RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3486
         (222 letters)



>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 84

 Score = 49.4 bits (118), Expect = 7e-09
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 76  LIKLIKPYTRIHIPFISRQLNIETSDVESLLVSLILDNTVRGRIDQSN 123
           L+   K Y  I    +   L I  +  E +   +I +  + G IDQ +
Sbjct: 21  LLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQID 68



 Score = 32.4 bits (74), Expect = 0.008
 Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 3/45 (6%)

Query: 13 LLRNIRTQVLIKLIKPYTRIHIPFISRQLNIETSDV---LIKLIK 54
          L R +    L+   K Y  I    +   L I  +       ++I 
Sbjct: 12 LDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMIT 56


>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain
           {Thermotoga maritima [TaxId: 2336]}
          Length = 105

 Score = 26.7 bits (59), Expect = 1.1
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 163 NMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQM 220
           +ME L  F + T E L++  +  L  + N +      D E  N+  R L  L      
Sbjct: 3   HMEYLGVFVDETKEYLQNLNDTLLELEKNPE------DMELINEAFRALHTLKGMAGT 54


>d1jyoe_ d.184.1.2 (E:) Virulence effector SptP domain {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 102

 Score = 26.5 bits (58), Expect = 1.3
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 132 KQLLLYIKSAVTRNYSEKSINSILDYISTSKNMELLQDFYETTLEALKDA 181
           +++L     A+T  Y E ++N  L     + N  L Q       E +K A
Sbjct: 42  QKILQTFLHALTEKYGETAVNDALLMSRINMNKPLTQRLAVQITECVKAA 91


>d1f1sa1 a.102.3.2 (A:249-619) Hyaluronate lyase {Streptococcus
           agalactiae [TaxId: 1311]}
          Length = 371

 Score = 24.9 bits (54), Expect = 9.7
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 91  ISRQLNIETSDVESLLVSLILDNTVRGRIDQSNYKEMMSRYKQLLLYIKSAVTRNYSEKS 150
           ISR+     +    +L   +       R+   + +E     K     IK+ +T N     
Sbjct: 296 ISREAASSHAAAVEVLRGFL-------RLANMSNEERNLDLKST---IKTIITSNKFYNV 345

Query: 151 INSILDYISTSKNMELLQD 169
            N++  Y   +   +LL D
Sbjct: 346 FNNLKSYSDIANMNKLLND 364


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.384 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 789,462
Number of extensions: 35444
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 23
Length of query: 222
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,281,736
Effective search space: 179443040
Effective search space used: 179443040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)