Query psy349
Match_columns 103
No_of_seqs 101 out of 163
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 18:02:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_T Photosystem II reaction 60.7 4.3 0.00015 22.2 1.6 24 26-49 8-31 (32)
2 3b5d_A Multidrug transporter E 17.6 50 0.0017 21.2 1.4 50 53-103 34-84 (110)
3 2i68_A Protein EMRE; transmemb 14.4 30 0.001 23.6 -0.4 49 53-102 34-83 (137)
4 2o5n_A MUHV1GPM153; mouse cyto 11.3 1.3E+02 0.0043 24.0 2.2 23 65-87 182-222 (319)
5 2drn_C 24-residues peptide fro 8.8 66 0.0022 16.5 -0.2 16 7-22 11-26 (26)
6 2cql_A OK/SW-CL.103, 60S ribos 8.5 2E+02 0.0068 18.5 2.1 16 86-102 82-97 (100)
7 3s0x_A Peptidase A24B, FLAK do 8.3 5.5E+02 0.019 18.9 4.8 46 16-65 4-49 (237)
8 1eci_B Ectatomin; pore-forming 7.7 1.5E+02 0.005 16.0 0.9 10 83-92 19-28 (34)
9 1eci_A Ectatomin; pore-forming 7.6 1.5E+02 0.0053 16.1 1.0 10 83-92 21-30 (37)
10 3dwc_A TCMCP-1, metallocarboxy 7.4 37 0.0013 28.3 -2.3 10 74-83 356-365 (505)
No 1
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=60.73 E-value=4.3 Score=22.17 Aligned_cols=24 Identities=25% Similarity=0.438 Sum_probs=18.1
Q ss_pred HHHHHHhhhhhhccCCCCCCcchH
Q psy349 26 FAFIALHGFVFTSKFGTAKPHIKV 49 (103)
Q Consensus 26 Flfval~gl~~~~~~~~~~~~IPl 49 (103)
|+.++..|.+++.-+++.||+||=
T Consensus 8 ~ll~~tlgiiFFAI~FRePPri~~ 31 (32)
T 3arc_T 8 FIFACIIALFFFAIFFREPPRITK 31 (32)
T ss_dssp HHHHHHHHHHHHHHHTSCCCCCC-
T ss_pred HHHHHHHHHHHHhhhhcCCCCCCC
Confidence 667777787777777888888873
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=17.62 E-value=50 Score=21.16 Aligned_cols=50 Identities=6% Similarity=0.125 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhccceeeeecccceeeE-eeecchhHHHHHHHHHHcccccC
Q psy349 53 MLLVVMFFITNVCNNYAFDFNIAMPLHM-IFRAGSLITNMIMGIIILKKVFD 103 (103)
Q Consensus 53 ~~~v~lff~~sv~NN~af~y~Is~PlHi-IFRS~~li~~Mi~G~li~~KrYs 103 (103)
+..++.+...-.+-+.|++. +|+-.=- +.++.+.+.+.++|++++|.|-|
T Consensus 34 ~~~~~~~~~~~~~~~~al~~-~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s 84 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAY-IPTGIAYAIWSGVGIVLISLLSWGFFGQRLD 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CChhhHHHHHhhHHHHHHHHHHHHHhCCCCC
Confidence 44455566666777777773 3444442 35999999999999999998753
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=14.38 E-value=30 Score=23.57 Aligned_cols=49 Identities=2% Similarity=0.063 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhccceeeeecccceeeEe-eecchhHHHHHHHHHHccccc
Q psy349 53 MLLVVMFFITNVCNNYAFDFNIAMPLHMI-FRAGSLITNMIMGIIILKKVF 102 (103)
Q Consensus 53 ~~~v~lff~~sv~NN~af~y~Is~PlHiI-FRS~~li~~Mi~G~li~~KrY 102 (103)
++-++.+.....+-++|++. ++.-.=-. .++.+.+.+.++|++++|.+-
T Consensus 34 ~l~i~~~~ls~~l~~~alk~-i~~s~ay~iw~~l~pv~~~l~g~l~lgE~l 83 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAY-IPTGIAYAIWSGVGIVLISLLSWGFFGQRL 83 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45555677777788888884 35544434 489999999999999998764
No 4
>2o5n_A MUHV1GPM153; mouse cytomegalovirus, MHC-I-like, M145 family, MHC-IV superfamily, alpha-beta protein, viral protein; HET: NAG BMA NDG; 2.40A {Murid herpesvirus 1}
Probab=11.27 E-value=1.3e+02 Score=23.95 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=18.5
Q ss_pred ccceeeeecc------------------cceeeEeeecchh
Q psy349 65 CNNYAFDFNI------------------AMPLHMIFRAGSL 87 (103)
Q Consensus 65 ~NN~af~y~I------------------s~PlHiIFRS~~l 87 (103)
-||+.|.|++ |++.||..+|+|+
T Consensus 182 ~~~vSF~~~~~~~~~~~~~feCsvtt~vPl~f~iTl~~~g~ 222 (319)
T 2o5n_A 182 DNQYTLEDDILEDDIEMDIVQCQMTTQVPLKYHMTVWSAGR 222 (319)
T ss_dssp GSEEEEECCCCSSCSSEEEEEEEEECSCCBCEEEEEECTTS
T ss_pred cceEEEEEeeeeccCCCCeEEEEeecCCCceEEEEEEecCc
Confidence 3667777775 7899999999985
No 5
>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus}
Probab=8.76 E-value=66 Score=16.53 Aligned_cols=16 Identities=13% Similarity=0.218 Sum_probs=10.6
Q ss_pred hhhhhhcCCCCchHHH
Q psy349 7 LTSFVEEDPGGGNLIT 22 (103)
Q Consensus 7 lE~i~~~~p~~G~liT 22 (103)
.|..+++-+.+|.++|
T Consensus 11 VdaVi~qvkasgal~t 26 (26)
T 2drn_C 11 VDAVIEQVKAAGAYXX 26 (26)
T ss_dssp HHHHHHHHTTTTTC--
T ss_pred HHHHHHHHHhcccccC
Confidence 4667777788888776
No 6
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=8.52 E-value=2e+02 Score=18.46 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHccccc
Q psy349 86 SLITNMIMGIIILKKVF 102 (103)
Q Consensus 86 ~li~~Mi~G~li~~KrY 102 (103)
+++.||+.|.- .|=+|
T Consensus 82 slI~NMI~GVt-~Gf~y 97 (100)
T 2cql_A 82 SHVQNMIKGVT-LGSGP 97 (100)
T ss_dssp HHHHHHHHHHH-TSCCS
T ss_pred HHHHhhhEeec-CCEEE
Confidence 67889998874 45444
No 7
>3s0x_A Peptidase A24B, FLAK domain protein; preflagellin peptidase, GXGD protease, aspartyl protease, intramembrane proteolysis; 3.60A {Methanococcus maripaludis}
Probab=8.33 E-value=5.5e+02 Score=18.92 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=23.4
Q ss_pred CCchHHHHHHHHHHHHhhhhhhccCCCCCCcchHHHHHHHHHHHHHHhhc
Q psy349 16 GGGNLITFSQFAFIALHGFVFTSKFGTAKPHIKVWDYMLLVVMFFITNVC 65 (103)
Q Consensus 16 ~~G~liTf~QFlfval~gl~~~~~~~~~~~~IPl~~y~~~v~lff~~sv~ 65 (103)
++|.++ ++++..+..+. .+-...+.|+||=|.|..+..........
T Consensus 4 ~~~~mi---~~i~~l~~li~-Aa~~Dlk~R~IpN~l~~~ll~~gi~l~~~ 49 (237)
T 3s0x_A 4 GSGSMI---EYIIGALGLII-ASVQDFRSREIEDYIWIFLAVFGVLFAIY 49 (237)
T ss_dssp -CTTHH---HHHHHHHHHHH-HHHCC----CTHHHHHHHHHHHHHHHHHH
T ss_pred CCcchH---HHHHHHHHHHH-HHHHHhhhcEeCchhHHHHHHHHHHHHHH
Confidence 456653 34443333222 22236789999999999888765554443
No 8
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=7.69 E-value=1.5e+02 Score=15.98 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=7.4
Q ss_pred ecchhHHHHH
Q psy349 83 RAGSLITNMI 92 (103)
Q Consensus 83 RS~~li~~Mi 92 (103)
+|.|-+++||
T Consensus 19 kc~g~iat~i 28 (34)
T 1eci_B 19 KCEGSIATMI 28 (34)
T ss_dssp TBSTTHHHHH
T ss_pred hccccHHHHH
Confidence 5677788876
No 9
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=7.58 E-value=1.5e+02 Score=16.13 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=7.3
Q ss_pred ecchhHHHHH
Q psy349 83 RAGSLITNMI 92 (103)
Q Consensus 83 RS~~li~~Mi 92 (103)
+|.|-+++||
T Consensus 21 kc~g~iat~i 30 (37)
T 1eci_A 21 KCSGDIATYI 30 (37)
T ss_dssp TBCHHHHHHH
T ss_pred HccchHHHHH
Confidence 5677777776
No 10
>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of metallocarboxypept carboxypeptidase, hydrolase; 2.10A {Trypanosoma cruzi}
Probab=7.43 E-value=37 Score=28.31 Aligned_cols=10 Identities=40% Similarity=1.049 Sum_probs=6.2
Q ss_pred ccceeeEeee
Q psy349 74 IAMPLHMIFR 83 (103)
Q Consensus 74 Is~PlHiIFR 83 (103)
+.+|+|||.|
T Consensus 356 vTY~lHIilR 365 (505)
T 3dwc_A 356 LCYPLHVMLR 365 (505)
T ss_dssp TTHHHHHHHH
T ss_pred hhhhhHHHHH
Confidence 4566666666
Done!