BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3490
(88 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 105 bits (262), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 60/71 (84%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
V + K KGEILGVVIVESGWGS+LPTV+IAN+ G A + G+LNIGDQI+++NG SLVG
Sbjct: 5 VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 64
Query: 72 LPLSTCQTYIK 82
LPLSTCQ+ IK
Sbjct: 65 LPLSTCQSIIK 75
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid
Beta A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 105 bits (261), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 62/75 (82%)
Query: 8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
+S V + K KGEILGVVIVESGWGS+LPTV+IAN+ G A + G+LNIGDQI+++NG
Sbjct: 5 SSGDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 64
Query: 68 SLVGLPLSTCQTYIK 82
SLVGLPLSTCQ+ IK
Sbjct: 65 SLVGLPLSTCQSIIK 79
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 60/71 (84%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
V + K KGEILGVVIVESGWGS+LPTV+IAN+ G A + G+LNIGDQI+++NG SLVG
Sbjct: 5 VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 64
Query: 72 LPLSTCQTYIK 82
LPLSTCQ+ IK
Sbjct: 65 LPLSTCQSIIK 75
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 88.2 bits (217), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/67 (65%), Positives = 55/67 (82%), Gaps = 3/67 (4%)
Query: 16 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 75
K KGEILGVV+VES S+LPTV++AN+ G AAR G+L+IGDQI+++NG SLVGLPL+
Sbjct: 199 KHKGEILGVVVVES---SILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLA 255
Query: 76 TCQTYIK 82
TCQ IK
Sbjct: 256 TCQGIIK 262
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 53/71 (74%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
V + K +GE LGV +VESGWGS+LPT VIANL G A R G L+IGD++ A+NG SLVG
Sbjct: 13 VHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVG 72
Query: 72 LPLSTCQTYIK 82
LPL+ CQ ++
Sbjct: 73 LPLAACQAAVR 83
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 16 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 75
K G LG+ I SG ++I++L G A R G ++IGD+I+A+N SL G PLS
Sbjct: 12 KRYGGPLGITI--SGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLS 69
Query: 76 TC 77
Sbjct: 70 EA 71
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 12 VVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
VV+ + + E G VI+ ESG +P I + A RC +L +GD+I+AVN
Sbjct: 14 VVIHRKENEGFGFVIISSLNRPESGSTITVPHK-IGRIIDGSPADRCAKLKVGDRILAVN 72
Query: 66 GVSLVGLPLSTCQTYIK 82
G S++ +P + IK
Sbjct: 73 GQSIINMPHADIVKLIK 89
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues
451-549)
Length = 121
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
+ + N+ P GAA + G+L GD++I VNGV LVG
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVG 93
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The
Fras1 Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The
Fras1 Peptide
Length = 200
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
S +V + K +G LG+ + SG ++NL G AAR QL++GD I AVNG++
Sbjct: 8 STVVELMKKEGTTLGLTV--SGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGIN 65
Query: 69 L 69
L
Sbjct: 66 L 66
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
VVI + P G A R G + GD++++V+G+ L+G + + +K
Sbjct: 137 VVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK 181
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 31 VLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 86
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 22 LGVVIVESGWGS---MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
LG IV G+GS LP + + + GAA+ G+L GDQIIAVNG SL G+
Sbjct: 38 LGFSIV-GGYGSPHGDLP-IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGV 89
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 14 VPKAKGEILGVVIVESGWGS----MLPT---VVIANLAPAGAAARCGQLNIGDQIIAVNG 66
+ KA GE LG+ I G PT + I+ ++P GAA R G+L +G +++ VN
Sbjct: 15 IQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQ 74
Query: 67 VSLVGL 72
SL+GL
Sbjct: 75 QSLLGL 80
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 6 VLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 61
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+ + + GAA R G++ + DQI+ V+G+SLVG+ + T ++
Sbjct: 37 IFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR 81
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues
450-558)
Length = 111
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
+ + N+ P GAA + G+L GD++I VNGV L G
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 74
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 22 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
LG+ IV G + L +VI + GAAAR G+L GDQI+ VNGV L
Sbjct: 30 LGLSIV-GGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDL 76
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+ + + GAA R G++ + DQI+ V+G+SLVG+ + T ++
Sbjct: 113 IFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR 157
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 13 VLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 68
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
P + I L P AA G+L++GD+I+ VNG SL+GL
Sbjct: 36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGL 72
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
+ + N+ P GAA + G+L GD++I VNGV L G
Sbjct: 35 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 68
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
H T +IV + KA+ LG + + + +V+I+ + GAA + G L+ GD+++
Sbjct: 20 HYGGETVKIVRIEKARDIPLGATVR-----NEMDSVIISRIVKGGAAEKSGLLHEGDEVL 74
Query: 63 AVNGVSLVG 71
+NG+ + G
Sbjct: 75 EINGIEIRG 83
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
+S +V +PK E LG I+ G + I+ + P G A R G L GDQ+++VNGV
Sbjct: 5 SSGVVELPKTD-EGLGFNIM--GGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGV 61
Query: 68 SLVG 71
S+ G
Sbjct: 62 SVEG 65
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+ + + GAA R G++ + DQI+ V+G+SLVG+ + T ++
Sbjct: 42 IFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR 86
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
+S +V K LG+ I E G + P I + G+A CGQL +G I+ VNG+
Sbjct: 5 SSGTLVRVKKSAATLGIAI-EGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGL 63
Query: 68 SLVG 71
+L G
Sbjct: 64 TLRG 67
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
+ + ++ GAA++ G+L + DQ+IAVNG SL+G
Sbjct: 38 IFVKSIINGGAASKDGRLRVNDQLIAVNGESLLG 71
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
Length = 106
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 3 HLNPVTSEIVVVPKAKGEILGVVIVES-GWGSMLPTVVIANLAPAGAAARCGQLNIGDQI 61
H P EI+ V K +G+ IV + G G + + ++ GAA G+L GDQ+
Sbjct: 7 HKEP---EIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQL 63
Query: 62 IAVNGVSLVGL 72
++V+G SLVGL
Sbjct: 64 LSVDGRSLVGL 74
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 22 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
LG+ IV G ++L ++I + GAA + G+L GDQI+ VNG+ L
Sbjct: 17 LGLSIV-GGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDL 63
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
+ + ++ GAA++ G+L + DQ+IAVNG SL+G
Sbjct: 41 IFVKSIINGGAASKDGRLRVNDQLIAVNGESLLG 74
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 10 EIVVVPKAKGEILGVVIVES-GWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
EI+ V K +G+ IV + G G + + ++ GAA G+L GDQ+++V+G S
Sbjct: 5 EIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRS 64
Query: 69 LVGLP 73
LVGL
Sbjct: 65 LVGLS 69
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 10 EIVVVPKAKGEILGVVIVES-GWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
EI+ V K +G+ IV + G G + + ++ GAA G+L GDQ+++V+G S
Sbjct: 5 EIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRS 64
Query: 69 LVGLP 73
LVGL
Sbjct: 65 LVGLS 69
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery
Of Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 10 EIVVVPKAKGEILGVVIVES-GWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
EI+ V K +G+ IV + G G + + ++ GAA G+L GDQ+++V+G S
Sbjct: 11 EIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRS 70
Query: 69 LVGL 72
LVGL
Sbjct: 71 LVGL 74
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
+ + + P GAA G+++ GD+++AVNGVSL G
Sbjct: 39 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 72
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
+ + + P GAA G+++ GD+++AVNGVSL G
Sbjct: 42 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 75
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 45 PAGAAARCGQLNIGDQIIAVNGVSLVG 71
P GAA G+++ GD+++AVNGVSL G
Sbjct: 51 PQGAAESDGRIHKGDRVLAVNGVSLEG 77
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI 81
P V I + P G + G+L GDQ++++N S++G+ ++ I
Sbjct: 41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSII 86
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 2 LHLNPVTSEIVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNI 57
L+ + ++V + K GE LG+ + W LP VI+ + P G +R G++
Sbjct: 18 LYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWD--LPIYVIS-VEPGGVISRDGRIKT 74
Query: 58 GDQIIAVNGVSLVGLPLSTCQTYIK 82
GD ++ V+GV L + S +K
Sbjct: 75 GDILLNVDGVELTEVSRSEAVALLK 99
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
+ + + P GAA G+++ GD+++AVNGVSL G
Sbjct: 34 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 67
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH 86
+ + ++ + A G++ IGDQIIAV+G +L G T Q ++V H
Sbjct: 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGF---TNQQAVEVLRH 80
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
Length = 97
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
VVI ++ P G A R G + GD++++V+G+ L+G + + +K
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK 78
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 45 PAGAAARCGQLNIGDQIIAVNGVSLVG 71
P GAA G+++ GD+++AVNGVSL G
Sbjct: 42 PQGAAESDGRIHKGDRVLAVNGVSLEG 68
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With
Ra-Gef2 Peptide
Length = 96
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 45 PAGAAARCGQLNIGDQIIAVNGVSLVG 71
P GAA G+++ GD+++AVNGVSL G
Sbjct: 42 PQGAAESDGRIHKGDRVLAVNGVSLEG 68
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84
P + I+ L P G A G L + D++I VNG+ + G L + N
Sbjct: 38 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVAN 86
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
+ ++ +A GAA R G L +GD+++++NGV +
Sbjct: 40 IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVT 72
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ + + GAA + G+L IGD+++AVN VSL
Sbjct: 34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSL 66
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84
P + I+ L P G A G L + D++I VNG+ + G L + N
Sbjct: 40 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVAN 88
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 33.9 bits (76), Expect = 0.025, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
P++ I + P GAAA+ G+L + D I+ VN V +
Sbjct: 89 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 122
Score = 33.5 bits (75), Expect = 0.028, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLP---TVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
EI ++ KG LG I +P ++ + + GAA + G+L IGD+I+AVN
Sbjct: 157 EIKLIKGPKG--LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 214
Query: 67 VSL 69
V L
Sbjct: 215 VGL 217
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
IV+ + G +V E G G + I+ + G A G+L GDQI++VNGV L
Sbjct: 311 IVIHRGSTGLGFNIVGGEDGEG-----IFISFILAGGPADLSGELRKGDQILSVNGVDL 364
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84
P + I+ L P G A G L + D++I VNG+ + G L + N
Sbjct: 66 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVAN 114
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
+ I ++ GAA + G+L + DQ+IAVNG +L+G
Sbjct: 57 IFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLG 90
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of
Numb-Binding Protein 2
Length = 95
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ + + GE LG+ +V + P V I +L G AA+ G+L+ D+++A+NG L
Sbjct: 6 QVALHKRDSGEQLGIKLVRR---TDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDL 62
Query: 70 -VGLPLSTCQ 78
G P Q
Sbjct: 63 KYGTPELAAQ 72
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+ + LA G A R G++ IGD+I+ +NG + + S IK
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIK 95
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 75
P + I+ L P G A G L + D++I VNG+ + G L
Sbjct: 66 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLD 105
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
P++ I + P GAAA+ G+L + D I+ VN V +
Sbjct: 32 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 65
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 20 EILGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 75
E LG+ I+ G G+ + + + + GAA R G++ + D ++ V+G SLVG+ S
Sbjct: 15 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS 74
Query: 76 TCQTYIK 82
+ ++
Sbjct: 75 FAASVLR 81
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
P++ I + P GAAA+ G+L + D I+ VN V +
Sbjct: 42 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 75
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ + + GAA + G+L IGD+I+AVN V L
Sbjct: 138 SIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 170
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
P++ I + P GAAA+ G+L + D I+ VN V +
Sbjct: 31 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
P++ I + P GAAA+ G+L + D I+ VN V +
Sbjct: 31 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHLC 88
P + I+++ P +A G L IGDQI+ VNGV L +K + L
Sbjct: 27 PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLT 78
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
P++ I + P GAAA+ G+L + D I+ VN V +
Sbjct: 35 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 68
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ + + GAA + G+L IGD+I+AVN V L
Sbjct: 131 SIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 163
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
P++ I + P GAAA+ G+L + D I+ VN V +
Sbjct: 32 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 65
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ + + GAA + G+L IGD+I+AVN V L
Sbjct: 128 SIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 160
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHLC 88
P + I+++ P +A G L IGDQI+ VNGV L +K + L
Sbjct: 41 PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLT 92
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 2 LHLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNI 57
L L PV E E LG+ I+ G G+ + + + + GAA R G++ +
Sbjct: 79 LELFPVELE------KDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQV 132
Query: 58 GDQIIAVNGVSLVGLPLSTCQTYIK 82
D ++ V+G SLVG+ S + ++
Sbjct: 133 NDLLVEVDGTSLVGVTQSFAASVLR 157
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
++ + + GAA + G+L IGD+++AVN V+L + T +K
Sbjct: 33 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALK 78
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 2 LHLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNI 57
L L PV E E LG+ I+ G G+ + + + + GAA R G++ +
Sbjct: 79 LELFPVELE------KDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQV 132
Query: 58 GDQIIAVNGVSLVGLPLSTCQTYIK 82
D ++ V+G SLVG+ S + ++
Sbjct: 133 NDLLVEVDGTSLVGVTQSFAASVLR 157
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 77
P V+I++L GAA + G + GD I+AVN LV L +
Sbjct: 26 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSA 67
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
Length = 120
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 2 LHLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTV--VIANLAPAGAAARCGQLNIGD 59
L+ + V + K + LG+ I G GS L V IA + P G AA+ +L +GD
Sbjct: 18 LYFQSMGLRTVEMKKGPTDSLGISIA-GGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGD 76
Query: 60 QIIAVNGVSLVGL 72
+I+ + G S G+
Sbjct: 77 RIVTICGTSTEGM 89
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 77
P V+I++L GAA + G + GD I+AVN LV L +
Sbjct: 28 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSA 69
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ + ++ GAA + G+L IGD+++AVN V L
Sbjct: 34 SIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGL 66
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 32.3 bits (72), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
+ + LA G A R G++ +GDQII +NG S
Sbjct: 38 LYVLRLAEDGPAIRNGRMRVGDQIIEINGES 68
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 35 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 75
+P + I+ L P G A G L + D+++ VNG+ + G L
Sbjct: 64 VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLD 104
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated
Peptide
Length = 127
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 77
P V+I++L GAA + G + GD I+AVN LV L +
Sbjct: 33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSA 74
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84
+ + L G A RCG+L +GD ++ +NG S GL + I+
Sbjct: 40 LAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAG 86
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 32.0 bits (71), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ + + GAA + G+L IGD+I+AVN V L
Sbjct: 34 SIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 66
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 32.0 bits (71), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 39 VIANLAPAGAAARCGQLNIGDQIIAVNGV 67
+I+ + A RCG L IGD+++A+NG+
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGI 67
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 32.0 bits (71), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ + + GAA + G+L IGD+++AVN V+L
Sbjct: 39 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVAL 71
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGL 66
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 39 VIANLAPAGAAARCGQLNIGDQIIAVNGV 67
+I+ + A RCG L IGD+++A+NG+
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGI 67
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse
Glutamate Receptor Interacting Protein 1a-L (Grip1)
Homolog
Length = 122
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 39 VIANLAPAGAAARCGQLNIGDQIIAVNGV 67
+I+ + A RCG L IGD+++A+NG+
Sbjct: 48 LISYIEADSPAERCGVLQIGDRVMAINGI 76
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
+ I ++ P GAA G+L GD++I+V+G ++G
Sbjct: 29 IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIG 62
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
S +V K E +G+ + + L ++A + G R G L++GD+I +NG+S
Sbjct: 2 SRLVQFQKNTDEPMGITL----KMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGIS 57
Query: 69 LVGLPLSTCQTYIK 82
+ + Q ++
Sbjct: 58 VANQTVEQLQKMLR 71
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 43 LAPAGAAARCGQLNIGDQIIAVNGVS 68
+ P A RCG L +GD+++++NG++
Sbjct: 52 IEPDSPAERCGLLQVGDRVLSINGIA 77
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 5 NPVTSEIVVVPKAKG-EILGVVIVESGWGSMLP---TVVIANLAPAGAAARCGQLNIGDQ 60
PV+ +I+ + KG + LG I +P ++ + + GAA + G+L IGD+
Sbjct: 4 KPVSEKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDK 63
Query: 61 IIAVNGVSL 69
++AVN V L
Sbjct: 64 LLAVNNVCL 72
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Inad- Like Protein
Length = 111
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
E+ ++ G G+V G VV+ + P G A R G+L GD I+ + G ++
Sbjct: 18 EVELINDGSGLGFGIV------GGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNV 71
Query: 70 VGL 72
G+
Sbjct: 72 QGM 74
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ I + GAA + G+L IGD+++AVN +L
Sbjct: 34 SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 66
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 66
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 42 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 74
>pdb|1V62|A Chain A, Solution Structure Of The 3rd Pdz Domain Of Grip2
Length = 117
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 6 PVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
P+ EIV P G LG+ + + + + I + PA R G L+ GD I++++
Sbjct: 16 PLMVEIVKTP---GSALGISLTTTSLRNK-SVITIDRIKPASVVDRSGALHPGDHILSID 71
Query: 66 GVSL 69
G S+
Sbjct: 72 GTSM 75
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 27 VESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSL 69
V+ G+ +P V+++ +AP A C +LN GDQ++ +NG +
Sbjct: 33 VKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDI 75
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 27 VESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSL 69
V+ G+ +P V+++ +AP A C +LN GDQ++ +NG +
Sbjct: 35 VKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDI 77
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human
Scrib1
Length = 97
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
+ I+ ++ G AAR G + +GD+++ VNGV+L G
Sbjct: 36 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQG 68
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 27 VESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSL 69
V+ G+ +P V+++ +AP A C +LN GDQ++ +NG +
Sbjct: 22 VKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDI 64
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In
Human Cdna, Kiaa1095
Length = 107
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 27 VESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
V++ GS + ++ + +G AA+ G L I D+II VNG L
Sbjct: 32 VDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDL 74
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 29 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 61
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 30 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 62
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 102
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
+ ++ + GAAA G+L GD+I++VNG L L
Sbjct: 41 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 75
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 101
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
+ ++ + GAAA G+L GD+I++VNG L L
Sbjct: 39 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 73
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
IV + K G LG I G S L + I+ + P A R G L GDQ++AVN V
Sbjct: 17 RIVTLKKPPGAQLGFNI-RGGKASQL-GIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDF 73
Query: 70 VGLPLSTCQTYIKVNHHLC 88
+ S +K +
Sbjct: 74 QDIEHSKAVEILKTAREIS 92
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
+++A + GAA R G +++GD++ VNG+
Sbjct: 30 IIVARIXRGGAADRSGLIHVGDELREVNGI 59
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
+ I+ ++ G AAR G + +GD+++ VNGV+L G
Sbjct: 48 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQG 80
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 27 VESGWGSML-------PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQT 79
+ESG+G + ++I + G+A R G+L+ GD+++ V+G+ + G T +
Sbjct: 18 MESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAG---KTHRY 74
Query: 80 YIKVNHH 86
I + HH
Sbjct: 75 VIDLMHH 81
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNG 66
+ I + P A CG+L +GD+I+++NG
Sbjct: 39 IFIKGIVPDSPAHLCGRLKVGDRILSLNG 67
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 6 PVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
PV VV +A G LG+ I + G + +P ++I+ + P AA + L +GD I++VN
Sbjct: 3 PVRRVRVVKQEAGG--LGISI-KGGRENRMP-ILISKIFPGLAADQSRALRLGDAILSVN 58
Query: 66 GVSL 69
G L
Sbjct: 59 GTDL 62
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Inad- Like Protein
Length = 129
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 16 KAKGEILGVVIVESGWGSMLPT-----VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
+ G+ LG+ IV G+ T + + ++ P AA G + + D+I+AV+GV++
Sbjct: 23 RKDGQSLGIRIV--GYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQ 80
Query: 71 GL 72
G
Sbjct: 81 GF 82
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 22 LGVVIV--ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
LG IV E G G + I+ + G A G+L GDQI++VNGV L
Sbjct: 27 LGFNIVGGEDGEG-----IFISFILAGGPADLSGELRKGDQILSVNGVDL 71
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ + + GAA + G+L +GD+++ VN SL
Sbjct: 55 SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 87
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
P + I + P GAAA G+L + D I+ VN V +
Sbjct: 39 PGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDV 72
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 22 LGVVIV--ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
LG IV E G G + ++ + G A G+L GDQI++VNG+ L G
Sbjct: 16 LGFNIVGGEDGEG-----IFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 62
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
+ ++ + GAAA G+L GD+I++VNG L L
Sbjct: 49 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 83
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 39 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+A + G R G L++GD+I+ +NG ++ + Q +K
Sbjct: 39 TVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMK 82
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 27 VESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+E G S + VV++ + GAA R G + GD+I+A+NG + L+ + ++
Sbjct: 34 LEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQ 89
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
+ I+ + P AA+ G++ GD+II +NG+ +
Sbjct: 50 IYISEIDPNSIAAKDGRIREGDRIIQINGIEV 81
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 17 AKGEILGVVI---VESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
G LG+ I E G G + I + P G+ A L +GDQI+ VNG S + +
Sbjct: 29 GDGRSLGLTIRGGAEYGLG-----IYITGVDP-GSEAEGSGLKVGDQILEVNGRSFLNIL 82
Query: 74 LSTCQTYIKVNHHL 87
+K + HL
Sbjct: 83 HDEAVRLLKSSRHL 96
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
+ I+ + G A G+L GDQI++VNGV L
Sbjct: 37 IFISFILAGGPADLSGELRKGDQILSVNGVDL 68
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 22 LGVVIV--ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
LG I+ E G G + I+ + G A G+L GDQI++VNGV L
Sbjct: 27 LGFNIIGGEDGEG-----IFISFILAGGPADLSGELRKGDQILSVNGVDL 71
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 22 LGVVIV--ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
LG IV E G G + I+ + G A G+L GDQI++VNGV L
Sbjct: 19 LGFNIVGGEXGEG-----IFISFILAGGPADLSGELRKGDQILSVNGVDL 63
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 40 IANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+A + G R G L++GD+I+ +NG ++ + Q +K
Sbjct: 40 VARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMK 82
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83
++ + + P G AA G++ IGD+++ +N L G IK
Sbjct: 52 SIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKT 98
>pdb|2E7K|A Chain A, Solution Structure Of The Pdz Domain From Human Maguk
P55 Subfamily Member 2
Length = 91
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 8 TSEIVVVPKAKGEILGVVI-VESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
+ +V + K GE LGV VE G +VIA + G A+ G L++GD I VNG
Sbjct: 6 SGRMVGIRKTAGEHLGVTFRVEGG------ELVIARILHGGMVAQQGLLHVGDIIKEVNG 59
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
Length = 92
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
+++ +V AK E G+ + + + ++ AAR G + GD ++ +NG
Sbjct: 4 TKVTLVKSAKNEEYGL--------RLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTV 55
Query: 69 LVGLPLSTCQTYIK 82
+ L+ +T I+
Sbjct: 56 TENMSLTDAKTLIE 69
>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1
pdb|2RCZ|B Chain B, Structure Of The Second Pdz Domain Of Zo-1
Length = 81
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
S++ +V K E G+ + + + ++ AAR G + GD ++ +NG
Sbjct: 2 SKVTLVKSRKNEEYGL--------RLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTV 53
Query: 69 LVGLPLSTCQTYIK 82
+ L+ +T I+
Sbjct: 54 TENMSLTDAKTLIE 67
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
P ++ + P GAA R G + GD+I+ VNGV++ G
Sbjct: 43 PLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEG 77
>pdb|2EAQ|A Chain A, Crystal Structure Of Pdz Domain Of Kiaa0858 (Lim),
Ms0793 From Homo Sapiens
Length = 90
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 35 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
+P + +A++ AG+ A QL + D+IIA+N
Sbjct: 27 IPGIFVASVE-AGSPAEFSQLQVDDEIIAINNTKF 60
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84
IA + P G+A + G+L G Q++ NG+ L T +TY +V
Sbjct: 51 AYIAKILPGGSAEQTGKLMEGMQVLEWNGIPL------TSKTYEEVQ 91
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
P ++ + P GAA R G + GD+I+ VNGV++ G
Sbjct: 43 PLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEG 77
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
Length = 101
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
P ++ + P GAA R G + GD+I+ VNGV++ G
Sbjct: 43 PLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEG 77
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 31 WGSMLPT-VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+G L + + + ++ AAR G + GD ++ +NG + L+ +T I+
Sbjct: 14 YGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIE 66
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 19 GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL 74
G + GV + + G VV+ AP G A + G GD I+ V+G ++ GL L
Sbjct: 82 GSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGA-RAGDVIVTVDGTAVKGLSL 136
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 22 LGVVIV--ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
LG IV E G G + ++ + G A G+L GD+I++VNGV+L
Sbjct: 25 LGFNIVGGEDGEG-----IFVSFILAGGPADLSGELRRGDRILSVNGVNL 69
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase
Activating Protein 21
Length = 126
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 35 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 75
+ T+ + + G A G L GD+II VNG S++G S
Sbjct: 60 MDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYS 99
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
P + I + P GAAA G+L + D ++ VN V +
Sbjct: 34 PGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDV 67
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIA--NLAPAGAAARCGQLNIGDQIIAVNGVS 68
+ ++ K +G LG + G+ L VI + P G A++ G + G++++++NG S
Sbjct: 18 VTILHKEEGAGLGFSLA---GGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKS 74
Query: 69 LVG 71
L G
Sbjct: 75 LKG 77
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 22 LGVVIV--ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
LG IV E G G + ++ + G A G+L GD+I++VNGV+L
Sbjct: 28 LGFNIVGGEDGEG-----IFVSFILAGGPADLSGELRRGDRILSVNGVNL 72
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 22 LGVVIV--ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
LG IV E G G + I+ + G A G+L GD+II+VN V L
Sbjct: 20 LGFNIVGGEDGEG-----IFISFILAGGPADLSGELRKGDRIISVNSVDL 64
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho
Guanine Nucleotide Exchange Factor 11
Length = 93
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNG 66
V++ ++ P GAA + G + GD+II VNG
Sbjct: 31 VLVQSVRPGGAAMKAG-VKEGDRIIKVNG 58
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
+ I++L G A G L +GD+I+ +NG S+
Sbjct: 112 LFISHLIKGGQADSVG-LQVGDEIVRINGYSI 142
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
V V KA LG+ I + G + +P ++I+ + AA + L +GD I++VNG L
Sbjct: 4 VTVRKADAGGLGISI-KGGRENKMP-ILISKIFKGLAADQTEALFVGDAILSVNGEDL 59
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In
Complex With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
V V KA LG+ I + G + +P ++I+ + AA + L +GD I++VNG L
Sbjct: 4 VTVRKADAGGLGISI-KGGRENKMP-ILISKIFKGLAADQTEALFVGDAILSVNGEDL 59
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
V V KA LG+ I + G + +P ++I+ + AA + L +GD I++VNG L
Sbjct: 8 VTVRKADAGGLGISI-KGGRENKMP-ILISKIFKGLAADQTEALFVGDAILSVNGEDL 63
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 22 LGVVIV--ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
LG IV E G G + I+ + G A G+L GD+II+VN V L
Sbjct: 17 LGFNIVGGEDGEG-----IFISFILAGGPADLSGELRKGDRIISVNSVDL 61
>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom
Family Member 4
Length = 100
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
+ ++ + G AA ++ GD+++ +NG L G
Sbjct: 37 LTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG 70
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 40 IANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
+ ++ P G AA+ G++ GD I+ +N V ++G
Sbjct: 48 VKSVIPDGPAAQDGKMETGDVIVYINEVCVLG 79
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 14 VPKAKGEILGVVIVESGWGSMLPT-VVIANLAPAGAAARCGQLNIGDQIIAVNG 66
+ K G+ LG+ IV G T V ++++ G A G+L GDQI+ VNG
Sbjct: 10 LQKKPGKGLGLSIV----GKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNG 59
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ I + GAAA+ G+L + D I+ VN V +
Sbjct: 42 SIFITKIITGGAAAQDGRLRVNDCILRVNEVDV 74
>pdb|1WF7|A Chain A, Solution Structure Of The Pdz Domain Of Enigma Homologue
Protein
Length = 103
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83
+ I++L G A++ + IGD +++++G+S G+ Q IK
Sbjct: 31 LTISSLKDGGKASQA-HVRIGDVVLSIDGISAQGMTHLEAQNKIKA 75
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVN 65
+VI +L G A R G L GD++++VN
Sbjct: 46 IVIRSLVADGVAERSGGLLPGDRLVSVN 73
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Query: 44 APAGAAARCGQLNIGDQIIAVNGVSLVG 71
+PA AAA L GD+++ VNGV++ G
Sbjct: 36 SPAEAAA----LRAGDRLVEVNGVNVEG 59
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 75
+ + +L P AAA G++ D+I+ V+ V++ G+ S
Sbjct: 46 IYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQS 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,552,134
Number of Sequences: 62578
Number of extensions: 81564
Number of successful extensions: 323
Number of sequences better than 100.0: 160
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 167
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)