Query psy3489
Match_columns 129
No_of_seqs 107 out of 116
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 18:01:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3txn_A 26S proteasome regulato 99.8 6.8E-20 2.3E-24 155.2 10.9 109 4-120 75-186 (394)
2 4b4t_Q 26S proteasome regulato 98.9 3.3E-08 1.1E-12 77.1 13.1 111 4-122 114-224 (434)
3 4b4t_P 26S proteasome regulato 98.6 1.7E-07 6E-12 79.0 10.4 108 7-122 114-226 (445)
4 4b4t_R RPN7, 26S proteasome re 98.5 5E-07 1.7E-11 75.5 10.5 105 3-119 109-213 (429)
5 4b4t_O 26S proteasome regulato 96.9 3E-06 1E-10 70.6 -10.5 74 15-88 29-117 (393)
6 2qfc_A PLCR protein; TPR, HTH, 90.8 2.7 9.3E-05 31.1 9.9 108 6-122 176-285 (293)
7 4b4t_Q 26S proteasome regulato 90.2 3.5 0.00012 31.5 10.3 122 6-128 196-347 (434)
8 3u3w_A Transcriptional activat 88.0 1.1 3.8E-05 33.3 5.9 101 6-115 176-278 (293)
9 3q15_A PSP28, response regulat 87.3 8.2 0.00028 29.5 11.1 100 6-115 203-302 (378)
10 3ro3_A PINS homolog, G-protein 86.9 4.1 0.00014 25.5 9.4 85 7-97 71-155 (164)
11 3ulq_A Response regulator aspa 86.8 7.3 0.00025 29.6 10.1 101 6-115 205-305 (383)
12 3txn_A 26S proteasome regulato 84.8 0.85 2.9E-05 38.3 4.1 34 94-128 274-307 (394)
13 4b4t_R RPN7, 26S proteasome re 83.8 13 0.00044 30.5 10.8 29 100-128 310-338 (429)
14 3nf1_A KLC 1, kinesin light ch 83.8 9.5 0.00032 27.0 9.1 76 19-98 147-222 (311)
15 3ro2_A PINS homolog, G-protein 83.3 9.8 0.00034 26.8 9.4 85 7-97 245-329 (338)
16 3ro2_A PINS homolog, G-protein 82.9 10 0.00035 26.7 10.2 86 7-98 205-290 (338)
17 3edt_B KLC 2, kinesin light ch 81.2 11 0.00038 26.0 8.4 74 21-98 123-196 (283)
18 4a1s_A PINS, partner of inscut 80.8 15 0.00052 27.5 9.5 87 6-98 284-370 (411)
19 3sf4_A G-protein-signaling mod 80.3 15 0.00052 27.0 11.6 87 6-98 248-334 (406)
20 3qwp_A SET and MYND domain-con 80.1 8.7 0.0003 31.7 8.5 99 23-125 327-428 (429)
21 3sf4_A G-protein-signaling mod 80.0 16 0.00053 27.0 11.1 86 7-98 169-254 (406)
22 1orj_A Flagellar protein FLIS; 79.9 12 0.00042 26.7 8.2 75 28-127 32-117 (130)
23 3ro3_A PINS homolog, G-protein 79.4 9 0.00031 23.9 10.8 87 6-98 30-116 (164)
24 3iqc_A FLIS, flagellar protein 78.4 13 0.00044 26.5 8.0 77 28-127 39-122 (131)
25 3edt_B KLC 2, kinesin light ch 78.2 14 0.00049 25.5 10.5 88 7-98 65-154 (283)
26 3gw4_A Uncharacterized protein 78.0 13 0.00043 24.8 10.9 107 6-121 87-194 (203)
27 3ma5_A Tetratricopeptide repea 77.6 10 0.00035 23.6 7.5 80 29-123 11-90 (100)
28 3fp2_A TPR repeat-containing p 76.8 18 0.00061 28.1 9.0 86 28-126 421-534 (537)
29 4b4t_S RPN3, 26S proteasome re 75.5 1.9 6.4E-05 37.9 3.3 77 2-85 166-245 (523)
30 1vh6_A Flagellar protein FLIS; 74.8 10 0.00034 27.6 6.6 76 27-127 35-117 (145)
31 2kat_A Uncharacterized protein 74.5 13 0.00044 23.1 8.3 84 27-125 21-104 (115)
32 2xcb_A PCRH, regulatory protei 73.7 16 0.00054 23.8 9.9 91 18-126 49-139 (142)
33 4a1s_A PINS, partner of inscut 72.1 28 0.00097 26.0 10.4 84 9-98 207-290 (411)
34 3ieg_A DNAJ homolog subfamily 72.0 24 0.00083 25.2 11.3 89 19-124 266-354 (359)
35 1elr_A TPR2A-domain of HOP; HO 71.8 14 0.00047 22.3 12.1 89 26-125 39-127 (131)
36 4ga2_A E3 SUMO-protein ligase 68.9 23 0.00078 23.6 8.5 61 26-98 32-92 (150)
37 4gcn_A Protein STI-1; structur 68.4 21 0.00073 23.1 8.9 81 28-119 45-125 (127)
38 4gco_A Protein STI-1; structur 66.5 24 0.00082 23.0 8.8 77 28-121 50-126 (126)
39 3qww_A SET and MYND domain-con 63.4 62 0.0021 26.7 10.1 89 23-115 338-426 (433)
40 4b0z_A RPN12, 26S proteasome r 61.3 9.2 0.00032 29.2 4.2 26 28-53 10-35 (229)
41 3rkv_A Putative peptidylprolyl 56.3 40 0.0014 22.1 10.1 87 22-125 60-147 (162)
42 2xev_A YBGF; tetratricopeptide 55.9 33 0.0011 21.1 10.6 71 19-98 33-103 (129)
43 3gw4_A Uncharacterized protein 52.8 47 0.0016 21.9 11.3 88 6-98 47-134 (203)
44 3gyz_A Chaperone protein IPGC; 51.2 56 0.0019 22.4 10.2 85 17-123 66-150 (151)
45 4b0z_A RPN12, 26S proteasome r 49.9 41 0.0014 25.5 6.2 55 37-96 68-122 (229)
46 3vtx_A MAMA; tetratricopeptide 49.8 52 0.0018 21.6 6.8 57 29-97 9-65 (184)
47 3u3w_A Transcriptional activat 48.4 76 0.0026 23.1 8.5 69 25-98 155-223 (293)
48 3nf1_A KLC 1, kinesin light ch 48.0 68 0.0023 22.4 10.8 88 7-98 91-180 (311)
49 3n71_A Histone lysine methyltr 47.6 88 0.003 26.2 8.4 88 6-97 372-461 (490)
50 2kc7_A BFR218_protein; tetratr 46.4 44 0.0015 19.7 8.8 78 29-123 4-84 (99)
51 3upv_A Heat shock protein STI1 45.4 52 0.0018 20.3 7.5 84 27-123 40-125 (126)
52 3uq3_A Heat shock protein STI1 45.3 69 0.0023 21.7 6.5 58 29-98 177-234 (258)
53 2vgx_A Chaperone SYCD; alterna 43.2 70 0.0024 21.2 9.4 91 17-125 51-141 (148)
54 3cv0_A Peroxisome targeting si 42.8 66 0.0023 22.6 6.0 70 28-97 243-312 (327)
55 2ond_A Cleavage stimulation fa 42.7 98 0.0034 22.7 9.3 80 19-112 201-280 (308)
56 4b4t_P 26S proteasome regulato 42.6 49 0.0017 27.3 6.0 73 21-98 173-245 (445)
57 2ho1_A Type 4 fimbrial biogene 42.3 80 0.0027 21.6 9.3 27 28-54 144-170 (252)
58 2ifu_A Gamma-SNAP; membrane fu 42.2 1E+02 0.0035 22.8 12.1 87 6-98 136-222 (307)
59 1elw_A TPR1-domain of HOP; HOP 42.1 50 0.0017 19.2 12.1 78 26-120 39-116 (118)
60 3ieg_A DNAJ homolog subfamily 41.6 92 0.0031 22.1 8.2 63 28-98 237-299 (359)
61 3u4t_A TPR repeat-containing p 41.3 86 0.0029 21.7 7.7 67 19-97 68-134 (272)
62 3ulq_A Response regulator aspa 41.0 1.1E+02 0.0038 22.9 10.7 86 8-98 126-211 (383)
63 4b4t_T 26S proteasome regulato 40.6 80 0.0027 24.8 6.7 77 36-116 70-146 (274)
64 3n71_A Histone lysine methyltr 40.0 1.6E+02 0.0056 24.5 11.4 94 24-122 350-443 (490)
65 4dzo_A Mitotic spindle assembl 40.0 29 0.00098 24.7 3.6 27 71-97 4-30 (123)
66 2qfc_A PLCR protein; TPR, HTH, 39.6 1.1E+02 0.0037 22.3 8.0 69 25-98 155-223 (293)
67 3cv0_A Peroxisome targeting si 39.0 99 0.0034 21.7 7.2 58 29-98 59-116 (327)
68 3as5_A MAMA; tetratricopeptide 38.7 73 0.0025 20.1 6.9 62 25-98 42-103 (186)
69 2q7f_A YRRB protein; TPR, prot 37.8 91 0.0031 20.9 6.8 60 27-98 93-152 (243)
70 3as5_A MAMA; tetratricopeptide 36.9 78 0.0027 19.9 6.9 58 29-98 114-171 (186)
71 2lnm_A Protein TIC 40, chlorop 36.8 29 0.001 21.4 2.9 33 88-121 21-55 (62)
72 3t5x_A PCI domain-containing p 35.7 1.1E+02 0.0038 22.6 6.5 83 31-128 20-126 (203)
73 2dba_A Smooth muscle cell asso 35.5 77 0.0026 19.5 11.2 88 15-119 55-142 (148)
74 2fo7_A Synthetic consensus TPR 34.7 71 0.0024 18.8 7.0 23 31-53 41-63 (136)
75 3hym_B Cell division cycle pro 34.4 1.2E+02 0.0041 21.3 9.9 82 22-120 233-314 (330)
76 3q49_B STIP1 homology and U bo 34.1 82 0.0028 19.3 9.6 84 27-122 45-128 (137)
77 3q15_A PSP28, response regulat 34.0 1.5E+02 0.0051 22.3 10.4 86 8-98 124-209 (378)
78 2ifu_A Gamma-SNAP; membrane fu 32.2 1.5E+02 0.0052 21.8 9.6 85 7-98 98-182 (307)
79 2cmp_A G1P, terminase small su 32.0 7.8 0.00027 24.7 -0.5 20 101-120 43-62 (63)
80 2llv_A Heat shock protein STI1 31.6 31 0.0011 21.9 2.4 30 90-120 34-66 (71)
81 2fbn_A 70 kDa peptidylprolyl i 31.4 1.2E+02 0.0041 20.4 11.3 82 26-124 89-170 (198)
82 1ihg_A Cyclophilin 40; ppiase 30.4 1.9E+02 0.0066 22.5 10.5 85 23-124 271-355 (370)
83 1elr_A TPR2A-domain of HOP; HO 30.0 89 0.003 18.5 7.0 59 28-98 7-65 (131)
84 2ff4_A Probable regulatory pro 29.8 2.1E+02 0.0073 22.8 9.1 96 22-124 168-278 (388)
85 1hz4_A MALT regulatory protein 29.7 1.7E+02 0.0057 21.6 9.4 88 7-98 75-162 (373)
86 1xnf_A Lipoprotein NLPI; TPR, 29.2 1.4E+02 0.0047 20.4 6.4 60 27-98 79-138 (275)
87 4gcn_A Protein STI-1; structur 28.9 1.2E+02 0.0039 19.4 6.7 69 30-111 13-81 (127)
88 3u4t_A TPR repeat-containing p 28.8 1.4E+02 0.0049 20.5 10.3 87 25-120 176-265 (272)
89 2gw1_A Mitochondrial precursor 28.6 1.9E+02 0.0065 21.9 9.4 62 25-98 412-476 (514)
90 2kwh_A RAla-binding protein 1; 28.1 73 0.0025 20.1 3.6 35 38-74 9-43 (56)
91 2k7r_A Primosomal protein DNAI 26.8 32 0.0011 23.3 1.9 24 90-118 17-40 (106)
92 3mv2_B Coatomer subunit epsilo 26.4 1.7E+02 0.0056 23.4 6.4 59 29-97 104-162 (310)
93 1qqe_A Vesicular transport pro 26.3 1.9E+02 0.0065 21.0 11.3 87 6-97 139-225 (292)
94 2v5f_A Prolyl 4-hydroxylase su 25.0 1.3E+02 0.0045 18.8 10.4 80 27-116 7-86 (104)
95 3urz_A Uncharacterized protein 24.6 1.7E+02 0.006 20.0 7.4 58 29-98 58-115 (208)
96 2yhc_A BAMD, UPF0169 lipoprote 21.6 2.1E+02 0.007 19.8 8.6 61 29-98 151-211 (225)
97 3vtx_A MAMA; tetratricopeptide 21.2 1.8E+02 0.0061 18.9 6.9 60 27-98 109-168 (184)
98 4b4t_O 26S proteasome regulato 20.6 3.3E+02 0.011 21.9 8.3 109 6-122 60-177 (393)
No 1
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.81 E-value=6.8e-20 Score=155.22 Aligned_cols=109 Identities=19% Similarity=0.215 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhhCCcc-cchhhhhh--hhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHH
Q psy3489 4 LQDFYETTLEALKDAKND-RLWFKTNT--KLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQM 80 (129)
Q Consensus 4 l~~fYe~TL~aL~~~~Ne-RLWfKtnl--KLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQm 80 (129)
.+..|++++++++.++|+ |+|+|+++ |||++|+++|+|+++.+++.++++.|...|+ +++++|||++||||
T Consensus 75 ~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd------~~~llev~lle~~~ 148 (394)
T 3txn_A 75 TGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDD------KNLLVEVQLLESKT 148 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC------THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc------chhHHHHHHHHHHH
Confidence 467899999999999988 66669666 9999999999999999999999999996543 79999999999999
Q ss_pred HHhhhchHHHHHHHHHHHhhhcccccCCChHHHHHHHHHH
Q psy3489 81 YTAQKNNKKLKKLYELIQVKSSEQNIMDDPFIREHIEDLL 120 (129)
Q Consensus 81 yt~~kn~kkLk~lY~~i~~~~n~~~~~~~PfI~~~I~e~~ 120 (129)
|++++|++++++.|.++. + ..++|-+||.|.+.|+++.
T Consensus 149 ~~~~~n~~k~k~~l~~a~-~-~~~ai~~~p~i~a~i~~~~ 186 (394)
T 3txn_A 149 YHALSNLPKARAALTSAR-T-TANAIYCPPKVQGALDLQS 186 (394)
T ss_dssp HHHTTCHHHHHHHHHHHH-H-HHHHSCCCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHH-h-hhccCCCCHHHHHHHHHHh
Confidence 999999999999999984 2 3444459999999999874
No 2
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.89 E-value=3.3e-08 Score=77.13 Aligned_cols=111 Identities=17% Similarity=0.186 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHh
Q psy3489 4 LQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTA 83 (129)
Q Consensus 4 l~~fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~ 83 (129)
..++|+..+......+++.+|.++..+||++|++.|+|+...+++.+++..|...+ | .....|+|..++++|..
T Consensus 114 a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~ 187 (434)
T 4b4t_Q 114 QIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD---D---KPSLVDVHLLESKVYHK 187 (434)
T ss_dssp HHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS---C---STHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc---c---chhHHHHHHHHHHHHHH
Confidence 34677888888888899999999999999999999999999999999999998443 2 24689999999999999
Q ss_pred hhchHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHH
Q psy3489 84 QKNNKKLKKLYELIQVKSSEQNIMDDPFIREHIEDLLRN 122 (129)
Q Consensus 84 ~kn~kkLk~lY~~i~~~~n~~~~~~~PfI~~~I~e~~~~ 122 (129)
.+|.++.+.+|+++. + ....+-.+|.+.+.+..++-.
T Consensus 188 ~~~~~~A~~~~~~al-~-~~~~~~~~~~~~~~~~~~~g~ 224 (434)
T 4b4t_Q 188 LRNLAKSKASLTAAR-T-AANSIYCPTQTVAELDLMSGI 224 (434)
T ss_dssp TTCHHHHHHHHHHHH-H-HHHHSCCCHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHH-H-HhhcCCCchHHHHHHHHHHHH
Confidence 999999999999985 3 233333445788877776644
No 3
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.7e-07 Score=78.96 Aligned_cols=108 Identities=9% Similarity=0.133 Sum_probs=89.8
Q ss_pred HHHHHHHHHhhCCcccchh-----hhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHH
Q psy3489 7 FYETTLEALKDAKNDRLWF-----KTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMY 81 (129)
Q Consensus 7 fYe~TL~aL~~~~NeRLWf-----KtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmy 81 (129)
++..+++.+....+.|.|+ +...+||++|.+.|+|....+++.+|+..|. |.+| +...+|+|..|+++|
T Consensus 114 ~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~---~~~~---~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 114 TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY---GSME---MSEKIQFILEQMELS 187 (445)
T ss_dssp HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC---SSSC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH---hccc---HHHHHHHHHHHHHHH
Confidence 3445566666667788877 4459999999999999999999999999987 4333 568999999999999
Q ss_pred HhhhchHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHH
Q psy3489 82 TAQKNNKKLKKLYELIQVKSSEQNIMDDPFIREHIEDLLRN 122 (129)
Q Consensus 82 t~~kn~kkLk~lY~~i~~~~n~~~~~~~PfI~~~I~e~~~~ 122 (129)
.+.+|+.+.+.++.++.. +..++-++|.+.+.+.+++--
T Consensus 188 l~~~d~~~a~~~~~ki~~--~~~~~~~~~~lk~~~~~~~~~ 226 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILK--KTFKNPKYESLKLEYYNLLVK 226 (445)
T ss_dssp HHHTCHHHHHHHHHHHHH--HHHHSSCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--hhcccCCcHHHHHHHHHHHHH
Confidence 999999999999999852 355678899999999888754
No 4
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=5e-07 Score=75.46 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHH
Q psy3489 3 LLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYT 82 (129)
Q Consensus 3 ~l~~fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt 82 (129)
.+++|++.+.++.++..+|+.|.+++.++|+.|++.|+|+.+.+.+.+++..|.. +.+.+|++...|+++.
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---------~~~kid~~l~~irl~l 179 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS---------TGAKIDVMLTIARLGF 179 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC---------CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHH
Confidence 4688999999998889999999999999999999999999999999999999972 2368999999999999
Q ss_pred hhhchHHHHHHHHHHHhhhcccccCCChHHHHHHHHH
Q psy3489 83 AQKNNKKLKKLYELIQVKSSEQNIMDDPFIREHIEDL 119 (129)
Q Consensus 83 ~~kn~kkLk~lY~~i~~~~n~~~~~~~PfI~~~I~e~ 119 (129)
..+|+...+..+.++. ....--.||.+++.+..+
T Consensus 180 ~~~d~~~~~~~~~ka~---~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 180 FYNDQLYVKEKLEAVN---SMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp HHTCHHHHHHHHHHHH---HHHTTCCCTHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH---HhhhcCCCHHHHHHHHHH
Confidence 9999999999999984 344456899999887654
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=3e-06 Score=70.59 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=43.7
Q ss_pred HhhCCcccchhhhhhhhHHHhhchhhhhHHHHH----HHH----------HHHhccCCCCC-ccccchhHHHHHHHHHHH
Q psy3489 15 LKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRI----LKQ----------LHQSCQTDDGE-DDLKKGTQLLEIYALEIQ 79 (129)
Q Consensus 15 L~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~----l~~----------L~~~c~~~dg~-dd~~kgt~lLEiyALEIQ 79 (129)
|++..|+|||+++++||.+++.+.+.++...++ |.+ ++-.|....+. |.....+++-++++..++
T Consensus 29 le~~~~~kLWhqlt~~L~~~~~~~~~~~~~~~ly~~fi~~f~~kin~L~lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~ 108 (393)
T 4b4t_O 29 FEKFYEEKLWFQLSESLTKFFDDAKSTPLRLRLYDNFVSKFYDKINQLSVVKYLLASLKDSKDFDESLKYLDDLKAQFQE 108 (393)
T ss_dssp HHHHHCCSSCCSCCCTTHHHHCCCSSCCCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHTTCHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhChhcchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Confidence 556669999999999999999987666554433 111 11111111122 333444555567777777
Q ss_pred HHHhhhchH
Q psy3489 80 MYTAQKNNK 88 (129)
Q Consensus 80 myt~~kn~k 88 (129)
++++..+++
T Consensus 109 ~~~~~~~~~ 117 (393)
T 4b4t_O 109 LDSKKQRNN 117 (393)
T ss_dssp HHSSCCCCC
T ss_pred hhhhhhccc
Confidence 776655443
No 6
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=90.77 E-value=2.7 Score=31.15 Aligned_cols=108 Identities=9% Similarity=0.105 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhCCc-ccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhh
Q psy3489 6 DFYETTLEALKDAKN-DRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQ 84 (129)
Q Consensus 6 ~fYe~TL~aL~~~~N-eRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~ 84 (129)
.+|+..++..+..++ ..+...+...+|.+|+..|+|++.-..+.+....+... ++ ...+-++|-.--..|...
T Consensus 176 ~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~---~~---~~~~~~~~~~lg~~y~~~ 249 (293)
T 2qfc_A 176 DLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI---NS---MALIGQLYYQRGECLRKL 249 (293)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TB---CSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc---Cc---HHHHHHHHHHHHHHHHHc
Confidence 345555544454433 34445788899999999999999998888877765311 11 113556777777788899
Q ss_pred hchHHH-HHHHHHHHhhhcccccCCChHHHHHHHHHHHH
Q psy3489 85 KNNKKL-KKLYELIQVKSSEQNIMDDPFIREHIEDLLRN 122 (129)
Q Consensus 85 kn~kkL-k~lY~~i~~~~n~~~~~~~PfI~~~I~e~~~~ 122 (129)
++..+= ...|+++. .......+|...+.|+.+...
T Consensus 250 g~~~~Ai~~~~~~Al---~~~~~~~~~~~~~~~~~~~~~ 285 (293)
T 2qfc_A 250 EYEEAEIEDAYKKAS---FFFDILEMHAYKEALVNKISR 285 (293)
T ss_dssp TCCHHHHHHHHHHHH---HHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH---HHHHHhCcHhhHHHHHHHHHH
Confidence 888765 77788874 355667888888888777654
No 7
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.19 E-value=3.5 Score=31.50 Aligned_cols=122 Identities=15% Similarity=0.190 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhhCC-cccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHH-------
Q psy3489 6 DFYETTLEALKDAK-NDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALE------- 77 (129)
Q Consensus 6 ~fYe~TL~aL~~~~-NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALE------- 77 (129)
.+|+..+....... +.+++-.....++.++...++|....+...+..+.....+..+....-.+.+-.+.+-
T Consensus 196 ~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 275 (434)
T 4b4t_Q 196 ASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLI 275 (434)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccch
Confidence 44554444433333 4477788888899999999999998877666655443322222222111111111110
Q ss_pred ---HHHHHhh-----hc---hHHHHHH-----------HHHHHhhhcccccCCChHHHHHHHHHHHHHhhhhc
Q psy3489 78 ---IQMYTAQ-----KN---NKKLKKL-----------YELIQVKSSEQNIMDDPFIREHIEDLLRNIRTQVM 128 (129)
Q Consensus 78 ---IQmyt~~-----kn---~kkLk~l-----------Y~~i~~~~n~~~~~~~PfI~~~I~e~~~~~r~~~~ 128 (129)
+...... .+ .+.+..+ |++++ .........||++..|+.++.+++|++.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 347 (434)
T 4b4t_Q 276 DDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTAL-KQYEKELMGDELTRSHFNALYDTLLESNL 347 (434)
T ss_dssp HHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHH-HHTHHHHTCSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHH-HHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 1111100 01 1122222 34442 33567789999999999999999998764
No 8
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=87.97 E-value=1.1 Score=33.30 Aligned_cols=101 Identities=11% Similarity=0.123 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhhC-CcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhh
Q psy3489 6 DFYETTLEALKDA-KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQ 84 (129)
Q Consensus 6 ~fYe~TL~aL~~~-~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~ 84 (129)
.+|+..++.++.. .+......+...+|.+|+..|+|.+....+.+..+.+...+. ...+-++|-.-=..|...
T Consensus 176 ~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~------~~~~~~~~~~lg~~~~~~ 249 (293)
T 3u3w_A 176 DLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS------MALIGQLYYQRGECLRKL 249 (293)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB------CTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc------HHHHHHHHHHHHHHHHHh
Confidence 4566666666655 577788889999999999999999999888887777652211 123556777667788888
Q ss_pred hc-hHHHHHHHHHHHhhhcccccCCChHHHHH
Q psy3489 85 KN-NKKLKKLYELIQVKSSEQNIMDDPFIREH 115 (129)
Q Consensus 85 kn-~kkLk~lY~~i~~~~n~~~~~~~PfI~~~ 115 (129)
++ ..+=.+.|++++ .....+.++.....
T Consensus 250 g~~~~~A~~~~~~Al---~i~~~~~~~~~~~~ 278 (293)
T 3u3w_A 250 EYEEAEIEDAYKKAS---FFFDILEMHAYKEA 278 (293)
T ss_dssp TCCHHHHHHHHHHHH---HHHHHTTCTGGGGG
T ss_pred CCcHHHHHHHHHHHH---HHHHHhCCHHHHHH
Confidence 85 477777788864 23334455544433
No 9
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=87.34 E-value=8.2 Score=29.46 Aligned_cols=100 Identities=14% Similarity=0.043 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhh
Q psy3489 6 DFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQK 85 (129)
Q Consensus 6 ~fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~k 85 (129)
+.|+..++..+..++......+...+|.+|...|+|++....+.+....++.. .++ ....++..--..|...+
T Consensus 203 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~----~~~~~~~~la~~~~~~g 275 (378)
T 3q15_A 203 PHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPD----LLPKVLFGLSWTLCKAG 275 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGG----GHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CCh----hHHHHHHHHHHHHHHCC
Confidence 45666666666677777788888999999999999999998888777755411 111 23566666677899999
Q ss_pred chHHHHHHHHHHHhhhcccccCCChHHHHH
Q psy3489 86 NNKKLKKLYELIQVKSSEQNIMDDPFIREH 115 (129)
Q Consensus 86 n~kkLk~lY~~i~~~~n~~~~~~~PfI~~~ 115 (129)
+..+=.+.|++.+ . ...-..+|.....
T Consensus 276 ~~~~A~~~~~~al-~--~~~~~~~~~~~~~ 302 (378)
T 3q15_A 276 QTQKAFQFIEEGL-D--HITARSHKFYKEL 302 (378)
T ss_dssp CHHHHHHHHHHHH-H--HCCTTCCSCHHHH
T ss_pred CHHHHHHHHHHHH-H--HHHHcCCHHHHHH
Confidence 9999899999975 2 3334455554443
No 10
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=86.90 E-value=4.1 Score=25.53 Aligned_cols=85 Identities=18% Similarity=0.080 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhc
Q psy3489 7 FYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKN 86 (129)
Q Consensus 7 fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn 86 (129)
+|+..++.....++......+...+|.++...++|+.....+.+....+...+. ......++..--..|...++
T Consensus 71 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~la~~~~~~g~ 144 (164)
T 3ro3_A 71 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD------RIGEGRACWSLGNAYTALGN 144 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc------hHhHHHHHHHHHHHHHHccC
Confidence 444444444444444444556666777777777777776666665555432111 12334445555556666777
Q ss_pred hHHHHHHHHHH
Q psy3489 87 NKKLKKLYELI 97 (129)
Q Consensus 87 ~kkLk~lY~~i 97 (129)
..+-.+.|++.
T Consensus 145 ~~~A~~~~~~a 155 (164)
T 3ro3_A 145 HDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77666666665
No 11
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=86.83 E-value=7.3 Score=29.64 Aligned_cols=101 Identities=11% Similarity=0.039 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhh
Q psy3489 6 DFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQK 85 (129)
Q Consensus 6 ~fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~k 85 (129)
+.|+..++..+..++.+....+...+|.+|...|+|++....+++..+.++..... .....++..--..|...+
T Consensus 205 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~l~~~~~~~g 278 (383)
T 3ulq_A 205 SHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL------PSLPQAYFLITQIHYKLG 278 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG------GGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc------hhHHHHHHHHHHHHHHCC
Confidence 45666666666777778888888999999999999999998888777765422110 123566667777888999
Q ss_pred chHHHHHHHHHHHhhhcccccCCChHHHHH
Q psy3489 86 NNKKLKKLYELIQVKSSEQNIMDDPFIREH 115 (129)
Q Consensus 86 n~kkLk~lY~~i~~~~n~~~~~~~PfI~~~ 115 (129)
+..+=.+.|++.+ . ...-..||.....
T Consensus 279 ~~~~A~~~~~~al-~--~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 279 KIDKAHEYHSKGM-A--YSQKAGDVIYLSE 305 (383)
T ss_dssp CHHHHHHHHHHHH-H--HHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHH-H--HHHHcCCHHHHHH
Confidence 9998888888874 2 3333456665544
No 12
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.82 E-value=0.85 Score=38.28 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=28.9
Q ss_pred HHHHHhhhcccccCCChHHHHHHHHHHHHHhhhhc
Q psy3489 94 YELIQVKSSEQNIMDDPFIREHIEDLLRNIRTQVM 128 (129)
Q Consensus 94 Y~~i~~~~n~~~~~~~PfI~~~I~e~~~~~r~~~~ 128 (129)
|.+++ ..+.+.++.|||+..|+..|.++||++.+
T Consensus 274 f~~iL-~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L 307 (394)
T 3txn_A 274 FQAAL-KEYKKELAEDVIVQAHLGTLYDTMLEQNL 307 (394)
T ss_dssp HHHHH-HHSTTTTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 46664 44788899999999999999999999875
No 13
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.80 E-value=13 Score=30.52 Aligned_cols=29 Identities=14% Similarity=0.383 Sum_probs=25.0
Q ss_pred hhcccccCCChHHHHHHHHHHHHHhhhhc
Q psy3489 100 KSSEQNIMDDPFIREHIEDLLRNIRTQVM 128 (129)
Q Consensus 100 ~~n~~~~~~~PfI~~~I~e~~~~~r~~~~ 128 (129)
.........|||+..|+.++.++||.+++
T Consensus 310 ~~~~~~l~~d~~l~~h~~~l~~~ir~~~l 338 (429)
T 4b4t_R 310 ETYANVLIPCKYLNRHADFFVREMRRKVY 338 (429)
T ss_dssp HHHSTTTTTCTTSTTTHHHHHHHHHHHHH
T ss_pred HHHHhhhccCHHHHHHHHHHHHHHHHHHH
Confidence 44566788999999999999999999875
No 14
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=83.78 E-value=9.5 Score=27.00 Aligned_cols=76 Identities=20% Similarity=0.178 Sum_probs=57.9
Q ss_pred CcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 19 KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 19 ~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
++..........+|.++...|+|+.....+++....+....+.+++ ....++..-..+|...++..+-.+.|++..
T Consensus 147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP----NVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445566777889999999999999999998888876644333322 345667777788999999998888888874
No 15
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=83.31 E-value=9.8 Score=26.82 Aligned_cols=85 Identities=19% Similarity=0.092 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhc
Q psy3489 7 FYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKN 86 (129)
Q Consensus 7 fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn 86 (129)
+|+..++.....++......+...+|.+|+..|+|++....+++........ ........++..--..|...++
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL------KDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHHcCC
Confidence 3333444333444444444555556666666666666665555544443210 0012233444445556666666
Q ss_pred hHHHHHHHHHH
Q psy3489 87 NKKLKKLYELI 97 (129)
Q Consensus 87 ~kkLk~lY~~i 97 (129)
..+=.+.|++.
T Consensus 319 ~~~A~~~~~~a 329 (338)
T 3ro2_A 319 HDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 66666666665
No 16
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=82.85 E-value=10 Score=26.71 Aligned_cols=86 Identities=15% Similarity=0.020 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhc
Q psy3489 7 FYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKN 86 (129)
Q Consensus 7 fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn 86 (129)
.|+..++.....++......+...+|.+++..|+|+.....+.+....+...+ + .....+++..-..+|...++
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~la~~~~~~g~ 278 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK---D---RAVEAQSCYSLGNTYTLLQD 278 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc---c---hhHHHHHHHHHHHHHHHhcC
Confidence 34444444444444455555777788888888888888877777666554211 1 22445666666778888888
Q ss_pred hHHHHHHHHHHH
Q psy3489 87 NKKLKKLYELIQ 98 (129)
Q Consensus 87 ~kkLk~lY~~i~ 98 (129)
..+=...|++.+
T Consensus 279 ~~~A~~~~~~a~ 290 (338)
T 3ro2_A 279 YEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888764
No 17
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=81.20 E-value=11 Score=26.02 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=56.0
Q ss_pred ccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 21 DRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 21 eRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
......+...+|.+++..|+|++....+.+..+.+....+.+++ ....++..--..|...++..+=.+.|+++.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP----NVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35556778889999999999999999888887776533333322 355666667788999999998888888874
No 18
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=80.75 E-value=15 Score=27.51 Aligned_cols=87 Identities=14% Similarity=0.017 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhh
Q psy3489 6 DFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQK 85 (129)
Q Consensus 6 ~fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~k 85 (129)
+.|+..++.....++......+...+|.+|...|+|++....+++....+...+ ......+++..-...|...+
T Consensus 284 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~la~~~~~~g 357 (411)
T 4a1s_A 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG------DRIGEARACWSLGNAHSAIG 357 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC------ChHHHHHHHHHHHHHHHHhc
Confidence 345555555555555555566777888888888888888877777666554111 12244556666677888888
Q ss_pred chHHHHHHHHHHH
Q psy3489 86 NNKKLKKLYELIQ 98 (129)
Q Consensus 86 n~kkLk~lY~~i~ 98 (129)
+..+=.+.|++.+
T Consensus 358 ~~~~A~~~~~~al 370 (411)
T 4a1s_A 358 GHERALKYAEQHL 370 (411)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 8888788888864
No 19
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=80.26 E-value=15 Score=27.02 Aligned_cols=87 Identities=17% Similarity=0.089 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhh
Q psy3489 6 DFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQK 85 (129)
Q Consensus 6 ~fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~k 85 (129)
..|+..++.....++......+...+|.+|+..|+|++....+.+........+. ......++..--..|...+
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~la~~~~~~g 321 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND------RIGEGRACWSLGNAYTALG 321 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC------cHHHHHHHHHHHHHHHHcC
Confidence 3445555555555555555666777888888888888777777666555432111 1233455555666777888
Q ss_pred chHHHHHHHHHHH
Q psy3489 86 NNKKLKKLYELIQ 98 (129)
Q Consensus 86 n~kkLk~lY~~i~ 98 (129)
+..+=.+.|++.+
T Consensus 322 ~~~~A~~~~~~al 334 (406)
T 3sf4_A 322 NHDQAMHFAEKHL 334 (406)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8888778888864
No 20
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=80.13 E-value=8.7 Score=31.67 Aligned_cols=99 Identities=11% Similarity=-0.027 Sum_probs=67.1
Q ss_pred chhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhc
Q psy3489 23 LWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSS 102 (129)
Q Consensus 23 LWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~n 102 (129)
-...+--.||.+|.++|+|++....-++..+-...--|.+.+.-|+.+..+-. .|..+++...=..+|++++.-..
T Consensus 327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~----~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK----LQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH----HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHHHH
Confidence 34566777999999999999999887766655544457777777777666543 57778888888888888641111
Q ss_pred ccccCCChHHHHH---HHHHHHHHhh
Q psy3489 103 EQNIMDDPFIREH---IEDLLRNIRT 125 (129)
Q Consensus 103 ~~~~~~~PfI~~~---I~e~~~~~r~ 125 (129)
..-=-+||.+++. ++++...||.
T Consensus 403 ~~lG~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 403 VTHGREHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp HHTCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHhc
Confidence 1111479999875 4444444443
No 21
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=80.02 E-value=16 Score=26.98 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhc
Q psy3489 7 FYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKN 86 (129)
Q Consensus 7 fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn 86 (129)
+|+..++.....++......+...+|.++...|+|+.....+++..+.+...+. ......++..--..|...++
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD------KAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC------cHHHHHHHHHHHHHHHHcCC
Confidence 444445545555556666778888999999999999999888887776653211 12345566667778888999
Q ss_pred hHHHHHHHHHHH
Q psy3489 87 NKKLKKLYELIQ 98 (129)
Q Consensus 87 ~kkLk~lY~~i~ 98 (129)
..+-.+.|++++
T Consensus 243 ~~~A~~~~~~al 254 (406)
T 3sf4_A 243 FETASEYYKKTL 254 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 998888888864
No 22
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=79.90 E-value=12 Score=26.73 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=48.7
Q ss_pred hhhhHHHhhchhhh-h----------HHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q psy3489 28 NTKLGKLYFDREDF-N----------KLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEL 96 (129)
Q Consensus 28 nlKLakL~ld~~ey-~----------~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~ 96 (129)
.++.|+..++++++ . |+..+|.+|..++..+.|.+ | -+.|..||.-
T Consensus 32 ~l~~A~~ai~~~d~~~~k~~~~~~i~KA~~Ii~eL~~sLd~e~Gge---------------i--------A~nL~~LY~y 88 (130)
T 1orj_A 32 CLERAIEIYDQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKE---------------I--------AKNLDTIYTI 88 (130)
T ss_dssp HHHHHHHTGGGTTSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTSHH---------------H--------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcH---------------H--------HHHHHHHHHH
Confidence 34567777777777 3 35788889999886555421 1 1234555555
Q ss_pred HHhhhcccccCCChHHHHHHHHHHHHHhhhh
Q psy3489 97 IQVKSSEQNIMDDPFIREHIEDLLRNIRTQV 127 (129)
Q Consensus 97 i~~~~n~~~~~~~PfI~~~I~e~~~~~r~~~ 127 (129)
+.... .++=.||.+..-+..++..||.-|
T Consensus 89 ~~~~L--An~~~d~~~l~ev~~ll~~lreaW 117 (130)
T 1orj_A 89 ILNTL--VKVDKTKEELQKILEILKDLREAW 117 (130)
T ss_dssp HHHHH--HCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--hcccCCHHHHHHHHHHHHHHHHHH
Confidence 43222 555678888888888888888654
No 23
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=79.41 E-value=9 Score=23.86 Aligned_cols=87 Identities=14% Similarity=-0.035 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhh
Q psy3489 6 DFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQK 85 (129)
Q Consensus 6 ~fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~k 85 (129)
+.|+..++.....++......+...+|.++...|+|++.....++..+.+...+. + .....++..--..|...+
T Consensus 30 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~---~~~~~~~~~l~~~~~~~~ 103 (164)
T 3ro3_A 30 IAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---R---AVEAQSCYSLGNTYTLLQ 103 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---H---HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---c---HHHHHHHHHHHHHHHHHh
Confidence 4455555555555565555667888999999999999999888887776652211 1 233455666667888889
Q ss_pred chHHHHHHHHHHH
Q psy3489 86 NNKKLKKLYELIQ 98 (129)
Q Consensus 86 n~kkLk~lY~~i~ 98 (129)
+..+=.+.|++.+
T Consensus 104 ~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 104 DYEKAIDYHLKHL 116 (164)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9888888888864
No 24
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=78.44 E-value=13 Score=26.48 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=48.9
Q ss_pred hhhhHHHhhchhhhh-------HHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhh
Q psy3489 28 NTKLGKLYFDREDFN-------KLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVK 100 (129)
Q Consensus 28 nlKLakL~ld~~ey~-------~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~ 100 (129)
.++.|+..++.+++. |+..+|.+|..++..+ +|. || -..|..||.-+...
T Consensus 39 ~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e-------~Gg--------ei--------A~nL~~LY~y~~~~ 95 (131)
T 3iqc_A 39 FSSQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYE-------KGG--------EV--------AVYLTGLYTHQIKV 95 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTBCHH-------HHH--------HH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCc-------ccc--------HH--------HHHHHHHHHHHHHH
Confidence 456777888888887 6677888888887522 221 11 12344444443222
Q ss_pred hcccccCCChHHHHHHHHHHHHHhhhh
Q psy3489 101 SSEQNIMDDPFIREHIEDLLRNIRTQV 127 (129)
Q Consensus 101 ~n~~~~~~~PfI~~~I~e~~~~~r~~~ 127 (129)
....++=.||.+..-+..++..||.-|
T Consensus 96 L~~An~~~d~~~l~ev~~ll~~lr~aW 122 (131)
T 3iqc_A 96 LTQANVENDASKIDLVLNVARGLLEAW 122 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 234445568999999999999999755
No 25
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=78.18 E-value=14 Score=25.46 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhC--CcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhh
Q psy3489 7 FYETTLEALKDA--KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQ 84 (129)
Q Consensus 7 fYe~TL~aL~~~--~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~ 84 (129)
+|+..++..+.. .+......+...+|.+|...|+|++....+.+....+....+.++ ....+++..--..|...
T Consensus 65 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~ 140 (283)
T 3edt_B 65 LLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH----PDVAKQLNNLALLCQNQ 140 (283)
T ss_dssp HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC----hHHHHHHHHHHHHHHHc
Confidence 344444443333 444556678888999999999999999888887776643222222 24567777777889999
Q ss_pred hchHHHHHHHHHHH
Q psy3489 85 KNNKKLKKLYELIQ 98 (129)
Q Consensus 85 kn~kkLk~lY~~i~ 98 (129)
++..+=.+.|++.+
T Consensus 141 g~~~~A~~~~~~al 154 (283)
T 3edt_B 141 GKAEEVEYYYRRAL 154 (283)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99998888888874
No 26
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=78.04 E-value=13 Score=24.81 Aligned_cols=107 Identities=10% Similarity=0.019 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhCCccc-chhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhh
Q psy3489 6 DFYETTLEALKDAKNDR-LWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQ 84 (129)
Q Consensus 6 ~fYe~TL~aL~~~~NeR-LWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~ 84 (129)
+.|+..++..+..+++. ........+|.++...|+|+.....+.+....++..+ ++ .....++..--..|...
T Consensus 87 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~---~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 87 RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD---DQ---VAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---CH---HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc---ch---HHHHHHHHHHHHHHHHC
Confidence 45566666666565333 5566778899999999999999988887776654221 11 12334455556678888
Q ss_pred hchHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHH
Q psy3489 85 KNNKKLKKLYELIQVKSSEQNIMDDPFIREHIEDLLR 121 (129)
Q Consensus 85 kn~kkLk~lY~~i~~~~n~~~~~~~PfI~~~I~e~~~ 121 (129)
++..+=.+.|++.+ ....-+.||.-...+...+.
T Consensus 161 g~~~~A~~~~~~al---~~~~~~~~~~~~~~~~~~~~ 194 (203)
T 3gw4_A 161 KNLLEAQQHWLRAR---DIFAELEDSEAVNELMTRLN 194 (203)
T ss_dssp TCHHHHHHHHHHHH---HHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH---HHHHHcCCHHHHHHHHhccc
Confidence 99998888888874 24455678877766665554
No 27
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=77.58 E-value=10 Score=23.55 Aligned_cols=80 Identities=9% Similarity=0.054 Sum_probs=56.3
Q ss_pred hhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhcccccCC
Q psy3489 29 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQNIMD 108 (129)
Q Consensus 29 lKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~n~~~~~~ 108 (129)
..+|.+|+..|+|+.....++...+.-. + ..++|..--..|...++..+-.+.|++.+ . ...--.
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~~p--~----------~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~--l~~~~~ 75 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVETDP--D----------YVGTYYHLGKLYERLDRTDDAIDTYAQGI-E--VAREEG 75 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST--T----------CTHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH-h--hhhcCC
Confidence 3589999999999999988887776522 1 12355555668888899998888999874 2 333346
Q ss_pred ChHHHHHHHHHHHHH
Q psy3489 109 DPFIREHIEDLLRNI 123 (129)
Q Consensus 109 ~PfI~~~I~e~~~~~ 123 (129)
++.....+..++...
T Consensus 76 ~~~~~~~l~~~l~~~ 90 (100)
T 3ma5_A 76 TQKDLSELQDAKLKA 90 (100)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHc
Confidence 666666666666543
No 28
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=76.80 E-value=18 Score=28.11 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=44.3
Q ss_pred hhhhHHHhhch----------hhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy3489 28 NTKLGKLYFDR----------EDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELI 97 (129)
Q Consensus 28 nlKLakL~ld~----------~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i 97 (129)
...+|.+|... |+|......++...+... + ..+++..-..+|...++..+=.+.|++.
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p---~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP---R---------SEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT---T---------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC---C---------CHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 46678888888 999999888887776522 1 1145666667778888877766666665
Q ss_pred Hhhhc------------------ccccCCChHHHHHHHHHHHHHhhh
Q psy3489 98 QVKSS------------------EQNIMDDPFIREHIEDLLRNIRTQ 126 (129)
Q Consensus 98 ~~~~n------------------~~~~~~~PfI~~~I~e~~~~~r~~ 126 (129)
+ ..+ ...+-.+|.+...+.++++..|.+
T Consensus 489 l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 534 (537)
T 3fp2_A 489 A-ILARTMDEKLQATTFAEAAKIQKRLRADPIISAKMELTLARYRAK 534 (537)
T ss_dssp H-HHC--CHHHHHHHHHHHHHHHHHHHHTC-----------------
T ss_pred H-HhCCCcHHHHHHHhHHHHHHHHHhccccHHHHHHHhhHHHHHhhc
Confidence 3 211 112346788999999999888865
No 29
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.52 E-value=1.9 Score=37.91 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHhhCCcccchh---hhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHH
Q psy3489 2 ELLQDFYETTLEALKDAKNDRLWF---KTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEI 78 (129)
Q Consensus 2 ~~l~~fYe~TL~aL~~~~NeRLWf---KtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEI 78 (129)
+.++.+...|++.| +.|+|| .++-+++++..+.+..+....+-..|+++|+....--|....+. ++-+.+
T Consensus 166 ~~l~~~nrrtlD~l----~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~---l~nllL 238 (523)
T 4b4t_S 166 NLLCYYNLRSLNLI----NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAM---LINLIL 238 (523)
T ss_dssp -----------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHH---HHHHHH
T ss_pred HHHHHHhHHhHHHH----HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHH---HHHHHH
Confidence 35677788888887 679999 78889999999888888888888888888876654444433333 344778
Q ss_pred HHHHhhh
Q psy3489 79 QMYTAQK 85 (129)
Q Consensus 79 Qmyt~~k 85 (129)
.+|.+.+
T Consensus 239 RnYL~~~ 245 (523)
T 4b4t_S 239 RDFLNNG 245 (523)
T ss_dssp HHHHHSS
T ss_pred HHHHccC
Confidence 8888765
No 30
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=74.79 E-value=10 Score=27.65 Aligned_cols=76 Identities=16% Similarity=0.343 Sum_probs=46.3
Q ss_pred hhhhhHHHhhchhhhh-------HHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHh
Q psy3489 27 TNTKLGKLYFDREDFN-------KLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQV 99 (129)
Q Consensus 27 tnlKLakL~ld~~ey~-------~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~ 99 (129)
..++.|+..++++++. |+..||.+|..++..+ -|| -+.|..||.-+..
T Consensus 35 ~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~eL~~sLd~e-----------------gei--------A~nL~~LY~y~~~ 89 (145)
T 1vh6_A 35 KFIRLAAQAIENDDMERKNENLIKAQNIIQELNFTLNRN-----------------IEL--------SASMGAMYDYMYR 89 (145)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHH--------TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHcCCc-----------------hHH--------HHHHHHHHHHHHH
Confidence 4577888888888887 5666777777776421 111 1234444443322
Q ss_pred hhcccccCCChHHHHHHHHHHHHHhhhh
Q psy3489 100 KSSEQNIMDDPFIREHIEDLLRNIRTQV 127 (129)
Q Consensus 100 ~~n~~~~~~~PfI~~~I~e~~~~~r~~~ 127 (129)
..-..++=.||.+..-+..++..||.-|
T Consensus 90 ~L~~Ani~~D~~~ldev~~ll~~LreaW 117 (145)
T 1vh6_A 90 RLVQANIKNDTGMLAEVEGYVTDFRDAW 117 (145)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 2223344457888888888888888654
No 31
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=74.55 E-value=13 Score=23.11 Aligned_cols=84 Identities=14% Similarity=0.138 Sum_probs=57.5
Q ss_pred hhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhccccc
Q psy3489 27 TNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQNI 106 (129)
Q Consensus 27 tnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~n~~~~ 106 (129)
....+|.+|+..|+|+.....++...+.-. . ..+++..--..|...++..+=.+.|++.. . ...-
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al-~--~~~~ 85 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDFDP---T---------YSVAWKWLGKTLQGQGDRAGARQAWESGL-A--AAQS 85 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-H--HHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCC---C---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H--hccc
Confidence 334689999999999999888877766521 1 13345555667888899999889999975 2 2222
Q ss_pred CCChHHHHHHHHHHHHHhh
Q psy3489 107 MDDPFIREHIEDLLRNIRT 125 (129)
Q Consensus 107 ~~~PfI~~~I~e~~~~~r~ 125 (129)
-.++....-+..+++.+..
T Consensus 86 ~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 86 RGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HTCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcc
Confidence 3466666666666666543
No 32
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=73.70 E-value=16 Score=23.81 Aligned_cols=91 Identities=4% Similarity=-0.058 Sum_probs=62.4
Q ss_pred CCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy3489 18 AKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELI 97 (129)
Q Consensus 18 ~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i 97 (129)
..+...|+ .+|.++...|+|+......+...+.-. + + .+++-.--..|...++..+=.+.|++.
T Consensus 49 p~~~~~~~----~lg~~~~~~g~~~~A~~~~~~al~~~p--~---~-------~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 49 HYDARYFL----GLGACRQSLGLYEQALQSYSYGALMDI--N---E-------PRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp TTCHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C-------THHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccHHHHH----HHHHHHHHHhhHHHHHHHHHHHHhcCC--C---C-------cHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555665 588999999999988877777666522 1 1 123444455788889999888999997
Q ss_pred HhhhcccccCCChHHHHHHHHHHHHHhhh
Q psy3489 98 QVKSSEQNIMDDPFIREHIEDLLRNIRTQ 126 (129)
Q Consensus 98 ~~~~n~~~~~~~PfI~~~I~e~~~~~r~~ 126 (129)
+ .. .+.--.++.++..+..++..|+.+
T Consensus 113 l-~~-~p~~~~~~~~~~~~~~~l~~l~~~ 139 (142)
T 2xcb_A 113 R-AL-AAAQPAHEALAARAGAMLEAVTAR 139 (142)
T ss_dssp H-HH-HHTCGGGHHHHHHHHHHHHHHHHH
T ss_pred H-Hh-CCCCcchHHHHHHHHHHHHHHHhc
Confidence 5 32 223344577888888888888754
No 33
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=72.09 E-value=28 Score=26.01 Aligned_cols=84 Identities=10% Similarity=0.009 Sum_probs=57.4
Q ss_pred HHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchH
Q psy3489 9 ETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNK 88 (129)
Q Consensus 9 e~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~k 88 (129)
+..++.....++......+...+|.+|+..|+|+.....+++..+.+.... .......++..-..+|...++..
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG------DRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC------CcHHHHHHHHHHHHHHHHCcCHH
Confidence 333333334444455566778899999999999999988888777654211 11234456666677888889988
Q ss_pred HHHHHHHHHH
Q psy3489 89 KLKKLYELIQ 98 (129)
Q Consensus 89 kLk~lY~~i~ 98 (129)
+=.+.|++.+
T Consensus 281 ~A~~~~~~al 290 (411)
T 4a1s_A 281 DAAEHYKRTL 290 (411)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888864
No 34
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=72.04 E-value=24 Score=25.22 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=67.1
Q ss_pred CcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 19 KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 19 ~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
.+...|......+|.++...|+|.+....+++..+... + -.+++..--..|...++..+=.+.|++..
T Consensus 266 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 266 SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP--D----------NVNALKDRAEAYLIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--c----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566777788899999999999999988888877632 1 13466666778889999999999999985
Q ss_pred hhhcccccCCChHHHHHHHHHHHHHh
Q psy3489 99 VKSSEQNIMDDPFIREHIEDLLRNIR 124 (129)
Q Consensus 99 ~~~n~~~~~~~PfI~~~I~e~~~~~r 124 (129)
+.+ =.||.++..+..+...+.
T Consensus 334 -~~~----p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 334 -EHN----ENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp -TTC----TTCHHHHHHHHHHHHHHH
T ss_pred -hcC----CCChHHHHHHHHHHHHHH
Confidence 322 357888888877766554
No 35
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=71.83 E-value=14 Score=22.32 Aligned_cols=89 Identities=16% Similarity=0.229 Sum_probs=64.2
Q ss_pred hhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhcccc
Q psy3489 26 KTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQN 105 (129)
Q Consensus 26 KtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~n~~~ 105 (129)
.....+|.+++..++|......+.......... +.......+++..--.+|...++..+-.+.|++.+ . .
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~--~-- 108 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-----REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL-A--E-- 108 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--H--
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-----chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-H--h--
Confidence 345678999999999999988887777654311 11112346677777788999999999999999985 3 2
Q ss_pred cCCChHHHHHHHHHHHHHhh
Q psy3489 106 IMDDPFIREHIEDLLRNIRT 125 (129)
Q Consensus 106 ~~~~PfI~~~I~e~~~~~r~ 125 (129)
-++|.+...+..+.+.++.
T Consensus 109 -~~~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 109 -HRTPDVLKKCQQAEKILKE 127 (131)
T ss_dssp -CCCHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHH
Confidence 2468888888887776653
No 36
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=68.93 E-value=23 Score=23.63 Aligned_cols=61 Identities=11% Similarity=0.163 Sum_probs=39.7
Q ss_pred hhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 26 KTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 26 KtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
-....+|++|++.|+|++..+.++...+.-. + -.+++..--.+|...++..+=...|++++
T Consensus 32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--~----------~~~a~~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 32 IKGFYFAKLYYEAKEYDLAKKYICTYINVQE--R----------DPKAHRFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----------CHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 3445689999999999988877777665522 1 13444444556666666666666666653
No 37
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=68.45 E-value=21 Score=23.13 Aligned_cols=81 Identities=10% Similarity=0.193 Sum_probs=53.5
Q ss_pred hhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhcccccC
Q psy3489 28 NTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQNIM 107 (129)
Q Consensus 28 nlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~n~~~~~ 107 (129)
-..+|.+|+..|+|+..-.......+-... +.. + -..+-.+|..-=..|...++..+=.+.|++++ .. -
T Consensus 45 ~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~~-~---~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal-~~-----~ 113 (127)
T 4gcn_A 45 YNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TRA-D---YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL-SE-----F 113 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTC-C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----S
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cch-h---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh-----C
Confidence 346899999999999887666554443221 111 1 11234555555567888899998889999985 32 3
Q ss_pred CChHHHHHHHHH
Q psy3489 108 DDPFIREHIEDL 119 (129)
Q Consensus 108 ~~PfI~~~I~e~ 119 (129)
++|-+...+.++
T Consensus 114 ~~~~~~~~l~~l 125 (127)
T 4gcn_A 114 RDPELVKKVKEL 125 (127)
T ss_dssp CCHHHHHHHHHH
T ss_pred cCHHHHHHHHHh
Confidence 578887777665
No 38
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=66.51 E-value=24 Score=22.98 Aligned_cols=77 Identities=13% Similarity=0.103 Sum_probs=53.8
Q ss_pred hhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhcccccC
Q psy3489 28 NTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQNIM 107 (129)
Q Consensus 28 nlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~n~~~~~ 107 (129)
...+|.+|+..|+|...........+.-. .-.+.|-.--..|...++..+=.+.|++.+ +.+ =
T Consensus 50 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al-~l~----P 112 (126)
T 4gco_A 50 YSNRAACLTKLMEFQRALDDCDTCIRLDS------------KFIKGYIRKAACLVAMREWSKAQRAYEDAL-QVD----P 112 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC----T
T ss_pred HHHHhhHHHhhccHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHC----c
Confidence 34589999999999888766665554311 113456666678888999999899999985 322 2
Q ss_pred CChHHHHHHHHHHH
Q psy3489 108 DDPFIREHIEDLLR 121 (129)
Q Consensus 108 ~~PfI~~~I~e~~~ 121 (129)
.||.++..+.+|||
T Consensus 113 ~~~~a~~~l~~~lr 126 (126)
T 4gco_A 113 SNEEAREGVRNCLR 126 (126)
T ss_dssp TCHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHhcC
Confidence 56778887777764
No 39
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=63.41 E-value=62 Score=26.69 Aligned_cols=89 Identities=11% Similarity=0.089 Sum_probs=60.5
Q ss_pred chhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhc
Q psy3489 23 LWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSS 102 (129)
Q Consensus 23 LWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~n 102 (129)
-...+--.||.+|.++|+|++.....++..+--..--|.+-+.-++.+.-+ -..|..+++..+=..+|++++.-..
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL----a~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL----GRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH----HHHHHhccCHHHHHHHHHHHHHHHH
Confidence 345677789999999999999998777666554444466666655544433 3468889999988889999641111
Q ss_pred ccccCCChHHHHH
Q psy3489 103 EQNIMDDPFIREH 115 (129)
Q Consensus 103 ~~~~~~~PfI~~~ 115 (129)
..-=-.||.+++.
T Consensus 414 ~~lG~~Hp~~~~l 426 (433)
T 3qww_A 414 VAHGKDHPYISEI 426 (433)
T ss_dssp HHTCTTCHHHHHH
T ss_pred HHcCCCChHHHHH
Confidence 1111479988763
No 40
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=61.29 E-value=9.2 Score=29.23 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=20.5
Q ss_pred hhhhHHHhhchhhhhHHHHHHHHHHH
Q psy3489 28 NTKLGKLYFDREDFNKLSRILKQLHQ 53 (129)
Q Consensus 28 nlKLakL~ld~~ey~~l~~~l~~L~~ 53 (129)
+++-.+=++++++|+.+.++++.++.
T Consensus 10 ~l~~L~~~~~~~d~~~~~~lL~~lk~ 35 (229)
T 4b0z_A 10 DLNHLADLYDRKDWNACKKELLKLKV 35 (229)
T ss_dssp CSHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35555667789999999999998864
No 41
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=56.28 E-value=40 Score=22.12 Aligned_cols=87 Identities=6% Similarity=0.046 Sum_probs=59.1
Q ss_pred cchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhh
Q psy3489 22 RLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKS 101 (129)
Q Consensus 22 RLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~ 101 (129)
.....+...+|..|+..|+|...........+... + -.+.|-.--..|...++...=.+.|++.+ +.
T Consensus 60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p--~----------~~~a~~~~g~~~~~~g~~~~A~~~~~~al-~l 126 (162)
T 3rkv_A 60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE--T----------NEKALFRRAKARIAAWKLDEAEEDLKLLL-RN 126 (162)
T ss_dssp HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--T----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--c----------chHHHHHHHHHHHHHhcHHHHHHHHHHHH-hc
Confidence 34455677899999999999988877766665521 1 13455555678888999998888899985 32
Q ss_pred cccccCCCh-HHHHHHHHHHHHHhh
Q psy3489 102 SEQNIMDDP-FIREHIEDLLRNIRT 125 (129)
Q Consensus 102 n~~~~~~~P-fI~~~I~e~~~~~r~ 125 (129)
+. .+| -|+..+..+...++.
T Consensus 127 ~p----~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 127 HP----AAASVVAREMKIVTERRAE 147 (162)
T ss_dssp CG----GGHHHHHHHHHHHHHHHHH
T ss_pred CC----CCHHHHHHHHHHHHHHHHH
Confidence 21 345 666666666665543
No 42
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=55.93 E-value=33 Score=21.05 Aligned_cols=71 Identities=10% Similarity=0.033 Sum_probs=50.1
Q ss_pred CcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 19 KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 19 ~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
.+....-.....+|.+++..|+|+.....+..+...-. +. ....+++-.--..|...++..+=...|+++.
T Consensus 33 p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p--~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 33 PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP--TH-------DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TS-------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC--CC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333334556789999999999999988888777532 11 1234555555567888999999899999985
No 43
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=52.77 E-value=47 Score=21.90 Aligned_cols=88 Identities=6% Similarity=-0.041 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhh
Q psy3489 6 DFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQK 85 (129)
Q Consensus 6 ~fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~k 85 (129)
.+|+..++..+..++......+...+|.++...|+|+.....+.+....+... | +++ .....++..--.+|...+
T Consensus 47 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~---~~~~~~~~~lg~~~~~~g 121 (203)
T 3gw4_A 47 ASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-P-EDP---LAASANAYEVATVALHFG 121 (203)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-C-CCH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-C-ccH---HHHHHHHHHHHHHHHHhC
Confidence 45666666666666666667788889999999999999988888777766521 1 111 123445555566788888
Q ss_pred chHHHHHHHHHHH
Q psy3489 86 NNKKLKKLYELIQ 98 (129)
Q Consensus 86 n~kkLk~lY~~i~ 98 (129)
+..+=...|++.+
T Consensus 122 ~~~~A~~~~~~al 134 (203)
T 3gw4_A 122 DLAGARQEYEKSL 134 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8888888888874
No 44
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=51.16 E-value=56 Score=22.38 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=59.0
Q ss_pred hCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q psy3489 17 DAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEL 96 (129)
Q Consensus 17 ~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~ 96 (129)
+.+|-..|+ .+|.+|...|+|+..-...+...+--. + + .+++----..|...++...=.+.|++
T Consensus 66 ~P~~~~~~~----~lg~~~~~~g~~~~Ai~~~~~al~l~P--~---~-------~~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 66 DFYNVDYIM----GLAAIYQIKEQFQQAADLYAVAFALGK--N---D-------YTPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp CTTCHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHSS--S---C-------CHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHH----HHHHHHHHHccHHHHHHHHHHHHhhCC--C---C-------cHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555665 378888888888888877766665532 1 1 13444445577888999988899999
Q ss_pred HHhhhcccccCCChHHHHHHHHHHHHH
Q psy3489 97 IQVKSSEQNIMDDPFIREHIEDLLRNI 123 (129)
Q Consensus 97 i~~~~n~~~~~~~PfI~~~I~e~~~~~ 123 (129)
.+ +. -+||-+++-.++++..|
T Consensus 130 al-~l-----~~~~~~~~~A~~ll~~l 150 (151)
T 3gyz_A 130 VI-QH-----SNDEKLKIKAQSYLDAI 150 (151)
T ss_dssp HH-HH-----CCCHHHHHHHHHHHHHH
T ss_pred HH-Hh-----CCCHHHHHHHHHHHHhh
Confidence 85 32 36777999999998875
No 45
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=49.91 E-value=41 Score=25.54 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=29.1
Q ss_pred chhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q psy3489 37 DREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEL 96 (129)
Q Consensus 37 d~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~ 96 (129)
+.+|.+.......+|+..-.. ...++.+-.|+.|+=|=++..++|.....-..+.
T Consensus 68 ~~~D~~~F~~~~~qLk~~Y~~-----~~~~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~ 122 (229)
T 4b0z_A 68 QTCDIESFARYASQVIPFYHD-----SLVPSSRMGLVTGLNLLYLLSENRIAEFHTALES 122 (229)
T ss_dssp HTTCHHHHHHHHHHHHHHHSS-----CCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHc-----cCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHh
Confidence 444444445555555554331 1122346678888777666666666654443333
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=49.81 E-value=52 Score=21.63 Aligned_cols=57 Identities=12% Similarity=0.080 Sum_probs=34.7
Q ss_pred hhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy3489 29 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELI 97 (129)
Q Consensus 29 lKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i 97 (129)
..+|..|..+|+|++.....++..+.-. + -.+++..-...|...++..+-.+.|++.
T Consensus 9 ~~lG~~~~~~g~~~~A~~~~~~al~~~p--~----------~~~~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 9 MDIGDKKRTKGDFDGAIRAYKKVLKADP--N----------NVETLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT--T----------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----------CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4588888888888888877776665421 1 1233333344566666666555555554
No 47
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=48.37 E-value=76 Score=23.08 Aligned_cols=69 Identities=4% Similarity=-0.001 Sum_probs=51.4
Q ss_pred hhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 25 FKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 25 fKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
..+...+|.+|.+.|+|++.....++..+.++...+ -......+|.---..|.+.++..+=.+.|++++
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-----NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-----chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 446778999999999999998888777665542211 122456677777788999999998888888864
No 48
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=48.00 E-value=68 Score=22.40 Aligned_cols=88 Identities=14% Similarity=0.144 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhC--CcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhh
Q psy3489 7 FYETTLEALKDA--KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQ 84 (129)
Q Consensus 7 fYe~TL~aL~~~--~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~ 84 (129)
.|+..++..+.. .+......+...+|.++...|+|++....+.+..+.+....|.++ .....++..-..+|...
T Consensus 91 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~~~~~la~~~~~~ 166 (311)
T 3nf1_A 91 LLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH----PDVAKQLNNLALLCQNQ 166 (311)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHHHHc
Confidence 344444433332 444556677788999999999999999888887776642212111 23556666677788999
Q ss_pred hchHHHHHHHHHHH
Q psy3489 85 KNNKKLKKLYELIQ 98 (129)
Q Consensus 85 kn~kkLk~lY~~i~ 98 (129)
++..+-.+.|++..
T Consensus 167 ~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 167 GKYEEVEYYYQRAL 180 (311)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99998888888874
No 49
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=47.62 E-value=88 Score=26.23 Aligned_cols=88 Identities=7% Similarity=0.053 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhh--CCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHh
Q psy3489 6 DFYETTLEALKD--AKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTA 83 (129)
Q Consensus 6 ~fYe~TL~aL~~--~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~ 83 (129)
.+|+-.|+..+. ..+..--..+-.+||.+|..+|+|+...+.+++-.+-....-|.|-+ ...|+.++.-|.+.+
T Consensus 372 ~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp----~~~~~~~~l~~~~~e 447 (490)
T 3n71_A 372 HYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP----ITKDLEAMRMQTEME 447 (490)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHHHH
Confidence 344444444331 12333445567789999999999999998876655443333344333 355666777777777
Q ss_pred hhchHHHHHHHHHH
Q psy3489 84 QKNNKKLKKLYELI 97 (129)
Q Consensus 84 ~kn~kkLk~lY~~i 97 (129)
++-.+.=-.+|+++
T Consensus 448 ~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 448 LRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66555555666664
No 50
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=46.40 E-value=44 Score=19.73 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=53.4
Q ss_pred hhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHH-HHHHHHHHHHhhhchHHHHHHHHHHHhhhcccccC
Q psy3489 29 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLE-IYALEIQMYTAQKNNKKLKKLYELIQVKSSEQNIM 107 (129)
Q Consensus 29 lKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLE-iyALEIQmyt~~kn~kkLk~lY~~i~~~~n~~~~~ 107 (129)
+..|..++..|+|.+.....++..+.-. ++ .+ ++-.--..|...++..+=.+.|++++ +.+ .
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~--p-- 66 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP-----VG-------KDEAYYLMGNAYRKLGDWQKALNNYQSAI-ELN--P-- 66 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS-----ST-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC--T--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-----Cc-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC--C--
Confidence 5689999999999999988888776522 11 23 55555567888899999899999985 322 2
Q ss_pred CChHHH--HHHHHHHHHH
Q psy3489 108 DDPFIR--EHIEDLLRNI 123 (129)
Q Consensus 108 ~~PfI~--~~I~e~~~~~ 123 (129)
.+|... +...+++...
T Consensus 67 ~~~~~~~~~~~~~a~~~~ 84 (99)
T 2kc7_A 67 DSPALQARKMVMDILNFY 84 (99)
T ss_dssp TSTHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 344444 6666665543
No 51
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=45.37 E-value=52 Score=20.34 Aligned_cols=84 Identities=7% Similarity=-0.058 Sum_probs=55.9
Q ss_pred hhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhc--cc
Q psy3489 27 TNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSS--EQ 104 (129)
Q Consensus 27 tnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~n--~~ 104 (129)
....+|.+++..|+|+......+...+.-. + -.+++-.--..|...++..+=.+.|++.+ ..+ ..
T Consensus 40 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~---------~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~ 106 (126)
T 3upv_A 40 GYSNRAAALAKLMSFPEAIADCNKAIEKDP---N---------FVRAYIRKATAQIAVKEYASALETLDAAR-TKDAEVN 106 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---C---------cHHHHHHHHHHHHHHhCHHHHHHHHHHHH-HhCcccC
Confidence 445689999999999998877776665521 1 13445555667888899998888899875 322 11
Q ss_pred ccCCChHHHHHHHHHHHHH
Q psy3489 105 NIMDDPFIREHIEDLLRNI 123 (129)
Q Consensus 105 ~~~~~PfI~~~I~e~~~~~ 123 (129)
..-.+|.+...+..+...|
T Consensus 107 ~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 107 NGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp TTTTHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHhh
Confidence 2234567777777766544
No 52
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=45.25 E-value=69 Score=21.66 Aligned_cols=58 Identities=7% Similarity=-0.011 Sum_probs=31.1
Q ss_pred hhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 29 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 29 lKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
..+|.+++..|+|......+++..+... ...+++..-...|...++..+-.+.|++++
T Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~al~~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 177 SNRAAALAKLMSFPEAIADCNKAIEKDP------------NFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCH------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455555555555555555544444321 012444455556666777776666677653
No 53
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=43.22 E-value=70 Score=21.18 Aligned_cols=91 Identities=10% Similarity=0.021 Sum_probs=57.5
Q ss_pred hCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q psy3489 17 DAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEL 96 (129)
Q Consensus 17 ~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~ 96 (129)
+..+...|+ .+|.++...|+|+......+...+.-. + + .+++-.--..|...++..+=.+.|++
T Consensus 51 ~p~~~~~~~----~lg~~~~~~g~~~~A~~~~~~al~l~p--~---~-------~~~~~~lg~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 51 DHYDSRFFL----GLGACRQAMGQYDLAIHSYSYGAVMDI--X---E-------PRFPFHAAECLLQXGELAEAESGLFL 114 (148)
T ss_dssp CTTCHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHST--T---C-------THHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcccHHHHH----HHHHHHHHHhhHHHHHHHHHHHHhcCC--C---C-------chHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344556664 589999999999988877777665521 1 1 12333334567888898888888999
Q ss_pred HHhhhcccccCCChHHHHHHHHHHHHHhh
Q psy3489 97 IQVKSSEQNIMDDPFIREHIEDLLRNIRT 125 (129)
Q Consensus 97 i~~~~n~~~~~~~PfI~~~I~e~~~~~r~ 125 (129)
.+ +.+ +..-..+.+++.++.++..++.
T Consensus 115 al-~~~-p~~~~~~~~~~~~~~~l~~l~~ 141 (148)
T 2vgx_A 115 AQ-ELI-ANXPEFXELSTRVSSMLEAIKL 141 (148)
T ss_dssp HH-HHH-TTCGGGHHHHHHHHHHHHHC--
T ss_pred HH-HHC-cCCCcchHHHHHHHHHHHHHHh
Confidence 75 322 2222335677777777776653
No 54
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=42.79 E-value=66 Score=22.65 Aligned_cols=70 Identities=4% Similarity=-0.012 Sum_probs=43.5
Q ss_pred hhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy3489 28 NTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELI 97 (129)
Q Consensus 28 nlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i 97 (129)
...+|.+++..|+|......+++....-....+.++...+....+++..-...|...++..+-.++|++.
T Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3457888888888888887777666554322111111112235667777778888888888777777654
No 55
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=42.66 E-value=98 Score=22.72 Aligned_cols=80 Identities=8% Similarity=-0.070 Sum_probs=52.0
Q ss_pred CcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 19 KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 19 ~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
.+..+| +.+|.++...|++++...+.......|..+ +. ...+++..-++++...++......+|++..
T Consensus 201 ~~~~~~----~~~~~~~~~~g~~~~A~~~~~~al~~~~l~-----p~---~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 201 DIPEYV----LAYIDYLSHLNEDNNTRVLFERVLTSGSLP-----PE---KSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp TCHHHH----HHHHHHHHTTCCHHHHHHHHHHHHHSSSSC-----GG---GCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CcHHHH----HHHHHHHHHCCCHHHHHHHHHHHHhccCCC-----HH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666 567888888899988888877776654211 11 123556666777788888888889999875
Q ss_pred hhhcccccCCChHH
Q psy3489 99 VKSSEQNIMDDPFI 112 (129)
Q Consensus 99 ~~~n~~~~~~~PfI 112 (129)
+ ..+.-..++++
T Consensus 269 -~-~~p~~~~~~~~ 280 (308)
T 2ond_A 269 -T-AFREEYEGKET 280 (308)
T ss_dssp -H-HTTTTTSSCHH
T ss_pred -H-HcccccccchH
Confidence 3 23333344544
No 56
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.63 E-value=49 Score=27.30 Aligned_cols=73 Identities=11% Similarity=0.117 Sum_probs=52.7
Q ss_pred ccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 21 DRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 21 eRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
.+.=+-.-+.-.+++++.++|.++..+++.+....-... ..-..-+.+|-+-+.|+...+++..--.-|..+.
T Consensus 173 ~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-----~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 173 MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP-----KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-----CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-----CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344455677889999999999999999998765432111 1123567788899999999998887666666653
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=42.30 E-value=80 Score=21.59 Aligned_cols=27 Identities=7% Similarity=0.064 Sum_probs=13.4
Q ss_pred hhhhHHHhhchhhhhHHHHHHHHHHHh
Q psy3489 28 NTKLGKLYFDREDFNKLSRILKQLHQS 54 (129)
Q Consensus 28 nlKLakL~ld~~ey~~l~~~l~~L~~~ 54 (129)
...+|.+++..|+|++....+++..+.
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 144 FENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 334555555555555555554444433
No 58
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=42.18 E-value=1e+02 Score=22.76 Aligned_cols=87 Identities=8% Similarity=0.082 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhh
Q psy3489 6 DFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQK 85 (129)
Q Consensus 6 ~fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~k 85 (129)
..|+..++.....++.+....+..++|.+|...|+|++.....++....+...+. . ......+-.....|...+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~----~~~~~~~~~~g~~~~~~g 209 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN--Y----PTCYKKCIAQVLVQLHRA 209 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--H----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--h----hHHHHHHHHHHHHHHHcC
Confidence 4556666655555555566778888999999999999988877776665542111 0 112234444455677778
Q ss_pred chHHHHHHHHHHH
Q psy3489 86 NNKKLKKLYELIQ 98 (129)
Q Consensus 86 n~kkLk~lY~~i~ 98 (129)
+..+-...|++.+
T Consensus 210 ~~~~A~~~~~~al 222 (307)
T 2ifu_A 210 DYVAAQKCVRESY 222 (307)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh
Confidence 8888888888873
No 59
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=42.14 E-value=50 Score=19.22 Aligned_cols=78 Identities=13% Similarity=0.100 Sum_probs=54.8
Q ss_pred hhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhcccc
Q psy3489 26 KTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQN 105 (129)
Q Consensus 26 KtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~n~~~ 105 (129)
.....+|.+++..++|+.....+++..+... . -.+++..-...|...++..+-.+.|+++. ..+
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~--- 102 (118)
T 1elw_A 39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP---D---------WGKGYSRKAAALEFLNRFEEAKRTYEEGL-KHE--- 102 (118)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---T---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTC---
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCc---c---------cHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HcC---
Confidence 3556689999999999999888887776532 0 13455566667888999999899999985 311
Q ss_pred cCCChHHHHHHHHHH
Q psy3489 106 IMDDPFIREHIEDLL 120 (129)
Q Consensus 106 ~~~~PfI~~~I~e~~ 120 (129)
-.+|.+...+.++.
T Consensus 103 -~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 103 -ANNPQLKEGLQNME 116 (118)
T ss_dssp -TTCHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHhh
Confidence 24676666655543
No 60
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=41.64 E-value=92 Score=22.09 Aligned_cols=63 Identities=0% Similarity=-0.018 Sum_probs=49.9
Q ss_pred hhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 28 NTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 28 nlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
.+.+|.+++..|+|......++....... .......+++..-...|...++..+-.+.|+++.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEP--------SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC--------SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45679999999999999998888877643 1223556667777788999999999999999985
No 61
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=41.33 E-value=86 Score=21.65 Aligned_cols=67 Identities=10% Similarity=0.012 Sum_probs=39.1
Q ss_pred CcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy3489 19 KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELI 97 (129)
Q Consensus 19 ~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i 97 (129)
.+..........+|.++...|+|++....+....+.... ..+++..--.+|...++..+=.+.|+++
T Consensus 68 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 68 NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------------cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 444454555666777777777777776666655554220 1134444455666667766666666665
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=41.02 E-value=1.1e+02 Score=22.88 Aligned_cols=86 Identities=10% Similarity=0.034 Sum_probs=58.3
Q ss_pred HHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhch
Q psy3489 8 YETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNN 87 (129)
Q Consensus 8 Ye~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~ 87 (129)
|+..++.++..+++.....+...+|.+|...|+|+.......+-.+.+...++ . ......++..--..|...++.
T Consensus 126 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---~--~~~~~~~~~~lg~~~~~~g~~ 200 (383)
T 3ulq_A 126 FKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA---Y--NIRLLQCHSLFATNFLDLKQY 200 (383)
T ss_dssp HHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST---T--HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc---c--hHHHHHHHHHHHHHHHHhcCH
Confidence 33333333344555556678889999999999999988887777666653321 0 122345565666788889999
Q ss_pred HHHHHHHHHHH
Q psy3489 88 KKLKKLYELIQ 98 (129)
Q Consensus 88 kkLk~lY~~i~ 98 (129)
.+=.+.|++++
T Consensus 201 ~~A~~~~~~al 211 (383)
T 3ulq_A 201 EDAISHFQKAY 211 (383)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888888874
No 63
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.61 E-value=80 Score=24.77 Aligned_cols=77 Identities=16% Similarity=0.268 Sum_probs=40.6
Q ss_pred hchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhcccccCCChHHHHH
Q psy3489 36 FDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQNIMDDPFIREH 115 (129)
Q Consensus 36 ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~n~~~~~~~PfI~~~ 115 (129)
++.+|++...+...+|+.--.. +.+...++..-.|+.|+=+=++..+++...+-...+.+- .....+-.||+|.-.
T Consensus 70 i~~~D~~~F~~~~~QLk~~Y~d--~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~--~~~~~~~~d~~Ik~a 145 (274)
T 4b4t_T 70 IQTFNFDSFENYFNQLKPYYFS--NNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLD--KHIKNLEDDSLLSYP 145 (274)
T ss_dssp SSCSSHHHHHHHHHHHHHHTTT--TSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSS--CSSSTTTCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHh--hhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcc--hhhHhHhcChHHHHH
Confidence 3445555555555555554321 222223345677888888866666676665554444431 112345556666544
Q ss_pred H
Q psy3489 116 I 116 (129)
Q Consensus 116 I 116 (129)
+
T Consensus 146 l 146 (274)
T 4b4t_T 146 I 146 (274)
T ss_dssp H
T ss_pred H
Confidence 3
No 64
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=40.00 E-value=1.6e+02 Score=24.54 Aligned_cols=94 Identities=3% Similarity=-0.104 Sum_probs=61.2
Q ss_pred hhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhcc
Q psy3489 24 WFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSE 103 (129)
Q Consensus 24 WfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~n~ 103 (129)
-..+--.||.+|.++|+|++.....++..+-...--|.+-+.-++ .|.---..|..+++..+=..+|++++.-...
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~----~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~ 425 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM----AVMRAGLTNWHAGHIEVGHGMICKAYAILLV 425 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 466677899999999999999887766554444333555555333 3334445788899999888899986411111
Q ss_pred cccCCChHHHHHHHHHHHH
Q psy3489 104 QNIMDDPFIREHIEDLLRN 122 (129)
Q Consensus 104 ~~~~~~PfI~~~I~e~~~~ 122 (129)
.-=-.||.+.+.. +++..
T Consensus 426 ~lG~~Hp~~~~~~-~~l~~ 443 (490)
T 3n71_A 426 THGPSHPITKDLE-AMRMQ 443 (490)
T ss_dssp HTCTTSHHHHHHH-HHHHH
T ss_pred HhCCCChHHHHHH-HHHHH
Confidence 1124799988743 44433
No 65
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=39.98 E-value=29 Score=24.67 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy3489 71 LEIYALEIQMYTAQKNNKKLKKLYELI 97 (129)
Q Consensus 71 LEiyALEIQmyt~~kn~kkLk~lY~~i 97 (129)
=||-+|+-|+-+..|-+.|||++|.+-
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~k 30 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTK 30 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378889999999999999999999884
No 66
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=39.56 E-value=1.1e+02 Score=22.26 Aligned_cols=69 Identities=4% Similarity=0.006 Sum_probs=49.9
Q ss_pred hhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 25 FKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 25 fKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
..+...+|.+|.+.|+|++......+....++...+ + ......+|..--..|..+++..+=.+.|++++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~--~---~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--N---EEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc--c---ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 567778999999999999998888777654432211 1 11123566667778899999998888888864
No 67
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=38.95 E-value=99 Score=21.71 Aligned_cols=58 Identities=12% Similarity=-0.062 Sum_probs=37.1
Q ss_pred hhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 29 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 29 lKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
..+|.++...|+|+.....+++..+... ...+++..-...|...++..+-.+.|+++.
T Consensus 59 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 116 (327)
T 3cv0_A 59 RSLGLTQAENEKDGLAIIALNHARMLDP------------KDIAVHAALAVSHTNEHNANAALASLRAWL 116 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCc------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3467777777777777666666555421 013455555667777778777777787774
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=38.67 E-value=73 Score=20.08 Aligned_cols=62 Identities=10% Similarity=0.112 Sum_probs=41.7
Q ss_pred hhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 25 FKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 25 fKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
..+...+|.++...|+|......++...+.... ..+++..-...|...++..+-.+.|+++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 103 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPD------------NVKVATVLGLTYVQVQKYDLAVPLLIKVA 103 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345567899999999999998888877766321 12344444556666677776666677663
No 69
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=37.77 E-value=91 Score=20.93 Aligned_cols=60 Identities=7% Similarity=0.076 Sum_probs=40.3
Q ss_pred hhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 27 TNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 27 tnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
+...+|.++...|+|+.....+++..+.... -.+++..-..+|...++..+-.+.|+++.
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGME------------NGDLFYMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC------------SHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4456788888888888888877777665431 02345555566777777777777777764
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=36.94 E-value=78 Score=19.93 Aligned_cols=58 Identities=9% Similarity=-0.019 Sum_probs=35.2
Q ss_pred hhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 29 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 29 lKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
..+|.++...|+|++....+.+..+... + ..+++..-..+|...++..+-.+.|++..
T Consensus 114 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 114 FRLGVALDNLGRFDEAIDSFKIALGLRP---N---------EGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCc---c---------chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456666666666666666655555431 0 13455555667777777777777777764
No 71
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=36.81 E-value=29 Score=21.38 Aligned_cols=33 Identities=3% Similarity=0.059 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhh--cccccCCChHHHHHHHHHHH
Q psy3489 88 KKLKKLYELIQVKS--SEQNIMDDPFIREHIEDLLR 121 (129)
Q Consensus 88 kkLk~lY~~i~~~~--n~~~~~~~PfI~~~I~e~~~ 121 (129)
+.+.+..+.+. .+ +.+..+.||+|+..|.-|+.
T Consensus 21 P~~~~~lq~i~-~NP~~~~~~~~dP~v~~~~~~L~~ 55 (62)
T 2lnm_A 21 PRVQAALMECS-ENPMNIMKYQNDKEVMDVFNKISQ 55 (62)
T ss_dssp HHHHHHHHHHT-TCGGGHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HCHHHHHHHHhChHHHHHHHHHHH
Confidence 44555555553 21 34456899999999988864
No 72
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=35.68 E-value=1.1e+02 Score=22.63 Aligned_cols=83 Identities=22% Similarity=0.329 Sum_probs=52.4
Q ss_pred hHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHh------------------------hhc
Q psy3489 31 LGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTA------------------------QKN 86 (129)
Q Consensus 31 LakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~------------------------~kn 86 (129)
+|++++-.++|.+...-+.+=-+.|... + .+.-...=.|.+=.+|.+- .+|
T Consensus 20 lGr~~~~~~~y~~A~~~L~~A~~~~~~~-~----~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~~~~~~y~~L~~Avr~Gd 94 (203)
T 3t5x_A 20 VGRKAMFDSDFKQAEEYLSFAFEHCHRS-S----QKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAEVTRAVSEGN 94 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCTT-C----HHHHHHHHHHHHHHHHHTTCEECHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHCCHh-H----HHHHHHHHHHHHHHHHHcCCCCCHHHhhhCchhHHHHHHHHHHhCC
Confidence 7899999999999998888888888732 1 1111222233333333321 122
Q ss_pred hHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHHHhhhhc
Q psy3489 87 NKKLKKLYELIQVKSSEQNIMDDPFIREHIEDLLRNIRTQVM 128 (129)
Q Consensus 87 ~kkLk~lY~~i~~~~n~~~~~~~PfI~~~I~e~~~~~r~~~~ 128 (129)
.. .|++++.+ | .++|++..|-.++.++|..|+
T Consensus 95 l~----~f~~~l~~-~-----~~~f~~~~~~lll~rlr~~v~ 126 (203)
T 3t5x_A 95 LL----LLHEALAK-H-----EAFFIRCGIFLILEKLKIITY 126 (203)
T ss_dssp HH----HHHHHHHH-T-----HHHHHHHTCHHHHHTHHHHHH
T ss_pred HH----HHHHHHHH-h-----HHHHHHCChHHHHHHHHHHHH
Confidence 22 25556422 3 369999999999999998874
No 73
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.54 E-value=77 Score=19.46 Aligned_cols=88 Identities=7% Similarity=-0.060 Sum_probs=55.6
Q ss_pred HhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHH
Q psy3489 15 LKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLY 94 (129)
Q Consensus 15 L~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY 94 (129)
++...++.........+|.+|+..++|.+....+......-. + -.+++..--.+|...++..+-.+.|
T Consensus 55 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~-------~~~~~~~~a~~~~~~~~~~~A~~~~ 122 (148)
T 2dba_A 55 LGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-----G-------DVKALYRRSQALEKLGRLDQAVLDL 122 (148)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-----C-------CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-----c-------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 333344333345666789999999999988877766655421 0 1344555566778888888888888
Q ss_pred HHHHhhhcccccCCChHHHHHHHHH
Q psy3489 95 ELIQVKSSEQNIMDDPFIREHIEDL 119 (129)
Q Consensus 95 ~~i~~~~n~~~~~~~PfI~~~I~e~ 119 (129)
++.+ +.+ =.+|.+...+.++
T Consensus 123 ~~al-~~~----p~~~~~~~~l~~~ 142 (148)
T 2dba_A 123 QRCV-SLE----PKNKVFQEALRNI 142 (148)
T ss_dssp HHHH-HHC----SSCHHHHHHHHHH
T ss_pred HHHH-HcC----CCcHHHHHHHHHH
Confidence 8885 322 2456666555544
No 74
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=34.66 E-value=71 Score=18.76 Aligned_cols=23 Identities=17% Similarity=0.520 Sum_probs=11.3
Q ss_pred hHHHhhchhhhhHHHHHHHHHHH
Q psy3489 31 LGKLYFDREDFNKLSRILKQLHQ 53 (129)
Q Consensus 31 LakL~ld~~ey~~l~~~l~~L~~ 53 (129)
+|.++...++|+.....+++...
T Consensus 41 ~a~~~~~~~~~~~A~~~~~~~~~ 63 (136)
T 2fo7_A 41 LGNAYYKQGDYDEAIEYYQKALE 63 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 45555555555555544444433
No 75
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=34.36 E-value=1.2e+02 Score=21.30 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=58.7
Q ss_pred cchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhh
Q psy3489 22 RLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKS 101 (129)
Q Consensus 22 RLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~ 101 (129)
.-|..+...+|.++...|+|+.....+++..+... + ..+++..-...|...++..+=.+.|++.+ ..
T Consensus 233 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~ 299 (330)
T 3hym_B 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP--Q----------NASTYSAIGYIHSLMGNFENAVDYFHTAL-GL 299 (330)
T ss_dssp TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--T----------CSHHHHHHHHHHHHHTCHHHHHHHHHTTT-TT
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc--c----------chHHHHHHHHHHHHhccHHHHHHHHHHHH-cc
Confidence 33455667899999999999999988888776532 1 13455556678888999998888999874 31
Q ss_pred cccccCCChHHHHHHHHHH
Q psy3489 102 SEQNIMDDPFIREHIEDLL 120 (129)
Q Consensus 102 n~~~~~~~PfI~~~I~e~~ 120 (129)
+ =.+|.....+-.++
T Consensus 300 ~----p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 300 R----RDDTFSVTMLGHCI 314 (330)
T ss_dssp C----SCCHHHHHHHHHHH
T ss_pred C----CCchHHHHHHHHHH
Confidence 1 34677777666655
No 76
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=34.08 E-value=82 Score=19.33 Aligned_cols=84 Identities=7% Similarity=-0.119 Sum_probs=56.1
Q ss_pred hhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhccccc
Q psy3489 27 TNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQNI 106 (129)
Q Consensus 27 tnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~n~~~~ 106 (129)
....+|.+++..++|+.....++...+... + ..+++..--..|...++..+=.+.|++.+........
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 112 (137)
T 3q49_B 45 YYTNRALCYLKMQQPEQALADCRRALELDG---Q---------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 112 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---h---------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHH
Confidence 455689999999999998887777766532 1 2345555666788889999888889987522212222
Q ss_pred CCChHHHHHHHHHHHH
Q psy3489 107 MDDPFIREHIEDLLRN 122 (129)
Q Consensus 107 ~~~PfI~~~I~e~~~~ 122 (129)
--++.|...+..+...
T Consensus 113 ~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 113 NFGDDIPSALRIAKKK 128 (137)
T ss_dssp CCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3367777666666543
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=33.95 E-value=1.5e+02 Score=22.26 Aligned_cols=86 Identities=13% Similarity=0.022 Sum_probs=56.4
Q ss_pred HHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhch
Q psy3489 8 YETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNN 87 (129)
Q Consensus 8 Ye~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~ 87 (129)
|+..++.++..+++.....+...+|.+|...|+|........+-.......++- ......++..--..|...++.
T Consensus 124 ~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~~lg~~y~~~~~~ 198 (378)
T 3q15_A 124 YREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY-----SIRTIQSLFVIAGNYDDFKHY 198 (378)
T ss_dssp HHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC-----HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc-----hhhHHHHHHHHHHHHHHhCCH
Confidence 333333334445555566778889999999999998887777666555422110 113455555556678888888
Q ss_pred HHHHHHHHHHH
Q psy3489 88 KKLKKLYELIQ 98 (129)
Q Consensus 88 kkLk~lY~~i~ 98 (129)
.+=.+.|++++
T Consensus 199 ~~A~~~~~~al 209 (378)
T 3q15_A 199 DKALPHLEAAL 209 (378)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888874
No 78
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=32.19 E-value=1.5e+02 Score=21.79 Aligned_cols=85 Identities=12% Similarity=0.063 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhc
Q psy3489 7 FYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKN 86 (129)
Q Consensus 7 fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn 86 (129)
.|+..++...+.++..-...+..++|.+|.. ++|++.....++-....... | + .....+++.---.+|...++
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~--~---~~~~~~~~~~lg~~~~~~g~ 170 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-E--R---LRQAAELIGKASRLLVRQQK 170 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-T--C---HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-C--C---hhHHHHHHHHHHHHHHHcCC
Confidence 3444444444444444445666778888887 88887776665555444311 1 1 11234445444567778888
Q ss_pred hHHHHHHHHHHH
Q psy3489 87 NKKLKKLYELIQ 98 (129)
Q Consensus 87 ~kkLk~lY~~i~ 98 (129)
..+=.+.|++++
T Consensus 171 ~~~A~~~~~~al 182 (307)
T 2ifu_A 171 FDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887777788764
No 79
>2cmp_A G1P, terminase small subunit; DNA packaging, DNA binding DO; 1.58A {Bacteriophage SF6}
Probab=31.98 E-value=7.8 Score=24.72 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.1
Q ss_pred hcccccCCChHHHHHHHHHH
Q psy3489 101 SSEQNIMDDPFIREHIEDLL 120 (129)
Q Consensus 101 ~n~~~~~~~PfI~~~I~e~~ 120 (129)
.+-+..+.+|.|...|+|++
T Consensus 43 ~~as~LL~~~~V~~~I~el~ 62 (63)
T 2cmp_A 43 AIGAENLQKPAIRARIDARL 62 (63)
T ss_dssp HHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHCchHHHHHHHHHh
Confidence 35677799999999999986
No 80
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=31.57 E-value=31 Score=21.91 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhh--cccc-cCCChHHHHHHHHHH
Q psy3489 90 LKKLYELIQVKS--SEQN-IMDDPFIREHIEDLL 120 (129)
Q Consensus 90 Lk~lY~~i~~~~--n~~~-~~~~PfI~~~I~e~~ 120 (129)
+.+..+.+. ++ +... .+.||+|+..|.-|+
T Consensus 34 ~~~~lq~i~-~NP~~i~~~~~~dPrv~~~l~~L~ 66 (71)
T 2llv_A 34 LVAKLIGYK-QNPQAIGQDLFTDPRLMTIMATLM 66 (71)
T ss_dssp HHHHHHHHH-HSCTTHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCHHHHHHHHhhCcHHHHHHHHHH
Confidence 445566653 22 4555 788999999998775
No 81
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=31.45 E-value=1.2e+02 Score=20.40 Aligned_cols=82 Identities=11% Similarity=-0.008 Sum_probs=57.9
Q ss_pred hhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhcccc
Q psy3489 26 KTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQN 105 (129)
Q Consensus 26 KtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~n~~~ 105 (129)
.+...+|.+++..++|............... + -.+++-.--..|...++..+=.+.|++.+ ..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~--- 152 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK--N----------NVKALYKLGVANMYFGFLEEAKENLYKAA-SLN--- 152 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--T----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHS---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--c----------cHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHC---
Confidence 4566799999999999999887777666522 0 12445555667888899998888899985 322
Q ss_pred cCCChHHHHHHHHHHHHHh
Q psy3489 106 IMDDPFIREHIEDLLRNIR 124 (129)
Q Consensus 106 ~~~~PfI~~~I~e~~~~~r 124 (129)
=.+|.++..+..+...+.
T Consensus 153 -p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 153 -PNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHHH
Confidence 246777777777766553
No 82
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=30.43 E-value=1.9e+02 Score=22.52 Aligned_cols=85 Identities=9% Similarity=0.035 Sum_probs=59.2
Q ss_pred chhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhc
Q psy3489 23 LWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSS 102 (129)
Q Consensus 23 LWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~n 102 (129)
.-..+...+|.+|+..++|.+.....+...+... + -.++|..--..|...++..+=.+.|++++ +.+
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al-~l~ 337 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP------S------NTKALYRRAQGWQGLKEYDQALADLKKAQ-EIA 337 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT------T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc------h------hHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhC
Confidence 3455667899999999999998877766665321 1 12444455567888899998888899985 322
Q ss_pred ccccCCChHHHHHHHHHHHHHh
Q psy3489 103 EQNIMDDPFIREHIEDLLRNIR 124 (129)
Q Consensus 103 ~~~~~~~PfI~~~I~e~~~~~r 124 (129)
=.+|.++..+..+...+.
T Consensus 338 ----P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 338 ----PEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp ----TTCHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHHH
Confidence 137888888887776654
No 83
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=29.96 E-value=89 Score=18.46 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=44.7
Q ss_pred hhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 28 NTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 28 nlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
...+|..++..|+|++....+........ . ..+++..-..+|...++..+-...|++++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDP---T---------NMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC---c---------cHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45689999999999999988888776632 1 13455555667888899998888898875
No 84
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=29.78 E-value=2.1e+02 Score=22.77 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=53.5
Q ss_pred cchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccc------------cchhHHHHHHHHHHHHHHh-hh--c
Q psy3489 22 RLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDL------------KKGTQLLEIYALEIQMYTA-QK--N 86 (129)
Q Consensus 22 RLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~------------~kgt~lLEiyALEIQmyt~-~k--n 86 (129)
.+++.+-..++..+++.|++..+-..+..+-..-. -++. -+-...+++|.---+.+.+ .+ =
T Consensus 168 ~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P----~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 168 EDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP----YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45566777788889999999888777666644321 1111 1112334444333332222 12 3
Q ss_pred hHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHHHh
Q psy3489 87 NKKLKKLYELIQVKSSEQNIMDDPFIREHIEDLLRNIR 124 (129)
Q Consensus 87 ~kkLk~lY~~i~~~~n~~~~~~~PfI~~~I~e~~~~~r 124 (129)
.+.++++|++|+ ......+.|--..-+.++..++.
T Consensus 244 ~~~l~~l~~~il---~~~~~~~~~~~~~~l~~i~~~L~ 278 (388)
T 2ff4_A 244 GPTLRALNERIL---RQQPLDAKKSAKTTAAGTVTVLD 278 (388)
T ss_dssp CHHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---cCCCCCCCCCCccccchhhhHhh
Confidence 457888999986 34555555555555555555543
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=29.73 E-value=1.7e+02 Score=21.57 Aligned_cols=88 Identities=7% Similarity=-0.096 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhc
Q psy3489 7 FYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKN 86 (129)
Q Consensus 7 fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn 86 (129)
.|+..+......++...-..+...+|.+++..|+|+......++..+.+....+.+.+ ....++..--..|...++
T Consensus 75 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 75 LMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP----MHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc----HHHHHHHHHHHHHHHhcC
Confidence 3444444444444433334556678999999999999988888777765532221111 122233333445666666
Q ss_pred hHHHHHHHHHHH
Q psy3489 87 NKKLKKLYELIQ 98 (129)
Q Consensus 87 ~kkLk~lY~~i~ 98 (129)
...=.+.|++.+
T Consensus 151 ~~~A~~~~~~al 162 (373)
T 1hz4_A 151 LDEAEASARSGI 162 (373)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666653
No 86
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=29.24 E-value=1.4e+02 Score=20.44 Aligned_cols=60 Identities=8% Similarity=-0.109 Sum_probs=40.2
Q ss_pred hhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 27 TNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 27 tnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
+...+|.++...|+|+.....++...+.... ..+++..-..+|...++..+-.+.|++..
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 138 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPT------------YNYAHLNRGIALYYGGRDKLAQDDLLAFY 138 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCcc------------ccHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3345778888888888777777666665321 12455555667778888888778888874
No 87
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=28.93 E-value=1.2e+02 Score=19.42 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=46.4
Q ss_pred hhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhcccccCCC
Q psy3489 30 KLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQNIMDD 109 (129)
Q Consensus 30 KLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~n~~~~~~~ 109 (129)
.||+.++..|+|++.-....+..+... . -.++|.---..|...++..+=.+.|++.+ +.+.....++
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p--------~----~~~~~~nlg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~ 79 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDP--------S----NITFYNNKAAVYFEEKKFAECVQFCEKAV-EVGRETRADY 79 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT--------T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--------C----CHHHHHhHHHHHHHhhhHHHHHHHHHHHH-HhCcccchhh
Confidence 589999999999998877776655432 1 13445555567888888888888888874 3333443444
Q ss_pred hH
Q psy3489 110 PF 111 (129)
Q Consensus 110 Pf 111 (129)
|.
T Consensus 80 ~~ 81 (127)
T 4gcn_A 80 KL 81 (127)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 88
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=28.84 E-value=1.4e+02 Score=20.47 Aligned_cols=87 Identities=10% Similarity=0.073 Sum_probs=57.8
Q ss_pred hhhhhhhHHHhhchhh---hhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhh
Q psy3489 25 FKTNTKLGKLYFDRED---FNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKS 101 (129)
Q Consensus 25 fKtnlKLakL~ld~~e---y~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~ 101 (129)
......+|.++...++ |+.....+.+..+.+... .++. ...+.++|..--.+|...++..+=.+.|++++ ..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~ 250 (272)
T 3u4t_A 176 YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG---GAKY-KDELIEANEYIAYYYTINRDKVKADAAWKNIL-AL 250 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG---GGGG-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH
T ss_pred hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc---cccc-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hc
Confidence 3445557888887777 766666666666555311 1222 45677888888889999999999999999985 32
Q ss_pred cccccCCChHHHHHHHHHH
Q psy3489 102 SEQNIMDDPFIREHIEDLL 120 (129)
Q Consensus 102 n~~~~~~~PfI~~~I~e~~ 120 (129)
+ =.+|..+..+..+.
T Consensus 251 ~----p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 251 D----PTNKKAIDGLKMKL 265 (272)
T ss_dssp C----TTCHHHHHHHC---
T ss_pred C----ccHHHHHHHhhhhh
Confidence 2 35777777665554
No 89
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=28.62 E-value=1.9e+02 Score=21.86 Aligned_cols=62 Identities=15% Similarity=0.048 Sum_probs=47.3
Q ss_pred hhhhhhhHHHhhc---hhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 25 FKTNTKLGKLYFD---REDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 25 fKtnlKLakL~ld---~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
......+|.+++. .|+|......++....... + ..+++..-.++|...++..+=.+.|++++
T Consensus 412 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~----------~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP--R----------SEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp SHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT--T----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc--c----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4466789999999 9999999988887776532 1 12456666778889999998888888874
No 90
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=28.06 E-value=73 Score=20.10 Aligned_cols=35 Identities=31% Similarity=0.523 Sum_probs=27.6
Q ss_pred hhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHH
Q psy3489 38 REDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIY 74 (129)
Q Consensus 38 ~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiy 74 (129)
..|..+-..+|.+||.... .|..|.++..++-||=
T Consensus 9 ~~El~kQe~lL~~LH~e~~--ag~~~~~~eE~lWeVQ 43 (56)
T 2kwh_A 9 KEEIRRQEFLLNSLHRDLQ--GGIKDLSKEERLWEVQ 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHTTC--SSCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--cCCCCchhHHHHHHHH
Confidence 3567788889999999876 4777888888888774
No 91
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=26.76 E-value=32 Score=23.25 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhhcccccCCChHHHHHHHH
Q psy3489 90 LKKLYELIQVKSSEQNIMDDPFIREHIED 118 (129)
Q Consensus 90 Lk~lY~~i~~~~n~~~~~~~PfI~~~I~e 118 (129)
++.=|+++ ...++.||-|+.++++
T Consensus 17 ~~~~~~~~-----~~~vl~dP~V~~Fl~~ 40 (106)
T 2k7r_A 17 FQKRLEQM-----KEKVMKDQDVQAFLKE 40 (106)
T ss_dssp HHHHHHHH-----HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHcCHHHHHHHHH
Confidence 44445554 4557999999998864
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=26.42 E-value=1.7e+02 Score=23.42 Aligned_cols=59 Identities=12% Similarity=0.026 Sum_probs=44.4
Q ss_pred hhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy3489 29 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELI 97 (129)
Q Consensus 29 lKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i 97 (129)
.-+|.++...|+++..-+.+.+.-.. | ++ ...+|.+++-+|+|...++...-+.++++.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~-----~---~~--~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDN-----D---EA--EGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTS-----S---CS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcc-----C---CC--cCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 56888888888888877665543221 1 11 358999999999999999988878887765
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=26.27 E-value=1.9e+02 Score=21.05 Aligned_cols=87 Identities=16% Similarity=0.020 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhh
Q psy3489 6 DFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQK 85 (129)
Q Consensus 6 ~fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~k 85 (129)
..|+..++...+.++......+..++|.+++..|+|++.-...++....+.... +..-+ .-+.|.--...|...+
T Consensus 139 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~--~~~~~~~lg~~~~~~g 213 (292)
T 1qqe_A 139 DCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR---LSQWS--LKDYFLKKGLCQLAAT 213 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT---TTGGG--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC---cccHH--HHHHHHHHHHHHHHcC
Confidence 345555554444444334456788999999999999999988888777654221 11001 1122222223455556
Q ss_pred chHHHHHHHHHH
Q psy3489 86 NNKKLKKLYELI 97 (129)
Q Consensus 86 n~kkLk~lY~~i 97 (129)
+...=...|++.
T Consensus 214 ~~~~A~~~~~~a 225 (292)
T 1qqe_A 214 DAVAAARTLQEG 225 (292)
T ss_dssp CHHHHHHHHHGG
T ss_pred CHHHHHHHHHHH
Confidence 666555556555
No 94
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=25.00 E-value=1.3e+02 Score=18.76 Aligned_cols=80 Identities=10% Similarity=0.068 Sum_probs=55.4
Q ss_pred hhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhccccc
Q psy3489 27 TNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQNI 106 (129)
Q Consensus 27 tnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~n~~~~ 106 (129)
-+..+|+.+++.++|.+...-+++-.+....++. .|...-+|+-.--..|.+.++..+=...|++.+ +..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-----~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al-~l~---- 76 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-----STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL-ELD---- 76 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC----
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-----CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH-hcC----
Confidence 4567999999999999999887776655432221 233445666666678889999999888999984 322
Q ss_pred CCChHHHHHH
Q psy3489 107 MDDPFIREHI 116 (129)
Q Consensus 107 ~~~PfI~~~I 116 (129)
-.||.++...
T Consensus 77 P~~~~~~~n~ 86 (104)
T 2v5f_A 77 PEHQRANGNL 86 (104)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHhhH
Confidence 3466664433
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=24.59 E-value=1.7e+02 Score=20.04 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=40.0
Q ss_pred hhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 29 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 29 lKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
..+|.+|...|+|++.....+...+.-. + -.+++..--.+|...++..+=.+.|++++
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p--~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 115 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAP--N----------NVDCLEACAEMQVCRGQEKDALRMYEKIL 115 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT--T----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCC--C----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3489999999999998888777766532 1 12445555566777777777777777764
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=21.64 E-value=2.1e+02 Score=19.80 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=48.7
Q ss_pred hhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 29 TKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 29 lKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
..+|.+|+.+|+|.......+++.+... + +...-+++..-...|.+.++...-.+.|+++.
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p---~------~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYP---D------TQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHST---T------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCc---C------CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4678999999999999988888887754 1 22455777777889999999999889898873
No 97
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=21.18 E-value=1.8e+02 Score=18.89 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=43.4
Q ss_pred hhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489 27 TNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ 98 (129)
Q Consensus 27 tnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~ 98 (129)
....+|.++...|+|++.-...++..+... . -.+++-.--..|...++..+=.+.|++++
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p---~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 109 AYYKLGLVYDSMGEHDKAIEAYEKTISIKP---G---------FIRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHhcc---h---------hhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345689999999999988877776665522 1 13445555567888999998888899985
No 98
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.61 E-value=3.3e+02 Score=21.85 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhCCcccchhhhhhhhHHHhh----chhhhhHHHHHHHHHHHhccCCCCCccccch-----hHHHHHHHH
Q psy3489 6 DFYETTLEALKDAKNDRLWFKTNTKLGKLYF----DREDFNKLSRILKQLHQSCQTDDGEDDLKKG-----TQLLEIYAL 76 (129)
Q Consensus 6 ~fYe~TL~aL~~~~NeRLWfKtnlKLakL~l----d~~ey~~l~~~l~~L~~~c~~~dg~dd~~kg-----t~lLEiyAL 76 (129)
+||+..+..|.+.-| -+|++.+.+ +..+.....+.|.++.+.+...++.....++ ...+-+-..
T Consensus 60 ~ly~~fi~~f~~kin-------~L~lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~ 132 (393)
T 4b4t_O 60 RLYDNFVSKFYDKIN-------QLSVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSE 132 (393)
T ss_dssp HHHHHHHHHHHHHSC-------SHHHHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-------HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHH
Confidence 455555554443222 156666544 4567777777787776666433322211111 134455555
Q ss_pred HHHHHHhhhchHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHH
Q psy3489 77 EIQMYTAQKNNKKLKKLYELIQVKSSEQNIMDDPFIREHIEDLLRN 122 (129)
Q Consensus 77 EIQmyt~~kn~kkLk~lY~~i~~~~n~~~~~~~PfI~~~I~e~~~~ 122 (129)
-..+|...++....+.+.++.-...+.. -=.||.+++..-++.-+
T Consensus 133 i~~~yl~~~d~~~a~~~l~~~~~~l~~~-~~~~~~v~~~~y~~~~~ 177 (393)
T 4b4t_O 133 IARTYLLKNDLVKARDLLDDLEKTLDKK-DSIPLRITNSFYSTNSQ 177 (393)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHS-CCSSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcc-CCccHHHHHHHHHHHHH
Confidence 5678888899998888887752111111 12478888777765544
Done!