RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy349
(103 letters)
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A*
1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A*
1kbj_A* 1qcw_A* 3ks0_A*
Length = 511
Score = 28.5 bits (64), Expect = 0.31
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 3 KSFDLTSFVEEDPGGGNLI 21
+DLT F+ PGG ++I
Sbjct: 32 YVYDLTRFLPNHPGGQDVI 50
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM;
1.20A {Homo sapiens} SCOP: d.120.1.1
Length = 82
Score = 26.9 bits (60), Expect = 0.47
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 5 FDLTSFVEEDPGGGNLI 21
FD+T FV+ PGG + +
Sbjct: 31 FDVTEFVDLHPGGPSKL 47
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM;
1.65A {Ectothiorhodospira shaposhnikovii} SCOP:
d.120.1.1
Length = 90
Score = 26.9 bits (60), Expect = 0.53
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 3 KSFDLTSFVEEDPGGGNLI 21
K +DLT +V PG ++
Sbjct: 31 KVYDLTPYVPNHPGPAGMM 49
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus}
SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A
1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A*
1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A*
1u9u_A* 1m20_A* ...
Length = 93
Score = 26.1 bits (58), Expect = 1.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 3 KSFDLTSFVEEDPGGGNLI 21
K +DLT F+EE PGG ++
Sbjct: 28 KVYDLTKFLEEHPGGEEVL 46
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme,
electron transport; HET: HEM; 1.55A {Musca domestica}
Length = 88
Score = 26.1 bits (58), Expect = 1.3
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 3 KSFDLTSFVEEDPGGGNLI 21
+D+T+F+ E PGG ++
Sbjct: 30 NVYDVTAFLNEHPGGEEVL 48
>1hko_A Cytochrome B5; electron transfer protein, heme, electron
transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1
PDB: 2i96_A*
Length = 104
Score = 26.2 bits (58), Expect = 1.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 3 KSFDLTSFVEEDPGGGNLI 21
K +DLT F+EE PGG ++
Sbjct: 32 KVYDLTKFLEEHPGGEEVL 50
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A
{Homo sapiens} PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A*
1icc_A* 1lj0_A* 2i89_A*
Length = 92
Score = 25.3 bits (56), Expect = 2.2
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 3 KSFDLTSFVEEDPGGGNLI 21
+ +D+T F+ E PGG ++
Sbjct: 33 RVYDVTRFLNEHPGGEEVL 51
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM
EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1
d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A*
3r19_A*
Length = 466
Score = 26.0 bits (57), Expect = 2.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 5 FDLTSFVEEDPGGGNLIT 22
FD+T FVE PGG + I
Sbjct: 31 FDVTDFVELHPGGPDKIL 48
>1dfm_A Endonuclease bglii; restriction endonuclease, restriction enzyme,
protein-DNA complex, hydrolase/DNA complex; HET: DNA;
1.50A {Bacillus subtilis} SCOP: c.52.1.5 PDB: 1d2i_A*
1es8_A
Length = 223
Score = 25.5 bits (55), Expect = 3.4
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 67 NYAFDFNIAMPLHMIFRAGSLITNMIMGIIIL 98
NY F N + + ++ I M + I+
Sbjct: 98 NYPFLLNNTVRSELFHKSNMDIDEEGMKVAII 129
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown
function, HERC2 cytochrome domain, ligase binding,
phosphoprotein; NMR {Homo sapiens}
Length = 112
Score = 24.8 bits (54), Expect = 4.8
Identities = 3/19 (15%), Positives = 9/19 (47%)
Query: 3 KSFDLTSFVEEDPGGGNLI 21
K +D+ F + +++
Sbjct: 47 KVYDIKDFQTQSLTENSIL 65
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox,
heme, endoplasmic reticulu flavoprotein, iron,
metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A
{Homo sapiens}
Length = 88
Score = 24.5 bits (54), Expect = 4.9
Identities = 4/19 (21%), Positives = 12/19 (63%)
Query: 3 KSFDLTSFVEEDPGGGNLI 21
++++ ++E PGG + +
Sbjct: 29 FVYNVSPYMEYHPGGEDEL 47
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron
transport; HET: HEM; 1.80A {Ascaris suum}
Length = 82
Score = 23.8 bits (52), Expect = 8.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 3 KSFDLTSFVEEDPGG 17
+ D+TSF +E PGG
Sbjct: 27 EVHDMTSFYKEHPGG 41
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase,
cell WALL, peptidoglycan synthesis, vancomycin, ADP
binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP:
c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 24.4 bits (54), Expect = 9.1
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 4/27 (14%)
Query: 11 VEEDPGGGNLITFSQ----FAFIALHG 33
DP ++ FIALHG
Sbjct: 38 YPVDPKEVDVTQLKSMGFQKVFIALHG 64
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A
Length = 317
Score = 24.4 bits (54), Expect = 9.2
Identities = 9/27 (33%), Positives = 9/27 (33%), Gaps = 4/27 (14%)
Query: 11 VEEDPGGGNLITFSQ----FAFIALHG 33
DP L AF ALHG
Sbjct: 49 HPFDPAERPLSALKDEGFVRAFNALHG 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.334 0.146 0.453
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,628,090
Number of extensions: 83735
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 17
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (23.3 bits)