BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3487
(538 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KCJ|A Chain A, Solution Structure Of Fapp1 Ph Domain
Length = 108
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 18 MKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQT---EDSC 74
M+G L+KWTNYL G+Q RWFVL NG+LSYY +Q ++ +G+I + I+ +++
Sbjct: 9 MEGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKVHSADNTR 68
Query: 75 TFIISNGVQTFHIKASNEVERQRWVTALELAKS 107
+I G Q F++KA N ERQRW+ AL +K+
Sbjct: 69 MELIIPGEQHFYMKAVNAAERQRWLVALGSSKA 101
>pdb|2RSG|A Chain A, Solution Structure Of The Cert Ph Domain
Length = 94
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Query: 16 AEMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQTE--DS 73
E G L KWTNY+ G+Q RW VL N LSYY+++ E + CRG+I L A+I D
Sbjct: 1 VERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHDFDE 60
Query: 74 CTFIISNGVQTFHIKASNEVERQRWVTALELAKS 107
C F IS ++++A + RQ+W+ A+E K+
Sbjct: 61 CRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKT 94
>pdb|3RCP|A Chain A, Crystal Structure Of The Fapp1 Pleckstrin Homology Domain
Length = 103
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 19 KGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQT---EDSCT 75
+G L+KWTNYL G+Q RWFVL NG+LSYY +Q ++ +G+I I+ +++
Sbjct: 2 EGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKXAVCEIKVHSADNTRX 61
Query: 76 FIISNGVQTFHIKASNEVERQRWVTALELAKSKARQHALV 115
+I G Q F+ KA N ERQRW+ AL +K+ LV
Sbjct: 62 ELIIPGEQHFYXKAVNAAERQRWLVALGSSKASLTDTRLV 101
>pdb|3OUH|A Chain A, Phd2-R127 With Jnj41536014
pdb|3OUJ|A Chain A, Phd2 With 2-Oxoglutarate
Length = 237
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 8/100 (8%)
Query: 419 NLVFTKSSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSN 478
+ + ++ + EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C
Sbjct: 33 DFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCET 89
Query: 479 IGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKMLKEVY 518
IG L+S +D +I NG++G + INGRTK + Y
Sbjct: 90 IGLLMSSMDDLIRHC-----NGKLGSYKINGRTKAMVACY 124
>pdb|2G19|A Chain A, Cellular Oxygen Sensing: Crystal Structure Of Hypoxia-
Inducible Factor Prolyl Hydroxylase (Phd2)
Length = 244
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 8/100 (8%)
Query: 419 NLVFTKSSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSN 478
+ + ++ + EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C
Sbjct: 33 DFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCET 89
Query: 479 IGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKMLKEVY 518
IG L+S +D +I NG++G + INGRTK + Y
Sbjct: 90 IGLLMSSMDDLIRHC-----NGKLGSYKINGRTKAMVACY 124
>pdb|3HQR|A Chain A, Phd2:mn:nog:hif1-Alpha Substrate Complex
Length = 246
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 8/100 (8%)
Query: 419 NLVFTKSSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSN 478
+ + ++ + EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C
Sbjct: 32 DFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCET 88
Query: 479 IGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKMLKEVY 518
IG L+S +D +I NG++G + INGRTK + Y
Sbjct: 89 IGLLMSSMDDLIRHC-----NGKLGSYKINGRTKAMVACY 123
>pdb|2G1M|A Chain A, Cellular Oxygen Sensing: Crystal Structure Of Hypoxia-
Inducible Factor Prolyl Hydroxylase (Phd2)
pdb|3HQU|A Chain A, Phd2:fe:un9:partial Hif1-Alpha Substrate Complex
Length = 246
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 8/100 (8%)
Query: 419 NLVFTKSSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSN 478
+ + ++ + EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C
Sbjct: 32 DFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCET 88
Query: 479 IGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKMLKEVY 518
IG L+S +D +I NG++G + INGRTK + Y
Sbjct: 89 IGLLMSSMDDLIRHC-----NGKLGSYKINGRTKAMVACY 123
>pdb|3OUI|A Chain A, Phd2-R717 With 40787422
Length = 213
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 8/107 (7%)
Query: 419 NLVFTKSSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSN 478
+ + ++ + EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C
Sbjct: 33 DFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCET 89
Query: 479 IGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKMLKEVYGHARVGH 525
IG L+S +D +I NG++G + INGRTK + Y G+
Sbjct: 90 IGLLMSSMDDLIRHC-----NGKLGSYKINGRTKAMVACYPGNGTGY 131
>pdb|2HBT|A Chain A, Crystal Structure Of Hif Prolyl Hydroxylase Egln-1 In
Complex With A Biologically Active Inhibitor
pdb|2HBU|A Chain A, Crystal Structure Of Hif Prolyl Hydroxylase Egln-1 In
Complex With A Biologically Active Inhibitor
Length = 247
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 8/100 (8%)
Query: 419 NLVFTKSSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSN 478
+ + ++ + EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C
Sbjct: 33 DFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCET 89
Query: 479 IGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKMLKEVY 518
IG L+S +D +I NG++G + INGRTK + Y
Sbjct: 90 IGLLMSSMDDLIRHC-----NGKLGSYKINGRTKAMVACY 124
>pdb|2Y33|A Chain A, S-Nitrosylated Phd2 (Gsno Soaked) In Complex With Zn(Ii)
And Un9
pdb|2Y34|A Chain A, S-Nitrosylated Phd2 (No Exposed) In Complex With Fe(Ii)
And Un9
Length = 252
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 8/100 (8%)
Query: 419 NLVFTKSSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSN 478
+ + ++ + EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C
Sbjct: 38 DFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCET 94
Query: 479 IGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKMLKEVY 518
IG L+S +D +I NG++G + INGRTK + Y
Sbjct: 95 IGLLMSSMDDLIRHC-----NGKLGSYKINGRTKAMVAXY 129
>pdb|2D9X|A Chain A, Solution Structure Of The Ph Domain Of Oxysterol Binding
Protein-Related Protein 11 From Human
Length = 120
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 60/96 (62%), Gaps = 5/96 (5%)
Query: 14 SDAEMKGWLFKWTNYLKGYQKRWFVLSN--GLLSYYRNQAEMSHTCRGTISLRGAII--Q 69
S + G+L K+TN + G+Q R+FVL+N GLL Y+ N+ + RGT+ L GA+I
Sbjct: 6 SGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPS 65
Query: 70 TEDSCTFIISNGV-QTFHIKASNEVERQRWVTALEL 104
EDS TF ++ + + ++A++ ERQ WV+ L++
Sbjct: 66 DEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQI 101
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 11/92 (11%)
Query: 20 GWLFKW-TNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTI---SLRGAIIQTEDSC- 74
GWLFK ++ +K + KRWFVL + L YY+++ E S G+I S R A +Q D+
Sbjct: 26 GWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEES--ILGSIPLLSFRVAAVQPSDNIS 83
Query: 75 ---TFIISN-GVQTFHIKASNEVERQRWVTAL 102
TF + GV+T+ A + E++ W+ A+
Sbjct: 84 RKHTFKAEHAGVRTYFFSAESPEEQEAWIQAM 115
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 11/92 (11%)
Query: 20 GWLFKW-TNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTI---SLRGAIIQTEDSC- 74
GWLFK ++ +K + KRWFVL + L YY+++ E S G+I S R A +Q D+
Sbjct: 15 GWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEES--ILGSIPLLSFRVAAVQPSDNIS 72
Query: 75 ---TFIISN-GVQTFHIKASNEVERQRWVTAL 102
TF + GV+T+ A + E++ W+ A+
Sbjct: 73 RKHTFKAEHAGVRTYFFSAESPEEQEAWIQAM 104
>pdb|1ZHT|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 7-Hydroxycholesterol
pdb|1ZHW|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 20-hydroxycholesterol
pdb|1ZHX|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 25-Hydroxycholesterol
pdb|1ZHY|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Cholesterol
pdb|1ZHZ|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Ergosterol
Length = 438
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 25/142 (17%)
Query: 132 KPFNPLLGETY----ECDRTADAGWKAF-SEQVSHHPPIAAQYVEGKAWKAWQDLAVHSK 186
KP NP LGE + E + G SEQVSHHPP+ A + K K
Sbjct: 113 KPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKV--------K 164
Query: 187 FRGKYIQVTPAGRFNLVFTKSNQHYTWNRVQST----------VHNVIVGNLWVDQHGES 236
+G Y Q+ + +L+ T +T ++ + ++V + +V+ G+S
Sbjct: 165 LQG-YNQIKASFTKSLMLTVKQFGHTMLDIKDESYLVTPPPLHIEGILVASPFVELEGKS 223
Query: 237 DVINVTTGSTCRLTFYPYSYFS 258
I +TG C + F YFS
Sbjct: 224 -YIQSSTGLLCVIEFSGRGYFS 244
>pdb|1U5D|A Chain A, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|B Chain B, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|C Chain C, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|D Chain D, Crystal Structure Of The Ph Domain Of Skap55
Length = 108
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 32 YQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQ---------TEDSCTFIISNGV 82
+QKRW V+S GL YY N E S +GT ++G ++ ++SC + S
Sbjct: 23 WQKRWCVVSRGLFYYYAN--EKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDR 80
Query: 83 QTFHIKASNEVERQRWVTALEL 104
+T+ A++ E + WV +
Sbjct: 81 RTYEFTATSPAEARDWVDQISF 102
>pdb|3SPW|A Chain A, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
pdb|3SPW|B Chain B, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
Length = 436
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 25/142 (17%)
Query: 132 KPFNPLLGETY----ECDRTADAGWKAF-SEQVSHHPPIAAQYVEGKAWKAWQDLAVHSK 186
KP NP LGE + E + G SEQVSHHPP+ A + K K
Sbjct: 111 KPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKV--------K 162
Query: 187 FRGKYIQVTPAGRFNLVFTKSNQHYTWNRVQST----------VHNVIVGNLWVDQHGES 236
+G Y Q+ + +L+ T +T ++ + ++V + +V+ G+S
Sbjct: 163 LQG-YNQIKASFTKSLMLTVKQFGHTMLDIKDESYLVTPPPLHIEGILVASPFVELEGKS 221
Query: 237 DVINVTTGSTCRLTFYPYSYFS 258
I +TG C + F YFS
Sbjct: 222 -YIQSSTGLLCVIEFSGRGYFS 242
>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein
From Human
Length = 115
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 20/96 (20%)
Query: 19 KGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQTEDSCT--- 75
+G++ K + K + +RWFVL ++SYY ++ +G I+ E+ C
Sbjct: 11 QGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDK--------KGDILLDENCCVESL 62
Query: 76 ---------FIISNGVQTFHIKASNEVERQRWVTAL 102
F++ +TF I AS++ ++Q W+ A+
Sbjct: 63 PDKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQAI 98
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 30 KGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGA--IIQT---EDSCTFIISNGVQT 84
+ ++KRWFVL L Y+ N +E +GT+ +R A II E+ I+++ +T
Sbjct: 77 RNWKKRWFVLRQSKLMYFENDSE--EKLKGTVEVRSAKEIIDNTNKENGIDIIMAD--RT 132
Query: 85 FHIKASNEVERQRWVTALELAKSKARQ 111
FH+ A + + +W + L S Q
Sbjct: 133 FHLIAESPEDASQWFSVLSQVHSSTDQ 159
>pdb|2YS3|A Chain A, Solution Structure Of The Ph Domain Of Kindlin-3 From
Human
Length = 137
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 29 LKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQTEDSCT---FIIS------ 79
LKGY++ W V LSYY++Q E ++L+G + + + + F I
Sbjct: 25 LKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSP 84
Query: 80 NGVQTFHIKASNEVERQRWVTALELAKSKARQHA 113
G+ +++ +E + RW+ LA SK R A
Sbjct: 85 EGMSEIYLRCQDEQQYARWMAGCRLA-SKGRTMA 117
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Query: 19 KGWLFKW-TNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTI---SLRGAIIQTEDSC 74
+GWL+K + +K ++KRWFVLS+ L YYR++ E G+I S + A++ +ED
Sbjct: 24 RGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKE--EGILGSILLPSFQIALLTSEDHI 81
Query: 75 ----TFIISN-GVQTFHIKASNEVERQRWVTAL 102
F ++ ++T++ E + W+ A+
Sbjct: 82 NRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAM 114
>pdb|2COD|A Chain A, Solution Structure Of The N-Terminal Ph Domain Of Arap2
Protein From Human
Length = 115
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 32 YQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRG-AIIQTEDSCTFIISNGVQTFHIKAS 90
+QKRW +SYY N+ EM +G I L + ++ + F + +TF +
Sbjct: 25 FQKRWVKFDGLSISYYNNEKEM--YSKGIIPLSAISTVRVQGDNKFEVVTTQRTFVFRVE 82
Query: 91 NEVERQRWVTAL 102
E ER W++ L
Sbjct: 83 KEEERNDWISIL 94
>pdb|1ZI7|A Chain A, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|B Chain B, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|C Chain C, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
Length = 406
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 25/135 (18%)
Query: 132 KPFNPLLGETY----ECDRTADAGWKAF-SEQVSHHPPIAAQYVEGKAWKAWQDLAVHSK 186
KP NP LGE + E + G SEQVSHHPP+ A + K K
Sbjct: 84 KPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKV--------K 135
Query: 187 FRGKYIQVTPAGRFNLVFTKSNQHYTWNRVQST----------VHNVIVGNLWVDQHGES 236
+G Y Q+ + +L+ T +T ++ + ++V + +V+ G+S
Sbjct: 136 LQG-YNQIKASFTKSLMLTVKQFGHTMLDIKDESYLVTPPPLHIEGILVASPFVELEGKS 194
Query: 237 DVINVTTGSTCRLTF 251
I +TG C + F
Sbjct: 195 -YIQSSTGLLCVIEF 208
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 7 TDIKASHSDAEMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRG- 65
D+ + + + +GWL K +K +++RWF+L++ L Y+ + RG I L
Sbjct: 204 NDLTYTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYF--EYTTDKEPRGIIPLENL 261
Query: 66 AIIQTED 72
+I + ED
Sbjct: 262 SIREVED 268
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 7 TDIKASHSDAEMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRG- 65
D+ + + + +GWL K +K +++RWF+L++ L Y+ + RG I L
Sbjct: 204 NDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYF--EYTTDKEPRGIIPLENL 261
Query: 66 AIIQTED 72
+I + ED
Sbjct: 262 SIREVED 268
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 18/108 (16%)
Query: 11 ASHSDAEMK-GWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQ 69
+S S +K GWL K + +K +Q+R+FVL L YY+++ + +G + L G I+
Sbjct: 2 SSGSSGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKP--QGCMYLPGCTIK 59
Query: 70 T-----EDSCTFIIS----------NGVQTFHIKASNEVERQRWVTAL 102
E++ F+ G ++ + AS++ E + WV L
Sbjct: 60 EIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFL 107
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 15 DAEMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRG-AIIQTED 72
+ + +GWL K +K +++RWF+L++ L Y+ + RG I L +I + ED
Sbjct: 2 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEP--RGIIPLENLSIREVED 58
>pdb|2LKO|A Chain A, Structural Basis Of Phosphoinositide Binding To Kindlin-2
Pleckstrin Homology Domain In Regulating Integrin
Activation
Length = 138
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 29 LKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQTEDSCT---------FIIS 79
LKGY++ W + +S Y+++ E S T ++LRG + + + + ++
Sbjct: 27 LKGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVA 86
Query: 80 NGVQTFHIKASNEVERQRWVTALELAKSKARQHA 113
G+ ++ NE + W+ A LA SK + A
Sbjct: 87 EGMNEIWLRCDNEKQYAHWMAACRLA-SKGKTMA 119
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 15 DAEMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRG-AIIQTED 72
+ + +GWL K +K +++RWF+L++ L Y+ + RG I L +I + ED
Sbjct: 2 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEP--RGIIPLENLSIREVED 58
>pdb|4F7H|A Chain A, The Crystal Structure Of Kindlin-2 Pleckstrin Homology
Domain In Free Form
Length = 173
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 29 LKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQTEDSCT---------FIIS 79
LKGY++ W + +S Y+++ E S T ++LRG + + + + ++
Sbjct: 63 LKGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVA 122
Query: 80 NGVQTFHIKASNEVERQRWVTALELAKSKARQHA 113
G+ ++ NE + W+ A LA SK + A
Sbjct: 123 EGMNEIWLRCDNEKQYAHWMAACRLA-SKGKTMA 155
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology
Domain In Complex With Inositol
1,3,4,5-Tetrakisphosphate
Length = 123
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 18 MKGWLFKW-TNYLKGYQKRWFVLSNGLLSYYRNQAEMS 54
++GWL K ++ L+ +++RWFVLS L YY++ E S
Sbjct: 13 IRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREES 50
>pdb|2LUL|A Chain A, Solution Nmr Structure Of Ph Domain Of Tyrosine-Protein
Kinase Tec From Homo Sapiens, Northeast Structural
Genomics Consortium (Nesg) Target Hr3504c
Length = 164
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 32 YQKRWFVLSNGLLSYYRNQAEMSH----------TCRGTISLRGAIIQTEDSCTFIISNG 81
Y++R FVL+ +L+YY +AE + C + +I ++ F + +
Sbjct: 36 YKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHD 95
Query: 82 VQTFHIKASNEVERQRWVTALE 103
T +I A + R WV L+
Sbjct: 96 ANTLYIFAPSPQSRDLWVKKLK 117
>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4
pdb|1FGZ|A Chain A, Grp1 Ph Domain (Unliganded)
Length = 127
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 15 DAEMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQ 69
+ + +GWL K +K +++RWF+L++ L Y+ + RG I L I+
Sbjct: 4 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEP--RGIIPLENLSIR 56
>pdb|2DHI|A Chain A, Solution Structure Of The Ph Domain Of Evectin-2 From
Mouse
Length = 120
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 20 GWLFKWTNYLKGYQKRWFVL-SNGLLSYYRNQAEMS 54
GWL + + LK ++K WF L S+G L YY +Q S
Sbjct: 12 GWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQS 47
>pdb|1V5U|A Chain A, Solution Structure Of The C-Terminal Pleckstrin Homology
Domain Of Sbf1 From Mouse
Length = 117
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 19 KGWLFKWTNYLKGYQKRWFVL--SNGLLSYYRNQAEMSHTCRGTISLR------------ 64
+G L+K ++K ++ RWFVL + L YY ++ M C+G I L
Sbjct: 11 EGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHR--MDTECKGVIDLAEVEAVAPGTPTI 68
Query: 65 GAIIQTEDSCTFIISNGVQTFHIKASNEVERQRWVTALE 103
GA ++ F + + ++ A + Q+WV ++
Sbjct: 69 GAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQ 107
>pdb|2HH7|A Chain A, Crystal Structure Of Cu(I) Bound Csor From Mycobacterium
Tuberculosis
Length = 119
Score = 32.3 bits (72), Expect = 0.69, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 446 QLVSNKSTNKQDLKTIRG--DQITWIDGRETYCSNIGRLISEVDAIIMRANR-MVNN 499
+L + K LKT+RG D I + + YC ++ + IS V + + RANR M++N
Sbjct: 4 ELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHN 60
>pdb|3E96|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Clausii
pdb|3E96|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Clausii
Length = 316
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 393 WKAWQDLAVHSKFRGKYIQVTPAGRFNLVFTKSSMAVLHEVLGMYHSGV----FKDGQLV 448
W+ W+D+ RGKY Q N+V K +M +L + G+ + V +D QLV
Sbjct: 239 WRIWEDIVPFEDLRGKYNQGN-----NVVVIKEAMEMLRQNAGVTRAPVNELSNEDKQLV 293
Query: 449 SNKSTNKQDLKTIRGD 464
+ ++ + L+ +G+
Sbjct: 294 TELLSSWKLLQPTKGE 309
>pdb|3AJ4|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From
Human Complexed With O-Phospho-L-Serine
pdb|3AJ4|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From
Human Complexed With O-Phospho-L-Serine
pdb|3VIA|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From
Human
pdb|3VIA|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From
Human
Length = 112
Score = 32.0 bits (71), Expect = 0.86, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 20 GWLFKWTNYLKGYQKRWFVL-SNGLLSYYRNQ 50
GWL + + LK ++K WF L S+G L YY +Q
Sbjct: 9 GWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQ 40
>pdb|1FAO|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1PHISH IN COMPLEX WITH INOSITOL 1,3,4,5-
Tetrakisphosphate
pdb|1FB8|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1/phish
Length = 126
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 9 IKASHSDAEMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAI- 67
+ + S +G+L K +K ++ RWF L L Y+++Q ++ A+
Sbjct: 11 VPTAPSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQ 70
Query: 68 --IQTEDSCTFIISNGVQTFHIKASNEVERQRWVTALELAKSKARQH 112
E F + +TF++ A VE W+ L S+ R+
Sbjct: 71 FDYSQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQ 117
>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex
With N-(4-
(5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h-
Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide
Length = 446
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 19 KGWLFKWTNYLKGYQKRWFVLSN-GLLSYYRNQAEMSHTCRGTIS----LRGAIIQTE-- 71
+GWL K Y+K ++ R+F+L N G Y+ + + ++ + +++TE
Sbjct: 9 EGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERP 68
Query: 72 DSCTFII------SNGVQTFHIKASNEVERQRWVTALELAKSKARQHA 113
TFII + +TFH++ ER+ W TA++ ++ A
Sbjct: 69 RPNTFIIRCLQWTTVIERTFHVETPE--EREEWTTAIQTVADGLKKQA 114
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,4,5)p3
Length = 129
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 29/118 (24%)
Query: 17 EMKGWLFKWTN-YLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQTED--- 72
+ +GWL K +K +++RWF+L++ L Y+ + RG I L I+ D
Sbjct: 12 DREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEP--RGIIPLENLSIREVDDPR 69
Query: 73 --SC--TFIISNGVQ-------------------TFHIKASNEVERQRWVTALELAKS 107
+C +I +N Q + I A + E+ W+ +++ A S
Sbjct: 70 KPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSIQAAVS 127
>pdb|4BBK|A Chain A, Structural And Functional Characterisation Of The
Kindlin-1 Pleckstrin Homology Domain
Length = 165
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 29 LKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQTEDSCT---------FIIS 79
LK ++ WFV + ++Y++N+ ++LRG I + + + ++
Sbjct: 42 LKACKQYWFVFKDTSIAYFKNKELEQGEPIEKLNLRGCEIVPDVNVSGRKFGIKLLIPVA 101
Query: 80 NGVQTFHIKASNEVERQRWVTALELAKSKARQHA 113
+G+ +++ +E + RW+ A LA SK + A
Sbjct: 102 DGMNEVYLRCDHEDQYARWMAACILA-SKGKTMA 134
>pdb|1V5W|A Chain A, Crystal Structure Of The Human Dmc1 Protein
pdb|1V5W|B Chain B, Crystal Structure Of The Human Dmc1 Protein
Length = 343
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 441 VFKDGQLVSNKSTNKQDLKTIRGDQITWIDG-----RETYCSNIGRLISEVDAIIMRANR 495
+F+D L+ N D+K ++ I I G R C+ G ++VD I AN+
Sbjct: 23 LFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANK 82
Query: 496 MVNNGRMGDFVINGRTKML 514
++ G + F + + KM+
Sbjct: 83 LIEPGFLTAFEYSEKRKMV 101
>pdb|2ZJB|A Chain A, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
pdb|2ZJB|B Chain B, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
Length = 343
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 441 VFKDGQLVSNKSTNKQDLKTIRGDQITWIDG-----RETYCSNIGRLISEVDAIIMRANR 495
+F+D L+ N D+K ++ I I G R C+ G ++VD I AN+
Sbjct: 23 LFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANK 82
Query: 496 MVNNGRMGDFVINGRTKML 514
++ G + F + + KM+
Sbjct: 83 LIEPGFLTAFEYSEKRKMV 101
>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology
Domain Unliganded
Length = 138
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 15 DAEMKGWLFKWTN-YLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRG-AIIQTED 72
+ + +GWL K +K +++RWF+L++ L Y+ + RG I L +I + ED
Sbjct: 14 NPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEP--RGIIPLENLSIREVED 71
>pdb|2D9V|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin
Homology Domain-Containing Protein Family B Member 1
From Mouse
Length = 130
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 20 GWLFKWTNYLKGYQKRWFVL-SNGLLSYYRNQAEMSHTCRGTISLRGAIIQTEDSC 74
GWL++ ++ L+ +++ WF L +G L YY ++ R I I+ C
Sbjct: 12 GWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQEC 67
>pdb|2DA0|A Chain A, Solution Structure Of The Ph Domain Of Pip2-Dependent Arf1
Gtpase-Activating Protein From Human
Length = 114
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 17 EMKGWLFKWTNYL-KGYQKRWFVLSNGLLSYYRNQAEMSHTC--RGTISLRGAIIQ---- 69
E KG+L K ++ + K +Q+R + NG+L+ +SH R L Q
Sbjct: 11 EKKGYLLKKSDGIRKVWQRRKCSVKNGILT-------ISHATSNRQPAKLNLLTCQVKPN 63
Query: 70 TEDSCTFIISNGVQTFHIKASNEVERQRWVTALELAKSKA 109
ED +F + + +T+H +A +E + W++ L +K +A
Sbjct: 64 AEDKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSKEEA 103
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 495 RMVNNGRMGDFVINGRTKMLKEVYGHARVGHEKL 528
+M + GR+G F+ + L +V GH R G E L
Sbjct: 47 KMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVL 80
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 495 RMVNNGRMGDFVINGRTKMLKEVYGHARVGHEKL 528
+M + GR+G F+ + L +V GH R G E L
Sbjct: 47 KMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVL 80
>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol
(3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human
Length = 125
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 20 GWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMS-------HTCRGTISLRGAIIQTED 72
G+ K +K +++R+F L + Y++++ E + + I D
Sbjct: 18 GYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRD 77
Query: 73 SCTFIISNGVQTFHIKASNEVERQRWVTALELA 105
+ I++ +TF+++A + E W+ A+ A
Sbjct: 78 NLFEIVTTS-RTFYVQADSPEEMHSWIKAVSGA 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,390,959
Number of Sequences: 62578
Number of extensions: 664404
Number of successful extensions: 1415
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1346
Number of HSP's gapped (non-prelim): 64
length of query: 538
length of database: 14,973,337
effective HSP length: 103
effective length of query: 435
effective length of database: 8,527,803
effective search space: 3709594305
effective search space used: 3709594305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)