Query psy349
Match_columns 103
No_of_seqs 101 out of 163
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 18:02:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1583|consensus 100.0 2.4E-43 5.3E-48 280.8 5.6 103 1-103 16-118 (330)
2 KOG1582|consensus 99.8 2.1E-22 4.6E-27 161.6 2.5 101 2-103 57-159 (367)
3 PF08449 UAA: UAA transporter 99.8 2.1E-21 4.5E-26 150.7 5.4 101 2-103 14-117 (303)
4 KOG1580|consensus 98.4 3.5E-07 7.6E-12 73.3 3.6 98 5-103 30-138 (337)
5 KOG1581|consensus 97.9 8.7E-06 1.9E-10 66.3 3.7 98 5-103 31-136 (327)
6 TIGR00817 tpt Tpt phosphate/ph 97.1 0.00068 1.5E-08 52.2 4.1 87 16-103 29-118 (302)
7 PTZ00343 triose or hexose phos 97.0 0.00084 1.8E-08 53.8 4.4 86 17-103 77-167 (350)
8 PF06027 DUF914: Eukaryotic pr 94.8 0.032 7E-07 45.5 3.7 58 45-103 75-132 (334)
9 KOG1441|consensus 92.5 0.27 5.8E-06 40.0 5.1 89 14-103 44-136 (316)
10 KOG1444|consensus 92.0 0.16 3.4E-06 41.6 3.2 55 48-103 76-130 (314)
11 PF04142 Nuc_sug_transp: Nucle 79.0 0.82 1.8E-05 35.3 0.7 54 49-103 17-70 (244)
12 PF00892 EamA: EamA-like trans 76.4 2.9 6.2E-05 26.7 2.6 85 17-103 18-107 (126)
13 KOG1443|consensus 75.7 12 0.00026 31.2 6.6 73 25-98 56-132 (349)
14 CHL00031 psbT photosystem II p 69.1 4.6 0.0001 23.0 1.9 25 25-49 7-31 (33)
15 PRK11875 psbT photosystem II r 68.3 4.9 0.00011 22.6 1.9 24 25-48 7-30 (31)
16 PF10104 Brr6_like_C_C: Di-sul 61.5 13 0.00028 26.5 3.5 56 8-72 76-133 (135)
17 TIGR00950 2A78 Carboxylate/Ami 58.9 19 0.00041 26.4 4.2 83 16-102 16-99 (260)
18 PF13536 EmrE: Multidrug resis 58.6 4 8.6E-05 27.2 0.5 54 48-103 33-87 (113)
19 TIGR03340 phn_DUF6 phosphonate 58.5 37 0.0008 25.8 5.8 85 18-103 27-116 (281)
20 PRK11453 O-acetylserine/cystei 52.3 20 0.00044 27.5 3.6 81 18-103 32-113 (299)
21 KOG1442|consensus 50.2 35 0.00077 28.4 4.7 83 18-101 61-153 (347)
22 TIGR00950 2A78 Carboxylate/Ami 44.1 55 0.0012 23.9 4.6 82 20-103 160-245 (260)
23 COG5070 VRG4 Nucleotide-sugar 41.6 18 0.0004 29.4 1.8 54 48-102 67-120 (309)
24 PF01405 PsbT: Photosystem II 38.9 19 0.00041 19.9 1.1 22 26-47 8-29 (29)
25 COG0697 RhaT Permeases of the 33.5 54 0.0012 23.7 3.1 82 20-102 38-123 (292)
26 KOG2766|consensus 29.0 16 0.00035 30.1 -0.3 79 19-102 46-130 (336)
27 PF03151 TPT: Triose-phosphate 28.4 28 0.0006 23.5 0.8 52 51-103 83-134 (153)
28 PRK15430 putative chlorampheni 25.2 50 0.0011 25.4 1.8 46 56-102 80-125 (296)
29 KOG1281|consensus 22.9 1.4E+02 0.0031 26.7 4.3 56 2-67 257-312 (586)
30 KOG2765|consensus 21.8 60 0.0013 27.8 1.7 50 53-103 163-212 (416)
31 PF12051 DUF3533: Protein of u 21.3 1.3E+02 0.0028 24.4 3.5 27 39-65 236-262 (382)
32 PF14147 Spore_YhaL: Sporulati 20.0 95 0.0021 19.3 1.9 16 47-62 1-16 (52)
No 1
>KOG1583|consensus
Probab=100.00 E-value=2.4e-43 Score=280.76 Aligned_cols=103 Identities=56% Similarity=0.932 Sum_probs=101.2
Q ss_pred CchhhhhhhhhhcCCCCchHHHHHHHHHHHHhhhhhhccCCCCCCcchHHHHHHHHHHHHHHhhccceeeeecccceeeE
Q psy349 1 MVKSFDLTSFVEEDPGGGNLITFSQFAFIALHGFVFTSKFGTAKPHIKVWDYMLLVVMFFITNVCNNYAFDFNIAMPLHM 80 (103)
Q Consensus 1 ~~~~~~lE~i~~~~p~~G~liTf~QFlfval~gl~~~~~~~~~~~~IPl~~y~~~v~lff~~sv~NN~af~y~Is~PlHi 80 (103)
+.||+++|+|++++|++||+|||+||+|+|+||++++.|++..||+||+|.|+++|+|||++|+.||+||+||||||+||
T Consensus 16 csnvv~lE~L~~~~pgsgNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHi 95 (330)
T KOG1583|consen 16 CSNVVFLELLVRNEPGSGNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHI 95 (330)
T ss_pred hchHHHHHHHHHhCCCCeeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEE
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecchhHHHHHHHHHHcccccC
Q psy349 81 IFRAGSLITNMIMGIIILKKVFD 103 (103)
Q Consensus 81 IFRS~~li~~Mi~G~li~~KrYs 103 (103)
||||||+++||++||+++|||||
T Consensus 96 IfRsgsll~nM~~g~il~~k~Ys 118 (330)
T KOG1583|consen 96 IFRSGSLLANMILGWILLGKRYS 118 (330)
T ss_pred EEecCcHHHHHHHHHHhccceee
Confidence 99999999999999999999997
No 2
>KOG1582|consensus
Probab=99.85 E-value=2.1e-22 Score=161.59 Aligned_cols=101 Identities=23% Similarity=0.262 Sum_probs=95.7
Q ss_pred chhhhhhhhhhcC--CCCchHHHHHHHHHHHHhhhhhhccCCCCCCcchHHHHHHHHHHHHHHhhccceeeeecccceee
Q psy349 2 VKSFDLTSFVEED--PGGGNLITFSQFAFIALHGFVFTSKFGTAKPHIKVWDYMLLVVMFFITNVCNNYAFDFNIAMPLH 79 (103)
Q Consensus 2 ~~~~~lE~i~~~~--p~~G~liTf~QFlfval~gl~~~~~~~~~~~~IPl~~y~~~v~lff~~sv~NN~af~y~Is~PlH 79 (103)
+|-+..|++.+.. +++||.+|+.||++++.+|+++..-+..++|.+|.|+|.+++++...++.+.|.+++|. ++|.|
T Consensus 57 ~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYL-NYPtQ 135 (367)
T KOG1582|consen 57 VYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYL-NYPTQ 135 (367)
T ss_pred HHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhhhccccCcCccccc-cCcHH
Confidence 4667889997766 77899999999999999999998889999999999999999999999999999999999 99999
Q ss_pred EeeecchhHHHHHHHHHHcccccC
Q psy349 80 MIFRAGSLITNMIMGIIILKKVFD 103 (103)
Q Consensus 80 iIFRS~~li~~Mi~G~li~~KrYs 103 (103)
+|||||++++.|++|.+++||||.
T Consensus 136 viFKccKliPVmiggifIqGkRY~ 159 (367)
T KOG1582|consen 136 VIFKCCKLIPVMIGGIFIQGKRYG 159 (367)
T ss_pred HHHHhhhhhhhhheeeeecccccc
Confidence 999999999999999999999995
No 3
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.84 E-value=2.1e-21 Score=150.65 Aligned_cols=101 Identities=30% Similarity=0.539 Sum_probs=95.4
Q ss_pred chhhhhhhhhhcCCCC--chHHHHHHHHHHHHhhhhhhccCC-CCCCcchHHHHHHHHHHHHHHhhccceeeeeccccee
Q psy349 2 VKSFDLTSFVEEDPGG--GNLITFSQFAFIALHGFVFTSKFG-TAKPHIKVWDYMLLVVMFFITNVCNNYAFDFNIAMPL 78 (103)
Q Consensus 2 ~~~~~lE~i~~~~p~~--G~liTf~QFlfval~gl~~~~~~~-~~~~~IPl~~y~~~v~lff~~sv~NN~af~y~Is~Pl 78 (103)
.+.+.+|.+.+.+++. ++.+||+|+++.++.+++.....+ .+++++|+++|+..+++++..+.++|.|++| ||+|+
T Consensus 14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-i~~p~ 92 (303)
T PF08449_consen 14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKY-ISYPT 92 (303)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHh-CChHH
Confidence 4789999999999887 999999999999999998776655 7899999999999999999999999999999 89999
Q ss_pred eEeeecchhHHHHHHHHHHcccccC
Q psy349 79 HMIFRAGSLITNMIMGIIILKKVFD 103 (103)
Q Consensus 79 HiIFRS~~li~~Mi~G~li~~KrYs 103 (103)
|+++||++++++|++|++++||||+
T Consensus 93 ~~~~ks~~~i~vmi~~~l~~~k~y~ 117 (303)
T PF08449_consen 93 QIVFKSSKPIPVMILGVLILGKRYS 117 (303)
T ss_pred HHHHhhhHHHHHHHHHHHhcCcccc
Confidence 9999999999999999999999996
No 4
>KOG1580|consensus
Probab=98.35 E-value=3.5e-07 Score=73.32 Aligned_cols=98 Identities=18% Similarity=0.270 Sum_probs=75.0
Q ss_pred hhhhhhhhcC---CC-CchHHHH------HHHHHHHHhhhh-hhccCCCCCCcchHHHHHHHHHHHHHHhhccceeeeec
Q psy349 5 FDLTSFVEED---PG-GGNLITF------SQFAFIALHGFV-FTSKFGTAKPHIKVWDYMLLVVMFFITNVCNNYAFDFN 73 (103)
Q Consensus 5 ~~lE~i~~~~---p~-~G~liTf------~QFlfval~gl~-~~~~~~~~~~~IPl~~y~~~v~lff~~sv~NN~af~y~ 73 (103)
+.+|.|.|.. |+ ++---|| .|-..-++++=+ +..+...+..+.|-+-|+.-..-+..-+|.+|.|+.|-
T Consensus 30 I~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~v 109 (337)
T KOG1580|consen 30 IQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNTPTKMYAACSASYLLAMVSSNQALQYV 109 (337)
T ss_pred hHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccccccCCcchHHHHHHHHHHHHHHhccchhccc
Confidence 4578887754 22 2333444 444444454422 22333345668999999999999999999999999987
Q ss_pred ccceeeEeeecchhHHHHHHHHHHcccccC
Q psy349 74 IAMPLHMIFRAGSLITNMIMGIIILKKVFD 103 (103)
Q Consensus 74 Is~PlHiIFRS~~li~~Mi~G~li~~KrYs 103 (103)
|+|+|+.=+||+.|+.||+|.++.+|+|+
T Consensus 110 -pYPTqVlgKScKPIPVMilGVl~~~KsY~ 138 (337)
T KOG1580|consen 110 -PYPTQVLGKSCKPIPVMILGVLFAHKSYH 138 (337)
T ss_pred -CCcHHHhcccCCCcceeeeehhhhccccc
Confidence 99999999999999999999999999995
No 5
>KOG1581|consensus
Probab=97.93 E-value=8.7e-06 Score=66.30 Aligned_cols=98 Identities=12% Similarity=0.249 Sum_probs=77.5
Q ss_pred hhhhhhhhcCC-------CCchHHHHHHHHHHHHhhhhhhccC-CCCCCcchHHHHHHHHHHHHHHhhccceeeeecccc
Q psy349 5 FDLTSFVEEDP-------GGGNLITFSQFAFIALHGFVFTSKF-GTAKPHIKVWDYMLLVVMFFITNVCNNYAFDFNIAM 76 (103)
Q Consensus 5 ~~lE~i~~~~p-------~~G~liTf~QFlfval~gl~~~~~~-~~~~~~IPl~~y~~~v~lff~~sv~NN~af~y~Is~ 76 (103)
+.+|.|+++.= .+-..+-|+|=+...+.|......+ ...+.+-|+++|....+.=-.++-+-=-|++|- |+
T Consensus 31 VlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyv-Sy 109 (327)
T KOG1581|consen 31 VLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYV-SY 109 (327)
T ss_pred HHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhc-cc
Confidence 56788866542 1367899999888888886543222 224668899999988877777777777788865 99
Q ss_pred eeeEeeecchhHHHHHHHHHHcccccC
Q psy349 77 PLHMIFRAGSLITNMIMGIIILKKVFD 103 (103)
Q Consensus 77 PlHiIFRS~~li~~Mi~G~li~~KrYs 103 (103)
|+|++=|||+++++|++|.++.||||+
T Consensus 110 Ptq~LaKscKmIPVmlmg~Lvy~~ky~ 136 (327)
T KOG1581|consen 110 PTQTLAKSCKMIPVMLMGTLVYGRKYS 136 (327)
T ss_pred hHHHHHHHhhhhHHHHHHHHHhcCccC
Confidence 999999999999999999999999996
No 6
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.09 E-value=0.00068 Score=52.23 Aligned_cols=87 Identities=14% Similarity=0.069 Sum_probs=65.6
Q ss_pred CCchHHHHHHHHHHHHhhhhhhccCCCCCCcchH---HHHHHHHHHHHHHhhccceeeeecccceeeEeeecchhHHHHH
Q psy349 16 GGGNLITFSQFAFIALHGFVFTSKFGTAKPHIKV---WDYMLLVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMI 92 (103)
Q Consensus 16 ~~G~liTf~QFlfval~gl~~~~~~~~~~~~IPl---~~y~~~v~lff~~sv~NN~af~y~Is~PlHiIFRS~~li~~Mi 92 (103)
+.-..+|+.|+.+.++...+.......++++.+. +..+...+++.....++|+++.|. +....-+.|+..++.+++
T Consensus 29 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~-s~s~~~li~~~~Pv~~~l 107 (302)
T TIGR00817 29 PYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKV-AVSFTHTIKAMEPFFSVV 107 (302)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHhcchHHHHH
Confidence 4567899999998877665542211223334443 444556666667788999999976 999999999999999999
Q ss_pred HHHHHcccccC
Q psy349 93 MGIIILKKVFD 103 (103)
Q Consensus 93 ~G~li~~KrYs 103 (103)
++++++|||++
T Consensus 108 l~~~~~~e~~~ 118 (302)
T TIGR00817 108 LSAFFLGQEFP 118 (302)
T ss_pred HHHHHhCCCCc
Confidence 99999999975
No 7
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.04 E-value=0.00084 Score=53.77 Aligned_cols=86 Identities=12% Similarity=0.142 Sum_probs=64.0
Q ss_pred CchHHHHHHHHHHHHhhhhhhccCCCCCCcc-----hHHHHHHHHHHHHHHhhccceeeeecccceeeEeeecchhHHHH
Q psy349 17 GGNLITFSQFAFIALHGFVFTSKFGTAKPHI-----KVWDYMLLVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNM 91 (103)
Q Consensus 17 ~G~liTf~QFlfval~gl~~~~~~~~~~~~I-----Pl~~y~~~v~lff~~sv~NN~af~y~Is~PlHiIFRS~~li~~M 91 (103)
.-..+|..||++-++...+....-..++|++ .++..+.+.++........|.++++. ++...-+.|+..++.++
T Consensus 77 ~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~-svs~~~iika~~Pvft~ 155 (350)
T PTZ00343 77 LPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLG-AVSFTHVVKAAEPVFTA 155 (350)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHhhHHHHH
Confidence 4689999999999877655432111222333 34455556666665666678999966 99999999999999999
Q ss_pred HHHHHHcccccC
Q psy349 92 IMGIIILKKVFD 103 (103)
Q Consensus 92 i~G~li~~KrYs 103 (103)
+++++++|+|||
T Consensus 156 lls~~~l~ek~s 167 (350)
T PTZ00343 156 LLSILFLKQFLN 167 (350)
T ss_pred HHHHHHhCCCcc
Confidence 999999999986
No 8
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=94.85 E-value=0.032 Score=45.48 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=54.5
Q ss_pred CcchHHHHHHHHHHHHHHhhccceeeeecccceeeEeeecchhHHHHHHHHHHcccccC
Q psy349 45 PHIKVWDYMLLVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVFD 103 (103)
Q Consensus 45 ~~IPl~~y~~~v~lff~~sv~NN~af~y~Is~PlHiIFRS~~li~~Mi~G~li~~KrYs 103 (103)
.+.|-+.|++++++=+..|-+-|.|+.|- ++---.+.+|.+.+.+|+++++++|+||+
T Consensus 75 ~~~~~w~y~lla~~Dv~aN~~~v~a~~yT-svtS~~lL~~~~i~~~~~LS~~fL~~ry~ 132 (334)
T PF06027_consen 75 LKRPWWKYFLLALLDVEANYLVVLAYQYT-SVTSVQLLDCTSIPFVMILSFIFLKRRYS 132 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcc-cHhHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence 46789999999999999999999999998 99999999999999999999999999995
No 9
>KOG1441|consensus
Probab=92.53 E-value=0.27 Score=40.04 Aligned_cols=89 Identities=15% Similarity=0.191 Sum_probs=72.3
Q ss_pred CCCCchHHHHHHHHHHHHhhhhhhc-cC---CCCCCcchHHHHHHHHHHHHHHhhccceeeeecccceeeEeeecchhHH
Q psy349 14 DPGGGNLITFSQFAFIALHGFVFTS-KF---GTAKPHIKVWDYMLLVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLIT 89 (103)
Q Consensus 14 ~p~~G~liTf~QFlfval~gl~~~~-~~---~~~~~~IPl~~y~~~v~lff~~sv~NN~af~y~Is~PlHiIFRS~~li~ 89 (103)
+.+.-..+|..|+..-++-.+.... +. ...+++.|++.=+.+.+.+....++-|.++.|+ |+-.-=+.|+...+.
T Consensus 44 ~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v-~VsF~q~iKa~~P~~ 122 (316)
T KOG1441|consen 44 GFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYV-PVSFYQTIKALMPPF 122 (316)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhcc-chhHHHHHHhhcchh
Confidence 4556778888877777777765432 21 122356899999999999999999999999977 888888899999999
Q ss_pred HHHHHHHHcccccC
Q psy349 90 NMIMGIIILKKVFD 103 (103)
Q Consensus 90 ~Mi~G~li~~KrYs 103 (103)
+.++++++.+|||+
T Consensus 123 tvl~~~~~~~~~~s 136 (316)
T KOG1441|consen 123 TVLLSVLLLGKTYS 136 (316)
T ss_pred HHHHHHHHhCCCCc
Confidence 99999999999986
No 10
>KOG1444|consensus
Probab=92.03 E-value=0.16 Score=41.63 Aligned_cols=55 Identities=11% Similarity=0.249 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHhhccceeeeecccceeeEeeecchhHHHHHHHHHHcccccC
Q psy349 48 KVWDYMLLVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVFD 103 (103)
Q Consensus 48 Pl~~y~~~v~lff~~sv~NN~af~y~Is~PlHiIFRS~~li~~Mi~G~li~~KrYs 103 (103)
-.|.|+..-++|+..-..+=.++.|- ++|.-++||+...+.+|+....+.|||-+
T Consensus 76 ~~kk~~P~~~lf~~~i~t~~~slk~l-nVpm~tv~kn~tii~~ai~E~lf~~~~~~ 130 (314)
T KOG1444|consen 76 TAKKWFPVSLLFVGMLFTGSKSLKYL-NVPMFTVFKNLTIILTAIGEVLFFGKRPS 130 (314)
T ss_pred HHHHHccHHHHHHHHHHHcccccccc-CchHHHHHhhchHHHHHHhHHhhcCcCch
Confidence 36889888888888888887788765 99999999999999999999999999854
No 11
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=78.98 E-value=0.82 Score=35.33 Aligned_cols=54 Identities=9% Similarity=0.256 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhhccceeeeecccceeeEeeecchhHHHHHHHHHHcccccC
Q psy349 49 VWDYMLLVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVFD 103 (103)
Q Consensus 49 l~~y~~~v~lff~~sv~NN~af~y~Is~PlHiIFRS~~li~~Mi~G~li~~KrYs 103 (103)
...+++-+++|...|.+...++.+- +-++--+.|+++.+.+-+++++++|||.|
T Consensus 17 ~~~~~vPA~lY~~qn~L~~~al~~l-d~~t~qvl~q~kIl~TAl~s~~~L~r~ls 70 (244)
T PF04142_consen 17 TLKLAVPALLYAIQNNLQFVALSYL-DPSTFQVLSQSKILFTALFSVLLLKRRLS 70 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHhhHHHHHHHHHHHHHHcccc
Confidence 5778899999999999999999965 77888889999999999999999999975
No 12
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=76.39 E-value=2.9 Score=26.69 Aligned_cols=85 Identities=16% Similarity=0.247 Sum_probs=54.6
Q ss_pred CchHHHHHHHHHHHHhhhhhhccCCCC-CCcchHHHHHHHHH---H-HHHHhhccceeeeecccceeeEeeecchhHHHH
Q psy349 17 GGNLITFSQFAFIALHGFVFTSKFGTA-KPHIKVWDYMLLVV---M-FFITNVCNNYAFDFNIAMPLHMIFRAGSLITNM 91 (103)
Q Consensus 17 ~G~liTf~QFlfval~gl~~~~~~~~~-~~~IPl~~y~~~v~---l-ff~~sv~NN~af~y~Is~PlHiIFRS~~li~~M 91 (103)
.-..+++.++++-++ .++...-...+ ..+.+.+.+..... + ......+-+++.++ ++...-..+.+..++.++
T Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~pv~~~ 95 (126)
T PF00892_consen 18 SPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKY-ISASIVSILQYLSPVFAA 95 (126)
T ss_pred CHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHh-cchhHHHHHHHHHHHHHH
Confidence 345678888888876 33322111111 23333333333322 2 35566777778775 488888889999999999
Q ss_pred HHHHHHcccccC
Q psy349 92 IMGIIILKKVFD 103 (103)
Q Consensus 92 i~G~li~~KrYs 103 (103)
++|++++|+|-+
T Consensus 96 i~~~~~~~e~~~ 107 (126)
T PF00892_consen 96 ILGWLFLGERPS 107 (126)
T ss_pred HHHHHHcCCCCC
Confidence 999999998854
No 13
>KOG1443|consensus
Probab=75.72 E-value=12 Score=31.22 Aligned_cols=73 Identities=15% Similarity=0.310 Sum_probs=50.0
Q ss_pred HHHHHHHhhhhhhccCCCCCCcchHHHHH----HHHHHHHHHhhccceeeeecccceeeEeeecchhHHHHHHHHHHc
Q psy349 25 QFAFIALHGFVFTSKFGTAKPHIKVWDYM----LLVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIIL 98 (103)
Q Consensus 25 QFlfval~gl~~~~~~~~~~~~IPl~~y~----~~v~lff~~sv~NN~af~y~Is~PlHiIFRS~~li~~Mi~G~li~ 98 (103)
||+|-++.=...+.+-.+++...-.+.|+ ..++..-.--.++||+|.|- ++-+--+-||++.+-..+.|.++-
T Consensus 56 ~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yV-tlSlYTM~KSSsi~FIllFs~if~ 132 (349)
T KOG1443|consen 56 KFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYV-TLSLYTMTKSSSILFILLFSLIFK 132 (349)
T ss_pred HHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeee-eeeeeeeccccHHHHHHHHHHHHH
Confidence 44444443333433323333345556666 55555666778999999986 999999999999999999998763
No 14
>CHL00031 psbT photosystem II protein T
Probab=69.09 E-value=4.6 Score=23.01 Aligned_cols=25 Identities=20% Similarity=0.467 Sum_probs=20.2
Q ss_pred HHHHHHHhhhhhhccCCCCCCcchH
Q psy349 25 QFAFIALHGFVFTSKFGTAKPHIKV 49 (103)
Q Consensus 25 QFlfval~gl~~~~~~~~~~~~IPl 49 (103)
-|++++..|.+++.-+++.||+||-
T Consensus 7 tfll~~tlgilFFAI~FRePPri~k 31 (33)
T CHL00031 7 TFLLVSTLGIIFFAIFFREPPKVPT 31 (33)
T ss_pred HHHHHHHHHHHHHhheecCCCCCCC
Confidence 4778888888888878888998874
No 15
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=68.33 E-value=4.9 Score=22.60 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=19.3
Q ss_pred HHHHHHHhhhhhhccCCCCCCcch
Q psy349 25 QFAFIALHGFVFTSKFGTAKPHIK 48 (103)
Q Consensus 25 QFlfval~gl~~~~~~~~~~~~IP 48 (103)
-|+++...|.+++.-+++.||+|+
T Consensus 7 tfll~~tlgiiFFAIfFRepPri~ 30 (31)
T PRK11875 7 ILILTLALVTLFFAIAFRDPPKID 30 (31)
T ss_pred HHHHHHHHHHHHHhhhccCCCCCC
Confidence 467888888888877888888876
No 16
>PF10104 Brr6_like_C_C: Di-sulfide bridge nucleocytoplasmic transport domain; InterPro: IPR018767 This entry represents the highly conserved C-terminal region of Brr6-like proteins, including Brl1, which are found in fungi. Brr6 from Saccharomyces cerevisiae (Baker's yeast) is an essential nuclear envelope integral membrane protein that is required for mRNA nuclear export []. Brr6 is involved in the nuclear pore complex (NPC) distribution and nuclear envelope morphology. Brr6 interacts with Brl1, which is also involved in mRNA and protein export from the nucleus []. The conserved C-terminal region carries four highly conserved cysteine residues. It is suggested that members of the family interact with each other via di-sulphide bridges to form a complex that is involved in nucleocytoplasmic transport.; GO: 0015031 protein transport, 0051028 mRNA transport, 0016021 integral to membrane
Probab=61.45 E-value=13 Score=26.53 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=40.3
Q ss_pred hhhhhcCCCC-chHHH-HHHHHHHHHhhhhhhccCCCCCCcchHHHHHHHHHHHHHHhhccceeeee
Q psy349 8 TSFVEEDPGG-GNLIT-FSQFAFIALHGFVFTSKFGTAKPHIKVWDYMLLVVMFFITNVCNNYAFDF 72 (103)
Q Consensus 8 E~i~~~~p~~-G~liT-f~QFlfval~gl~~~~~~~~~~~~IPl~~y~~~v~lff~~sv~NN~af~y 72 (103)
|.=+.+||+. |..-. -+|-+-=.+-||++... .|.++.+...+.+....+|++|++
T Consensus 76 e~CMn~Dp~~~~~~~~l~ae~laeiiN~Fie~is---------~Kt~~fll~~~~~~~~~~N~~fg~ 133 (135)
T PF10104_consen 76 EKCMNRDPDSIGRSSILSAETLAEIINSFIEPIS---------WKTLIFLLLIILIWIFASNFAFGF 133 (135)
T ss_pred HHHHcCChHHhhHHHHHHHHHHHHHHHHHHhHhH---------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677665 33333 36666666777766554 789999999999999999999986
No 17
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=58.95 E-value=19 Score=26.41 Aligned_cols=83 Identities=11% Similarity=0.033 Sum_probs=53.3
Q ss_pred CCchHHHHHHHHHHHHhhhhhhccCCCCCCcchHHHHHHHHHH-HHHHhhccceeeeecccceeeEeeecchhHHHHHHH
Q psy349 16 GGGNLITFSQFAFIALHGFVFTSKFGTAKPHIKVWDYMLLVVM-FFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMG 94 (103)
Q Consensus 16 ~~G~liTf~QFlfval~gl~~~~~~~~~~~~IPl~~y~~~v~l-ff~~sv~NN~af~y~Is~PlHiIFRS~~li~~Mi~G 94 (103)
.....+++.+++..++.-++.... + + ++-..+.++....+ +.....+=.+|++| ++.-.-.+..+..++.+++++
T Consensus 16 ~~~~~~~~~r~~~~~l~l~~~~~~-~-~-~~~~~~~~~~~~~~~~~l~~~~~~~a~~~-~~~~~~~ii~~~~P~~~~~~~ 91 (260)
T TIGR00950 16 VPLYFAVFRRLIFALLLLLPLLRR-R-P-PLKRLLRLLLLGALQIGVFYVLYFVAVKR-LPVGEAALLLYLAPLYVTLLS 91 (260)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHh-c-c-CHhHHHHHHHHHHHHHHHHHHHHHHHHHh-cChhhhHHHHhhhHHHHHHHH
Confidence 345667777777666554443222 1 2 22223334444333 45555666788887 577777888899999999999
Q ss_pred HHHccccc
Q psy349 95 IIILKKVF 102 (103)
Q Consensus 95 ~li~~KrY 102 (103)
++++|+|-
T Consensus 92 ~l~~~e~~ 99 (260)
T TIGR00950 92 DLMGKERP 99 (260)
T ss_pred HHHccCCC
Confidence 99998774
No 18
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=58.57 E-value=4 Score=27.21 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHH-HHHhhccceeeeecccceeeEeeecchhHHHHHHHHHHcccccC
Q psy349 48 KVWDYMLLVVMF-FITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVFD 103 (103)
Q Consensus 48 Pl~~y~~~v~lf-f~~sv~NN~af~y~Is~PlHiIFRS~~li~~Mi~G~li~~KrYs 103 (103)
|...++....+. .....+-.+|.++. + +.-...++...+.++++|++++|+|-+
T Consensus 33 ~~~~~~~~g~~~~~~~~~~~~~a~~~~-~-~~v~~i~~~~pi~~~ll~~~~~~er~~ 87 (113)
T PF13536_consen 33 PWLWLILAGLLGFGVAYLLFFYALSYA-P-ALVAAIFSLSPIFTALLSWLFFKERLS 87 (113)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 333333333433 36778888888876 6 445588999999999999999999864
No 19
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=58.52 E-value=37 Score=25.83 Aligned_cols=85 Identities=9% Similarity=0.015 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHHHhhhhhhccCC-CCC-CcchHHHHHHHH---HHHHHHhhccceeeeecccceeeEeeecchhHHHHH
Q psy349 18 GNLITFSQFAFIALHGFVFTSKFG-TAK-PHIKVWDYMLLV---VMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMI 92 (103)
Q Consensus 18 G~liTf~QFlfval~gl~~~~~~~-~~~-~~IPl~~y~~~v---~lff~~sv~NN~af~y~Is~PlHiIFRS~~li~~Mi 92 (103)
..-.++..+...++..++...... .++ +..+-+.|...+ ........+-+.++++- +.-.=.++.....+.+.+
T Consensus 27 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~l~~~~p~~~~l 105 (281)
T TIGR03340 27 EPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHA-DVGLVYPLARSSPLLVAI 105 (281)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcC-ChhhhhhHHhhhHHHHHH
Confidence 344566666666666655432211 111 111222222221 12334445556666654 555556667778999999
Q ss_pred HHHHHcccccC
Q psy349 93 MGIIILKKVFD 103 (103)
Q Consensus 93 ~G~li~~KrYs 103 (103)
+|++++|+|-+
T Consensus 106 ~~~~~~~e~~~ 116 (281)
T TIGR03340 106 WATLTLGETLS 116 (281)
T ss_pred HHHHHHcCCCC
Confidence 99999998854
No 20
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=52.34 E-value=20 Score=27.54 Aligned_cols=81 Identities=12% Similarity=0.195 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHHHhhhhhhccCCCCCCcchHHHHHHHHHH-HHHHhhccceeeeecccceeeEeeecchhHHHHHHHHH
Q psy349 18 GNLITFSQFAFIALHGFVFTSKFGTAKPHIKVWDYMLLVVM-FFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGII 96 (103)
Q Consensus 18 G~liTf~QFlfval~gl~~~~~~~~~~~~IPl~~y~~~v~l-ff~~sv~NN~af~y~Is~PlHiIFRS~~li~~Mi~G~l 96 (103)
-..+++..|++-++.-++.. ++++.|.+..+..... ++....+...+..|.++.-.-.+.-+...+.+++++++
T Consensus 32 p~~~~~~R~~~a~~~l~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~ 106 (299)
T PRK11453 32 PLMLAGLRFMLVAFPAIFFV-----ARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAF 106 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHH
Confidence 44566777776554433332 1233454433332221 22222333455566543323244466677889999999
Q ss_pred HcccccC
Q psy349 97 ILKKVFD 103 (103)
Q Consensus 97 i~~KrYs 103 (103)
++|+|-+
T Consensus 107 ~l~e~~~ 113 (299)
T PRK11453 107 TFGERLQ 113 (299)
T ss_pred HhcCcCc
Confidence 9998853
No 21
>KOG1442|consensus
Probab=50.18 E-value=35 Score=28.37 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHHHhhhhhh-----ccCCCCCCc--chH---HHHHHHHHHHHHHhhccceeeeecccceeeEeeecchh
Q psy349 18 GNLITFSQFAFIALHGFVFT-----SKFGTAKPH--IKV---WDYMLLVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSL 87 (103)
Q Consensus 18 G~liTf~QFlfval~gl~~~-----~~~~~~~~~--IPl---~~y~~~v~lff~~sv~NN~af~y~Is~PlHiIFRS~~l 87 (103)
--++|+.|=+....+-+... ......-++ +-+ |.-+-..+.|..+-..||+.++|- ++-.-=|=||.-+
T Consensus 61 plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yV-gVaFYyvgRsLtt 139 (347)
T KOG1442|consen 61 PLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYV-GVAFYYVGRSLTT 139 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhc-ceEEEEeccchhh
Confidence 46788888877766655322 111111122 222 334455677899999999999975 9999999999999
Q ss_pred HHHHHHHHHHcccc
Q psy349 88 ITNMIMGIIILKKV 101 (103)
Q Consensus 88 i~~Mi~G~li~~Kr 101 (103)
+-|.++.|.++|.|
T Consensus 140 vFtVlLtyvllkqk 153 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQK 153 (347)
T ss_pred hHHHHhHHhhcccc
Confidence 99999999999876
No 22
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=44.08 E-value=55 Score=23.93 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCcchHHHHHHH--HHH--HHHHhhccceeeeecccceeeEeeecchhHHHHHHHH
Q psy349 20 LITFSQFAFIALHGFVFTSKFGTAKPHIKVWDYMLL--VVM--FFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGI 95 (103)
Q Consensus 20 liTf~QFlfval~gl~~~~~~~~~~~~IPl~~y~~~--v~l--ff~~sv~NN~af~y~Is~PlHiIFRS~~li~~Mi~G~ 95 (103)
..+..|+++-++.-++.....+ +++..+-+.|... ... ......+.+++.++ ++.....++....++..+++|+
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~s~~~~~~pv~~~ll~~ 237 (260)
T TIGR00950 160 QFTGWVLLLGALLLLPFAWFLG-PNPQALSLQWGALLYLGLIGTALAYFLWNKGLTL-VDPSAASILALAEPLVALLLGL 237 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHH
Confidence 3444566665555544322212 1222234455322 222 24456678889985 5888999999999999999999
Q ss_pred HHcccccC
Q psy349 96 IILKKVFD 103 (103)
Q Consensus 96 li~~KrYs 103 (103)
+++|.+.+
T Consensus 238 ~~~~E~~~ 245 (260)
T TIGR00950 238 LILGETLS 245 (260)
T ss_pred HHhCCCCC
Confidence 99998754
No 23
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=41.64 E-value=18 Score=29.36 Aligned_cols=54 Identities=11% Similarity=0.238 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHhhccceeeeecccceeeEeeecchhHHHHHHHHHHccccc
Q psy349 48 KVWDYMLLVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVF 102 (103)
Q Consensus 48 Pl~~y~~~v~lff~~sv~NN~af~y~Is~PlHiIFRS~~li~~Mi~G~li~~KrY 102 (103)
-.+.|...-++...+--..--++.|. ++|+--|||-.+.+..-.+-.++.|+|-
T Consensus 67 ~aK~WfpiSfLLv~MIyt~SKsLqyL-~vpiYTiFKNltII~iAygEvl~Fgg~v 120 (309)
T COG5070 67 KAKKWFPISFLLVVMIYTSSKSLQYL-AVPIYTIFKNLTIILIAYGEVLFFGGRV 120 (309)
T ss_pred hhhhhcCHHHHHHHHHHhcccceeee-eeeHHHHhccceeehhHhhHHHHhcCcc
Confidence 45677766666666666666789988 9999999999999888888888888874
No 24
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=38.92 E-value=19 Score=19.94 Aligned_cols=22 Identities=32% Similarity=0.538 Sum_probs=12.0
Q ss_pred HHHHHHhhhhhhccCCCCCCcc
Q psy349 26 FAFIALHGFVFTSKFGTAKPHI 47 (103)
Q Consensus 26 Flfval~gl~~~~~~~~~~~~I 47 (103)
|+.++..|.+++.-+++.||||
T Consensus 8 ~ll~~tlgilffAI~FRePPrI 29 (29)
T PF01405_consen 8 FLLIGTLGILFFAIFFREPPRI 29 (29)
T ss_dssp HHHHHHHHHHHHHHHSS-----
T ss_pred HHHHHHHHHHHhhhhccCCCCC
Confidence 5677777777776666777665
No 25
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=33.48 E-value=54 Score=23.75 Aligned_cols=82 Identities=10% Similarity=0.096 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhhhhhcc--CCCCCCcchHHHHHHHHHH-HHHHhhccceeeeecccceeeEeeecchhHHHHHHHH-
Q psy349 20 LITFSQFAFIALHGFVFTSK--FGTAKPHIKVWDYMLLVVM-FFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGI- 95 (103)
Q Consensus 20 liTf~QFlfval~gl~~~~~--~~~~~~~IPl~~y~~~v~l-ff~~sv~NN~af~y~Is~PlHiIFRS~~li~~Mi~G~- 95 (103)
...+.++++..+.-++...+ ...++.+.|.+.+++...+ +.....+...+..+. +.....+.++...+.+.++++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~ 116 (292)
T COG0697 38 FAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYT-SASVASLIIGLLPLFTALLAVL 116 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHH
Confidence 33444666555552222221 1133444443334444444 555666777777755 888999999999999999996
Q ss_pred HHccccc
Q psy349 96 IILKKVF 102 (103)
Q Consensus 96 li~~KrY 102 (103)
+++|+|-
T Consensus 117 ~~~~e~~ 123 (292)
T COG0697 117 LLLGERL 123 (292)
T ss_pred HHccCCC
Confidence 6657763
No 26
>KOG2766|consensus
Probab=28.98 E-value=16 Score=30.12 Aligned_cols=79 Identities=23% Similarity=0.357 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHhhhhhhc--cCCCCCCcchHHHHHHHHHHHHHHhhccce----eeeecccceeeEeeecchhHHHHH
Q psy349 19 NLITFSQFAFIALHGFVFTS--KFGTAKPHIKVWDYMLLVVMFFITNVCNNY----AFDFNIAMPLHMIFRAGSLITNMI 92 (103)
Q Consensus 19 ~liTf~QFlfval~gl~~~~--~~~~~~~~IPl~~y~~~v~lff~~sv~NN~----af~y~Is~PlHiIFRS~~li~~Mi 92 (103)
|.=|+-.|+-+++..+.... -++.+--++-.|+|++++ .+.|-.|+ |..|- ++.--+..-|-+....|+
T Consensus 46 N~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla----~~DVEaNy~vV~AyQyT-smtSi~lLDcwaip~v~~ 120 (336)
T KOG2766|consen 46 NAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLA----FVDVEANYFVVKAYQYT-SMTSIMLLDCWAIPCVLV 120 (336)
T ss_pred CCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhhee----EEeecccEEEeeehhhc-chHHHHHHHHhhhHHHHH
Confidence 33445555666666655431 122222244456665544 34566663 55665 777777888999999999
Q ss_pred HHHHHccccc
Q psy349 93 MGIIILKKVF 102 (103)
Q Consensus 93 ~G~li~~KrY 102 (103)
+.|++++-||
T Consensus 121 lsw~fLktrY 130 (336)
T KOG2766|consen 121 LSWFFLKTRY 130 (336)
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 27
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=28.40 E-value=28 Score=23.49 Aligned_cols=52 Identities=10% Similarity=0.142 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhccceeeeecccceeeEeeecchhHHHHHHHHHHcccccC
Q psy349 51 DYMLLVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVFD 103 (103)
Q Consensus 51 ~y~~~v~lff~~sv~NN~af~y~Is~PlHiIFRS~~li~~Mi~G~li~~KrYs 103 (103)
.-+...++.+..|..+.+..++- |--+|-|.-+.+-+.+.++|+++.|...|
T Consensus 83 ~~~~~~~~~~~~n~~~f~~i~~t-S~lt~~v~~~~K~~~~i~~s~~~f~~~~t 134 (153)
T PF03151_consen 83 LLILSGLLAFLYNLSSFLLIKLT-SPLTYSVLGNVKRILVILLSVIFFGEPIT 134 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc-ChhHHHHHHHHHHHHHHHHHhhhcCCcCC
Confidence 33445566888999999999966 77799999999999999999999987643
No 28
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=25.25 E-value=50 Score=25.39 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=34.9
Q ss_pred HHHHHHHhhccceeeeecccceeeEeeecchhHHHHHHHHHHccccc
Q psy349 56 VVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVF 102 (103)
Q Consensus 56 v~lff~~sv~NN~af~y~Is~PlHiIFRS~~li~~Mi~G~li~~KrY 102 (103)
.........+.+++.++- |.-.=.+.-...++.+++++++++|+|-
T Consensus 80 ~~~~~~~~~~~~~a~~~~-~~~~a~~l~~~~Pi~v~l~~~~~l~E~~ 125 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNH-HMLEASLGYFINPLVNIVLGMIFLGERF 125 (296)
T ss_pred HHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344566788888888864 6555566677778889999999999884
No 29
>KOG1281|consensus
Probab=22.90 E-value=1.4e+02 Score=26.67 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=42.3
Q ss_pred chhhhhhhhhhcCCCCchHHHHHHHHHHHHhhhhhhccCCCCCCcchHHHHHHHHHHHHHHhhccc
Q psy349 2 VKSFDLTSFVEEDPGGGNLITFSQFAFIALHGFVFTSKFGTAKPHIKVWDYMLLVVMFFITNVCNN 67 (103)
Q Consensus 2 ~~~~~lE~i~~~~p~~G~liTf~QFlfval~gl~~~~~~~~~~~~IPl~~y~~~v~lff~~sv~NN 67 (103)
.|-+++|.+-...|.+.+.+.|+|.++.|+--..... +..|.....+|.+.+..-|
T Consensus 257 pnlVll~~~~~~fp~s~~~~Nf~swl~Fs~ppmL~~L----------~~~w~~l~~lflG~~~~~~ 312 (586)
T KOG1281|consen 257 PNLVLLGNMNVRFPLSMWVSNFASWLFFSFPPMLRYL----------LASWPFLQALFLGIALAAN 312 (586)
T ss_pred ccHHHHHHHHHhccccccccchHHHHHHhhHHHHHHH----------HHHHHHHHHHHhhhHhhhh
Confidence 4788999999999999999999999888876332211 4667777777777766333
No 30
>KOG2765|consensus
Probab=21.76 E-value=60 Score=27.81 Aligned_cols=50 Identities=18% Similarity=0.399 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhccceeeeecccceeeEeeecchhHHHHHHHHHHcccccC
Q psy349 53 MLLVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVFD 103 (103)
Q Consensus 53 ~~~v~lff~~sv~NN~af~y~Is~PlHiIFRS~~li~~Mi~G~li~~KrYs 103 (103)
+....+.|..|..-|.|++|. ++--.-|.-|.|-.-+..+|.++.+.|+|
T Consensus 163 l~fc~lWF~anl~~naALa~T-sVAS~TilSStSs~FtL~la~if~~e~ft 212 (416)
T KOG2765|consen 163 LFFCPLWFLANLTSNAALAFT-SVASTTILSSTSSFFTLFLAAIFPVERFT 212 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhhh-hhhhhhhhhhcchHHHHHHHHHcCcchhh
Confidence 344556789999999999999 99999999999999999999999888875
No 31
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=21.34 E-value=1.3e+02 Score=24.43 Aligned_cols=27 Identities=7% Similarity=0.324 Sum_probs=19.0
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHhhc
Q psy349 39 KFGTAKPHIKVWDYMLLVVMFFITNVC 65 (103)
Q Consensus 39 ~~~~~~~~IPl~~y~~~v~lff~~sv~ 65 (103)
....++|+.=+.||++..+.+|..|.+
T Consensus 236 ~~~l~~~~~~~~R~~~~~~~~~~~Sl~ 262 (382)
T PF12051_consen 236 RRKLKPRHYLIYRWIISWIAYFFLSLF 262 (382)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777788888888877766654
No 32
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=20.01 E-value=95 Score=19.32 Aligned_cols=16 Identities=25% Similarity=0.636 Sum_probs=13.3
Q ss_pred chHHHHHHHHHHHHHH
Q psy349 47 IKVWDYMLLVVMFFIT 62 (103)
Q Consensus 47 IPl~~y~~~v~lff~~ 62 (103)
+|.+.|++.+.++|+.
T Consensus 1 ~PwWvY~vi~gI~~S~ 16 (52)
T PF14147_consen 1 IPWWVYFVIAGIIFSG 16 (52)
T ss_pred CcchHHHHHHHHHHHH
Confidence 5899999998888765
Done!