RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3489
         (129 letters)



>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum)
           [TaxId: 3888]}
          Length = 210

 Score = 25.1 bits (54), Expect = 2.5
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 77  EIQMYTAQKNNKKLKKLYELIQVKSSEQNIMDDPFIREHIED 118
           +++         +L    E   V +S  N++  PF+RE + +
Sbjct: 137 KVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVN 178


>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 113

 Score = 23.6 bits (51), Expect = 5.6
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 51  LHQSC-QTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYEL 96
           +H +C  +    +DL++  Q L     EI+    Q   +K + L+ L
Sbjct: 59  VHLTCMSSKTAREDLERVVQKLFTPYTEIEAENEQ--VEKPRLLWAL 103


>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic
          domain {Thermotoga maritima [TaxId: 2336]}
          Length = 348

 Score = 24.4 bits (52), Expect = 6.1
 Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 2/51 (3%)

Query: 5  QDFYETTLEALKDAKNDRLWFKT--NTKLGKLYFDREDFNKLSRILKQLHQ 53
           +     L+  K+   +           +G     R DF  +  + K + +
Sbjct: 22 WEETLKNLKLAKNFPFEVFQIDDAYEKDIGDWLVTRGDFPSVEEMAKVIAE 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.375 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 473,480
Number of extensions: 20589
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 19
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.3 bits)