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve 49 (222)
.+...+..-++.+|.+ ..++...+|+.+|+|.+.|-
T Consensus 7 ~~~~~~~~~l~~~r~~---------~gltq~~lA~~~gis~~~is 42 (192)
T 1y9q_A 7 MFKSQIANQLKNLRKS---------RGLSLDATAQLTGVSKAMLG 42 (192)
T ss_dssp HHHHHHHHHHHHHHHH---------TTCCHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------cCCCHHHHHHHHCcCHHHHH
Confidence 3445555556666655 36778899999999876543
No 273
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=22.26 E-value=1.5e+02 Score=21.40 Aligned_cols=45 Identities=24% Similarity=0.150 Sum_probs=36.4
Q ss_pred hccccccc-cHhHHHHHhCCChHHHHHHHHHHhhccceeeEeeccc
Q psy3486 79 LIKPYTRI-HIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123 (222)
Q Consensus 79 iiepys~v-~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~idqg~ 123 (222)
-+.|=+++ ....+|+.+|++...|..-+..+.-++.|...-..|.
T Consensus 26 ~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~G~ 71 (113)
T 3tqn_A 26 SYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGLGM 71 (113)
T ss_dssp SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCeE
Confidence 45777888 7889999999999999999999888888865444443
No 274
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=22.01 E-value=1.3e+02 Score=20.67 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhcccccccHhHHHHHhccchhHHH
Q psy3486 16 NIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVL 49 (222)
Q Consensus 16 ~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve 49 (222)
.-|-+.|. ++.- ..+....||+.+|+|.+.|-
T Consensus 23 ~~r~~Il~-~L~~-~~~~~~ela~~l~is~~tvs 54 (98)
T 3jth_A 23 ERRLQILC-MLHN-QELSVGELCAKLQLSQSALS 54 (98)
T ss_dssp HHHHHHHH-HTTT-SCEEHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHH-HHhc-CCCCHHHHHHHHCcCHHHHH
Confidence 33444444 4443 67899999999999877654
No 275
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=21.83 E-value=96 Score=19.97 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=12.3
Q ss_pred ccccHhHHHHHhCCChHH
Q psy3486 84 TRIHIPFISRQLNIETSD 101 (222)
Q Consensus 84 s~v~i~~ia~~l~l~~~~ 101 (222)
+.-.+..||+.+|++++.
T Consensus 49 ~~~~l~~ia~~l~v~~~~ 66 (73)
T 3omt_A 49 SLETLFDIAEALNVDVRE 66 (73)
T ss_dssp CHHHHHHHHHHHTSCGGG
T ss_pred CHHHHHHHHHHHCcCHHH
Confidence 444556688888888754
No 276
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=21.76 E-value=1.1e+02 Score=24.52 Aligned_cols=46 Identities=11% Similarity=-0.024 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccc-cHhHHHHHhccchhHHHHhhhhh
Q psy3486 10 IEDLLRNIRTQVLIKLIKPYTRI-HIPFISRQLNIETSDVLIKLIKP 55 (222)
Q Consensus 10 i~~L~~~lr~q~Ll~li~PYsri-~i~~ia~~l~l~~~~ve~klsd~ 55 (222)
-+.+++.|++..+-.-+.|=+++ .-..+|+.+|+|...|-.-|...
T Consensus 9 ~~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L 55 (239)
T 1hw1_A 9 AGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRL 55 (239)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 46788999999999899999999 89999999999998887665543
No 277
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=21.72 E-value=1.6e+02 Score=18.49 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccHhHHHHHhc--cchhHH
Q psy3486 8 EHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLN--IETSDV 48 (222)
Q Consensus 8 ~hi~~L~~~lr~q~Ll~li~PYsri~i~~ia~~l~--l~~~~v 48 (222)
..+..-++.+|.+ ..+....+|+.+| +|.+.|
T Consensus 7 ~~~g~~l~~~r~~---------~glsq~~lA~~~g~~is~~~i 40 (71)
T 2ewt_A 7 KQLGAKLRAIRTQ---------QGLSLHGVEEKSQGRWKAVVV 40 (71)
T ss_dssp HHHHHHHHHHHHH---------TTCCHHHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHHHH---------cCCCHHHHHHHHCCcCCHHHH
Confidence 3455555555554 2567788899999 876653
No 278
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=21.61 E-value=2.6e+02 Score=24.55 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCCCceeeecchhhhhhhhchhhHhHHHHHHHHHHHhh
Q psy3486 168 QDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC 218 (222)
Q Consensus 168 ~~fYe~TL~~l~~~~NeRLWfKtnlKlakL~ld~~ey~~l~~~l~~L~~~c 218 (222)
.+.|+..++. ..++-.+| +.++.++...|+++++..+.+...+.|
T Consensus 411 ~~~~e~al~~--~p~~~~~~----~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 411 FKIFELGLKK--YGDIPEYV----LAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHH--HTTCHHHH----HHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHH--CCCCHHHH----HHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 3444444443 23455666 567888888888888888877766654
No 279
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=21.54 E-value=2.6e+02 Score=20.89 Aligned_cols=43 Identities=9% Similarity=0.143 Sum_probs=33.8
Q ss_pred hhccccccccHhHHHHHhCCChHHHHHHHHHHhhccceeeEee
Q psy3486 78 KLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRID 120 (222)
Q Consensus 78 ~iiepys~v~i~~ia~~l~l~~~~VE~~L~~~iLdq~ik~~id 120 (222)
..|.-...+.+..||+.+|++...|-..+..+.-++.|.-.-+
T Consensus 52 ~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~ 94 (168)
T 2nyx_A 52 VILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPH 94 (168)
T ss_dssp HHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccC
Confidence 3333334588999999999999999998888888888876554
No 280
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=21.41 E-value=1e+02 Score=19.87 Aligned_cols=19 Identities=5% Similarity=0.308 Sum_probs=15.6
Q ss_pred eeccchHHHHHHHHHHHhh
Q psy3486 119 IDQSNYKEMMSRYKQLLLY 137 (222)
Q Consensus 119 idqg~y~~~l~~y~~LLty 137 (222)
..+|+|++|+++|++.+..
T Consensus 46 ~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 46 RKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 3578899999999998874
No 281
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=21.13 E-value=1.1e+02 Score=22.47 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=17.5
Q ss_pred cHhHHHHHhCCChHHHHHHHHH
Q psy3486 87 HIPFISRQLNIETSDVESLLVS 108 (222)
Q Consensus 87 ~i~~ia~~l~l~~~~VE~~L~~ 108 (222)
....||+.+|++...|...+..
T Consensus 43 s~~EIA~~lgiS~~tV~~~l~r 64 (113)
T 1xsv_A 43 SLSEIADTFNVSRQAVYDNIRR 64 (113)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4567999999999999875543
No 282
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=20.97 E-value=1.5e+02 Score=18.43 Aligned_cols=46 Identities=9% Similarity=0.037 Sum_probs=28.6
Q ss_pred cccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCChHHH
Q psy3486 31 RIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDV 102 (222)
Q Consensus 31 ri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~~~V 102 (222)
.+....+|+.+|+|.+.|-.-. +. -..|-.. +..||+.+|++.+.+
T Consensus 16 glsq~~lA~~~gis~~~i~~~e---------------------~g---~~~~~~~--l~~i~~~l~~~~~~l 61 (71)
T 1zug_A 16 KMTQTELATKAGVKQQSIQLIE---------------------AG---VTKRPRF--LFEIAMALNCDPVWL 61 (71)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHH---------------------TT---CCSSCST--HHHHHHHTTSCHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHH---------------------cC---CCCChHH--HHHHHHHHCCCHHHH
Confidence 4667888999998866543111 11 1124222 888999999987653
No 283
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=20.84 E-value=1.1e+02 Score=24.78 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhcccccccHhHHHHHhccchhHHHHh
Q psy3486 13 LLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIK 51 (222)
Q Consensus 13 L~~~lr~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~k 51 (222)
+...=|.+.|+.++.--..|..+.+|+.|+.|.+.|-.=
T Consensus 8 m~k~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrD 46 (190)
T 4a0z_A 8 LKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLD 46 (190)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHH
Confidence 456778999999999999999999999999999887643
No 284
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=20.58 E-value=48 Score=22.50 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=31.1
Q ss_pred cccccccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCChHHH
Q psy3486 27 KPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDV 102 (222)
Q Consensus 27 ~PYsri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~~~V 102 (222)
+|...+.+..||+..|+|...|-.-|... .-|.|=++-.|..+|+.+|......
T Consensus 5 ~~~~~~t~~diA~~aGVS~sTVSr~ln~~----------------------~~vs~~t~~rV~~~a~~lgY~pn~~ 58 (67)
T 2l8n_A 5 KQETAATMKDVALKAKVSTATVSRALMNP----------------------DKVSQATRNRVEKAAREVGYLPQPM 58 (67)
T ss_dssp ----CCCHHHHHHHTTCCHHHHHHTTTCC----------------------CCSCHHHHHHHHHHHHHHCCCC---
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHcCC----------------------CCCCHHHHHHHHHHHHHhCCCccHH
Confidence 34556899999999999988876333221 0123334445666788888765543
No 285
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=20.45 E-value=99 Score=26.78 Aligned_cols=37 Identities=11% Similarity=0.016 Sum_probs=29.6
Q ss_pred HHHHHHHhhcccccccHhHHHHHhccchhHHHHhhhh
Q psy3486 18 RTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIK 54 (222)
Q Consensus 18 r~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd 54 (222)
|...|++++..-..+..+.+|+.||+|...|.+-+..
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~ 42 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQT 42 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 5566778887777899999999999998887765553
No 286
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=20.40 E-value=1.3e+02 Score=19.91 Aligned_cols=48 Identities=8% Similarity=0.010 Sum_probs=28.4
Q ss_pred cccHhHHHHHhccchhHHHHhhhhhhHhhhhhhhhhhhhhhhhhhhhhhccccccccHhHHHHHhCCChHHH
Q psy3486 31 RIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDV 102 (222)
Q Consensus 31 ri~i~~ia~~l~l~~~~ve~klsd~il~~hl~~l~d~~~~~~~~~l~~iiepys~v~i~~ia~~l~l~~~~V 102 (222)
.++...+|+.+|++.+.|-+-.. | --.+-+.-.+..||+.+|++.+.+
T Consensus 23 gltq~elA~~~gis~~~is~~E~---------G---------------~~~~p~~~~l~~ia~~l~v~~~~l 70 (78)
T 3qq6_A 23 GYSLSELAEKAGVAKSYLSSIER---------N---------------LQTNPSIQFLEKVSAVLDVSVHTL 70 (78)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT---------T---------------SCCCCBHHHHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc---------C---------------CCCCCCHHHHHHHHHHHCcCHHHH
Confidence 46677888888888665431111 1 011224445667888999887553
No 287
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=20.22 E-value=1.4e+02 Score=22.59 Aligned_cols=35 Identities=9% Similarity=0.226 Sum_probs=25.0
Q ss_pred HHHHHHHhhcccccccHhHHHHHhccchhHHHHhhhhh
Q psy3486 18 RTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIKP 55 (222)
Q Consensus 18 r~q~Ll~li~PYsri~i~~ia~~l~l~~~~ve~klsd~ 55 (222)
|+=..+.+++ ......||+.+|+|...|.+.+...
T Consensus 146 r~vl~l~~~~---g~s~~EIA~~lgis~~tV~~~l~ra 180 (194)
T 1or7_A 146 RMAITLRELD---GLSYEEIAAIMDCPVGTVRSRIFRA 180 (194)
T ss_dssp HHHHHHHHTT---CCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhHHHHHc---CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444444544 5678899999999999998766554
Done!