RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy349
         (103 letters)



>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus
          thermophilus [TaxId: 274]}
          Length = 136

 Score = 23.2 bits (50), Expect = 7.3
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 17 GGNLITFSQFAFIALHGFVFTSK 39
          GG+ + F  +  +AL     T++
Sbjct: 18 GGDYVAFGDYGLVALEPAWITAQ 40


>d1ylea1 d.108.1.8 (A:1-338) Arginine N-succinyltransferase, alpha
           chain, AstA {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 338

 Score = 23.1 bits (50), Expect = 8.1
 Identities = 5/24 (20%), Positives = 8/24 (33%)

Query: 16  GGGNLITFSQFAFIALHGFVFTSK 39
               L +  +  F+A H   F   
Sbjct: 136 VYAELNSRGRLLFMASHPERFADA 159


>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId:
           287]}
          Length = 292

 Score = 23.2 bits (50), Expect = 9.1
 Identities = 10/70 (14%), Positives = 23/70 (32%)

Query: 19  NLITFSQFAFIALHGFVFTSKFGTAKPHIKVWDYMLLVVMFFITNVCNNYAFDFNIAMPL 78
            L+       + L   V  S  G A+  +    ++   +   +      Y  DF+  +  
Sbjct: 64  QLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGS 123

Query: 79  HMIFRAGSLI 88
               + G+ +
Sbjct: 124 ASQRQTGASV 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.146    0.453 

Gapped
Lambda     K      H
   0.267   0.0633    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 403,834
Number of extensions: 16732
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 4
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 47 (22.1 bits)