RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3486
(222 letters)
>gnl|CDD|216479 pfam01399, PCI, PCI domain. This domain has also been called the
PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length = 100
Score = 51.4 bits (124), Expect = 6e-09
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 52 LIKPYTRIHIPFISRQLNIETSDVLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLIL 111
L+ + + R++ E L +L KPY+ I + +++ L + +VE +L LI
Sbjct: 27 LLDDGLAELLEDLRRKI-REL--NLRRLAKPYSSISLSDLAKLLGLSVDEVEKILSKLIR 83
Query: 112 DNTVRGRIDQSN 123
D +RG+IDQ N
Sbjct: 84 DGRIRGKIDQVN 95
Score = 48.0 bits (115), Expect = 1e-07
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDV---LIKLI 53
+ D + E +EDL R IR L +L KPY+ I + +++ L + +V L KLI
Sbjct: 27 LLDDGLAELLEDLRRKIRELNLRRLAKPYSSISLSDLAKLLGLSVDEVEKILSKLI 82
>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module.
Length = 88
Score = 44.9 bits (107), Expect = 1e-06
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 75 VLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123
L++L +PY+ I + +++ L + +VE L+ I D + +IDQ N
Sbjct: 14 NLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVN 62
Score = 37.6 bits (88), Expect = 5e-04
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 9 HIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDV---LIKLI 53
+E L R IR L++L +PY+ I + +++ L + +V + K I
Sbjct: 2 LVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAI 49
>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and
TRIP-15. Also called the PCI (Proteasome, COP9,
Initiation factor 3) domain. Unknown function.
Length = 88
Score = 44.9 bits (107), Expect = 1e-06
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 75 VLIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123
L++L +PY+ I + +++ L + +VE L+ I D + +IDQ N
Sbjct: 14 NLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVN 62
Score = 37.6 bits (88), Expect = 5e-04
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 9 HIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDV---LIKLI 53
+E L R IR L++L +PY+ I + +++ L + +V + K I
Sbjct: 2 LVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAI 49
>gnl|CDD|220553 pfam10075, PCI_Csn8, COP9 signalosome, subunit CSN8. This PCI_Csn8
domain is conserved from plants to humans. It is a
signature protein motif found in components of CSN (COP9
signalosome). It functions as a structural scaffold for
subunit-subunit interactions within the complex and is a
key regulator of photomorphogenic development.
Length = 144
Score = 41.9 bits (99), Expect = 4e-05
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIK 54
I L IR ++ + K Y+ I I ++ L + + + L K K
Sbjct: 67 DWSEDYTPFIAGLEDTIRDEIAALVGKAYSSISIDDLAELLGLSSDEELEKFAK 120
Score = 27.6 bits (62), Expect = 3.1
Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 2 DDPFIRE--HIEDLLRNIRTQVLIKLIK--PYTRIHIPFISRQLNIETSDVLIKLIKPYT 57
+P I++ + LL + ++ ++ + PFI+ + ++ + K Y+
Sbjct: 37 SNPEIQQLLTLGQLLWENDYAKFWQTLRSNDWSEDYTPFIAGLEDTIRDEIAALVGKAYS 96
Query: 58 RIHIPFISRQLNIETSDVLIKLIK 81
I I ++ L + + + L K K
Sbjct: 97 SISIDDLAELLGLSSDEELEKFAK 120
>gnl|CDD|227488 COG5159, RPN6, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 421
Score = 39.9 bits (93), Expect = 5e-04
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 1 MDDPFIREHIEDLLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDVLIKLIK 54
D FIR H++ L + + L+K+I+P++ + I I+ + ++T+ V KL +
Sbjct: 313 HQDSFIRSHLQYLYDVLLEKNLVKIIEPFSVVEISHIADVIGLDTNQVEGKLSQ 366
Score = 39.1 bits (91), Expect = 0.001
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 76 LIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123
L+K+I+P++ + I I+ + ++T+ VE L +ILD G +DQ +
Sbjct: 334 LVKIIEPFSVVEISHIADVIGLDTNQVEGKLSQMILDKIFYGTLDQGD 381
>gnl|CDD|222566 pfam14134, DUF4301, Domain of unknown function (DUF4301). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 505 and 516 amino
acids in length.
Length = 513
Score = 28.7 bits (65), Expect = 2.6
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 123 NYKEMMSRYKQLLL------------YIKSAVTRNYSEKSINSILDYISTSKNMELLQDF 170
KE YK+LL Y++ SE+ + I+D++ ++L +DF
Sbjct: 298 RLKEETVLYKKLLAGKLVELQEKIFKYLRLLDKGKVSEEELEEIVDFLEDELCIKLPEDF 357
Query: 171 YETTLEALKD 180
+ + E L +
Sbjct: 358 EKFSDEELIE 367
>gnl|CDD|225559 COG3014, COG3014, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 449
Score = 28.0 bits (62), Expect = 5.1
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 169 DFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQS 217
YE + + K KN LW + + G D+ +L Q
Sbjct: 42 KAYEQSKQFTKKKKNALLW---DLQNGLSALYARDYATSLGVLDAAEQR 87
>gnl|CDD|236480 PRK09358, PRK09358, adenosine deaminase; Provisional.
Length = 340
Score = 27.4 bits (62), Expect = 6.5
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 146 YSEKSINSILD-YISTSKNMELLQDFYETTLEALKDAKND 184
Y + + S LD Y + ++ +D E L+DA D
Sbjct: 54 YDFRDLQSFLDKYDAGVAVLQTEEDLRRLAFEYLEDAAAD 93
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.384
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,152,180
Number of extensions: 1055387
Number of successful extensions: 1339
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1337
Number of HSP's successfully gapped: 46
Length of query: 222
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 129
Effective length of database: 6,812,680
Effective search space: 878835720
Effective search space used: 878835720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)