RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3487
(538 letters)
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding
protein; HET: HC3; 1.50A {Saccharomyces cerevisiae}
SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A*
3spw_A* 1zi7_A
Length = 438
Score = 163 bits (414), Expect = 5e-45
Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 16/161 (9%)
Query: 113 ALVAAFSTSAYST-------TAVRTGKPFNPLLGETYECDRTADAGWKA-----FSEQVS 160
V + S + + KP NP LGE + + SEQVS
Sbjct: 87 LAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVS 146
Query: 161 HHPPIAAQYVEGKA--WKAWQDLAVHSKFRGKYIQVTPAGRFNLVFTKSNQHYTWNRVQS 218
HHPP+ A + K + + F K + +T + + ++ Y
Sbjct: 147 HHPPVTAFSIFNDKNKVKLQGYNQIKASF-TKSLMLTVKQFGHTMLDIKDESYLVTPPPL 205
Query: 219 TVHNVIVGNLWVDQHGESDVINVTTGSTCRLTFYPYSYFSR 259
+ ++V + +V+ G+S I +TG C + F YFS
Sbjct: 206 HIEGILVASPFVELEGKS-YIQSSTGLLCVIEFSGRGYFSG 245
Score = 99.2 bits (247), Expect = 2e-22
Identities = 33/191 (17%), Positives = 56/191 (29%), Gaps = 45/191 (23%)
Query: 279 PEKPPGSMQIWSILKN--SIGKDLSTIPMPLNFSEPLSMLQRLTEDFEYAHVLDEAAATD 336
P + S S LK+ S DLS++ P P+S+ + E+ + E + +
Sbjct: 5 PSQYASSSSWTSFLKSIASFNGDLSSLSAPPFILSPISLTEFSQYWAEHPELFLEPSFIN 64
Query: 337 DV------------------------------FRAPQYYCFTKFACQ-------LNELEE 359
D ++ + L EL
Sbjct: 65 DDNYKEHCLIDPEVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFV 124
Query: 360 GVAPTDS-RLRPDQRLL-E-VSHHPPIAAQYVEGKA--WKAWQDLAVHSKFRGKYIQVTP 414
G + LL E VSHHPP+ A + K + + F K + +T
Sbjct: 125 GKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASF-TKSLMLTV 183
Query: 415 AGRFNLVFTKS 425
+ +
Sbjct: 184 KQFGHTMLDIK 194
Score = 36.4 bits (84), Expect = 0.021
Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 344 YYCFTKFACQLNEL--EEGVAPTDSR--LRPDQRLLE 376
+Y + + + E P +SR ++
Sbjct: 293 FYDAARIPAEHLNVKPLEEQHPLESRKAWYDVAGAIK 329
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 134 bits (338), Expect = 4e-38
Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 17 EMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQ--TEDSC 74
E G L KWTNY+ G+Q RW VL N LSYY+++ E + CRG+I L A+I D C
Sbjct: 2 ERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHDFDEC 61
Query: 75 TFIISNGVQTFHIKASNEVERQRWVTALELAKS 107
F IS ++++A + RQ+W+ A+E K+
Sbjct: 62 RFDISVNDSVWYLRAQDPDHRQQWIDAIEQHKT 94
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 127 bits (321), Expect = 1e-35
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 18 MKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQ--TEDSCT 75
M+G L+KWTNYL G+Q RWFVL NG+LSYY +Q ++ +G+I + I+ + D+
Sbjct: 1 MEGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKVHSADNTR 60
Query: 76 F-IISNGVQTFHIKASNEVERQRWVTALELAKSKARQ 111
+I G Q F++KA N ERQRW+ AL +K+
Sbjct: 61 MELIIPGEQHFYMKAVNAAERQRWLVALGSSKASLTD 97
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 125 bits (314), Expect = 2e-34
Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 11 ASHSDAEMKGWLFKWTNYLKGYQKRWFVLSN--GLLSYYRNQAEMSHTCRGTISLRGAII 68
+ S + G+L K+TN + G+Q R+FVL+N GLL Y+ N+ + RGT+ L GA+I
Sbjct: 3 SGSSGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVI 62
Query: 69 QT--EDSCTF-IISNGVQTFHIKASNEVERQRWVTALELAKSKARQ 111
EDS TF + + + + ++A++ ERQ WV+ L++ +
Sbjct: 63 SPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTE 108
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 105 bits (263), Expect = 3e-27
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 15/112 (13%)
Query: 17 EMKGWLFKWTNYLKGYQKRWFVL-SNGLLSYYRNQAEMSHTCRGTISLRGAIIQTEDSCT 75
GWL++ ++ L+ +++ WF L +G L YY ++ R I I+ C
Sbjct: 9 VRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQ 68
Query: 76 --------------FIISNGVQTFHIKASNEVERQRWVTALELAKSKARQHA 113
+ H+ A + W TAL A S
Sbjct: 69 DVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPAPAG 120
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 103 bits (257), Expect = 3e-26
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 17 EMKGWL--FKWT-NYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQTEDS 73
E+K L F+ LKGY++ W V LSYY++Q E ++L+G + + +
Sbjct: 10 ELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDVN 69
Query: 74 CT---------FIISNGVQTFHIKASNEVERQRWVTALELAKSK 108
+ G+ +++ +E + RW+ LA
Sbjct: 70 VSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLASKG 113
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 92.9 bits (231), Expect = 8e-23
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 9/115 (7%)
Query: 14 SDAEMKGWLFKW--TNYLKGYQKRWFVLSNG--LLSYYRNQAEMSHTCRGTISLRGAII- 68
S ++ G+L K+ ++G++ RWF L Y R +I L A+
Sbjct: 6 SGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRT--AQDANPLDSIDLSSAVFD 63
Query: 69 --QTEDSCTFIISNGVQTFHIKASNEVERQRWVTALELAKSKARQHALVAAFSTS 121
+ F I + +KA+ + W+ L++ + + + +S
Sbjct: 64 CKADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWEFHNSPPAPSGPSS 118
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 91.8 bits (228), Expect = 1e-22
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 13 HSDAEMKGWLFKWT-NYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQ-- 69
+E KG+L K + K +Q+R + NG+L+ + ++L ++
Sbjct: 7 GYGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSNRQ---PAKLNLLTCQVKPN 63
Query: 70 TEDSCTFIISNGVQTFHIKASNEVERQRWVTALELAKSKARQHA 113
ED +F + + +T+H +A +E + W++ L +K +A A
Sbjct: 64 AEDKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSKEEALTMA 107
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 89.4 bits (222), Expect = 1e-21
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 14 SDAEMKGWLFKW-TNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGA-IIQTE 71
S GWL K + +QKRW +SYY N+ EM +G I L ++ +
Sbjct: 6 SGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEM--YSKGIIPLSAISTVRVQ 63
Query: 72 DSCTFIISNGVQTFHIKASNEVERQRWVTALELAKSKARQHALVAAFSTSA 122
F + +TF + E ER W++ L A + A S+
Sbjct: 64 GDNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKSQSLTSQSQASGPSS 114
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 86.7 bits (215), Expect = 1e-20
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 7 TDIKASHSDAEMKGWLFKWT-NYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRG 65
+ + ++ GWLFK + +K + KRWFVL + L YY+++ E + G+I L
Sbjct: 2 SSGSSGNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEE--SILGSIPLLS 59
Query: 66 AIIQTEDS-------CTF-IISNGVQTFHIKASNEVERQRWVTALELA 105
+ TF GV+T+ A + E++ W+ A+ A
Sbjct: 60 FRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 107
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 86.3 bits (214), Expect = 1e-20
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 18 MKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAII------QTE 71
+G++ K + K + +RWFVL ++SYY ++ +G I L +
Sbjct: 10 KQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKD--KKGDILLDENCCVESLPDKDG 67
Query: 72 DSCTFIISNGVQTFHIKASNEVERQRWVTALELAKSKARQHA 113
C F++ +TF I AS++ ++Q W+ A+ + +
Sbjct: 68 KKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIHLLKLGS 109
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 84.0 bits (208), Expect = 1e-19
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 7/105 (6%)
Query: 14 SDAEMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAII----- 68
S +G+L K +K ++ RWF L L Y+++Q + L
Sbjct: 16 SLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSP--EPIRILDLTECSAVQFDY 73
Query: 69 QTEDSCTFIISNGVQTFHIKASNEVERQRWVTALELAKSKARQHA 113
E F + +TF++ A VE W+ L S+ R+
Sbjct: 74 SQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQL 118
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 84.8 bits (209), Expect = 2e-19
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 17 EMKGWL---FKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQTEDS 73
E+ ++ LKGY++ W + +S Y+++ E S T ++LRG + + +
Sbjct: 48 ELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVN 107
Query: 74 CT---FII------SNGVQTFHIKASNEVERQRWVTALELAKSKARQHA 113
+ F I + G+ ++ NE + W+ A LA SK + A
Sbjct: 108 ISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACRLA-SKGKTMA 155
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 82.5 bits (204), Expect = 3e-19
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 16 AEMKGWLFKWT-NYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQTEDS- 73
++GWL K + L+ +++RWFVLS L YY++ E + G++ L I+ +
Sbjct: 11 VHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREE--SVLGSVLLPSYNIRPDGPG 68
Query: 74 -------CTFIISNGVQTFHIKASNEVERQRWVTALELA 105
G++T+ + A + + W+ AL A
Sbjct: 69 APRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA 107
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 80.1 bits (198), Expect = 2e-18
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 11 ASHSDAEMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQT 70
+ S + M G+L++ K ++ WFV+ N +L Y + + L G +
Sbjct: 3 SGSSGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASED--VAALESQPLLGFTVTL 60
Query: 71 EDS-----CTF-IISNGVQTFHIKASNEVERQRWVTALELA 105
F ++ G+ + KA + QRW+ A +
Sbjct: 61 VKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEG 101
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 80.3 bits (198), Expect = 2e-18
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 19/105 (18%)
Query: 20 GWLFKWTNYLKGYQKRWFVL-SNGLLSYYRNQAEMSHTCRGTISLRGAIIQTE------- 71
GWL + + LK ++K WF L S+G L YY +Q + + I
Sbjct: 9 GWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTR--QNIEDKVHMPMDCINIRTGQECRD 66
Query: 72 ---------DSCTFIISNGVQTFHIKASNEVERQRWVTALELAKS 107
D I+ +T + A + + W L+ +++
Sbjct: 67 TQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRT 111
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 79.9 bits (197), Expect = 2e-18
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 11 ASHSDAEMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQT 70
+ S E +L N ++ RW + + L +Y+++ S + +SL G +
Sbjct: 3 SGSSGLETSSYLNVLVN--SQWKSRWCSVRDNHLHFYQDRNR-SKVAQQPLSLVGCEVVP 59
Query: 71 EDSC----TF-IISNGVQTFHIKASNEVERQRWVTALELAKSKA 109
+ S +F I+ G + ++A + E W+ L
Sbjct: 60 DPSPDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSESGSG 103
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 81.1 bits (200), Expect = 2e-18
Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 15/114 (13%)
Query: 14 SDAEMKGWLFK----WTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQ 69
G+L K + +QKRW LS + YY + + +G ++ G ++
Sbjct: 15 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQ--KGEFAIDGYDVR 72
Query: 70 TEDS---------CTFIISNGVQTFHIKASNEVERQRWVTALELAKSKARQHAL 114
++ C I + + + A++ + + WV L+ +
Sbjct: 73 MNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDLGSDVI 126
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 79.8 bits (197), Expect = 3e-18
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 14 SDAEMKGWLFKWT-NYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQTED 72
+ GWLFK + +K + KRWFVL + L YY+++ E + G+I L +
Sbjct: 20 APVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEE--SILGSIPLLSFRVAAVQ 77
Query: 73 S-------CTF-IISNGVQTFHIKASNEVERQRWVTALELA 105
TF GV+T+ A + E++ W+ A+ A
Sbjct: 78 PSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 118
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 79.0 bits (195), Expect = 6e-18
Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 18 MKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAII--------Q 69
G+ K +K +++R+F L + Y++++ E I L+
Sbjct: 16 KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEK--EPLRVIPLKEVHKVQECKQSDI 73
Query: 70 TEDSCTFIISNGVQTFHIKASNEVERQRWVTALELAKSKARQHA 113
F I +TF+++A + E W+ A+ A R
Sbjct: 74 MMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPG 117
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 77.9 bits (192), Expect = 1e-17
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 16/109 (14%)
Query: 14 SDAEMKGWLFKWTNYLKGYQKRWFVL--SNGLLSYYRNQAEMSHTCRGTISLR------- 64
S +G L+K ++K ++ RWFVL + L YY ++ + C+G I L
Sbjct: 6 SGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTE--CKGVIDLAEVEAVAP 63
Query: 65 -----GAIIQTEDSCTFIISNGVQTFHIKASNEVERQRWVTALELAKSK 108
GA ++ F + + ++ A + Q+WV ++ S
Sbjct: 64 GTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLSS 112
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 77.1 bits (190), Expect = 2e-17
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 20 GWLFK----WTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQTEDS-- 73
G+L K + + +QKRW V+S GL YY N E S +GT ++G ++
Sbjct: 7 GYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYAN--EKSKQPKGTFLIKGYSVRMAPHLR 64
Query: 74 -------CTFIISNGVQTFHIKASNEVERQRWVTALELA 105
C + S +T+ A++ E + WV +
Sbjct: 65 RDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFL 103
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 77.0 bits (190), Expect = 2e-17
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 20 GWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQTEDS------ 73
G+L K + ++ W VL + +Y+ +++ S +G I L+G+ + +
Sbjct: 9 GYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNS--PKGMIPLKGSTLTSPCQDFGKRM 66
Query: 74 CTF-IISNGVQTFHIKASNEVERQRWVTALELA 105
F I + Q +A+ ER WV + A
Sbjct: 67 FVFKITTTKQQDHFFQAAFLEERDAWVRDINKA 99
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 80.0 bits (197), Expect = 3e-17
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 12 SHSDAEMKGWLFK-----WTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGA 66
S +A +GWL T + ++KRWFVL L Y+ N +E +GT+ +R A
Sbjct: 54 SKQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEE--KLKGTVEVRSA 111
Query: 67 IIQTEDS---CTFIISNGVQTFHIKASNEVERQRWVTALELAKSKARQH 112
+++ I +TFH+ A + + +W + L S Q
Sbjct: 112 KEIIDNTNKENGIDIIMADRTFHLIAESPEDASQWFSVLSQVHSSTDQE 160
Score = 31.1 bits (70), Expect = 0.72
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 11/97 (11%)
Query: 14 SDAEMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCR----GTISLRGAIIQ 69
S + W + + + + QA + G I A
Sbjct: 139 SPEDASQWFSVLSQVHSSTDQE-------IREMHDEQANPQNAVGTLDVGLIDSVCASDS 191
Query: 70 TEDSCTFIISNGVQTFHIKASNEVERQRWVTALELAK 106
+ +F+I + H A E W+T L+ +K
Sbjct: 192 PDRPNSFVIITANRVLHCNADTPEEMHHWITLLQRSK 228
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 76.3 bits (188), Expect = 5e-17
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 11 ASHSDAEMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQT 70
+ S GWL K + +K +Q+R+FVL L YY+++ + +G + L G I+
Sbjct: 3 SGSSGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEED--TKPQGCMYLPGCTIKE 60
Query: 71 EDS-------CTFII--------SNGVQTFHIKASNEVERQRWVTALELA 105
+ F I G ++ + AS++ E + WV L
Sbjct: 61 IATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRV 110
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 75.6 bits (186), Expect = 1e-16
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 13 HSDAEMKGWLFKWT-NYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQTE 71
++ +GWL+K +K ++KRWFVLS+ L YYR++ E G+I L I
Sbjct: 18 NAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGI--LGSILLPSFQIALL 75
Query: 72 DS-------CTF-IISNGVQTFHIKASNEVERQRWVTALELA 105
S F ++T++ E + W+ A+ A
Sbjct: 76 TSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDA 117
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 75.6 bits (186), Expect = 1e-16
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 15/105 (14%)
Query: 14 SDAEMKGWLFKWTNYLKGYQKRWFVLSN--GLLSYYRNQAEMSHTCRGTISLRGAIIQTE 71
+G L K + K ++ R F+L L YY G I LRG ++ +
Sbjct: 16 GVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAED--PLGAIHLRGCVVTSV 73
Query: 72 DSC----------TF-IISNGVQTFHIKASNEVERQRWVTALELA 105
+S F II+ + ++A+ ER W+ A+++A
Sbjct: 74 ESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 118
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 77.9 bits (191), Expect = 1e-16
Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 14 SDAEMKGWLFK----WTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQ 69
G+L K + +QKRW LS + YY + + +G ++ G ++
Sbjct: 104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGS--DKDKQQKGEFAIDGYDVR 161
Query: 70 TEDS---------CTFIISNGVQTFHIKASNEVERQRWVTALELA 105
++ C I + + + A++ + + WV L+
Sbjct: 162 MNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI 206
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 75.0 bits (184), Expect = 2e-16
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 11/120 (9%)
Query: 14 SDAEMKGWLFKW-TNYLKGYQKRWFVL--SNGLLSYYRNQAEMSHTCRGTISLRGAIIQT 70
S + G+L+ N K ++KR+FVL + + E + + L G +
Sbjct: 6 SGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDY 65
Query: 71 EDSCT--------FIISNGVQTFHIKASNEVERQRWVTALELAKSKARQHALVAAFSTSA 122
D F T + +E +R WV A+ A ++ + S+
Sbjct: 66 TDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPTQSGPSS 125
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 74.1 bits (182), Expect = 2e-16
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 18 MKGWLFK----WTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQ---- 69
+G L + ++ + VLSNG+L Y + ++++ G
Sbjct: 2 KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPD--RTDVIPLLSVNMGGEQCGGCRR 59
Query: 70 ---TEDSCTF-IISNGVQTFHIKASNEVERQRWVTALELAKSKA 109
T+ F +I + + A +E E W+ L A SK
Sbjct: 60 ANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKG 103
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 72.8 bits (179), Expect = 6e-16
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 20 GWLFKWTNYLKGYQKRWFVLSN--GLLSYYRNQAEMSHTCRGTISLRGAIIQTEDSC--- 74
G L K + K ++ R F+L L YY G I LRG ++ + +S
Sbjct: 11 GCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAED--PLGAIHLRGCVVTSVESNSNG 68
Query: 75 -------TF-IISNGVQTFHIKASNEVERQRWVTALELA 105
F II+ + ++A+ ER W+ A+++A
Sbjct: 69 RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 107
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 73.0 bits (178), Expect = 9e-16
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 29/115 (25%)
Query: 18 MKGWLFKWTN--YLKGYQKRWFVL-SNGLLSYYRNQAE-MSHTCRGTISLRGAIIQT--- 70
+ +L K + K ++K++ L SNG L Y+ + + + T + L ++
Sbjct: 6 KQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGK 65
Query: 71 ----------------------EDSCTFIISNGVQTFHIKASNEVERQRWVTALE 103
E+ I+S+ QT+H +A++ ER WV A+E
Sbjct: 66 RPPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIE 120
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 73.0 bits (179), Expect = 1e-15
Identities = 22/104 (21%), Positives = 48/104 (46%), Gaps = 15/104 (14%)
Query: 15 DAEMKGWLFKWTNYLKGYQKRWFVL-SNGLLSYYRNQAEMSHTCRGTISLRGAIIQT--- 70
+G+L K + K ++ R FVL + +Y + ++ + G SLRG+++
Sbjct: 17 TVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALED 76
Query: 71 -----------EDSCTFIISNGVQTFHIKASNEVERQRWVTALE 103
+ + +I+ ++I+AS++ ER W+ A++
Sbjct: 77 NGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIK 120
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 73.2 bits (179), Expect = 1e-15
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 8/100 (8%)
Query: 9 IKASHSDAEMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAII 68
+K + +G+L + + Y+ W L L +Y ++ + + + +
Sbjct: 11 LKITALPLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIY--VDKLDIVDLTC 68
Query: 69 QTED------SCTFIISNGVQTFHIKASNEVERQRWVTAL 102
TE F + + +K N + W +
Sbjct: 69 LTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFI 108
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 72.3 bits (177), Expect = 1e-15
Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 12 SHSDAE--MKGWLFKWTNYLKGYQKRWFVL-SNGLLSYYRNQAEMSHTC---RGTISLRG 65
S SD +GWL K Y+K ++ R+F+L ++G Y+ + + S+
Sbjct: 2 SMSDVAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQ 61
Query: 66 AIIQTED---------SCTFIISNGVQTFHIKASNEVERQRWVTALELAKSKARQ 111
+ + C + +TFH ER+ W TA++ ++
Sbjct: 62 CQLMKTERPRPNTFIIRCLQWTTVIERTFH--VETPEEREEWTTAIQTVADGLKK 114
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 70.8 bits (173), Expect = 9e-15
Identities = 22/117 (18%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 14 SDAEMKGWLFKW------TNYLKGYQKRWFVLS-----NGLLSYYRNQAEMSHTCRGTIS 62
GWL+K + ++ +++R+F L + L++Y+++ ++S +G+I
Sbjct: 16 GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDE-KISKEPKGSIF 74
Query: 63 LRGAIIQTED----SCTFIIS-NGVQTFHIKASNEVERQRWVTALELAKSKARQHAL 114
L + ++ F + ++ + A +EVE + W+T L + A+
Sbjct: 75 LDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAM 131
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 69.6 bits (170), Expect = 1e-14
Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 28/123 (22%)
Query: 12 SHSDAEMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQ-- 69
+ + + +GWL K +K +++RWF+L++ L Y+ + RG I L I+
Sbjct: 1 TFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKE--PRGIIPLENLSIREV 58
Query: 70 ------------------------TEDSCTFIISNGVQTFHIKASNEVERQRWVTALELA 105
++ ++ + I A + E++ W+ +++ +
Sbjct: 59 LDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKAS 118
Query: 106 KSK 108
S+
Sbjct: 119 ISR 121
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 66.7 bits (162), Expect = 4e-13
Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 17/116 (14%)
Query: 13 HSDAEMKGWLFKWTN-----YLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGA- 66
+ + ++ L K + Y++R FVL+ +L+YY + +G I +
Sbjct: 12 NFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGR-AEKKYRKGFIDVSKIK 70
Query: 67 ----------IIQTEDSCTFIISNGVQTFHIKASNEVERQRWVTALELAKSKARQH 112
+I ++ F + + T +I A + R WV L+
Sbjct: 71 CVEIVKNDDGVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIKNNNNI 126
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 65.5 bits (159), Expect = 5e-13
Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 32/131 (24%)
Query: 13 HSDAEMKGWL--FKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTC-RGTISLRGAIIQ 69
+S E +G+L F+ + + +RW VLS +SY+ + G I+L +
Sbjct: 2 NSSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSR 61
Query: 70 -----TEDSC----TFII--------------------SNGVQTFHIKASNEVERQRWVT 100
+ C TF + + V + A + ER W+
Sbjct: 62 QIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQ 121
Query: 101 ALELAKSKARQ 111
L R
Sbjct: 122 KLNQVLVDIRL 132
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 64.2 bits (156), Expect = 1e-12
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 18 MKGWLFKWTN-YLKGYQKRWFVLSNG---LLSYYRNQAEMSHTCRGTISLRGAIIQTEDS 73
+ G+L N + +R+F+L LL Y N ++ SL+ I
Sbjct: 17 ICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSI 76
Query: 74 CT----------FIISNGVQTFHIKASNEVERQRWVTALELA 105
T F+I+ Q + ++A+++ + + WV AL A
Sbjct: 77 ATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQA 118
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 62.4 bits (151), Expect = 4e-12
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 31/123 (25%)
Query: 14 SDAEMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQTEDS 73
S M WL K LK + K W VL G+L Y+ + + GT+ L I S
Sbjct: 6 SGIVMADWL-KIRGTLKSWTKLWCVLKPGVLLIYKT--QKNGQWVGTVLLNACEIIERPS 62
Query: 74 --------------------------CTFIISNGVQTFH--IKASNEVERQRWVTALELA 105
I+ + + + I+A++E + + W+ ALELA
Sbjct: 63 KKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELA 122
Query: 106 KSK 108
Sbjct: 123 LKS 125
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 60.4 bits (146), Expect = 2e-11
Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 22/113 (19%)
Query: 13 HSDAEMK-GWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTC-RGTISLRGAIIQT 70
H E+K G+L + + +LK Y K ++VL+ L ++ +++L +
Sbjct: 2 HPFTEIKSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTE 61
Query: 71 EDSC-------------TFIIS-------NGVQTFHIKASNEVERQRWVTALE 103
F++ + KA + W L+
Sbjct: 62 HSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLK 114
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 59.8 bits (144), Expect = 8e-11
Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 17/109 (15%)
Query: 14 SDAEMKGWLF----------KWTNYLKGYQKRWFVLSNGLLSYYRNQAE--MSHTCRGTI 61
SDA +GWL + ++ +++ + VL L Y+++ E I
Sbjct: 1 SDAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPI 60
Query: 62 SLRGAIIQ-----TEDSCTFIISNGVQTFHIKASNEVERQRWVTALELA 105
S+ +I T+ F ++ +A + + W+ ++ +
Sbjct: 61 SVNACLIDISYSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQES 109
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 62.4 bits (151), Expect = 1e-10
Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 20/138 (14%)
Query: 2 SALNTTDIKASHSDAEMKGWLFKWT-NYLKGYQKRWFVLSNGLLSYYRNQAE-------- 52
A + + + +G++ K +G++KRWF + + L Y+++ +
Sbjct: 255 GASDADLVPKLSRNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVF 314
Query: 53 ---MSHTCRGTISLRGAIIQTEDSCTFIISNGVQTFHIKASNEVERQRWVTALELAKSKA 109
+ I + F E +++ WV A
Sbjct: 315 IGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAF------- 367
Query: 110 RQHALVAAFSTSAYSTTA 127
Q A+ Y+ A
Sbjct: 368 -QKAVDRPMLPQEYAVEA 384
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 112
Score = 56.1 bits (135), Expect = 4e-10
Identities = 16/107 (14%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 11 ASHSDAEMKGWLFKWTNYLKGYQKRWFVLSNG---LLSYYRNQAEMSHTCRGTISLRGAI 67
+ S + + G L + + + + W + +L + TI L
Sbjct: 3 SGSSGSLLCGPLRLSESG-ETWSEVWAAIPMSDPQVLHLQGGSQDGRL--PRTIPLPSCK 59
Query: 68 IQTEDSC-------TFIISNGVQTFHIKASNEVERQRWVTALELAKS 107
+ D + + Q++++ AS+ +Q+W+ L A
Sbjct: 60 LSVPDPEERLDSGHVWKLQWAKQSWYLSASSAELQQQWLETLSTAAH 106
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 59.1 bits (142), Expect = 6e-10
Identities = 33/181 (18%), Positives = 58/181 (32%), Gaps = 20/181 (11%)
Query: 11 ASHSDAEMKGWLFKWTNYLKGYQKRWFVLSNG-------LLSYYRNQAEMSHTC---RGT 60
SD G+L K K KR+FVL L YY N+ + H + +
Sbjct: 5 DGFSDVRKVGYLRK----PKSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRS 60
Query: 61 ISLRGAII-----QTEDSCTFIISNGVQTFHIKASNEVERQRWVTALELAKSKARQHALV 115
I L +++ + + F I A +E E+ W AL ++A+ H
Sbjct: 61 IPLESCFNINKRADSKNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRAKGHHDG 120
Query: 116 AAFSTSAYSTTAVRTGKPFNPLLGE-TYECDRTADAGWKAFSEQVSHHPPIAAQYVEGKA 174
AA + + + +Y A + + + + + G
Sbjct: 121 AAALGAGGGGGSCSGSSGLGEAGEDLSYGDVPPGPAFKEVWQVILKPKGLGQTKNLIGIY 180
Query: 175 W 175
Sbjct: 181 R 181
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 59.6 bits (143), Expect = 1e-09
Identities = 9/110 (8%), Positives = 32/110 (29%), Gaps = 12/110 (10%)
Query: 12 SHSDAEMKGWLFKWTNY---LKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAII 68
+ + G+L + ++++ G L + + +
Sbjct: 274 NRNLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGDVAGG---LAMDIDNCSV 330
Query: 69 QTEDS----CTF--IISNGVQTFHIKASNEVERQRWVTALELAKSKARQH 112
D F +G ++ ++A ++ + + W+ + +
Sbjct: 331 MAVDCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQIYLS 380
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 54.6 bits (130), Expect = 5e-09
Identities = 20/157 (12%), Positives = 38/157 (24%), Gaps = 45/157 (28%)
Query: 14 SDAEMKGWLFK-----WTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTC--RGTISLRGA 66
+ ++ K ++K F+L+ LSYY E +G+I +
Sbjct: 1 AAVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKI 60
Query: 67 -------------------------------IIQTEDSCTFIISNGVQTFHIKASNEVER 95
I F + ++ + E R
Sbjct: 61 TCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELR 120
Query: 96 QRWVTALELAKSKARQHALVAAFSTSAYSTTAVRTGK 132
+RW+ L+ Y G+
Sbjct: 121 KRWIHQLKNVIRYNSDLV-------QKYHPCFWIDGQ 150
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 51.6 bits (123), Expect = 3e-08
Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 20/115 (17%)
Query: 17 EMKGWLFKWT-------NYLKGYQKRWFVLSNGLLSYYRNQAEMS-------HTCRGTIS 62
M+G L + T L + + W VLS L YY ++ T +S
Sbjct: 2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVS 61
Query: 63 LRGAIIQTEDSC----TFIISNGVQ--TFHIKASNEVERQRWVTALELAKSKARQ 111
+ G ++Q D F ++N + + + + W L+ A +R
Sbjct: 62 IVGWMVQLPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSSRP 116
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 3e-08
Identities = 74/563 (13%), Positives = 147/563 (26%), Gaps = 198/563 (35%)
Query: 51 AEMSHTCRGTIS-LRGAIIQ------TEDSCTFIISNGVQTFHIKASNEVERQRWVTALE 103
E + + +S A + +D I+S I + + V +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL--FW 69
Query: 104 LAKSKARQHALVAAFSTSAYSTTAVRTGKPFNPLLGETYECDRTADAGW--KAFSEQVSH 161
SK Q +V F +L Y + +
Sbjct: 70 TLLSK--QEEMVQKF---------------VEEVLRINY--------KFLMSPIKTEQRQ 104
Query: 162 HPPIAAQYVEGKAWKAWQDLAVHSKF---RGKYIQVTPAGRFNLVFTKSNQHYTWNRVQS 218
+ Y+E + + + D V +K+ R + L + +
Sbjct: 105 PSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPYLKLRQALLEL---RPAK--------- 151
Query: 219 TVHNVIVGNLWVDQHG-----ESDVINVTTGSTCR----LTFYPYSYFSRQTQRRVLPW- 268
NV++ G ++ C + F W
Sbjct: 152 ---NVLI-------DGVLGSGKT----WVALDVCLSYKVQCKMDFKIF----------WL 187
Query: 269 ---KPNTPRRSIIPEKPPGSMQ--IWSILKNSIGKDLSTIPMPLNFSEPLSMLQRLTEDF 323
N+P + +Q ++ I N + + + L + L+RL +
Sbjct: 188 NLKNCNSPETVLEM------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 324 EYAH---VLDEAAATDDVFRAPQYYCFTKFACQ-----------------------LNEL 357
Y + VL +V A + F +C+ L+
Sbjct: 242 PYENCLLVL------LNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 358 EEGVAPTDSR--------LRPDQ-RLLEVSHHPP----IAAQYVEGKA-WKAWQDLAVHS 403
+ P + + RP ++ +P IA +G A W W+ +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV---- 350
Query: 404 KFRGKYIQVTPAGRFNLVFTKSSMAVL--HEVLGMYHS-GVFKDGQLVSNKSTNKQDLKT 460
++T +SS+ VL E M+ VF +
Sbjct: 351 ----NCDKLTTI-------IESSLNVLEPAEYRKMFDRLSVFPPSAHIP--------TIL 391
Query: 461 IRGDQITWIDGRETYCSNIGRLISEVDAII--MRANRMVN-NGRMGDFVING-----RTK 512
+ + W D + S+V ++ + +V + I + K
Sbjct: 392 L---SLIWFDVIK----------SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 513 MLKEVYGHARVGHEKLGRLSRYQ 535
+ E H + + Y
Sbjct: 439 LENEYALHRSI-------VDHYN 454
Score = 31.7 bits (71), Expect = 0.81
Identities = 26/187 (13%), Positives = 50/187 (26%), Gaps = 51/187 (27%)
Query: 156 SEQVSHHPPIAAQYVEGKAWKAWQDLAVHSKFRGKYI---------QVTPAGRFNLVFTK 206
+ + H I Y K + + DL +Y + R L F
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSD-DLIPPYLD--QYFYSHIGHHLKNIEHPERMTL-FRM 495
Query: 207 SNQHYTWNRVQSTVHNVIVGNLWVDQHGESDVINVTTGSTCRLTFYPYSYFSRQTQRRVL 266
+ + ++ + + W + + +L FY
Sbjct: 496 VFLDFRF--LEQKIRH--DSTAWNASGSILNTLQ-------QLKFY-------------- 530
Query: 267 PWKPNTPRRSIIPEKPPGSMQIWSILKNSIGKDLSTIPMPLNFSEPLSMLQRLTEDFEYA 326
+ I P + +IL L I L S+ +L+ + E
Sbjct: 531 -------KPYICDNDPKYERLVNAILDF-----LPKIEENLICSKYTDLLR-IALMAEDE 577
Query: 327 HVLDEAA 333
+ +EA
Sbjct: 578 AIFEEAH 584
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 50.3 bits (120), Expect = 7e-08
Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 21/115 (18%)
Query: 15 DAEMKGWLFKWTNYLKG------YQKRWFVLSNGLLSYYRNQAEMSHTC---------RG 59
+ E G L G + W VL+ L +YR + +
Sbjct: 11 EVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPES 70
Query: 60 TISLRGAIIQTEDSCT-----FIISNGVQT-FHIKASNEVERQRWVTALELAKSK 108
++ LRGA + + I F +++ +E E + W AL +
Sbjct: 71 SVDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIER 125
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 52.7 bits (125), Expect = 8e-08
Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 22/117 (18%)
Query: 11 ASHSDAEMKGWLFKWTNYL------------KGYQKRWFVLSNGLLSYYRNQ----AEMS 54
GWLF + +++ W L L +Y E +
Sbjct: 6 KEQGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQN 65
Query: 55 HTCRGTISLRGAIIQ-----TEDSCTF-IISNGVQTFHIKASNEVERQRWVTALELA 105
R + +I+Q + F + ++ + +A+++ + + WVTA+ A
Sbjct: 66 SAPRCALFAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSA 122
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 52.6 bits (125), Expect = 9e-08
Identities = 22/171 (12%), Positives = 51/171 (29%), Gaps = 18/171 (10%)
Query: 30 KGYQKRWFVLSNGLLSYYRNQAE----MSHTCRGTISLRGAIIQTEDS-----CTFIISN 80
+ ++ W L L +Y + + + + +I+Q F +SN
Sbjct: 37 RKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHPKKDFVFCLSN 96
Query: 81 -GVQTFHIKASNEVERQRWVTALELAKSKARQHALVAAFSTSAYSTTAVRTGKPFNPLLG 139
F + +++ E + W+TA+ A + A + + L
Sbjct: 97 SLGDAFLFQTTSQTELENWITAIHSACAAAVARHHHKEDTLRLLKSE--------IKKLE 148
Query: 140 ETYECDRTADAGWKAFSEQVSHHPPIAAQYVEGKAWKAWQDLAVHSKFRGK 190
+ + D + V+ + W+ + FR +
Sbjct: 149 QKIDMDEKMKKMGEMQLSSVTDSKKKKTILDQIFVWEQNLEQFQMDLFRFR 199
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor,
HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET:
UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A*
3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Length = 247
Score = 51.7 bits (123), Expect = 1e-07
Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 428 AVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVD 487
+ EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C IG L+S +D
Sbjct: 42 QIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMD 98
Query: 488 AIIMRANRMVNNGRMGDFVINGRTKMLKEVY 518
+I N ++G + INGRTK + Y
Sbjct: 99 DLIRHCNG-----KLGSYKINGRTKAMVACY 124
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 49.6 bits (118), Expect = 2e-07
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 30 KGYQKRWFVLSNGLLSYYRNQAEMSH-TCRGTISLRG-AIIQTEDS----CTF-IISNGV 82
+ ++R+F+L + +L MS +G I + G + + ++ C F I + V
Sbjct: 42 EEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTV 101
Query: 83 QTFHIKASNEVERQRWVTALE 103
+ + +N + Q W+ L
Sbjct: 102 ERIVVHCNNNQDFQEWMEQLN 122
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 47.3 bits (112), Expect = 8e-07
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 18/103 (17%)
Query: 19 KGWLFKWT-NYLKGYQKR-WFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQTEDSC-- 74
KGWL +KG K WFVL+ LS+Y++ E + +S+ ++ +
Sbjct: 15 KGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEE--KEKKYMLSVDNLKLRDVEKGFM 72
Query: 75 ----TFIISNG--------VQTFHIKASNEVERQRWVTALELA 105
F + N + + + E W + A
Sbjct: 73 SSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA 115
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 46.5 bits (110), Expect = 1e-06
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 18/117 (15%)
Query: 11 ASHSDAEMKGWLFKWTNYLKGYQK--------RWFVLSNGLLSYYRNQ--AEMSHTCRGT 60
+ S +M+G L + +K + VL G L +Y++ A G
Sbjct: 3 SGSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGE 62
Query: 61 --ISLRGAIIQTEDSCT-----F-IISNGVQTFHIKASNEVERQRWVTALELAKSKA 109
+SL A F + + + +A +E E W+ + A +
Sbjct: 63 VPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASG 119
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 46.1 bits (109), Expect = 2e-06
Identities = 20/115 (17%), Positives = 46/115 (40%), Gaps = 20/115 (17%)
Query: 11 ASHSDAEMKGWLFK---WTNYLK-----GYQKRWFVLSNGLLSYYRNQ------AEMSHT 56
+ + +G++ + W + K + K + G +S+Y++Q E++
Sbjct: 3 GTGAGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFR 62
Query: 57 CRGTISLRGAIIQTEDSCT-----F-IISNGVQTFHIKASNEVERQRWVTALELA 105
+ L+ A I+ T + F ++A ++ E +WVT+L+
Sbjct: 63 GEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQ 117
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 48.3 bits (114), Expect = 2e-06
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 17/107 (15%)
Query: 17 EMKGWLFKWTNYLKGYQKRWFVL-SNGLLSYYRNQAEMSHTCRGTISLRGAIIQTEDSC- 74
E++G+L K ++K + L +GL + + + L + I + +
Sbjct: 133 EIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDSNIFSLIAGR 192
Query: 75 ---------TFII------SNGVQTFHIKASNEVERQRWVTALELAK 106
I + + + A +E R W+TA L K
Sbjct: 193 KQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLK 239
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 44.2 bits (104), Expect = 7e-06
Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Query: 18 MKGWLFK---WTNYLKGYQKR-----WFVLSNGLLSYYRNQAE----MSHTCRGTISLRG 65
M+G+L + W + K R + V++N + +Y++ + + +SL+
Sbjct: 1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKE 60
Query: 66 AIIQTEDSCT-----F-IISNGVQTFHIKASNEVERQRWVTALELA 105
AI + F + + + +A ++ E W+ A+ A
Sbjct: 61 AICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 43.3 bits (102), Expect = 2e-05
Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 24/116 (20%)
Query: 17 EMKGWLFKWTNYLKG-------YQKRWFVLSNGLLSYYRNQAEMSHTC----------RG 59
+ G L + KG + W VL G+L+++++ +
Sbjct: 9 DKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEY 68
Query: 60 TISLRGAIIQTEDS------CTF-IISNGVQTFHIKASNEVERQRWVTALELAKSK 108
T+ LRGA + + S + I+ +E W A+ +
Sbjct: 69 TVELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQE 124
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 44.7 bits (106), Expect = 5e-05
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 17/108 (15%)
Query: 20 GWLFKWTNYLKGYQKRWFVL-SNGLLSYYRNQAEMSHTCR---GTISLRG-AIIQTED-- 72
GWL K Y+K ++ R+F+L ++G Y+ + + S+ +++TE
Sbjct: 10 GWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPR 69
Query: 73 SCTFIISNGVQ-------TFHIKASNEVERQRWVTALELAKSKARQHA 113
TFII +Q TFH++ ER+ W TA++ ++ A
Sbjct: 70 PNTFIIR-CLQWTTVIERTFHVE--TPEEREEWTTAIQTVADGLKKQA 114
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 43.8 bits (103), Expect = 1e-04
Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 6/121 (4%)
Query: 5 NTTDIKASHSDAEMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLR 64
D+ + +G L K T K + R L N +L Y Q + + + T+++
Sbjct: 233 GQGDLLQPGREFLKEGTLMKVTG--KNRRPRHLFLMNDVLLYTYPQKDGKYRLKNTLAVA 290
Query: 65 GAIIQT----EDSCTFIISNGVQTFHIKASNEVERQRWVTALELAKSKARQHALVAAFST 120
+ + I + AS+ ER W L A + + +AAF
Sbjct: 291 NMKVSRPVMEKVPYALKIETSESCLMLSASSCAERDEWYGCLSRALPEDYKAQALAAFHH 350
Query: 121 S 121
S
Sbjct: 351 S 351
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 127
Score = 39.3 bits (91), Expect = 4e-04
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 18/103 (17%)
Query: 18 MKGWLFKWTN--YLKGYQKRWFVLSNGL------LSYYRNQAE--MSHTCRGTISLR--- 64
+G+L+ + K +++ L G L + R I L
Sbjct: 14 KQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCL 73
Query: 65 -----GAIIQTEDSCTFIISNGVQTFHIKASNEVERQRWVTAL 102
G + + + ++ A+ ER WV A+
Sbjct: 74 RVAEAGGEASSPRDTSAFFLETKERLYLLAAPAAERGDWVQAI 116
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 5e-04
Identities = 38/259 (14%), Positives = 72/259 (27%), Gaps = 114/259 (44%)
Query: 280 EKPPGSMQIW----SILKNSIGKDLSTI----PMPLNFSEPLSMLQRLTEDFE---YAHV 328
+ + +W + K++ G + I P+ L +R+ E++ + +
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 329 LDEAAATDDVFR----APQYYCF---------TKFACQLNELEEGVAPTDSRLRPDQRLL 375
+D T+ +F+ Y F T+F Q A L
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT-Q-------PA-----------LT 1737
Query: 376 EVSHHPPIAAQYVEGKAWKAW---QDLAV---HS-----------------------KFR 406
+ A + + K+ A HS +R
Sbjct: 1738 LME-----KAAF---EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1789
Query: 407 GKYIQ-----------------VTPAGRFNLVFTKSSMAVLHEVLGMYHSGVFKDGQLVS 449
G +Q + P GR F++ ++ + E +G + G LV
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINP-GRVAASFSQEALQYVVERVGK------RTGWLVE 1842
Query: 450 --NKSTNKQDLKTIRGDQI 466
N N + Q
Sbjct: 1843 IVNY--N------VENQQY 1853
Score = 31.9 bits (72), Expect = 0.70
Identities = 35/206 (16%), Positives = 63/206 (30%), Gaps = 46/206 (22%)
Query: 302 TIPMPLNFSEPLSMLQRLTEDFEYAHVLDEAA---ATDDVFRAPQYYC--FTKFACQLNE 356
+ +P + + +L E F +L E A DD P F + L E
Sbjct: 19 VLLVP---TASFFIASQLQEQF--NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 357 LEEGVAPTDSRLRPDQRLLEVSHHPPIAAQYVEGKAWKAWQDLAVHS---KFRGKYIQVT 413
S++ ++L + Y+EG D +H+ K + T
Sbjct: 74 --------PSKVGQFDQVLNLCLTE-FENCYLEGN------D--IHALAAKLLQE-NDTT 115
Query: 414 PAGRFNLV--FTKSSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQ---ITW 468
L+ + + + +S +F+ L I G Q +
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFR------AVGEGNAQLVAIFGGQGNTDDY 169
Query: 469 IDG-RE---TYCSNIGRLISEVDAII 490
+ R+ TY +G LI +
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETL 195
Score = 28.1 bits (62), Expect = 9.0
Identities = 19/99 (19%), Positives = 26/99 (26%), Gaps = 42/99 (42%)
Query: 111 QHALVAAFSTSAYSTTAVRTGKPFNPL-----LGETYECDRTA---DAGWKAFSEQVSHH 162
Q AL +A+ + P + LGE Y A A S
Sbjct: 1733 QPALTLM-EKAAFEDLKSKGLIPADATFAGHSLGE-Y----AALASLAD--VMS------ 1778
Query: 163 PPIAAQYVEGKAWKAWQDLA--VHSKFRGKYIQVT-PAG 198
+ L V +RG +QV P
Sbjct: 1779 ---------------IESLVEVVF--YRGMTMQVAVPRD 1800
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 38.5 bits (89), Expect = 8e-04
Identities = 18/110 (16%), Positives = 42/110 (38%), Gaps = 23/110 (20%)
Query: 16 AEMKGWLF--KWTNYLK-GYQKRWFVLSNGLLSYYRNQAEMSHTC-RGTISLRGAII--- 68
+ ++GWL N K G+ K++ ++S+ + +Y ++ + + + +
Sbjct: 1 SRLEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRP 60
Query: 69 ----------QTEDSCTFIISNGV------QTFHIKASNEVERQRWVTAL 102
E F I + + A++ E+Q+WV+ L
Sbjct: 61 VTQTDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRL 110
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2;
hydrolase, phospholipase C, phosphoinositides, RHO
gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens}
PDB: 2w2w_A* 2w2x_C* 2k2j_A
Length = 124
Score = 38.2 bits (88), Expect = 0.001
Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 16/106 (15%)
Query: 20 GWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHT-------CRGTISLRGAIIQTED 72
G L+ W + + + + + +++ LS+ + + CRG + L +
Sbjct: 16 GELYMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAP 75
Query: 73 SC------TFIISN---GVQTFHIKASNEVERQRWVTALELAKSKA 109
FI+ G E W ++ K
Sbjct: 76 QGKNQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWKI 121
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 38.9 bits (90), Expect = 0.001
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 24 KWTNYLKGYQKRWFVLSNGLLSYYRNQAE-----MSHTCRGTISLRGAIIQ---TEDSCT 75
N ++ VL +L + + + + ISL+ I++ E+
Sbjct: 78 FLKNAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHEEKGL 137
Query: 76 FIIS---NGVQTFHIKASNEVERQRWVTALELAKSKARQ 111
F+IS + + AS++ ER W+ ++ + +
Sbjct: 138 FLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTLNR 176
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 39.8 bits (93), Expect = 0.002
Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 15/109 (13%)
Query: 18 MKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSH--TCRGTISLRG-AIIQTED-- 72
G + Q+R F L + + + +G I + +I ED
Sbjct: 259 YTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGR 318
Query: 73 --------SCTFIISN--GVQTFHIKASNEVERQRWVTALELAKSKARQ 111
F + N + A E+ RW+ A + ++
Sbjct: 319 DDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQE 367
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 39.2 bits (91), Expect = 0.002
Identities = 24/138 (17%), Positives = 56/138 (40%), Gaps = 28/138 (20%)
Query: 6 TTDIKASHSDAEMKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRG 65
D+ + + + +GWL K +K +++RWF+L++ L Y+ + RG I L
Sbjct: 203 GNDLTYTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEP--RGIIPLEN 260
Query: 66 AIIQTED---------------------SCTF-----IISNGVQTFHIKASNEVERQRWV 99
I+ + +C ++ + I A + E++ W+
Sbjct: 261 LSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWM 320
Query: 100 TALELAKSKARQHALVAA 117
+++ + S+ + ++A
Sbjct: 321 KSIKASISRDPFYDMLAT 338
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 39.6 bits (92), Expect = 0.002
Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 15/119 (12%)
Query: 8 DIKASHSDAEMKGWLFKWTNYLKGYQKRWFVL-SNGLLSYYRNQAEMSH-TCRGTISLRG 65
D+ S+ G L + T Q+R F L + L+ ++ +G + + G
Sbjct: 326 DLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDG 385
Query: 66 -AIIQTEDS----------CTFIISNG--VQTFHIKASNEVERQRWVTALELAKSKARQ 111
++ ED F + G + + ++QRW+ A + + +
Sbjct: 386 LEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQL 444
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 39.1 bits (91), Expect = 0.003
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 46 YYRNQAEMSHTCRGTISLRGAIIQ---TEDSCTFIIS---NGVQTFHIKASNEVERQRWV 99
+ A+ HT I L +++ T++ F+IS NG Q + + A E+ W
Sbjct: 302 ILASTADSKHTFSPVIKLSTVLVRQVATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQ 361
Query: 100 TALELAKSKARQ 111
+ + ++
Sbjct: 362 DLICRMAASVKE 373
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 38.3 bits (89), Expect = 0.005
Identities = 20/126 (15%), Positives = 49/126 (38%), Gaps = 16/126 (12%)
Query: 30 KGYQKRWFVLSNGLL------SYYRNQAEMSHTCRGTISLRGAIIQ---TEDSCTFIIS- 79
+G ++R F+ ++ R + + + +I + ++ D C F ++
Sbjct: 227 RGRERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQGDPCRFALTS 286
Query: 80 ----NGVQTFHIKASNEVERQRWVTALE--LAKSKARQHALVAAFSTSAYSTTAVRTGKP 133
G+Q + ++A++ Q W+ + L + +AL + + G+P
Sbjct: 287 RGPEGGIQRYVLQAADPAISQAWIKHVAQILESQRDFLNALQSPIEYQRRESQTNSLGRP 346
Query: 134 FNPLLG 139
P +G
Sbjct: 347 RGPGVG 352
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 38.3 bits (89), Expect = 0.005
Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 17/143 (11%)
Query: 18 MKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQ-------- 69
+ G L + + R+ L + L + + + S+ + +++L ++
Sbjct: 236 IDGELKITSVERRSKTDRYAFLLDKALLICKRRGD-SYDLKASVNLHSFQVRDDSSGERD 294
Query: 70 -TEDSCTFIIS--NGVQTFHIKASNEVERQRWVTALELAKSKARQHALVAAFSTSAYSTT 126
+ S F++ G Q + + +++W+ E+A S A +
Sbjct: 295 NKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENATANGHDFQMFSF 354
Query: 127 AVRT-----GKPFNPLLGETYEC 144
T + Y C
Sbjct: 355 EETTSCKACQMLLRGTFYQGYRC 377
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 35.6 bits (82), Expect = 0.006
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 30 KGYQKRWFVLSNGLL--SYYRNQAEMSHTCRGTISLRG-AIIQTEDSCT----FIISNGV 82
Q+ L N L + + Q + L A++ +D+ F +
Sbjct: 23 AQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLLMFP 82
Query: 83 QTFHIKASNEVERQRWVTALELAKSKARQ 111
++ +A N ++ W+ LE K
Sbjct: 83 ESRIFQAENAKIKREWLEVLEETKRALSD 111
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 37.6 bits (87), Expect = 0.010
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 49 NQAEMSHTCRGTISLRGAII---QTEDSCTFIIS----NGVQTFHIKASNEVERQRWVTA 101
++ T + L +I T+ FII Q + + A ++ W+
Sbjct: 343 GSSDSKQTFSPVLKLNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMEL 402
Query: 102 LELAKSKARQH 112
LE A A H
Sbjct: 403 LEEAVRNAHHH 413
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 37.3 bits (86), Expect = 0.013
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 7/111 (6%)
Query: 33 QKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQ-----TEDSCTFIISNGVQTFHI 87
K++ V S + + I L +++ + D F IS+ + + +
Sbjct: 283 VKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPTDPSSDEPVFHISHIDRVYTL 342
Query: 88 KASNEVERQRWVTALELAKSKARQHALVAAFSTSAYSTTAVRTGKPFNPLL 138
+ N ER WV ++ A + AY + +T ++
Sbjct: 343 RTDNINERTAWVQKIKAASEQYIDTEKK--QREKAYQARSQKTSGIGRLMV 391
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 36.2 bits (83), Expect = 0.026
Identities = 19/143 (13%), Positives = 45/143 (31%), Gaps = 17/143 (11%)
Query: 18 MKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAIIQ-------- 69
+ G L + + R+ L + L + + + S+ + ++L ++
Sbjct: 408 IDGELKITSVERRSKMDRYAFLLDKALLICKRRGD-SYDLKDFVNLHSFQVRDDSSGDRD 466
Query: 70 -TEDSCTFIIS--NGVQTFHIKASNEVERQRWVTALELAKSKARQHALVAAFSTSAYSTT 126
+ S F++ G Q + + +++W+ E+A S A +
Sbjct: 467 NKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENATANGHDFQMFSF 526
Query: 127 AVRT-----GKPFNPLLGETYEC 144
T + Y C
Sbjct: 527 EETTSCKACQMLLRGTFYQGYRC 549
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 35.6 bits (82), Expect = 0.038
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 49 NQAEMSHTCRGTISLRGAIIQ---TEDSCTFIIS----NGVQTFHIKASNEVERQRWVTA 101
++ T + L +I+ T+ FII Q + + A ++ W+
Sbjct: 301 GSSDSKQTFSPVLKLNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMEL 360
Query: 102 LELAKSKA 109
LE A A
Sbjct: 361 LEEAVRNA 368
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center
for structural genomics of infectious diseases, csgid,
transcription; HET: MSE; 2.00A {Shigella flexneri 2A}
SCOP: c.124.1.8
Length = 266
Score = 34.4 bits (79), Expect = 0.072
Identities = 8/100 (8%), Positives = 22/100 (22%), Gaps = 4/100 (4%)
Query: 237 DVINVTTGSTCRLTFYPYSYFSRQTQRRVLPWKPNTPRRSIIPEKPPGSMQIWSILKNSI 296
D++ + G + Q +P + E + +
Sbjct: 62 DIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGK---LESRYHVNTLTYSAAAKL 118
Query: 297 GKDLSTIPMPLNFSEPLSMLQRLTEDFEYAHVLDEAAATD 336
+ P P + + + + + D
Sbjct: 119 KGESHLADFPALLDNP-LIRNGIMQSQHFKTISAYWDNLD 157
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 34.5 bits (79), Expect = 0.082
Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 19/117 (16%)
Query: 8 DIKASHSDAEMKGWLFKWTNYLKGYQKRWFVLSNGLL---------SYYRNQAEMSHTCR 58
DI ++ M+G L + + +R L +GL+ + + +
Sbjct: 239 DIGQCCNEFIMEGTLTR----VGAKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLK 294
Query: 59 GTISLRGAII-----QTEDSCTF-IISNGVQTFHIKASNEVERQRWVTALELAKSKA 109
+R I E F II + A + E+ W+ AL + ++
Sbjct: 295 EKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRS 351
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral
protein; HET: MLR; 2.29A {Escherichia coli}
Length = 523
Score = 33.7 bits (77), Expect = 0.17
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 105 AKSKARQHA--LVAAFSTSAYSTTAVRTGKPFNPLLGETYECDRTADAGWKAFSEQVSH- 161
A S ++ A + + + AV KP + ++YE + D A E
Sbjct: 269 AASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKG 328
Query: 162 HP-PIAAQYVEGKAWKAWQDLAVHSKFRGK 190
P Q W A + AV + G+
Sbjct: 329 EIMPNIPQM--SAFWYAVRT-AVINAASGR 355
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase,
PKB, pleckstrin homology domain, inositol phosphate,
signal transduction; HET: 4PT; 1.45A {Homo sapiens}
SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Length = 151
Score = 32.1 bits (72), Expect = 0.20
Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 18 MKGWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRGAI-IQTEDSCTF 76
G + K ++R +L+ G YY + +G I + + ++ TF
Sbjct: 54 KMGPVDKRKGLF--ARRRQLLLTEGPHLYYVDPVNK--VLKGEIPWSQELRPEAKNFKTF 109
Query: 77 IISNGVQTFHIKASNEVERQRWVTALE 103
+ +T+++ +W ++
Sbjct: 110 FVHTPNRTYYLM-DPSGNAHKWCRKIQ 135
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP
fusion, AHA1/BPI domain-like, super roll, sugar T
transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Length = 568
Score = 32.9 bits (75), Expect = 0.26
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 105 AKSKARQHA--LVAAFSTSAYSTTAVRTGKPFNPLLGETYECDRTADAGWKAFSEQVSH- 161
A S ++ A + + + AV KP + ++YE + D A E
Sbjct: 268 AASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKG 327
Query: 162 HP-PIAAQYVEGKAWKAWQDLAVHSKFRGK 190
P Q W A + AV + G+
Sbjct: 328 EIMPNIPQM--SAFWYAVRT-AVINAASGR 354
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 129
Score = 31.5 bits (71), Expect = 0.27
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 11 ASHSDAEMK-GWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAEMSHTCRGTISLRG--AI 67
+S S +K GW+ +T+ ++ ++ L + L+ ++N E I L I
Sbjct: 2 SSGSSGMVKEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQN--ESGSKYYKEIPLSEILRI 59
Query: 68 IQTEDSCTFIISNGVQTFHIKASNEV 93
D + F I V
Sbjct: 60 SSPRDFTNISQGSNPHCFEIITDTMV 85
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH;
alpha-amylase inhibitors (AAI), lipid transfer (LT) and
SEED (SS) protein family; HET: MLR; 2.71A {Escherichia
coli}
Length = 500
Score = 32.9 bits (75), Expect = 0.28
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 105 AKSKARQHA--LVAAFSTSAYSTTAVRTGKPFNPLLGETYECDRTADAGWKAFSEQVSH- 161
A S ++ A + + + AV KP + ++YE + D A E
Sbjct: 268 AASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKG 327
Query: 162 HP-PIAAQYVEGKAWKAWQDLAVHSKFRGK 190
P Q W A + AV + G+
Sbjct: 328 EIMPNIPQM--SAFWYAVRT-AVINAASGR 354
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 92
Score = 30.2 bits (69), Expect = 0.35
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 353 QLNELE-EGVAPTDSRLRPDQ 372
L +E G RLR D+
Sbjct: 43 ALPRVEEGGAEEALGRLREDE 63
>2vgq_A Maltose-binding periplasmic protein, mitochondrial
antiviral-signaling protein; immune system/transport,
IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Length = 477
Score = 32.5 bits (74), Expect = 0.35
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 105 AKSKARQHA--LVAAFSTSAYSTTAVRTGKPFNPLLGETYECDRTADAGWKAFSEQVSH- 161
A S ++ A + + + AV KP + ++YE + D A E
Sbjct: 283 AASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKG 342
Query: 162 HP-PIAAQYVEGKAWKAWQDLAVHSKFRGK 190
P Q W A + AV + G+
Sbjct: 343 EIMPNIPQM--SAFWYAVRT-AVINAASGR 369
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA
polymerase beta motif; 2.00A {Escherichia coli} SCOP:
a.24.16.4 d.218.1.9
Length = 440
Score = 32.5 bits (74), Expect = 0.36
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 8/86 (9%)
Query: 322 DFEYAHVLDEAAATDDVFRAPQYY-CFTKFACQLNEL------EEGVAPTDSRLRPDQRL 374
D + E T R FT+ +L ++ + V D RLRP
Sbjct: 173 DIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIKVLDQPTQDGFVYRVDMRLRPFGES 232
Query: 375 LEVSHHPPIAAQYVEGKAWKAWQDLA 400
+ Y + + W+ A
Sbjct: 233 GPLVLSFAALEDYYQEQGR-DWERYA 257
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator
protein R and maltose...; novel fold for DNA binding;
HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28
c.94.1.1
Length = 487
Score = 32.5 bits (74), Expect = 0.38
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 105 AKSKARQHA--LVAAFSTSAYSTTAVRTGKPFNPLLGETYECDRTADAGWKAFSEQVSH- 161
A S ++ A + + + AV KP + ++YE + D A E
Sbjct: 268 AASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKG 327
Query: 162 HP-PIAAQYVEGKAWKAWQDLAVHSKFRGK 190
P Q W A + AV + G+
Sbjct: 328 EIMPNIPQM--SAFWYAVRT-AVINAASGR 354
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera;
MCSG, pcsep, MBP-fused target, structural genomics; HET:
MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A*
3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A*
3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A*
2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ...
Length = 487
Score = 32.1 bits (73), Expect = 0.48
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 105 AKSKARQHA--LVAAFSTSAYSTTAVRTGKPFNPLLGETYECDRTADAGWKAFSEQVSH- 161
A S ++ A + + + AV KP + ++YE + D A E
Sbjct: 272 AASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKG 331
Query: 162 HP-PIAAQYVEGKAWKAWQDLAVHSKFRGK 190
P Q W A + AV + G+
Sbjct: 332 EIMPNIPQM--SAFWYAVRT-AVINAASGR 358
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic
protein; HIV, antiviral protein; 2.80A {Escherichia
coli}
Length = 471
Score = 32.1 bits (73), Expect = 0.49
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 105 AKSKARQHA--LVAAFSTSAYSTTAVRTGKPFNPLLGETYECDRTADAGWKAFSEQVSH- 161
A S ++ A + + + AV KP + ++YE + D A E
Sbjct: 282 AASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKG 341
Query: 162 HP-PIAAQYVEGKAWKAWQDLAVHSKFRGK 190
P Q W A + AV + G+
Sbjct: 342 EIMPNIPQM--SAFWYAVRT-AVINAASGR 368
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein;
viral protein, viral membrane fusion, hairpin, chimera;
HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Length = 463
Score = 31.7 bits (72), Expect = 0.57
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 105 AKSKARQHA--LVAAFSTSAYSTTAVRTGKPFNPLLGETYECDRTADAGWKAFSEQVSH- 161
A S ++ A + + + AV KP + ++YE + D A E
Sbjct: 269 AASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKG 328
Query: 162 HP-PIAAQYVEGKAWKAWQDLAVHSKFRGK 190
P Q W A + AV + G+
Sbjct: 329 EIMPNIPQM--SAFWYAVRT-AVINAASGR 355
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 31.6 bits (71), Expect = 0.64
Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 6/71 (8%)
Query: 46 YYRNQAEMSHTCRGTISLRGAIIQTEDSC------TFIISNGVQTFHIKASNEVERQRWV 99
+ R + L A+ + + F Q + + A ER+ W
Sbjct: 457 TLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWC 516
Query: 100 TALELAKSKAR 110
+ +
Sbjct: 517 ALITETAGSLK 527
>3osq_A Maltose-binding periplasmic protein, green fluore protein;
engineered protein, sensor protein, fluorescent protein,
MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia
coli}
Length = 661
Score = 31.7 bits (71), Expect = 0.77
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 105 AKSKARQHA--LVAAFSTSAYSTTAVRTGKPFNPLLGETYECDRTADAGWKAFSEQVSH- 161
A S ++ A + + + AV KP + ++YE + D A E
Sbjct: 550 AASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELVKDPRIAATMENAQKG 609
Query: 162 HP-PIAAQYVEGKAWKAWQDLAVHSKFRGK 190
P Q W A + AV + G+
Sbjct: 610 EIMPNIPQM--SAFWYAVRT-AVINAASGR 636
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 31.5 bits (71), Expect = 0.78
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 58 RGTISLRGAIIQ---TEDSCTFII--SNGVQTFHIKASNEVERQRWVTALELAKSKARQH 112
+ ++++ I D+ F I + + + I+A + WV A+ + Q
Sbjct: 271 KQSLNMTAVGITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQA 330
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural
genomics, structural genomics consortium, SGC; 2.39A
{Homo sapiens}
Length = 140
Score = 30.0 bits (67), Expect = 0.93
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 14/90 (15%)
Query: 30 KGYQKRWFVLSNGLLSY----YRNQAEMSHTCRGTISLRGAIIQTEDS-----CTFIISN 80
G +R L N LL + + ++++ R + SL G + ++ + S+
Sbjct: 31 LGLHQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFENQYYPNGIRLTSS 90
Query: 81 -----GVQTFHIKASNEVERQRWVTALELA 105
+ A N +R+++ L +
Sbjct: 91 VPGADIKVLINFNAPNPQDRKKFTDDLRES 120
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell
membrane protein, immunoglobulin-folding, inter
adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Length = 507
Score = 31.3 bits (71), Expect = 0.94
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 105 AKSKARQHA--LVAAFSTSAYSTTAVRTGKPFNPLLGETYECDRTADAGWKAFSEQVSH- 161
A S ++ A + + + AV KP + ++YE + D A E
Sbjct: 268 AASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKG 327
Query: 162 HP-PIAAQYVEGKAWKAWQDLAVHSKFRGK 190
P Q W A + AV + G+
Sbjct: 328 EIMPNIPQM--SAFWYAVRT-AVINAASGR 354
>3bb9_A Putative orphan protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP:
d.17.4.16
Length = 148
Score = 29.8 bits (66), Expect = 1.0
Identities = 13/44 (29%), Positives = 16/44 (36%)
Query: 117 AFSTSAYSTTAVRTGKPFNPLLGETYECDRTADAGWKAFSEQVS 160
A STS GK + + ET + AD WK S
Sbjct: 105 AISTSISHAQGEYKGKSIDSMTMETLVLIKQADGRWKITHVHWS 148
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 31.0 bits (70), Expect = 1.0
Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Query: 46 YYRNQAEMSHTCRGTISLRGAIIQ---TEDSCTFIIS---NGVQTFHIKASNEVERQRWV 99
+ R + L A+ + T+ +++ Q + + A ER+ W
Sbjct: 304 TLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWC 363
Query: 100 TALELAKSKAR 110
+ +
Sbjct: 364 ALITETAGSLK 374
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding,
transcription, transcription regulator, transcription
regulation; 3.20A {Klebsiella pneumoniae}
Length = 315
Score = 30.5 bits (69), Expect = 1.2
Identities = 11/100 (11%), Positives = 25/100 (25%), Gaps = 4/100 (4%)
Query: 237 DVINVTTGSTCRLTFYPYSYFSRQTQRRVLPWKPNTPRRSIIPEKPPGSMQIWSILKNSI 296
D+I + G R S+ Q +P + E + +
Sbjct: 111 DIIGFSWGRAVRSLVENLPQRSQSRQVICVPIIGGPSGK---LESRYHVNTLTYGAAARL 167
Query: 297 GKDLSTIPMPLNFSEPLSMLQRLTEDFEYAHVLDEAAATD 336
+ P P + + + + + + D
Sbjct: 168 KAESHLADFPALLDNP-LIRNGIMQSQHFKTISSYWDSLD 206
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 30.5 bits (69), Expect = 1.2
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 75 TFIISNGVQTFHIKASNEVERQRWVTALELAK 106
+F + QT ++A++ +Q+W+ + AK
Sbjct: 314 SFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 30.5 bits (69), Expect = 1.4
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 8/54 (14%)
Query: 58 RGTISLRGAIIQ---TEDSCTFII-----SNGVQTFHIKASNEVERQRWVTALE 103
+ + + D C F + +KAS+ +Q W+ +
Sbjct: 251 KSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIR 304
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 28.8 bits (64), Expect = 2.1
Identities = 7/43 (16%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 11 ASHSDAEMK-GWLFKWTNYLKGYQKRWFVLSNGLLSYYRNQAE 52
+S S ++ GW+ ++N ++ ++ L ++ ++N
Sbjct: 2 SSGSSGTLREGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTT 44
>2yjk_A AFP, DPS; metal-binding protein, iron uptake, ferritin fold; 2.00A
{Microbacterium arborescens} PDB: 2yjj_A
Length = 161
Score = 29.3 bits (66), Expect = 2.1
Identities = 6/63 (9%), Positives = 19/63 (30%), Gaps = 13/63 (20%)
Query: 281 KPPGSMQIWSILKNSIGKDLSTIPMPLNFSEPLSMLQRLTEDFEYA-----HVLDEAAAT 335
+ + + ++ +P F++ ++ + D + A +D
Sbjct: 82 PIDSRVSTMA--------EKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEV 133
Query: 336 DDV 338
D
Sbjct: 134 DLT 136
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 29.2 bits (65), Expect = 3.8
Identities = 7/33 (21%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 83 QTFHIKASNEVERQRWVTAL-ELAKSKARQHAL 114
+ FH+ S+ R+ ++ ++ + + K R+ L
Sbjct: 342 RVFHLCCSSPESRKDFLKSVHSILRDKHRRQLL 374
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 28.8 bits (65), Expect = 4.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 220 VHNVIVGNLWVDQHGESDVINVTTG 244
V +V NLW ++G S + N+ TG
Sbjct: 261 VGDVADVNLWFLENGVSGIFNLGTG 285
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold,
structural genomics, center for structural genomics of
infectious diseases; 1.99A {Campylobacter jejuni}
Length = 152
Score = 28.1 bits (63), Expect = 5.0
Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 14/64 (21%)
Query: 280 EKPPGSMQIWSILKNSIGKDLSTIP-MPLNFSEPLSMLQRLTEDFE-----YAHVLDEAA 333
EK + +++ + P + + PL +++ + +D+E + + + A
Sbjct: 66 EKAITCQK--VLME------NAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAE 117
Query: 334 ATDD 337
D
Sbjct: 118 KESD 121
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 28.3 bits (64), Expect = 5.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 220 VHNVIVGNLWVDQHGESDVINVTTG 244
V +V NLW ++G S + N+ TG
Sbjct: 214 VGDVADVNLWFLENGVSGIFNLGTG 238
>1azw_A Proline iminopeptidase; aminopeptidase, serine protease,
xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP:
c.69.1.7
Length = 313
Score = 28.3 bits (62), Expect = 6.8
Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 12/105 (11%)
Query: 143 ECDRTADAGWKAFSEQVSHHPPIAAQYVEGKAWKAWQDLAVHSKFRGKYIQVTPAGRFNL 202
E A + + AA KAW W+ ++ F L
Sbjct: 170 ERADLMSAFHRRLTSDDEATRLAAA-----KAWSVWEGATSFLHVDEDFVTGHEDAHFAL 224
Query: 203 VFTKSNQHYTWNRVQSTVHNVIVGNLWVDQ-------HGESDVIN 240
F + HY N V + ++ + HG DV+
Sbjct: 225 AFARIENHYFVNGGFFEVEDQLLRDAHRIADIPGVIVHGRYDVVC 269
>2c2j_A DNA-binding stress response protein; DNA-binding protein, DPS;
2.05A {Deinococcus radiodurans} PDB: 2c6r_A
Length = 211
Score = 27.5 bits (61), Expect = 9.0
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 14/64 (21%)
Query: 281 KPPGSMQIWSILKNSIGKDLSTIP-MPLNFSEPLSMLQRLTEDFEYA-----HVLDEAAA 334
G +I+ S +P +P F + ++Q T +E + +
Sbjct: 109 SSDGRAI--TIVA------ASRLPEIPGGFLDDAQVIQFFTYQYETVGQRIHQRVGDVEK 160
Query: 335 TDDV 338
D
Sbjct: 161 VDPT 164
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 27.7 bits (62), Expect = 9.1
Identities = 23/141 (16%), Positives = 34/141 (24%), Gaps = 38/141 (26%)
Query: 351 ACQ-LNELEEGVAPTDSRLRPDQRLLEVSHHPPIAAQYVEGKAWKAWQDLAVHSKFRGKY 409
Q L E+ T P A V+G+ ++ G+
Sbjct: 175 GAQILAEVSTVAETTWITQHE----------PAFLADDVDGRVLFERATERWKAQQEGRE 224
Query: 410 IQVTPAGRFNLVFTKSSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWI 469
+ P G ++V VL GV + W
Sbjct: 225 PDLPPGGFGDIVMV-------PPVLDARARGVLAA----------VPPPARFSPTGMQWA 267
Query: 470 DGRETYCSNIGRLISEVDAII 490
DG E DA+I
Sbjct: 268 DGTER----------AFDAVI 278
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 28.2 bits (62), Expect = 9.7
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 238 VINVTTGSTCRLTFYPYSYFSRQTQRRVLPWKPNTPRR--SIIPEKPPGSMQIWSI 291
N G R+T++ R+ V + P+ + + ++ +
Sbjct: 84 FYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRV 139
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi
conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 28.0 bits (63), Expect = 9.9
Identities = 8/35 (22%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 490 IMRANRMVNNGRMGDFVINGRTKMLKEVYGHARVG 524
+++ R +NN M +V++ +++K + G +V
Sbjct: 287 LIQTGREINNS-MPAYVVDTTKQIIKALSG-NKVT 319
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.408
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,358,467
Number of extensions: 493764
Number of successful extensions: 1301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1223
Number of HSP's successfully gapped: 127
Length of query: 538
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 440
Effective length of database: 3,965,535
Effective search space: 1744835400
Effective search space used: 1744835400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.4 bits)