Query psy349
Match_columns 103
No_of_seqs 101 out of 163
Neff 4.9
Searched_HMMs 13730
Date Fri Aug 16 18:02:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy349.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/349hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 44.9 5.4 0.0004 19.9 1.6 22 26-47 8-29 (30)
2 d1mkya3 d.52.5.1 (A:359-439) P 13.3 34 0.0025 19.9 1.2 16 69-85 65-80 (81)
3 d1diha2 d.81.1.3 (A:131-240) D 13.3 41 0.003 20.4 1.7 21 11-31 32-52 (110)
4 d2j01h1 d.141.1.1 (H:12-82) Ri 11.1 51 0.0037 18.3 1.5 10 86-95 59-68 (71)
5 d1vqoe1 d.141.1.1 (E:1-79) Rib 9.7 52 0.0038 18.6 1.2 10 86-95 67-76 (79)
6 d2zjre2 d.141.1.1 (E:5-82) Rib 9.1 66 0.0048 18.1 1.5 10 86-95 66-75 (78)
7 d1rl6a1 d.141.1.1 (A:7-81) Rib 8.4 74 0.0054 17.8 1.5 10 86-95 63-72 (75)
8 d2cqla1 d.141.1.1 (A:1-87) Rib 8.1 77 0.0056 18.0 1.5 10 86-95 75-84 (87)
9 d2qamg1 d.141.1.1 (G:1-81) Rib 7.6 72 0.0052 18.1 1.2 10 86-95 69-78 (81)
10 d1yl7a2 d.81.1.3 (A:106-214) D 7.6 58 0.0042 19.6 0.7 23 11-33 30-52 (109)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=44.90 E-value=5.4 Score=19.87 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=16.2
Q ss_pred HHHHHHhhhhhhccCCCCCCcc
Q psy349 26 FAFIALHGFVFTSKFGTAKPHI 47 (103)
Q Consensus 26 Flfval~gl~~~~~~~~~~~~I 47 (103)
|+|-.+.|+.++.-+++.||+|
T Consensus 8 ~ifac~i~lfffaiffreppri 29 (30)
T d2axtt1 8 FIFACIIALFFFAIFFREPPRI 29 (30)
T ss_dssp HHHHHHHHHHHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCC
Confidence 5666788887777777777776
No 2
>d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=13.33 E-value=34 Score=19.87 Aligned_cols=16 Identities=25% Similarity=0.706 Sum_probs=13.3
Q ss_pred eeeecccceeeEeeecc
Q psy349 69 AFDFNIAMPLHMIFRAG 85 (103)
Q Consensus 69 af~y~Is~PlHiIFRS~ 85 (103)
+|++. .+|+.++||+.
T Consensus 65 ~f~~~-G~Pi~l~fr~~ 80 (81)
T d1mkya3 65 VFPFE-GSPIFLKFKRS 80 (81)
T ss_dssp TCCCT-TCCCEEEEEEC
T ss_pred hCCCC-ccCEEEEEEeC
Confidence 46777 89999999985
No 3
>d1diha2 d.81.1.3 (A:131-240) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}
Probab=13.32 E-value=41 Score=20.38 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=17.1
Q ss_pred hhcCCCCchHHHHHHHHHHHH
Q psy349 11 VEEDPGGGNLITFSQFAFIAL 31 (103)
Q Consensus 11 ~~~~p~~G~liTf~QFlfval 31 (103)
-|.|.++|+.++++|-+--+.
T Consensus 32 ~K~DaPSGTAl~lae~i~~~~ 52 (110)
T d1diha2 32 HKVDAPSGTALAMGEAIAHAL 52 (110)
T ss_dssp TCCSSSCHHHHHHHHHHHHHT
T ss_pred cCCCCCchHHHHHHHHHHHhh
Confidence 466788999999999987654
No 4
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=11.12 E-value=51 Score=18.27 Aligned_cols=10 Identities=40% Similarity=0.820 Sum_probs=6.8
Q ss_pred hhHHHHHHHH
Q psy349 86 SLITNMIMGI 95 (103)
Q Consensus 86 ~li~~Mi~G~ 95 (103)
+++.||+.|.
T Consensus 59 sli~NmI~GV 68 (71)
T d2j01h1 59 TLIANAVKGV 68 (71)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhheee
Confidence 5677777764
No 5
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=9.73 E-value=52 Score=18.58 Aligned_cols=10 Identities=50% Similarity=0.723 Sum_probs=6.8
Q ss_pred hhHHHHHHHH
Q psy349 86 SLITNMIMGI 95 (103)
Q Consensus 86 ~li~~Mi~G~ 95 (103)
+++.||+.|.
T Consensus 67 sli~NmI~GV 76 (79)
T d1vqoe1 67 SHIENMFHGV 76 (79)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHheeee
Confidence 5677777764
No 6
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=9.12 E-value=66 Score=18.07 Aligned_cols=10 Identities=30% Similarity=0.790 Sum_probs=6.6
Q ss_pred hhHHHHHHHH
Q psy349 86 SLITNMIMGI 95 (103)
Q Consensus 86 ~li~~Mi~G~ 95 (103)
+++.||+.|.
T Consensus 66 sli~Nmi~GV 75 (78)
T d2zjre2 66 TLVANAVKGV 75 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHheeee
Confidence 4677777664
No 7
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=8.38 E-value=74 Score=17.78 Aligned_cols=10 Identities=50% Similarity=0.949 Sum_probs=6.8
Q ss_pred hhHHHHHHHH
Q psy349 86 SLITNMIMGI 95 (103)
Q Consensus 86 ~li~~Mi~G~ 95 (103)
+++.||+.|.
T Consensus 63 sli~Nmi~GV 72 (75)
T d1rl6a1 63 SLLANMVEGV 72 (75)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhceee
Confidence 5677777774
No 8
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.06 E-value=77 Score=18.01 Aligned_cols=10 Identities=50% Similarity=0.793 Sum_probs=6.6
Q ss_pred hhHHHHHHHH
Q psy349 86 SLITNMIMGI 95 (103)
Q Consensus 86 ~li~~Mi~G~ 95 (103)
+++.||+.|.
T Consensus 75 slI~Nmi~GV 84 (87)
T d2cqla1 75 SHVQNMIKGV 84 (87)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhheeee
Confidence 4567777764
No 9
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}
Probab=7.64 E-value=72 Score=18.13 Aligned_cols=10 Identities=30% Similarity=0.962 Sum_probs=6.3
Q ss_pred hhHHHHHHHH
Q psy349 86 SLITNMIMGI 95 (103)
Q Consensus 86 ~li~~Mi~G~ 95 (103)
+++.||+.|.
T Consensus 69 sli~NmI~GV 78 (81)
T d2qamg1 69 ALLNSMVIGV 78 (81)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHheeee
Confidence 4566777664
No 10
>d1yl7a2 d.81.1.3 (A:106-214) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.57 E-value=58 Score=19.62 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=17.8
Q ss_pred hhcCCCCchHHHHHHHHHHHHhh
Q psy349 11 VEEDPGGGNLITFSQFAFIALHG 33 (103)
Q Consensus 11 ~~~~p~~G~liTf~QFlfval~g 33 (103)
-|.|.++|+.++++|-+.-+.-.
T Consensus 30 ~K~DaPSGTAl~la~~i~~~~~~ 52 (109)
T d1yl7a2 30 HKADAPSGTAARTAKLIAEARKG 52 (109)
T ss_dssp TCCEESCHHHHHHHHHHHHHTTT
T ss_pred cCCCCCchhHHHHHHHHHHhhcc
Confidence 35667799999999998766544
Done!