Query psy3490
Match_columns 88
No_of_seqs 122 out of 1014
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 18:03:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00595 PDZ: PDZ domain (Also 99.7 1E-16 2.2E-21 88.1 9.7 73 12-86 2-74 (81)
2 KOG3550|consensus 99.6 9.2E-16 2E-20 92.8 7.2 73 10-85 92-164 (207)
3 KOG3605|consensus 99.5 7.5E-15 1.6E-19 104.3 4.8 85 2-86 639-723 (829)
4 KOG3209|consensus 99.5 4.2E-14 9E-19 101.5 8.0 74 9-85 754-827 (984)
5 KOG3209|consensus 99.5 9.5E-14 2.1E-18 99.7 7.2 71 11-85 901-972 (984)
6 KOG3551|consensus 99.5 4.3E-14 9.4E-19 95.9 5.0 75 10-86 86-160 (506)
7 KOG3549|consensus 99.4 2.5E-13 5.3E-18 91.5 6.4 75 10-86 56-130 (505)
8 cd00992 PDZ_signaling PDZ doma 99.4 8.4E-12 1.8E-16 68.1 10.5 73 10-85 2-74 (82)
9 KOG3553|consensus 99.4 8.8E-13 1.9E-17 74.7 4.2 63 21-85 36-107 (124)
10 KOG3651|consensus 99.3 8.1E-12 1.8E-16 83.0 8.4 74 10-85 6-79 (429)
11 cd00136 PDZ PDZ domain, also c 99.3 2.8E-11 6.1E-16 64.3 8.6 60 21-85 2-61 (70)
12 KOG3606|consensus 99.3 4.2E-12 9.2E-17 83.1 6.2 84 3-86 153-244 (358)
13 KOG3571|consensus 99.3 5.3E-12 1.1E-16 88.1 6.4 75 11-85 250-326 (626)
14 smart00228 PDZ Domain present 99.3 2.8E-10 6.1E-15 62.1 10.3 72 10-85 3-74 (85)
15 KOG1892|consensus 99.2 2.7E-11 5.8E-16 89.7 7.4 77 10-86 933-1010(1629)
16 KOG3580|consensus 99.1 4.1E-10 8.9E-15 80.6 7.0 81 3-86 3-88 (1027)
17 cd00988 PDZ_CTP_protease PDZ d 99.0 5.7E-09 1.2E-13 57.2 7.8 57 21-83 3-59 (85)
18 PF13180 PDZ_2: PDZ domain; PD 99.0 6.5E-09 1.4E-13 57.0 7.2 56 21-82 2-57 (82)
19 KOG3542|consensus 98.9 1.7E-09 3.6E-14 78.5 5.1 75 10-87 537-612 (1283)
20 KOG3938|consensus 98.8 4.3E-09 9.4E-14 68.9 4.5 71 10-85 128-198 (334)
21 KOG0609|consensus 98.8 1.2E-08 2.7E-13 71.8 6.9 73 9-85 123-195 (542)
22 COG0793 Prc Periplasmic protea 98.8 1E-08 2.2E-13 71.1 5.9 78 3-85 82-160 (406)
23 KOG3580|consensus 98.8 1.9E-08 4.2E-13 72.2 6.7 67 10-83 409-475 (1027)
24 KOG3605|consensus 98.7 2.9E-08 6.2E-13 71.5 5.2 64 11-84 739-803 (829)
25 KOG3552|consensus 98.7 2.5E-08 5.5E-13 74.1 4.4 66 10-85 57-122 (1298)
26 cd00989 PDZ_metalloprotease PD 98.7 2.7E-07 5.8E-12 49.8 7.4 44 37-83 13-56 (79)
27 PRK11186 carboxy-terminal prot 98.7 6.5E-08 1.4E-12 70.5 6.0 78 3-85 226-309 (667)
28 PLN00049 carboxyl-terminal pro 98.6 4.7E-07 1E-11 62.5 9.0 62 21-83 86-148 (389)
29 cd00991 PDZ_archaeal_metallopr 98.6 4.3E-07 9.3E-12 49.5 6.8 45 36-83 10-54 (79)
30 cd00990 PDZ_glycyl_aminopeptid 98.6 5.5E-07 1.2E-11 48.8 6.5 44 22-71 3-46 (80)
31 TIGR00225 prc C-terminal pepti 98.5 4.4E-07 9.5E-12 61.4 7.3 57 21-83 52-108 (334)
32 cd00987 PDZ_serine_protease PD 98.4 2.3E-06 4.9E-11 47.1 6.7 44 37-83 25-68 (90)
33 cd00986 PDZ_LON_protease PDZ d 98.4 3.8E-06 8.3E-11 45.5 6.7 43 37-83 9-51 (79)
34 PF04495 GRASP55_65: GRASP55/6 98.1 2.2E-05 4.8E-10 47.3 7.3 78 3-83 5-88 (138)
35 TIGR02037 degP_htrA_DO peripla 98.0 2.3E-05 4.9E-10 54.7 6.8 45 36-83 362-406 (428)
36 TIGR00054 RIP metalloprotease 98.0 2.5E-05 5.4E-10 54.5 6.9 44 37-83 204-247 (420)
37 TIGR01713 typeII_sec_gspC gene 98.0 4.8E-05 1.1E-09 50.1 7.6 58 21-83 178-235 (259)
38 PRK10139 serine endoprotease; 98.0 2.9E-05 6.4E-10 54.7 6.9 44 37-83 391-434 (455)
39 TIGR02037 degP_htrA_DO peripla 98.0 2.5E-05 5.4E-10 54.5 6.4 44 36-82 257-300 (428)
40 PRK10139 serine endoprotease; 98.0 3.6E-05 7.8E-10 54.3 6.9 45 36-83 290-334 (455)
41 PRK10942 serine endoprotease; 97.9 4.9E-05 1.1E-09 53.8 6.9 46 36-84 408-453 (473)
42 TIGR02038 protease_degS peripl 97.9 4.2E-05 9.1E-10 52.3 6.3 45 36-83 278-322 (351)
43 PRK10898 serine endoprotease; 97.9 6.4E-05 1.4E-09 51.5 6.9 44 36-82 279-322 (353)
44 PRK10779 zinc metallopeptidase 97.9 5.7E-05 1.2E-09 53.1 6.8 44 37-83 222-265 (449)
45 PRK10942 serine endoprotease; 97.9 6.8E-05 1.5E-09 53.2 6.9 44 36-82 311-354 (473)
46 PRK10779 zinc metallopeptidase 97.7 9.9E-05 2.1E-09 51.9 5.3 34 38-72 128-161 (449)
47 TIGR03279 cyano_FeS_chp putati 97.6 6.5E-05 1.4E-09 52.7 3.5 38 40-80 2-39 (433)
48 TIGR00054 RIP metalloprotease 97.5 0.00028 6E-09 49.4 5.5 42 36-80 128-169 (420)
49 TIGR02860 spore_IV_B stage IV 97.4 0.0014 3E-08 45.8 8.1 36 46-84 123-158 (402)
50 KOG0606|consensus 97.4 0.00064 1.4E-08 52.2 6.3 72 12-85 630-706 (1205)
51 KOG1738|consensus 97.3 0.00045 9.7E-09 50.2 4.5 65 17-85 210-274 (638)
52 KOG3129|consensus 97.2 0.0014 3.1E-08 42.0 5.5 45 38-83 141-186 (231)
53 COG3975 Predicted protease wit 97.1 0.0025 5.5E-08 45.7 6.4 41 21-67 452-492 (558)
54 KOG3532|consensus 97.1 0.0031 6.7E-08 46.8 6.9 62 16-84 382-443 (1051)
55 COG0265 DegQ Trypsin-like seri 96.7 0.0096 2.1E-07 40.5 6.7 44 35-81 269-312 (347)
56 COG3480 SdrC Predicted secrete 96.4 0.012 2.6E-07 40.0 5.4 44 37-84 131-174 (342)
57 PF14685 Tricorn_PDZ: Tricorn 95.7 0.039 8.4E-07 30.8 4.6 35 37-71 13-56 (88)
58 KOG1320|consensus 95.6 0.016 3.5E-07 41.4 3.5 45 37-84 399-443 (473)
59 PF12812 PDZ_1: PDZ-like domai 95.5 0.1 2.2E-06 28.4 5.8 46 38-86 32-77 (78)
60 KOG4407|consensus 95.2 0.011 2.3E-07 46.8 1.5 48 37-85 144-191 (1973)
61 KOG4371|consensus 94.6 0.069 1.5E-06 41.5 4.5 68 12-82 1249-1316(1332)
62 PRK09681 putative type II secr 94.2 0.11 2.3E-06 34.9 4.3 46 40-85 208-256 (276)
63 KOG1421|consensus 91.1 0.51 1.1E-05 35.7 4.5 33 38-72 305-337 (955)
64 COG0750 Predicted membrane-ass 89.2 2.1 4.6E-05 29.3 6.2 33 39-72 132-164 (375)
65 COG3031 PulC Type II secretory 87.9 2 4.3E-05 28.6 5.0 26 44-70 215-240 (275)
66 KOG4407|consensus 87.4 1.2 2.6E-05 36.1 4.4 72 10-83 47-141 (1973)
67 KOG4371|consensus 85.8 0.94 2E-05 35.7 3.1 59 20-84 1158-1216(1332)
68 KOG3834|consensus 85.0 3.4 7.4E-05 29.6 5.3 56 9-64 78-137 (462)
69 KOG0792|consensus 83.1 0.74 1.6E-05 36.1 1.5 68 18-86 714-799 (1144)
70 PF11874 DUF3394: Domain of un 82.5 4.5 9.7E-05 25.7 4.6 49 10-64 94-149 (183)
71 KOG1421|consensus 80.7 5.2 0.00011 30.6 5.0 45 37-85 863-907 (955)
72 KOG3834|consensus 80.0 3.2 7E-05 29.7 3.7 45 37-82 16-60 (462)
73 KOG2921|consensus 78.6 6.2 0.00013 28.2 4.7 36 37-72 221-256 (484)
74 COG4100 Cystathionine beta-lya 69.7 4.1 8.8E-05 28.3 2.1 40 38-79 84-126 (416)
75 PRK13810 orotate phosphoribosy 64.6 12 0.00027 23.6 3.4 34 52-85 116-149 (187)
76 COG5233 GRH1 Peripheral Golgi 62.8 6.1 0.00013 27.5 1.9 31 38-69 65-95 (417)
77 PRK09203 rplP 50S ribosomal pr 62.3 7.5 0.00016 23.4 2.0 28 52-84 94-121 (138)
78 KOG1945|consensus 62.0 6.6 0.00014 27.5 1.9 64 21-84 111-178 (377)
79 cd01433 Ribosomal_L16_L10e Rib 61.3 7.4 0.00016 22.4 1.8 28 53-84 74-101 (112)
80 TIGR01164 rplP_bact ribosomal 58.2 8.6 0.00019 22.8 1.8 27 53-84 94-120 (126)
81 PRK04199 rpl10e 50S ribosomal 52.0 12 0.00026 23.5 1.8 32 50-84 121-152 (172)
82 TIGR01744 XPRTase xanthine pho 50.8 24 0.00051 22.3 3.0 31 55-85 114-144 (191)
83 PRK13812 orotate phosphoribosy 48.6 30 0.00066 21.5 3.2 34 52-85 101-134 (176)
84 PF06838 Met_gamma_lyase: Meth 46.9 10 0.00022 26.9 1.0 30 49-80 87-116 (403)
85 PRK09219 xanthine phosphoribos 46.5 27 0.00059 22.0 2.8 32 54-85 113-144 (189)
86 PTZ00173 60S ribosomal protein 46.4 18 0.00039 23.5 2.0 31 52-85 126-156 (213)
87 PRK13809 orotate phosphoribosy 45.1 36 0.00079 21.8 3.2 33 53-85 113-145 (206)
88 PRK05500 bifunctional orotidin 44.0 37 0.00079 24.8 3.4 35 51-85 386-420 (477)
89 TIGR00336 pyrE orotate phospho 43.2 36 0.00079 20.9 3.0 33 53-85 103-135 (173)
90 KOG0572|consensus 43.0 41 0.00089 24.2 3.4 29 57-85 355-383 (474)
91 COG0034 PurF Glutamine phospho 42.6 46 0.001 24.3 3.6 29 57-85 347-375 (470)
92 KOG1703|consensus 42.5 10 0.00022 27.4 0.4 59 21-83 9-67 (479)
93 COG0461 PyrE Orotate phosphori 42.1 46 0.001 21.4 3.3 35 52-86 106-140 (201)
94 COG1625 Fe-S oxidoreductase, r 40.9 27 0.00059 25.0 2.3 33 39-72 4-37 (414)
95 TIGR00279 L10e ribosomal prote 40.9 24 0.00051 22.2 1.8 31 52-85 123-153 (172)
96 PLN02293 adenine phosphoribosy 39.8 48 0.001 20.9 3.1 33 53-85 120-152 (187)
97 CHL00044 rpl16 ribosomal prote 39.0 16 0.00034 22.0 0.8 27 53-84 95-121 (135)
98 COG3823 Glutamine cyclotransfe 37.7 31 0.00066 22.9 2.0 62 4-73 116-179 (262)
99 COG0197 RplP Ribosomal protein 35.1 35 0.00076 20.9 1.9 34 46-84 91-124 (146)
100 PF01455 HupF_HypC: HupF/HypC 34.9 48 0.001 17.4 2.2 28 55-82 38-65 (68)
101 TIGR00201 comF comF family pro 34.4 54 0.0012 20.4 2.8 29 57-85 151-179 (190)
102 PRK13669 hypothetical protein; 33.2 66 0.0014 17.6 2.6 29 55-83 42-70 (78)
103 KOG3369|consensus 33.0 19 0.0004 22.9 0.5 26 49-75 47-72 (199)
104 PRK06781 amidophosphoribosyltr 32.7 69 0.0015 23.3 3.4 29 57-85 347-375 (471)
105 PRK02304 adenine phosphoribosy 30.2 72 0.0016 19.5 2.8 31 55-85 111-141 (175)
106 PRK09213 pur operon repressor; 30.2 97 0.0021 20.9 3.5 32 54-85 192-223 (271)
107 PF07591 PT-HINT: Pretoxin HIN 30.1 32 0.0007 20.3 1.2 30 35-68 61-90 (130)
108 TIGR01743 purR_Bsub pur operon 29.8 87 0.0019 21.1 3.3 32 54-85 190-221 (268)
109 PRK06388 amidophosphoribosyltr 29.6 56 0.0012 23.8 2.5 30 56-85 354-383 (474)
110 PRK00078 Maf-like protein; Rev 29.5 1.2E+02 0.0027 19.1 3.8 28 56-83 68-96 (192)
111 PRK02478 Maf-like protein; Rev 29.2 1.3E+02 0.0027 19.3 3.8 27 57-83 74-101 (199)
112 PRK12560 adenine phosphoribosy 29.0 91 0.002 19.5 3.1 31 55-85 111-141 (187)
113 TIGR01090 apt adenine phosphor 28.6 71 0.0015 19.5 2.6 31 55-85 106-136 (169)
114 KOG1712|consensus 28.3 1.2E+02 0.0026 19.2 3.5 36 50-85 114-149 (183)
115 PF00156 Pribosyltran: Phospho 28.3 65 0.0014 18.0 2.3 31 55-85 85-115 (125)
116 COG0503 Apt Adenine/guanine ph 28.2 1E+02 0.0023 19.2 3.3 32 54-85 112-143 (179)
117 TIGR00172 maf MAF protein. Thi 28.1 1.4E+02 0.003 18.8 3.8 29 55-83 66-95 (183)
118 PRK07322 adenine phosphoribosy 27.8 72 0.0016 19.7 2.5 30 56-85 118-147 (178)
119 PRK14367 Maf-like protein; Pro 27.5 1.3E+02 0.0029 19.2 3.7 28 56-83 73-101 (202)
120 PRK00032 Maf-like protein; Rev 27.5 1.4E+02 0.0031 18.8 3.8 27 57-83 68-95 (190)
121 PRK14368 Maf-like protein; Pro 27.4 1.3E+02 0.0029 19.1 3.7 28 56-83 69-97 (193)
122 PRK01839 Maf-like protein; Rev 27.1 1.4E+02 0.003 19.2 3.8 29 55-83 84-113 (209)
123 PRK14364 Maf-like protein; Pro 27.0 1.5E+02 0.0032 18.6 3.8 28 56-83 61-89 (181)
124 PRK00148 Maf-like protein; Rev 26.8 1.4E+02 0.003 19.0 3.7 29 55-83 64-93 (194)
125 cd00555 Maf Nucleotide binding 26.7 1.5E+02 0.0033 18.5 3.8 29 55-83 63-92 (180)
126 TIGR00074 hypC_hupF hydrogenas 26.6 1.2E+02 0.0025 16.4 2.9 28 55-82 36-63 (76)
127 PRK03760 hypothetical protein; 26.5 62 0.0013 18.9 1.9 24 37-62 90-113 (117)
128 PRK04056 Maf-like protein; Rev 26.2 1.7E+02 0.0036 18.4 3.9 29 55-83 64-93 (180)
129 PRK07631 amidophosphoribosyltr 26.1 72 0.0016 23.3 2.5 30 56-85 346-375 (475)
130 PRK14361 Maf-like protein; Pro 26.0 1.6E+02 0.0034 18.7 3.8 29 55-83 61-90 (187)
131 PRK06031 phosphoribosyltransfe 25.8 94 0.002 20.4 2.9 31 55-85 151-181 (233)
132 PRK04694 Maf-like protein; Rev 25.7 1.6E+02 0.0034 18.6 3.8 29 55-83 67-96 (190)
133 PRK00648 Maf-like protein; Rev 25.6 1.6E+02 0.0036 18.6 3.8 29 55-83 68-97 (191)
134 PRK14363 Maf-like protein; Pro 25.5 1.7E+02 0.0038 18.8 4.0 29 55-83 64-93 (204)
135 PF03793 PASTA: PASTA domain; 25.3 63 0.0014 15.9 1.7 18 68-85 5-22 (63)
136 PRK14365 Maf-like protein; Pro 25.3 1.6E+02 0.0036 18.7 3.8 28 56-83 67-95 (197)
137 PRK01441 Maf-like protein; Rev 25.1 1.8E+02 0.0038 18.7 4.0 29 55-83 75-104 (207)
138 PRK08558 adenine phosphoribosy 25.1 1.1E+02 0.0024 20.0 3.1 31 55-85 173-203 (238)
139 PRK04425 Maf-like protein; Rev 25.0 1.6E+02 0.0036 18.7 3.8 28 56-83 69-97 (196)
140 COG2144 Selenophosphate synthe 24.6 1.6E+02 0.0036 20.4 3.8 43 21-64 122-169 (324)
141 PRK02141 Maf-like protein; Rev 24.5 1.7E+02 0.0037 18.9 3.8 27 57-83 77-104 (207)
142 PRK13811 orotate phosphoribosy 24.4 98 0.0021 19.0 2.6 30 56-85 102-131 (170)
143 PRK14362 Maf-like protein; Pro 24.0 1.9E+02 0.0042 18.6 4.0 28 56-83 77-105 (207)
144 PRK14366 Maf-like protein; Pro 24.0 1.8E+02 0.0039 18.5 3.8 28 56-83 70-98 (195)
145 PF07293 DUF1450: Protein of u 24.0 1.3E+02 0.0029 16.3 3.0 29 55-83 42-70 (78)
146 PRK01526 Maf-like protein; Rev 23.8 1.8E+02 0.0039 18.7 3.8 28 56-83 74-102 (205)
147 TIGR01367 pyrE_Therm orotate p 23.8 1.1E+02 0.0023 19.2 2.8 31 55-85 102-132 (187)
148 PRK00884 Maf-like protein; Rev 23.7 1.8E+02 0.004 18.5 3.8 29 55-83 65-94 (194)
149 PRK08341 amidophosphoribosyltr 23.6 93 0.002 22.5 2.7 29 57-85 333-361 (442)
150 PRK00455 pyrE orotate phosphor 23.4 1.3E+02 0.0029 18.8 3.2 31 55-85 110-140 (202)
151 COG0424 Maf Nucleotide-binding 23.3 2.1E+02 0.0046 18.3 4.0 29 56-84 68-97 (193)
152 PF14453 ThiS-like: ThiS-like 23.2 89 0.0019 15.9 1.9 22 43-64 33-54 (57)
153 TIGR00739 yajC preprotein tran 22.9 74 0.0016 17.4 1.7 17 51-67 34-50 (84)
154 PRK07349 amidophosphoribosyltr 22.5 1.2E+02 0.0026 22.4 3.1 29 57-85 376-404 (500)
155 cd03701 IF2_IF5B_II IF2_IF5B_I 22.5 44 0.00095 18.6 0.7 12 52-63 24-35 (95)
156 PF01331 mRNA_cap_enzyme: mRNA 22.3 1.7E+02 0.0036 18.1 3.4 42 38-83 75-116 (192)
157 PRK00234 Maf-like protein; Rev 22.3 2.2E+02 0.0047 18.0 4.0 29 55-83 65-94 (192)
158 PRK05585 yajC preprotein trans 22.0 72 0.0016 18.3 1.6 18 50-67 48-65 (106)
159 COG4273 Uncharacterized conser 21.9 96 0.0021 18.7 2.1 30 39-69 49-78 (135)
160 PF02643 DUF192: Uncharacteriz 21.3 95 0.0021 17.6 2.0 23 38-62 83-105 (108)
161 PRK09246 amidophosphoribosyltr 20.9 1.2E+02 0.0026 22.3 2.8 29 57-85 357-385 (501)
162 PF08541 ACP_syn_III_C: 3-Oxoa 20.5 1E+02 0.0022 16.4 1.9 16 49-64 60-75 (90)
163 KOG3686|consensus 20.5 1.9E+02 0.0041 22.6 3.8 64 10-84 594-657 (740)
164 cd03703 aeIF5B_II aeIF5B_II: T 20.1 64 0.0014 18.8 1.1 12 52-63 24-35 (110)
No 1
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.73 E-value=1e-16 Score=88.08 Aligned_cols=73 Identities=25% Similarity=0.422 Sum_probs=62.7
Q ss_pred EEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH 86 (88)
Q Consensus 12 ~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~ 86 (88)
+++.+....+|||.+..+.. ....++||..+.++++|+++| |++||+|++|||.++.++++++++.+++.+..
T Consensus 2 v~l~k~~~~~lG~~l~~~~~-~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~ 74 (81)
T PF00595_consen 2 VTLEKSGNGPLGFTLRGGSD-NDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASN 74 (81)
T ss_dssp EEEEESTTSBSSEEEEEEST-SSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTS
T ss_pred EEEEeCCCCCcCEEEEecCC-CCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCC
Confidence 56777767799999974333 223569999999999999999 99999999999999999999999999998763
No 2
>KOG3550|consensus
Probab=99.64 E-value=9.2e-16 Score=92.77 Aligned_cols=73 Identities=33% Similarity=0.507 Sum_probs=62.1
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+.+.+ ..+||||.+. ||++ +..+|||++++||+.|++-|.|+.||++++|||.++++-.|+.++++||.+.
T Consensus 92 rvvelpk-tdeglgfnvm-ggke-qnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~ 164 (207)
T KOG3550|consen 92 RVVELPK-TDEGLGFNVM-GGKE-QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAV 164 (207)
T ss_pred ceeecCc-cccccceeec-cCcc-cCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhc
Confidence 4455553 3469999998 5554 4455999999999999999999999999999999999999999999999765
No 3
>KOG3605|consensus
Probab=99.54 E-value=7.5e-15 Score=104.33 Aligned_cols=85 Identities=64% Similarity=0.953 Sum_probs=80.4
Q ss_pred CcCCCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy3490 2 LHLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI 81 (88)
Q Consensus 2 ~~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~l 81 (88)
.|.+++.+|++.++|.+|+.||+.|+.+|+++-.+.++|..+..++||+++|.|..||+|++|||.++.+++++-++..+
T Consensus 639 ~FakkE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~I 718 (829)
T KOG3605|consen 639 HFAKKENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSII 718 (829)
T ss_pred HhhhhcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCC
Q psy3490 82 KVNHH 86 (88)
Q Consensus 82 k~~~~ 86 (88)
|+.++
T Consensus 719 k~~Kn 723 (829)
T KOG3605|consen 719 KGLKN 723 (829)
T ss_pred hcccc
Confidence 98764
No 4
>KOG3209|consensus
Probab=99.53 E-value=4.2e-14 Score=101.52 Aligned_cols=74 Identities=32% Similarity=0.453 Sum_probs=64.1
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.-+|.+.++.++||||.|..+.. .+.. -|.++++||||++.|+|++||+|++|||.++.+++|.+++++||.++
T Consensus 754 ~yDV~lhR~ENeGFGFVi~sS~~-kp~s--giGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaG 827 (984)
T KOG3209|consen 754 PYDVVLHRKENEGFGFVIMSSQN-KPES--GIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAG 827 (984)
T ss_pred CeeeEEecccCCceeEEEEeccc-CCCC--CccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcC
Confidence 35678999888899999984333 2333 38999999999999999999999999999999999999999999875
No 5
>KOG3209|consensus
Probab=99.49 E-value=9.5e-14 Score=99.73 Aligned_cols=71 Identities=30% Similarity=0.424 Sum_probs=60.7
Q ss_pred EEEEECCCCC-cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 11 IVVVPKAKGE-ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 11 ~~~i~~~~~~-~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.|+++ .|. ||||+|+ ||. .....+||.++.+++||.++|++++||+|++|||.+..+++|+.|+++||+-+
T Consensus 901 ~VelE--rG~kGFGFSiR-GGr-eynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg 972 (984)
T KOG3209|consen 901 TVELE--RGAKGFGFSIR-GGR-EYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGG 972 (984)
T ss_pred EEEee--ccccccceEee-ccc-ccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCC
Confidence 34444 455 9999998 443 44456999999999999999999999999999999999999999999998654
No 6
>KOG3551|consensus
Probab=99.49 E-value=4.3e-14 Score=95.89 Aligned_cols=75 Identities=28% Similarity=0.367 Sum_probs=68.6
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH 86 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~ 86 (88)
+.+.+.|.+.+|||++|. ||.++..| |.|+++++|-+|++.+.|..||.|++|||.++.+.+|+|+++.||.++.
T Consensus 86 R~V~V~K~d~gGLGISIK-GGreNkMP-IlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGk 160 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIK-GGRENKMP-ILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGK 160 (506)
T ss_pred ceeEEEEecCCcceEEee-cCcccCCc-eehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCc
Confidence 678888888899999998 66667666 9999999999999999999999999999999999999999999998763
No 7
>KOG3549|consensus
Probab=99.45 E-value=2.5e-13 Score=91.48 Aligned_cols=75 Identities=28% Similarity=0.353 Sum_probs=67.4
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH 86 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~ 86 (88)
+.++|.+.+-+|||++|. ||. +..-++.|++++....|+..|.|.+||-|++|||..+++++|+|++.+||+++.
T Consensus 56 RtVtirRQ~vGGlGLSIK-GGa-EHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGd 130 (505)
T KOG3549|consen 56 RTVTIRRQKVGGLGLSIK-GGA-EHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGD 130 (505)
T ss_pred eeEEEEeeecCcceeeec-ccc-ccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCC
Confidence 778999988889999997 443 344459999999999999999999999999999999999999999999999874
No 8
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.42 E-value=8.4e-12 Score=68.06 Aligned_cols=73 Identities=32% Similarity=0.485 Sum_probs=60.1
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+.+.+....+|||.+.+ .. ....+++|..+.++++|++++ |++||.|++|||.++..++++++...++...
T Consensus 2 ~~~~l~~~~~~~~G~~~~~-~~-~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~ 74 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRG-GK-DSGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSG 74 (82)
T ss_pred EEEEEEeCCCCCcCEEEeC-cc-cCCCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCC
Confidence 4566776656799999963 22 113469999999999999976 9999999999999999999999999998754
No 9
>KOG3553|consensus
Probab=99.37 E-value=8.8e-13 Score=74.72 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=53.2
Q ss_pred cccEEEEeCCCCC---------CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 21 ILGVVIVESGWGS---------MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 21 ~lG~~i~~~~~~~---------~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
-+||.|- ||.++ .+.++||.+|.+||||+.+| |+.+|.|++|||-++.-++|++++..+++.+
T Consensus 36 ~~GFkIG-GGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~~ 107 (124)
T KOG3553|consen 36 ILGFKIG-GGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKEE 107 (124)
T ss_pred EEEEEec-cccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHhH
Confidence 5799995 23221 12389999999999999999 9999999999999999999999999998754
No 10
>KOG3651|consensus
Probab=99.34 E-value=8.1e-12 Score=82.95 Aligned_cols=74 Identities=30% Similarity=0.479 Sum_probs=66.4
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..+++.++..+-+|++| ||....-|++||.+++.++||+++|+++.||.|+.|||.++.+.+-.+++.++..+.
T Consensus 6 ~~v~ltKD~~nliGISI--GGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~ 79 (429)
T KOG3651|consen 6 ETVELTKDEKNLIGISI--GGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSL 79 (429)
T ss_pred CcEEEeeccccceeEEe--cCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhc
Confidence 45778888888999999 666566788999999999999999999999999999999999999999999998654
No 11
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.33 E-value=2.8e-11 Score=64.30 Aligned_cols=60 Identities=33% Similarity=0.457 Sum_probs=51.6
Q ss_pred cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
++||.+.+... .+++|..+.+++||+.++ |++||.|++|||.++.+.+++++..+++...
T Consensus 2 ~~G~~~~~~~~----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~ 61 (70)
T cd00136 2 GLGFSIRGGTE----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEV 61 (70)
T ss_pred CccEEEecCCC----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCC
Confidence 68999852221 358999999999999877 9999999999999999999999999998753
No 12
>KOG3606|consensus
Probab=99.33 E-value=4.2e-12 Score=83.07 Aligned_cols=84 Identities=29% Similarity=0.460 Sum_probs=71.2
Q ss_pred cCCCcccEEEEEECCCCC-cccEEEEeCCC-------CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCH
Q psy3490 3 HLNPVTSEIVVVPKAKGE-ILGVVIVESGW-------GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL 74 (88)
Q Consensus 3 ~~~~~~~~~~~i~~~~~~-~lG~~i~~~~~-------~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~ 74 (88)
.+-|++.+.+.+.+...+ +|||.|++|.. -+..++|||+++.||+.|+..|.|-+.|.+++|||+.+.+.++
T Consensus 153 DivPEtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTL 232 (358)
T KOG3606|consen 153 DIVPETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTL 232 (358)
T ss_pred cccchhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccH
Confidence 356888888888887766 99999986543 2246689999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q psy3490 75 STCQTYIKVNHH 86 (88)
Q Consensus 75 ~~~~~~lk~~~~ 86 (88)
+|+-.|+-.+.|
T Consensus 233 DQVTDMMvANsh 244 (358)
T KOG3606|consen 233 DQVTDMMVANSH 244 (358)
T ss_pred HHHHHHHhhccc
Confidence 999999865443
No 13
>KOG3571|consensus
Probab=99.31 E-value=5.3e-12 Score=88.07 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=62.5
Q ss_pred EEEEEC--CCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 11 IVVVPK--AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 11 ~~~i~~--~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
++++.+ ..-+.||++|++......+.+|||..+.++++-+.+|++.+||+|++||.+++++++-+||+..||++-
T Consensus 250 IITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV 326 (626)
T KOG3571|consen 250 IITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAV 326 (626)
T ss_pred EEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHh
Confidence 344444 333479999984344446778999999999999999999999999999999999999999999999753
No 14
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.26 E-value=2.8e-10 Score=62.08 Aligned_cols=72 Identities=31% Similarity=0.440 Sum_probs=58.2
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..+.+.+.. ..|||.+.... ....+++|..+.++++|+++| |++||.|++||+.++.++++.+...+++.++
T Consensus 3 ~~~~~~~~~-~~~G~~~~~~~--~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~ 74 (85)
T smart00228 3 RLVELEKGG-GGLGFSLVGGK--DEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAG 74 (85)
T ss_pred EEEEEEECC-CcccEEEECCC--CCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 345566555 79999996222 211569999999999999999 9999999999999999999999998887653
No 15
>KOG1892|consensus
Probab=99.25 E-value=2.7e-11 Score=89.70 Aligned_cols=77 Identities=29% Similarity=0.480 Sum_probs=63.8
Q ss_pred EEEEEECCCCCcccEEEEeC-CCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490 10 EIVVVPKAKGEILGVVIVES-GWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH 86 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~-~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~ 86 (88)
...++.+.+.+|+|++|+.. |.+...-||||++|.+|++|+.+|+|..||++++|||+++-+++.+.|+.++..++.
T Consensus 933 ei~~vtL~KnnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~ 1010 (1629)
T KOG1892|consen 933 EIITVTLKKNNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGN 1010 (1629)
T ss_pred ceEEEEEeccCCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCC
Confidence 34555666668999999732 223334489999999999999999999999999999999999999999999987765
No 16
>KOG3580|consensus
Probab=99.08 E-value=4.1e-10 Score=80.56 Aligned_cols=81 Identities=22% Similarity=0.324 Sum_probs=67.0
Q ss_pred cCCCcccEEEEEECCCCCcccEEEEeCCCCCC-----CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHH
Q psy3490 3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSM-----LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 77 (88)
Q Consensus 3 ~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~-----~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~ 77 (88)
...-+..-++++.+..+.|||+.|. ||.+++ ...++|+.|.+|+||+ |+|+.+|+|+.|||++.++..|.-|
T Consensus 3 E~~IWEQhTvTL~kdp~rGFGIAiS-GGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFA 79 (1027)
T KOG3580|consen 3 EELIWEQHTVTLQKDPKRGFGIAIS-GGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFA 79 (1027)
T ss_pred hhhhhhhheeeeecCCCCcceeEee-cCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHH
Confidence 3444555678888887779999997 444333 3479999999999997 7899999999999999999999999
Q ss_pred HHHHHhCCC
Q psy3490 78 QTYIKVNHH 86 (88)
Q Consensus 78 ~~~lk~~~~ 86 (88)
++.||.++-
T Consensus 80 vQqLrksgK 88 (1027)
T KOG3580|consen 80 VQQLRKSGK 88 (1027)
T ss_pred HHHHHhhcc
Confidence 999998764
No 17
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.99 E-value=5.7e-09 Score=57.24 Aligned_cols=57 Identities=26% Similarity=0.461 Sum_probs=48.0
Q ss_pred cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
++|+.+... ..+++|..+.+++||++.| |++||.|++|||.++.+.++.++...++.
T Consensus 3 ~lG~~~~~~-----~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~ 59 (85)
T cd00988 3 GIGLELKYD-----DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRG 59 (85)
T ss_pred EEEEEEEEc-----CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcC
Confidence 577777521 1358999999999999987 99999999999999999888898888864
No 18
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.96 E-value=6.5e-09 Score=57.02 Aligned_cols=56 Identities=29% Similarity=0.414 Sum_probs=42.9
Q ss_pred cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
.+|+.+.... ...+++|..+.++|||+++| |++||.|++|||.++. +..+....+.
T Consensus 2 ~lGv~~~~~~---~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~ 57 (82)
T PF13180_consen 2 GLGVTVQNLS---DTGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILS 57 (82)
T ss_dssp E-SEEEEECS---CSSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHH
T ss_pred EECeEEEEcc---CCCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHH
Confidence 5788875211 13469999999999999999 9999999999999995 5667666664
No 19
>KOG3542|consensus
Probab=98.93 E-value=1.7e-09 Score=78.49 Aligned_cols=75 Identities=29% Similarity=0.442 Sum_probs=64.2
Q ss_pred EEEEEEC-CCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Q psy3490 10 EIVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHL 87 (88)
Q Consensus 10 ~~~~i~~-~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~~ 87 (88)
+.+.+.+ +...++-|+++ ||.+. .-++||..|.||+.|++.| ++.||+|++|||++.++++...|.++|+++.||
T Consensus 537 RqviLtk~sre~pl~f~L~-GGsEk-GfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnnthL 612 (1283)
T KOG3542|consen 537 RQVILTKASREDPLMFRLV-GGSEK-GFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNNTHL 612 (1283)
T ss_pred eeEEEecccccCCceeEec-cCccc-cceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCCceE
Confidence 5677777 33449999998 44433 3359999999999999999 999999999999999999999999999999887
No 20
>KOG3938|consensus
Probab=98.85 E-value=4.3e-09 Score=68.90 Aligned_cols=71 Identities=28% Similarity=0.389 Sum_probs=60.7
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+++.+.++ ...||++|.+.|.+. .||+++.++|.-++-..+++||.|-+|||+++.++.|.|++.+||+-.
T Consensus 128 kEv~v~Ks-edalGlTITDNG~Gy----AFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~ 198 (334)
T KOG3938|consen 128 KEVEVVKS-EDALGLTITDNGAGY----AFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELP 198 (334)
T ss_pred eeEEEEec-ccccceEEeeCCcce----eeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcc
Confidence 66766653 359999997555544 799999999999998889999999999999999999999999999643
No 21
>KOG0609|consensus
Probab=98.84 E-value=1.2e-08 Score=71.82 Aligned_cols=73 Identities=33% Similarity=0.471 Sum_probs=64.1
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.+.+.+.++.+.++|.++. ..... .++|.++..|+.+++.|.|++||.|.+|||+++.+....+++.+++.+.
T Consensus 123 vriv~i~k~~~eplG~Tik---~~e~~-~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~ 195 (542)
T KOG0609|consen 123 VRIVRIVKNTGEPLGATIR---VEEDT-KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR 195 (542)
T ss_pred eEEEEEeecCCCccceEEE---eccCC-ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC
Confidence 4778899888899999995 21222 4899999999999999999999999999999999999999999998765
No 22
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.82 E-value=1e-08 Score=71.09 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=61.7
Q ss_pred cCCCcccEEEEEECCC-CCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy3490 3 HLNPVTSEIVVVPKAK-GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI 81 (88)
Q Consensus 3 ~~~~~~~~~~~i~~~~-~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~l 81 (88)
|++|++++.+...... -.++|..+.. ... ..+.|.++.+++||+++| +++||.|+.|||.++.++..++++..+
T Consensus 82 y~~~e~~~~~~~~~~~~~~GiG~~i~~--~~~--~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~i 156 (406)
T COG0793 82 YLDPEDAAEFRTDTSGEFGGIGIELQM--EDI--GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLI 156 (406)
T ss_pred ccCHHHHHHhhhhccccccceeEEEEE--ecC--CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHh
Confidence 5667777665544332 2288888852 111 358999999999999999 999999999999999999999999999
Q ss_pred HhCC
Q psy3490 82 KVNH 85 (88)
Q Consensus 82 k~~~ 85 (88)
|+..
T Consensus 157 rG~~ 160 (406)
T COG0793 157 RGKP 160 (406)
T ss_pred CCCC
Confidence 8765
No 23
>KOG3580|consensus
Probab=98.80 E-value=1.9e-08 Score=72.24 Aligned_cols=67 Identities=25% Similarity=0.405 Sum_probs=57.2
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
|.+.+. +|...|+.++ ||.+. +|||..|.+|+||+..| |+.||+|+.||.+++.++..++|+..|-.
T Consensus 409 k~VrF~--KGdSvGLRLA-GGNDV---GIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~ 475 (1027)
T KOG3580|consen 409 KMVRFK--KGDSVGLRLA-GGNDV---GIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLE 475 (1027)
T ss_pred eeEEee--cCCeeeeEec-cCCce---eEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhc
Confidence 655554 4779999997 45443 59999999999999999 99999999999999999999999987753
No 24
>KOG3605|consensus
Probab=98.70 E-value=2.9e-08 Score=71.50 Aligned_cols=64 Identities=27% Similarity=0.448 Sum_probs=53.5
Q ss_pred EEEEECCCCC-cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 11 IVVVPKAKGE-ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 11 ~~~i~~~~~~-~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
++.|.+-+-. .|||++. + =+|.++..|+.|+|.| +++|.+|++|||+++...+|+.++++|..+
T Consensus 739 ~V~I~RPd~kyQLGFSVQ-----N----GiICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~a 803 (829)
T KOG3605|consen 739 TVLIRRPDLRYQLGFSVQ-----N----GIICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNA 803 (829)
T ss_pred EEEeecccchhhccceee-----C----cEeehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHh
Confidence 4555554433 9999994 2 1788899999999977 999999999999999999999999999764
No 25
>KOG3552|consensus
Probab=98.68 E-value=2.5e-08 Score=74.07 Aligned_cols=66 Identities=24% Similarity=0.386 Sum_probs=53.6
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
|.+.++++..-||||.- | .+++|..|.+|+|++ |+|.+||+|++|||.++++++.+.+++++|.+.
T Consensus 57 r~vq~~r~~~lGFgfva--g------rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace 122 (1298)
T KOG3552|consen 57 RQVQLQRNASLGFGFVA--G------RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACE 122 (1298)
T ss_pred hhhhhhccccccceeec--C------CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHh
Confidence 44556654444555543 2 248999999999997 789999999999999999999999999999765
No 26
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.67 E-value=2.7e-07 Score=49.79 Aligned_cols=44 Identities=30% Similarity=0.522 Sum_probs=38.2
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.+.|..+.++++|++.| |++||.|++|||.++. +.+++...++.
T Consensus 13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~--~~~~~~~~l~~ 56 (79)
T cd00989 13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIK--SWEDLVDAVQE 56 (79)
T ss_pred CcEEEeECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHH
Confidence 47899999999999988 9999999999999997 55677777654
No 27
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.65 E-value=6.5e-08 Score=70.52 Aligned_cols=78 Identities=28% Similarity=0.345 Sum_probs=55.7
Q ss_pred cCCCcccEEEEEECCC-CCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECC-----EECCCCCHHH
Q psy3490 3 HLNPVTSEIVVVPKAK-GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG-----VSLVGLPLST 76 (88)
Q Consensus 3 ~~~~~~~~~~~i~~~~-~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng-----~~~~~~~~~~ 76 (88)
|++|++.+.+...... -.|+|+.+.. . ...++|..+.|||||++++.|++||.|++||+ .++.+++.++
T Consensus 226 Y~sp~e~e~f~~~~~~~~~GIGa~l~~--~---~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~ 300 (667)
T PRK11186 226 YLSPRNAEQFNTEMNLSLEGIGAVLQM--D---DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDD 300 (667)
T ss_pred ccChHHHHHhhhccCCceeEEEEEEEE--e---CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHH
Confidence 4555555444333221 1278888741 1 12489999999999999855999999999994 3566889999
Q ss_pred HHHHHHhCC
Q psy3490 77 CQTYIKVNH 85 (88)
Q Consensus 77 ~~~~lk~~~ 85 (88)
++.+|++..
T Consensus 301 vv~lirG~~ 309 (667)
T PRK11186 301 VVALIKGPK 309 (667)
T ss_pred HHHHhcCCC
Confidence 999998654
No 28
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.61 E-value=4.7e-07 Score=62.50 Aligned_cols=62 Identities=29% Similarity=0.399 Sum_probs=49.5
Q ss_pred cccEEEEeCCC-CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 21 ILGVVIVESGW-GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 21 ~lG~~i~~~~~-~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
++|+.+..... .....++.|..+.++|||+++| |++||.|++|||.++.+.+..++..++++
T Consensus 86 GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g 148 (389)
T PLN00049 86 GVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQG 148 (389)
T ss_pred EEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence 88888742111 1112358999999999999998 99999999999999999888888888864
No 29
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.59 E-value=4.3e-07 Score=49.48 Aligned_cols=45 Identities=27% Similarity=0.377 Sum_probs=39.1
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.++.|..+.+++||+++| |++||.|++|||.++. +.++....+..
T Consensus 10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~ 54 (79)
T cd00991 10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKP 54 (79)
T ss_pred CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhc
Confidence 368999999999999988 9999999999999997 56677777654
No 30
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.55 E-value=5.5e-07 Score=48.75 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=36.4
Q ss_pred ccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCC
Q psy3490 22 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71 (88)
Q Consensus 22 lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~ 71 (88)
+|+.+. . ...++.|..+.++|+|+.+| |++||.|++|||.++.+
T Consensus 3 ~G~~~~--~---~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~ 46 (80)
T cd00990 3 LGLTLD--K---EEGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA 46 (80)
T ss_pred ccEEEE--c---cCCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH
Confidence 577663 1 12248999999999999998 99999999999999875
No 31
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.55 E-value=4.4e-07 Score=61.37 Aligned_cols=57 Identities=26% Similarity=0.411 Sum_probs=47.5
Q ss_pred cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
++|+.+.. ...+++|..+.++|||+++| |++||.|++|||.++.+.+..++...++.
T Consensus 52 ~lG~~~~~-----~~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~ 108 (334)
T TIGR00225 52 GIGIQVGM-----DDGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRG 108 (334)
T ss_pred EEEEEEEE-----ECCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccC
Confidence 78888741 11248999999999999999 99999999999999998877787777754
No 32
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.40 E-value=2.3e-06 Score=47.07 Aligned_cols=44 Identities=32% Similarity=0.536 Sum_probs=37.1
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
+++|..+.+++||+++| |++||.|++|||.++.+ ..+....++.
T Consensus 25 g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~--~~~~~~~l~~ 68 (90)
T cd00987 25 GVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKS--VADLRRALAE 68 (90)
T ss_pred EEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCC--HHHHHHHHHh
Confidence 68999999999999988 99999999999999974 4455555543
No 33
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.35 E-value=3.8e-06 Score=45.51 Aligned_cols=43 Identities=30% Similarity=0.409 Sum_probs=36.5
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
++.|..+.+++||+. + |++||.|++|||.++. +.++....++.
T Consensus 9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~ 51 (79)
T cd00986 9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQS 51 (79)
T ss_pred CEEEEEECCCCchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHh
Confidence 589999999999986 7 9999999999999997 46666666653
No 34
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=98.14 E-value=2.2e-05 Score=47.27 Aligned_cols=78 Identities=21% Similarity=0.234 Sum_probs=47.1
Q ss_pred cCCCcccEEEEEECCCC----CcccEEEEeCCCC-CCCCcEEEEEECCCChhhhhCCCCC-CCEEEEECCEECCCCCHHH
Q psy3490 3 HLNPVTSEIVVVPKAKG----EILGVVIVESGWG-SMLPTVVIANLAPAGAAARCGQLNI-GDQIIAVNGVSLVGLPLST 76 (88)
Q Consensus 3 ~~~~~~~~~~~i~~~~~----~~lG~~i~~~~~~-~~~~~i~I~~v~~g~~a~~~g~l~~-gd~i~~Vng~~~~~~~~~~ 76 (88)
..+....|++.+..++. ..+|+++.-.... ....++-|.+|.|+|||+.+| |.+ .|.|+.+++..+.+ .++
T Consensus 5 ~~k~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~--~~~ 81 (138)
T PF04495_consen 5 NAKGQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDD--EDD 81 (138)
T ss_dssp ETTTSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--S--TCH
T ss_pred ECCCCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCC--HHH
Confidence 34556667777765332 3778888522222 234468899999999999999 887 69999999988874 345
Q ss_pred HHHHHHh
Q psy3490 77 CQTYIKV 83 (88)
Q Consensus 77 ~~~~lk~ 83 (88)
..+.+..
T Consensus 82 l~~~v~~ 88 (138)
T PF04495_consen 82 LFELVEA 88 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 35
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.04 E-value=2.3e-05 Score=54.69 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=40.0
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.+++|..+.++|+|+++| |++||.|++|||+++. +.++..++++.
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~--s~~d~~~~l~~ 406 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVS--SVAELRKVLDR 406 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHh
Confidence 469999999999999998 9999999999999997 56777777764
No 36
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.03 E-value=2.5e-05 Score=54.53 Aligned_cols=44 Identities=27% Similarity=0.466 Sum_probs=39.1
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
++.|..+.++|||+++| |++||.|++|||+++. +.++....++.
T Consensus 204 g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~--s~~dl~~~l~~ 247 (420)
T TIGR00054 204 EPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLR--SWTDFVSAVKE 247 (420)
T ss_pred CcEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHh
Confidence 57899999999999998 9999999999999997 56787777765
No 37
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.01 E-value=4.8e-05 Score=50.13 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=42.4
Q ss_pred cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.+|++... .+....|+.|..+.++++|++.| |+.||.|++|||.++.+ .+++.+++.+
T Consensus 178 ~lgi~p~~--~~g~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~--~~~~~~~l~~ 235 (259)
T TIGR01713 178 YIRLSPVM--KNDKLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRD--PEQAFQALQM 235 (259)
T ss_pred eEeEEEEE--eCCceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHh
Confidence 45555531 11223479999999999999999 99999999999999974 4455554443
No 38
>PRK10139 serine endoprotease; Provisional
Probab=98.01 E-value=2.9e-05 Score=54.72 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=39.2
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
+++|..+.+++||+++| |++||.|++|||+++. +.++....+++
T Consensus 391 Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~--~~~~~~~~l~~ 434 (455)
T PRK10139 391 GIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAA 434 (455)
T ss_pred ceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHh
Confidence 68999999999999998 9999999999999996 56777777765
No 39
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.00 E-value=2.5e-05 Score=54.49 Aligned_cols=44 Identities=27% Similarity=0.514 Sum_probs=37.6
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
.+++|..+.++|||+++| |++||.|++|||.++. +..+....+.
T Consensus 257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~--~~~~~~~~l~ 300 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPIS--SFADLRRAIG 300 (428)
T ss_pred CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHH
Confidence 468999999999999998 9999999999999997 4555555554
No 40
>PRK10139 serine endoprotease; Provisional
Probab=97.98 E-value=3.6e-05 Score=54.28 Aligned_cols=45 Identities=22% Similarity=0.449 Sum_probs=39.0
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.+++|..+.++|||+++| |++||.|++|||.++. +..+....+..
T Consensus 290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~ 334 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIAT 334 (455)
T ss_pred CceEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHh
Confidence 378999999999999998 9999999999999997 56777666653
No 41
>PRK10942 serine endoprotease; Provisional
Probab=97.92 E-value=4.9e-05 Score=53.84 Aligned_cols=46 Identities=28% Similarity=0.439 Sum_probs=40.3
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+++|..+.++|+|++.| |++||.|++||++++. +.++..+.+++.
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~--s~~dl~~~l~~~ 453 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVK--NIAELRKILDSK 453 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhC
Confidence 368999999999999998 9999999999999997 567777777653
No 42
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.92 E-value=4.2e-05 Score=52.26 Aligned_cols=45 Identities=27% Similarity=0.441 Sum_probs=38.2
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.+++|..+.+++||+++| |++||.|++|||+++. +..+....++.
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~dl~~~l~~ 322 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVI--GAEELMDRIAE 322 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHh
Confidence 368999999999999988 9999999999999997 45566665543
No 43
>PRK10898 serine endoprotease; Provisional
Probab=97.90 E-value=6.4e-05 Score=51.46 Aligned_cols=44 Identities=25% Similarity=0.490 Sum_probs=36.7
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
.+++|..+.+++||+++| |+.||.|++|||+++.+ ..+....+.
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~~l~~~l~ 322 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAIS--ALETMDQVA 322 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHH
Confidence 479999999999999988 99999999999999964 444444443
No 44
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.90 E-value=5.7e-05 Score=53.12 Aligned_cols=44 Identities=34% Similarity=0.576 Sum_probs=38.3
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
+..|..|.++|||+++| |++||.|++|||.++. +.++....++.
T Consensus 222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~ 265 (449)
T PRK10779 222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRD 265 (449)
T ss_pred CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHh
Confidence 36899999999999998 9999999999999996 66777777654
No 45
>PRK10942 serine endoprotease; Provisional
Probab=97.88 E-value=6.8e-05 Score=53.16 Aligned_cols=44 Identities=20% Similarity=0.470 Sum_probs=37.6
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
.+++|..+.++|||+++| |+.||.|++|||..+. +.++....+.
T Consensus 311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~ 354 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS--SFAALRAQVG 354 (473)
T ss_pred CceEEEEECCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHH
Confidence 478999999999999998 9999999999999997 4556555554
No 46
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.69 E-value=9.9e-05 Score=51.92 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=31.1
Q ss_pred EEEEEECCCChhhhhCCCCCCCEEEEECCEECCCC
Q psy3490 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72 (88)
Q Consensus 38 i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~ 72 (88)
..|..+.++|||+++| +++||.|++|||+++.+.
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~ 161 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDW 161 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCH
Confidence 3689999999999999 999999999999999754
No 47
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.62 E-value=6.5e-05 Score=52.65 Aligned_cols=38 Identities=29% Similarity=0.480 Sum_probs=31.3
Q ss_pred EEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490 40 IANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY 80 (88)
Q Consensus 40 I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~ 80 (88)
|..|.|+|+|+++| |++||+|++|||+.+. +..+....
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~--Dw~D~~~~ 39 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPR--DLIDYQFL 39 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHH
Confidence 56789999999998 9999999999999996 44454433
No 48
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.52 E-value=0.00028 Score=49.36 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=34.9
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY 80 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~ 80 (88)
.+..|..+.++|||+++| +++||.|++|||.++.+. .+....
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~--~dl~~~ 169 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGF--KDVRQQ 169 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHH
Confidence 457899999999999998 999999999999998743 444433
No 49
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.44 E-value=0.0014 Score=45.77 Aligned_cols=36 Identities=22% Similarity=0.477 Sum_probs=30.4
Q ss_pred CChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 46 AGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 46 g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
++||+.+| |++||.|++|||.++. +.+++.+.++..
T Consensus 123 ~SPAa~AG-Lq~GDiIvsING~~V~--s~~DL~~iL~~~ 158 (402)
T TIGR02860 123 HSPGEEAG-IQIGDRILKINGEKIK--NMDDLANLINKA 158 (402)
T ss_pred CCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhC
Confidence 58999888 9999999999999997 567777777654
No 50
>KOG0606|consensus
Probab=97.38 E-value=0.00064 Score=52.19 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=52.5
Q ss_pred EEEECCCCCcccEEEEeCCCCCCCCc-----EEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 12 VVVPKAKGEILGVVIVESGWGSMLPT-----VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 12 ~~i~~~~~~~lG~~i~~~~~~~~~~~-----i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
++|.. .+.+|||++..=....+..- -.+-.|.+++||...+ ++.+|.|..|||+++.++.|.|+++++-+.+
T Consensus 630 I~i~~-~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~g 706 (1205)
T KOG0606|consen 630 ITIHF-SGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSG 706 (1205)
T ss_pred eeeec-cccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcC
Confidence 44553 45588887641011111111 2577899999999988 9999999999999999999999999987443
No 51
>KOG1738|consensus
Probab=97.30 E-value=0.00045 Score=50.16 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=54.0
Q ss_pred CCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 17 AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 17 ~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..+.++|+.|. +. .+...+|+.+.+++||+....|..||.+++||+..+.+..+.-++..++.+.
T Consensus 210 kp~eglg~~I~-Ss---ydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~ 274 (638)
T KOG1738|consen 210 SPSEGLGLYID-SS---YDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETP 274 (638)
T ss_pred CcccCCceEEe-ee---cCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCc
Confidence 34558999985 22 2223689999999999999999999999999999999999999998887654
No 52
>KOG3129|consensus
Probab=97.19 E-value=0.0014 Score=42.00 Aligned_cols=45 Identities=22% Similarity=0.427 Sum_probs=34.8
Q ss_pred EEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Q psy3490 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP-LSTCQTYIKV 83 (88)
Q Consensus 38 i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~-~~~~~~~lk~ 83 (88)
++|..|.|+|||+++| |+.||.|+.+....-.+.. +..+....++
T Consensus 141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~ 186 (231)
T KOG3129|consen 141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQS 186 (231)
T ss_pred EEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHh
Confidence 6899999999999998 9999999998777655553 4444444443
No 53
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.08 E-value=0.0025 Score=45.72 Aligned_cols=41 Identities=34% Similarity=0.546 Sum_probs=34.3
Q ss_pred cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCE
Q psy3490 21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67 (88)
Q Consensus 21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~ 67 (88)
.||+.+. . ......|..|.++|||+++| |.+||.|+.|||.
T Consensus 452 ~LGl~v~--~---~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 452 YLGLKVK--S---EGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred ccceEec--c---cCCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 7788773 1 12236899999999999999 9999999999999
No 54
>KOG3532|consensus
Probab=97.08 E-value=0.0031 Score=46.82 Aligned_cols=62 Identities=15% Similarity=0.288 Sum_probs=48.1
Q ss_pred CCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 16 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 16 ~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
...+.++|+.... +..+.+-|..|.++++|.++. +.+||.+++|||.++. +-.++...++..
T Consensus 382 ~~~s~~ig~vf~~----~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~ 443 (1051)
T KOG3532|consen 382 YDVSSPIGLVFDK----NTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQST 443 (1051)
T ss_pred ccccCceeEEEec----CCceEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhc
Confidence 3344477777642 334458899999999999987 9999999999999996 677777777643
No 55
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0096 Score=40.50 Aligned_cols=44 Identities=32% Similarity=0.496 Sum_probs=35.9
Q ss_pred CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy3490 35 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI 81 (88)
Q Consensus 35 ~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~l 81 (88)
..+++|..+.+++||++.| ++.||.|+++||.++.+ ..+....+
T Consensus 269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~--~~~l~~~v 312 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVAS--LSDLVAAV 312 (347)
T ss_pred CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccC--HHHHHHHH
Confidence 3458999999999999998 99999999999999974 34444333
No 56
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=96.39 E-value=0.012 Score=40.02 Aligned_cols=44 Identities=25% Similarity=0.416 Sum_probs=38.4
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
++|+..+..++++. +.|+.||.|.+|||+++. +.+|....+++.
T Consensus 131 gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~ 174 (342)
T COG3480 131 GVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFT--SSDELIDYVSSK 174 (342)
T ss_pred eEEEEEccCCcchh--ceeccCCeEEeeCCeecC--CHHHHHHHHhcc
Confidence 68999999999985 679999999999999997 778888887654
No 57
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=95.69 E-value=0.039 Score=30.82 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=21.4
Q ss_pred cEEEEEECCC--------ChhhhhC-CCCCCCEEEEECCEECCC
Q psy3490 37 TVVIANLAPA--------GAAARCG-QLNIGDQIIAVNGVSLVG 71 (88)
Q Consensus 37 ~i~I~~v~~g--------~~a~~~g-~l~~gd~i~~Vng~~~~~ 71 (88)
++.|.++++| ||..+-| .+++||.|++|||+++..
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~ 56 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTA 56 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BT
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCC
Confidence 4678888887 4544433 366999999999999964
No 58
>KOG1320|consensus
Probab=95.63 E-value=0.016 Score=41.36 Aligned_cols=45 Identities=27% Similarity=0.441 Sum_probs=36.9
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+++..|.+++++...+ +..||+|..|||.++.++ .+...+++.+
T Consensus 399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~ 443 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEEC 443 (473)
T ss_pred EEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhc
Confidence 58899999999999876 999999999999999865 3445555443
No 59
>PF12812 PDZ_1: PDZ-like domain
Probab=95.54 E-value=0.1 Score=28.44 Aligned_cols=46 Identities=22% Similarity=0.156 Sum_probs=36.6
Q ss_pred EEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH 86 (88)
Q Consensus 38 i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~ 86 (88)
.++.....++++...+ +..|-.|.+||++++. ++++-++.+|+.++
T Consensus 32 gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTP--DLDDFIKVVKKIPD 77 (78)
T ss_pred EEEEEecCCChhhhCC-CCCCeEEEeECCcCCc--CHHHHHHHHHhCCC
Confidence 4555678888887655 9999999999999997 67777788877654
No 60
>KOG4407|consensus
Probab=95.18 E-value=0.011 Score=46.78 Aligned_cols=48 Identities=29% Similarity=0.481 Sum_probs=44.9
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.+||..|.+.++|..+. |+-||+++.||..++.++...+++.+++++.
T Consensus 144 T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~ 191 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTP 191 (1973)
T ss_pred hhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCC
Confidence 47999999999999987 9999999999999999999999999998765
No 61
>KOG4371|consensus
Probab=94.63 E-value=0.069 Score=41.54 Aligned_cols=68 Identities=26% Similarity=0.420 Sum_probs=54.4
Q ss_pred EEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 12 ~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
+.+.++...++|++.. ......++|+..+...+.|...|++++||++...+|.++.+.+..+..+.++
T Consensus 1249 ~~~~~~p~~~~~~~~~---~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~ 1316 (1332)
T KOG4371|consen 1249 VMLLKKPMATLGLSLA---KRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLK 1316 (1332)
T ss_pred heeeeccccccccccc---ccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhh
Confidence 4455556668888873 3355667999999999999999999999999999999999988777666554
No 62
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=94.21 E-value=0.11 Score=34.89 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=29.3
Q ss_pred EEEECCCChh--hhhCCCCCCCEEEEECCEECCCCCH-HHHHHHHHhCC
Q psy3490 40 IANLAPAGAA--ARCGQLNIGDQIIAVNGVSLVGLPL-STCQTYIKVNH 85 (88)
Q Consensus 40 I~~v~~g~~a--~~~g~l~~gd~i~~Vng~~~~~~~~-~~~~~~lk~~~ 85 (88)
=-++.||..+ ...-.|+.||.+.+|||.++.+... .++.+.|++..
T Consensus 208 GYrl~Pgkd~~lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~t 256 (276)
T PRK09681 208 GYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMD 256 (276)
T ss_pred EEEECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCC
Confidence 3446666533 3333499999999999999986533 23444555443
No 63
>KOG1421|consensus
Probab=91.08 E-value=0.51 Score=35.68 Aligned_cols=33 Identities=33% Similarity=0.625 Sum_probs=28.7
Q ss_pred EEEEEECCCChhhhhCCCCCCCEEEEECCEECCCC
Q psy3490 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72 (88)
Q Consensus 38 i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~ 72 (88)
+.+..+.++|||++ .|.+||.+++||++.+.++
T Consensus 305 LvV~~vL~~gpa~k--~Le~GDillavN~t~l~df 337 (955)
T KOG1421|consen 305 LVVETVLPEGPAEK--KLEPGDILLAVNSTCLNDF 337 (955)
T ss_pred EEEEEeccCCchhh--ccCCCcEEEEEcceehHHH
Confidence 68899999999997 4999999999998877543
No 64
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=89.25 E-value=2.1 Score=29.26 Aligned_cols=33 Identities=42% Similarity=0.685 Sum_probs=28.8
Q ss_pred EEEEECCCChhhhhCCCCCCCEEEEECCEECCCC
Q psy3490 39 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72 (88)
Q Consensus 39 ~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~ 72 (88)
.+..+...++|..++ ++.||.+.++|+..+...
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~ 164 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASW 164 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccCH
Confidence 444789999999998 999999999999999744
No 65
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=87.93 E-value=2 Score=28.58 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=20.3
Q ss_pred CCCChhhhhCCCCCCCEEEEECCEECC
Q psy3490 44 APAGAAARCGQLNIGDQIIAVNGVSLV 70 (88)
Q Consensus 44 ~~g~~a~~~g~l~~gd~i~~Vng~~~~ 70 (88)
.+++.=+..| |+.||..+++|+.+++
T Consensus 215 kd~slF~~sg-lq~GDIavaiNnldlt 240 (275)
T COG3031 215 KDGSLFYKSG-LQRGDIAVAINNLDLT 240 (275)
T ss_pred CCcchhhhhc-CCCcceEEEecCcccC
Confidence 3344455566 9999999999999886
No 66
>KOG4407|consensus
Probab=87.39 E-value=1.2 Score=36.10 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=50.7
Q ss_pred EEEEEECCCCCcccEEEEe---------------CCCC--------CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECC
Q psy3490 10 EIVVVPKAKGEILGVVIVE---------------SGWG--------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~---------------~~~~--------~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng 66 (88)
+.+++.++...||||.++- .|.. ...-.+++..+..+.++..+| +..+|.|..|||
T Consensus 47 ~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~~itG 125 (1973)
T KOG4407|consen 47 KLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVAGITG 125 (1973)
T ss_pred ceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccceeeecc
Confidence 5566787888899999742 0000 011146788899999999988 999999999999
Q ss_pred EECCCCCHHHHHHHHHh
Q psy3490 67 VSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 67 ~~~~~~~~~~~~~~lk~ 83 (88)
..+.+.+ +.....+|.
T Consensus 126 ~e~~~~T-S~~~~~vk~ 141 (1973)
T KOG4407|consen 126 LEPTSPT-SLPPYQVKA 141 (1973)
T ss_pred cccCCCc-cccHHHHhh
Confidence 9887776 444444443
No 67
>KOG4371|consensus
Probab=85.84 E-value=0.94 Score=35.72 Aligned_cols=59 Identities=25% Similarity=0.388 Sum_probs=41.6
Q ss_pred CcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 20 EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 20 ~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.||..+. +....+.++.....+.-.+ -.|++||.++.+||+.+++.-|.+++.+++.-
T Consensus 1158 ~~l~~~~a-----~~~~~~~~~~~~~~~~~~~-pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~ 1216 (1332)
T KOG4371|consen 1158 GSLGVQIA-----SLSGRVCIKQLTSEPAISH-PDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGG 1216 (1332)
T ss_pred CCCCceec-----cCccceehhhcccCCCCCC-CCcchhhhhhhccceeeechhhHHHHHHHhcc
Confidence 47787774 1111245555544443333 34899999999999999999999999999854
No 68
>KOG3834|consensus
Probab=84.96 E-value=3.4 Score=29.58 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=37.7
Q ss_pred cEEEEEECCCCCc---ccEEEEeCCC-CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEE
Q psy3490 9 SEIVVVPKAKGEI---LGVVIVESGW-GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64 (88)
Q Consensus 9 ~~~~~i~~~~~~~---lG~~i~~~~~-~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~V 64 (88)
.|++.|......+ ||++|.--.. ..-..-+-|.+|.+.+||+++|...-.|.|+-+
T Consensus 78 ~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~ 137 (462)
T KOG3834|consen 78 VRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGI 137 (462)
T ss_pred eEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecc
Confidence 3667777665556 8888842111 111224679999999999999944478998765
No 69
>KOG0792|consensus
Probab=83.05 E-value=0.74 Score=36.13 Aligned_cols=68 Identities=21% Similarity=0.328 Sum_probs=50.2
Q ss_pred CCCcccEEEEeCCCCCC----CCcEEEEEEC-------------CCChhhh-hCCCCCCCEEEEECCEECCCCCHHHHHH
Q psy3490 18 KGEILGVVIVESGWGSM----LPTVVIANLA-------------PAGAAAR-CGQLNIGDQIIAVNGVSLVGLPLSTCQT 79 (88)
Q Consensus 18 ~~~~lG~~i~~~~~~~~----~~~i~I~~v~-------------~g~~a~~-~g~l~~gd~i~~Vng~~~~~~~~~~~~~ 79 (88)
..+.+||.+. |+.+.. ..+..++++. |+++|+. .-++..||.++.|||.++....|++.+.
T Consensus 714 ~~g~~g~~~~-g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs 792 (1144)
T KOG0792|consen 714 PPGRFGFNLK-GGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVS 792 (1144)
T ss_pred CCcccccccc-chhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHH
Confidence 3457888886 333222 1246677777 8887754 4467789999999999999999999999
Q ss_pred HHHhCCC
Q psy3490 80 YIKVNHH 86 (88)
Q Consensus 80 ~lk~~~~ 86 (88)
+++....
T Consensus 793 ~irs~r~ 799 (1144)
T KOG0792|consen 793 LIRSPRE 799 (1144)
T ss_pred HHhhhhh
Confidence 9987653
No 70
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=82.49 E-value=4.5 Score=25.66 Aligned_cols=49 Identities=20% Similarity=0.397 Sum_probs=35.3
Q ss_pred EEEEEECCCCC-------cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEE
Q psy3490 10 EIVVVPKAKGE-------ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64 (88)
Q Consensus 10 ~~~~i~~~~~~-------~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~V 64 (88)
+.+.+...++. ..|+.+.. ....+.|..+..||+|+++| +.-+..|.+|
T Consensus 94 k~v~lpl~~~~~g~eRL~~~GL~l~~-----e~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v 149 (183)
T PF11874_consen 94 KTVLLPLGDGADGEERLEAAGLTLME-----EGGKVIVDEVEFGSPAEKAG-IDFDWEITEV 149 (183)
T ss_pred EEEEEEcCCCCCHHHHHHhCCCEEEe-----eCCEEEEEecCCCCHHHHcC-CCCCcEEEEE
Confidence 55656654441 45777752 12238999999999999998 9999988776
No 71
>KOG1421|consensus
Probab=80.68 E-value=5.2 Score=30.62 Aligned_cols=45 Identities=20% Similarity=0.108 Sum_probs=38.9
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
++|+...-.||||.. + |+.-..|..|||+.+. ++++-+.+++.-.
T Consensus 863 gvyvt~rg~gspalq-~-l~aa~fitavng~~t~--~lddf~~~~~~ip 907 (955)
T KOG1421|consen 863 GVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDTN--TLDDFYHMLLEIP 907 (955)
T ss_pred ceEEeecccCChhHh-h-cchheeEEEecccccC--cHHHHHHHHhhCC
Confidence 699999999999998 4 9999999999999885 7788888887543
No 72
>KOG3834|consensus
Probab=80.00 E-value=3.2 Score=29.69 Aligned_cols=45 Identities=20% Similarity=0.238 Sum_probs=34.5
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
+..|.+|.++++|+++|..---|.|.+|||..+.+- -+....++|
T Consensus 16 g~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk 60 (462)
T KOG3834|consen 16 GYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLK 60 (462)
T ss_pred eEEEEEeecCChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHH
Confidence 478899999999999995566899999999988632 344444444
No 73
>KOG2921|consensus
Probab=78.57 E-value=6.2 Score=28.20 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=29.7
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCC
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~ 72 (88)
++.|..+...||+.--..|.+||.|.++||-++.+.
T Consensus 221 gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v 256 (484)
T KOG2921|consen 221 GVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKV 256 (484)
T ss_pred eEEEEeccccCCCcCcccCCccceEEecCCcccCCH
Confidence 578888888888765445999999999999999743
No 74
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=69.72 E-value=4.1 Score=28.29 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=28.3
Q ss_pred EEEEEECCCC---hhhhhCCCCCCCEEEEECCEECCCCCHHHHHH
Q psy3490 38 VVIANLAPAG---AAARCGQLNIGDQIIAVNGVSLVGLPLSTCQT 79 (88)
Q Consensus 38 i~I~~v~~g~---~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~ 79 (88)
++..++..|. .++..|.|++||.++.|-|.+-. ++.|++.
T Consensus 84 ~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYD--TLeevIG 126 (416)
T COG4100 84 LVRPQIISGTHAIACALFGILRPGDELLYITGSPYD--TLEEVIG 126 (416)
T ss_pred eeeeeeecchhHHHHHHHhccCCCCeEEEecCCcch--hHHHHhc
Confidence 3344455553 56778999999999999998765 5666554
No 75
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=64.57 E-value=12 Score=23.56 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=30.4
Q ss_pred hCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 52 CGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 52 ~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.+.+..||+++-|+..-.++-+..++++++++++
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~G 149 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAG 149 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCC
Confidence 3557899999999999999999999999999875
No 76
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=62.75 E-value=6.1 Score=27.47 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=27.0
Q ss_pred EEEEEECCCChhhhhCCCCCCCEEEEECCEEC
Q psy3490 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69 (88)
Q Consensus 38 i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~ 69 (88)
+-+.++.+.++|+.++ ...||.|+-+|+.++
T Consensus 65 l~~lrv~~~~~~e~~~-~~~~dyilg~n~Dp~ 95 (417)
T COG5233 65 LEVLRVNPESPAEKAG-MVVGDYILGINEDPL 95 (417)
T ss_pred hhheeccccChhHhhc-cccceeEEeecCCcH
Confidence 4567789999999998 889999999998765
No 77
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=62.28 E-value=7.5 Score=23.42 Aligned_cols=28 Identities=7% Similarity=0.259 Sum_probs=21.2
Q ss_pred hCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 52 CGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 52 ~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
..++.+|+.|+++.+ .+.+.+.+.++.+
T Consensus 94 varVk~G~iifEi~~-----~~~~~a~~al~~a 121 (138)
T PRK09203 94 VAVVKPGRILFEIAG-----VSEELAREALRLA 121 (138)
T ss_pred EEEECCCCEEEEEeC-----CCHHHHHHHHHHH
Confidence 345788999999988 4567788888765
No 78
>KOG1945|consensus
Probab=62.04 E-value=6.6 Score=27.48 Aligned_cols=64 Identities=27% Similarity=0.353 Sum_probs=50.2
Q ss_pred cccEEEEeCCCC----CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 21 ILGVVIVESGWG----SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 21 ~lG~~i~~~~~~----~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
++|+++.+.+.. ....++++.+..+|..-++.++..+-|.+.++.+.....++.....+..+.+
T Consensus 111 g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~~~r~g~~sved~~~s~~~k~lp~vp~s~~~es~g~S 178 (377)
T KOG1945|consen 111 GLGVSIIGMGVGKKSGLEELGIFVKSATSGGAVHRDGRWSVEDVEVSVDSKSLPGVPFSWFAESLGGS 178 (377)
T ss_pred CCCccccccccchhccchhhcceeecccccccccccccccccccccccccCCCCCcchhhhhcccccc
Confidence 788777532221 1233689999999999999999999999999999988888888887776654
No 79
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=61.28 E-value=7.4 Score=22.40 Aligned_cols=28 Identities=14% Similarity=0.276 Sum_probs=19.7
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 53 GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 53 g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.++++|+.|+++.+.+. .+.+.+.++.+
T Consensus 74 a~v~~G~iifEi~~~~~----~~~~~~alk~a 101 (112)
T cd01433 74 ARVKPGQILFEVRGVPE----EEVAKEALRRA 101 (112)
T ss_pred EEECCCCEEEEEeCcCc----HHHHHHHHHHh
Confidence 34677999999988764 55666666543
No 80
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=58.20 E-value=8.6 Score=22.80 Aligned_cols=27 Identities=11% Similarity=0.361 Sum_probs=20.3
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 53 GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 53 g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.++.+|+.|+++.+ .+.+.+...|+.+
T Consensus 94 arV~~G~ilfEi~~-----~~~~~a~~al~~a 120 (126)
T TIGR01164 94 AVVKPGKILFEIAG-----VPEEVAREAFRLA 120 (126)
T ss_pred EEECCCCEEEEEeC-----CCHHHHHHHHHHH
Confidence 45788999999988 4567777777654
No 81
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=51.96 E-value=12 Score=23.51 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=21.9
Q ss_pred hhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 50 ARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 50 ~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
....++++|+.|++|.+... +.+.+.+.|+.+
T Consensus 121 ~wva~Vk~G~ilfei~~~~~---~~~~akeAlr~a 152 (172)
T PRK04199 121 GTAARVEKGQKIFTVRVNPE---HLEAAKEALRRA 152 (172)
T ss_pred EEEEEECcCCEEEEEEecCC---CHHHHHHHHHHh
Confidence 33345788999999976433 566777777654
No 82
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=50.81 E-value=24 Score=22.33 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=28.9
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+..|++++-|+..-.++-|...+++++++++
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aG 144 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAG 144 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCC
Confidence 6799999999999999999999999999875
No 83
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=48.60 E-value=30 Score=21.49 Aligned_cols=34 Identities=12% Similarity=0.329 Sum_probs=30.3
Q ss_pred hCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 52 CGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 52 ~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.|.+..|+.++-|+..-.++-|..++++++++++
T Consensus 101 ~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~G 134 (176)
T PRK13812 101 EGRLDEGEEVVVLEDIATTGQSAVDAVEALREAG 134 (176)
T ss_pred EecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCC
Confidence 3557799999999999999999999999999775
No 84
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=46.89 E-value=10 Score=26.89 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=18.4
Q ss_pred hhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490 49 AARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY 80 (88)
Q Consensus 49 a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~ 80 (88)
....|.|++||.++++.|.+-. |+++++.+
T Consensus 87 ~~Lfg~LrpGD~ll~~tG~PYD--TL~~VIG~ 116 (403)
T PF06838_consen 87 LALFGVLRPGDELLSITGKPYD--TLEEVIGI 116 (403)
T ss_dssp HHHHHH--TT-EEEESSSS--C--CHHHHHTS
T ss_pred HHHHhcCCCCCeEEEcCCCchh--hHHHHhCC
Confidence 3456779999999999998876 66666543
No 85
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=46.46 E-value=27 Score=22.04 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=29.3
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 54 QLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 54 ~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.+..|++++-|+..-.++-|...+++++++++
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aG 144 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQAG 144 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHCC
Confidence 47899999999999999999999999999875
No 86
>PTZ00173 60S ribosomal protein L10; Provisional
Probab=46.37 E-value=18 Score=23.52 Aligned_cols=31 Identities=10% Similarity=0.332 Sum_probs=22.3
Q ss_pred hCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 52 CGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 52 ~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..++++|+.|++|.+.+. ..+.+.+.|+.+.
T Consensus 126 vArVk~Gqiifei~~~~~---~~~~AkeALrrA~ 156 (213)
T PTZ00173 126 CARVRIGQILLSIRTKEA---YVPQAIEALRRAK 156 (213)
T ss_pred EEEECcCCEEEEEecccC---CHHHHHHHHHHhc
Confidence 345788999999977554 6677777777553
No 87
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=45.10 E-value=36 Score=21.80 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=29.6
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 53 GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 53 g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+..|+.++-|+..-.++-|..++++.+++++
T Consensus 113 g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G 145 (206)
T PRK13809 113 GLFTPGQTCLVINDMVSSGKSIIETAVALEEEG 145 (206)
T ss_pred cccCCCCEEEEEEeccccCHHHHHHHHHHHHCC
Confidence 446799999999999999999999999999775
No 88
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=44.04 E-value=37 Score=24.78 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=31.2
Q ss_pred hhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 51 RCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 51 ~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..|.+..||+++-|+..-.++-+..++++++++.+
T Consensus 386 ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG 420 (477)
T PRK05500 386 IEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAG 420 (477)
T ss_pred EecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCC
Confidence 34568899999999999999999999999999865
No 89
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=43.21 E-value=36 Score=20.91 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=29.5
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 53 GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 53 g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+..|+.++-|+..--++-+..++++.+++++
T Consensus 103 g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~G 135 (173)
T TIGR00336 103 GELLEGDKVVVVEDVITTGTSILEAVEIIQAAG 135 (173)
T ss_pred cCCCCCCEEEEEeccccChHHHHHHHHHHHHcC
Confidence 457789999999999999999999999999775
No 90
>KOG0572|consensus
Probab=42.96 E-value=41 Score=24.20 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=26.7
Q ss_pred CCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 57 IGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 57 ~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.|-+|+-|+..-+.+.|..++++|+|.++
T Consensus 355 ~GKrvvlVDDSIVRGtTs~~IVkmlreaG 383 (474)
T KOG0572|consen 355 EGKRVVLVDDSIVRGTTSSPIVKMLREAG 383 (474)
T ss_pred CCceEEEEecceeccCchHHHHHHHHHcC
Confidence 58899999999999999999999999875
No 91
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=42.57 E-value=46 Score=24.28 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=26.8
Q ss_pred CCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 57 IGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 57 ~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.|-+++-|+..-+.+.|..++++++|.++
T Consensus 347 ~GKrVvlVDDSIVRGTTsr~IV~mlReAG 375 (470)
T COG0034 347 KGKRVVLVDDSIVRGTTSRRIVQMLREAG 375 (470)
T ss_pred CCCeEEEEccccccCccHHHHHHHHHHhC
Confidence 58999999999999999999999999765
No 92
>KOG1703|consensus
Probab=42.47 E-value=10 Score=27.39 Aligned_cols=59 Identities=29% Similarity=0.383 Sum_probs=46.6
Q ss_pred cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
+|||... ++ .....+-+..+.+++.++... +..+|.+..+++..-..+.|.++....+.
T Consensus 9 ~~~~r~~-~~--~~~~~l~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (479)
T KOG1703|consen 9 PWGFRLQ-GG--DFLQPLRILRVTPGGKAADAE-LDPGDIIAAIDGENEETMTHLEAQNKIKG 67 (479)
T ss_pred Cceeeec-cc--ccccccceeccCCCCcccccc-ccccccccccccccccccccccccCcccc
Confidence 7888864 22 334458899999999988876 99999999999998888888887766543
No 93
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=42.15 E-value=46 Score=21.42 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=30.1
Q ss_pred hCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490 52 CGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH 86 (88)
Q Consensus 52 ~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~ 86 (88)
.|....|++++-|++.-.++.+.-++++.+++++-
T Consensus 106 eG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~ 140 (201)
T COG0461 106 EGGEVKGEKVVVVEDVITTGGSILEAVEALREAGA 140 (201)
T ss_pred EecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCC
Confidence 44466899999999999999999999999998753
No 94
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=40.91 E-value=27 Score=25.02 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=25.9
Q ss_pred EEEEECCCChhhhhCCCCCCCEEEEEC-CEECCCC
Q psy3490 39 VIANLAPAGAAARCGQLNIGDQIIAVN-GVSLVGL 72 (88)
Q Consensus 39 ~I~~v~~g~~a~~~g~l~~gd~i~~Vn-g~~~~~~ 72 (88)
.|+.+.+.+.++..| +..+|.+..|| +.....+
T Consensus 4 ~i~~v~~~~~~d~~G-fe~~~~l~~Vn~~~~~~~c 37 (414)
T COG1625 4 KISKVGGISGADCDG-FEEGDYLLKVNPGFGCKDC 37 (414)
T ss_pred ceeeccCCCcccccC-ccccceeeecCCCCCCCcC
Confidence 467788888888888 99999999998 6655544
No 95
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=40.88 E-value=24 Score=22.23 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=21.5
Q ss_pred hCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 52 CGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 52 ~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..++++|..|++|.+.+- +.+.+.+.|+.+.
T Consensus 123 vArVk~Gqiifei~~~~~---~~~~AkeAlr~A~ 153 (172)
T TIGR00279 123 AARVKIGQKIFSVWTKPS---NFDVAKEALRRAA 153 (172)
T ss_pred EEEECcCCEEEEEEeecC---CHHHHHHHHHHHh
Confidence 345788999999977542 5667777776553
No 96
>PLN02293 adenine phosphoribosyltransferase
Probab=39.81 E-value=48 Score=20.87 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=29.4
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 53 GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 53 g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+..|++++-|+..-.++-+...+++++++++
T Consensus 120 ~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~G 152 (187)
T PLN02293 120 GAVEPGERALVIDDLIATGGTLCAAINLLERAG 152 (187)
T ss_pred CccCCCCEEEEEeccccchHHHHHHHHHHHHCC
Confidence 447799999999999999999999999998765
No 97
>CHL00044 rpl16 ribosomal protein L16
Probab=38.95 E-value=16 Score=21.98 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=18.9
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 53 GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 53 g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.++++|+.|+++.+.+ ...+.+.++.+
T Consensus 95 a~V~~G~ilfEi~g~~-----~~~ak~al~~a 121 (135)
T CHL00044 95 AVVKPGRILYEMGGVS-----ETIARAAIKIA 121 (135)
T ss_pred EEECCCcEEEEEeCCC-----HHHHHHHHHHH
Confidence 4578899999998843 35666666643
No 98
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=37.69 E-value=31 Score=22.88 Aligned_cols=62 Identities=16% Similarity=0.009 Sum_probs=34.2
Q ss_pred CCCcccEEEEEECCCCCcccEEEEeCCCC--CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCC
Q psy3490 4 LNPVTSEIVVVPKAKGEILGVVIVESGWG--SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73 (88)
Q Consensus 4 ~~~~~~~~~~i~~~~~~~lG~~i~~~~~~--~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~ 73 (88)
+++.+.++..-..-.|+|||++-. +.. ..+...++.-..|...|+... .-+..+|.+++++.
T Consensus 116 ~d~~t~~~lg~~~y~GeGWgLt~d--~~~LimsdGsatL~frdP~tfa~~~~------v~VT~~g~pv~~LN 179 (262)
T COG3823 116 YDADTLEELGRFSYEGEGWGLTSD--DKNLIMSDGSATLQFRDPKTFAELDT------VQVTDDGVPVSKLN 179 (262)
T ss_pred EChHHhhhhcccccCCcceeeecC--CcceEeeCCceEEEecCHHHhhhcce------EEEEECCeeccccc
Confidence 444555555555566889998863 210 112224555566665555432 33566888887654
No 99
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=35.12 E-value=35 Score=20.92 Aligned_cols=34 Identities=9% Similarity=0.196 Sum_probs=22.3
Q ss_pred CChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 46 AGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 46 g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
|+|-.-..++++|..+++|.|.+-. .|.+.||.+
T Consensus 91 G~pegwaArVkpG~vlfei~g~~e~-----~A~EAlr~A 124 (146)
T COG0197 91 GKPEGWAARVKPGRVLFEIAGVPEE-----LAREALRRA 124 (146)
T ss_pred CCccEEEEEecCCcEEEEEecCcHH-----HHHHHHHHH
Confidence 3444444568899999999885542 366666644
No 100
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=34.86 E-value=48 Score=17.39 Aligned_cols=28 Identities=11% Similarity=0.353 Sum_probs=22.0
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
+.+||.++-=.|..++.++-+++.+.+.
T Consensus 38 v~~Gd~VLVHaG~Ai~~ideeeA~e~l~ 65 (68)
T PF01455_consen 38 VKVGDYVLVHAGFAIEKIDEEEAEETLD 65 (68)
T ss_dssp B-TT-EEEEETTEEEEEE-HHHHHHHHH
T ss_pred CCCCCEEEEecChhheeCCHHHHHHHHH
Confidence 7899999999999999999998887764
No 101
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=34.37 E-value=54 Score=20.37 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=25.3
Q ss_pred CCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 57 IGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 57 ~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.|-.|+-|+++-.++.|..++...|++++
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~G 179 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLELG 179 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHcC
Confidence 35678999999999999999999998764
No 102
>PRK13669 hypothetical protein; Provisional
Probab=33.24 E-value=66 Score=17.55 Aligned_cols=29 Identities=17% Similarity=0.070 Sum_probs=22.7
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
+..-....-|||..+.+.+-++.++.+..
T Consensus 42 ~C~~~~FAlVng~~V~a~t~eeL~~kI~~ 70 (78)
T PRK13669 42 ICSEGLFALVNGEVVEGETPEELVENIYA 70 (78)
T ss_pred CcccCceEEECCeEeecCCHHHHHHHHHH
Confidence 44445667799999999999999887753
No 103
>KOG3369|consensus
Probab=32.98 E-value=19 Score=22.91 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=20.8
Q ss_pred hhhhCCCCCCCEEEEECCEECCCCCHH
Q psy3490 49 AARCGQLNIGDQIIAVNGVSLVGLPLS 75 (88)
Q Consensus 49 a~~~g~l~~gd~i~~Vng~~~~~~~~~ 75 (88)
+.++| +++|..+.+|||.++.+....
T Consensus 47 ~~kdg-ik~~~~~~~vNg~~v~g~~~~ 72 (199)
T KOG3369|consen 47 GSKDG-IKVGHLVQAVNGENVNGYILY 72 (199)
T ss_pred ecccc-cchhheeeeecccccccceec
Confidence 45667 999999999999998766443
No 104
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=32.71 E-value=69 Score=23.31 Aligned_cols=29 Identities=7% Similarity=0.185 Sum_probs=26.3
Q ss_pred CCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 57 IGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 57 ~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.|-+|+-|+..-+++.|..+++++||+++
T Consensus 347 ~gk~VlLVDDvittGtTl~~~~~~Lk~aG 375 (471)
T PRK06781 347 EGKRVVMIDDSIVRGTTSKRIVRMLREAG 375 (471)
T ss_pred CCceEEEEeceeccchHHHHHHHHHHHcC
Confidence 47789999999999999999999999765
No 105
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=30.24 E-value=72 Score=19.54 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=27.8
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+..|+.++-|+..-.++.|...+.+.+++++
T Consensus 111 ~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~G 141 (175)
T PRK02304 111 IKPGDRVLIVDDLLATGGTLEAAIKLLERLG 141 (175)
T ss_pred cCCCCEEEEEeCCccccHHHHHHHHHHHHcC
Confidence 5789999999999999999999999998764
No 106
>PRK09213 pur operon repressor; Provisional
Probab=30.23 E-value=97 Score=20.89 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=29.1
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 54 QLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 54 ~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.+..|++++-|++.--.+-+...+++++++++
T Consensus 192 ~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~G 223 (271)
T PRK09213 192 SLKEGSRVLIVDDFMKAGGTINGMISLLKEFD 223 (271)
T ss_pred hcCCcCEEEEEeeecccCHhHHHHHHHHHHCC
Confidence 37899999999999999999999999999765
No 107
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=30.05 E-value=32 Score=20.25 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=11.8
Q ss_pred CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEE
Q psy3490 35 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68 (88)
Q Consensus 35 ~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~ 68 (88)
..++|+.. ...-. +..|++||+|..-+|..
T Consensus 61 ~HPF~~~~-~gWv~---A~~L~~GD~L~~~~G~~ 90 (130)
T PF07591_consen 61 NHPFWVEG-KGWVE---AEDLKVGDRLLTADGSW 90 (130)
T ss_dssp ------------EE---GGG--TTSEEEEE-SSE
T ss_pred ccccccch-Hhhhh---HhhCCCCCEEEcCCCCE
Confidence 34566642 12223 34599999999998874
No 108
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=29.80 E-value=87 Score=21.09 Aligned_cols=32 Identities=9% Similarity=0.226 Sum_probs=29.1
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 54 QLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 54 ~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.+..|++++-|++.--.+-+...+++++++++
T Consensus 190 ~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~G 221 (268)
T TIGR01743 190 SLKTGSKVLIIDDFMKAGGTINGMINLLDEFD 221 (268)
T ss_pred hCCCcCEEEEEeeecccCHHHHHHHHHHHHCC
Confidence 37899999999999999999999999999765
No 109
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=29.58 E-value=56 Score=23.79 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=27.0
Q ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 56 NIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 56 ~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..|..|+-|+..-+++.|...++++|++++
T Consensus 354 i~gk~VlLVDDsittGtTl~~~~~~L~~aG 383 (474)
T PRK06388 354 ISGKRIVLVDDSIVRGNTMRFIVKIMRKYG 383 (474)
T ss_pred ccCceEEEEeCeECcHHHHHHHHHHHHHcC
Confidence 367899999999999999999999999765
No 110
>PRK00078 Maf-like protein; Reviewed
Probab=29.52 E-value=1.2e+02 Score=19.13 Aligned_cols=28 Identities=25% Similarity=0.126 Sum_probs=22.0
Q ss_pred CCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 56 NIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 56 ~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
-..|+++.+||.-+..- +.++|..+|+.
T Consensus 68 I~aDTvV~~~g~ilgKP~~~eeA~~~L~~ 96 (192)
T PRK00078 68 IGCDTIVAFNGKVLGKPKDEEDAFEMLKA 96 (192)
T ss_pred EEeCeEEEECCEEeCCCCCHHHHHHHHHH
Confidence 34689999999877544 88899999874
No 111
>PRK02478 Maf-like protein; Reviewed
Probab=29.24 E-value=1.3e+02 Score=19.26 Aligned_cols=27 Identities=7% Similarity=0.055 Sum_probs=21.6
Q ss_pred CCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 57 IGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 57 ~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
..|+++.++|.-+..- +.++|.++|+.
T Consensus 74 ~aDTvV~~~g~ilgKP~~~~eA~~~L~~ 101 (199)
T PRK02478 74 GCDQTMSLGDEVFHKPKDMEEARRHLQK 101 (199)
T ss_pred EeCeEEEECCEEecCCCCHHHHHHHHHH
Confidence 4689999999887544 88999999874
No 112
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=28.98 E-value=91 Score=19.54 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=28.1
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+..|+.++-|+..-.++-+...+++++++++
T Consensus 111 ~~~G~rVlIVDDvitTG~T~~~ai~ll~~aG 141 (187)
T PRK12560 111 IEKGDRVAIIDDTLSTGGTVIALIKAIENSG 141 (187)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCC
Confidence 6789999999999999999999999999765
No 113
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=28.60 E-value=71 Score=19.46 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=27.5
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+..|.+++-|+..-.++-|..++.+.+++++
T Consensus 106 ~~~gk~VLIVDDIitTG~Tl~~a~~~L~~~G 136 (169)
T TIGR01090 106 IKPGQRVLIVDDLLATGGTAEATDELIRKLG 136 (169)
T ss_pred cCCcCEEEEEeccccchHHHHHHHHHHHHcC
Confidence 4488999999999999999999999998764
No 114
>KOG1712|consensus
Probab=28.34 E-value=1.2e+02 Score=19.17 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=30.0
Q ss_pred hhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 50 ARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 50 ~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
-..+.+.+|++++-|+..--++=|..-|.+++.+.+
T Consensus 114 mq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~g 149 (183)
T KOG1712|consen 114 MQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVG 149 (183)
T ss_pred eeccccCCCCeEEEEechhhcCccHHHHHHHHHHhc
Confidence 345679999999999999888889999999887643
No 115
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=28.27 E-value=65 Score=17.98 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=27.4
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
...|..++-|++.--++.|..++.+.|++.+
T Consensus 85 ~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g 115 (125)
T PF00156_consen 85 DIKGKRVLIVDDVIDTGGTLKEAIELLKEAG 115 (125)
T ss_dssp SGTTSEEEEEEEEESSSHHHHHHHHHHHHTT
T ss_pred cccceeEEEEeeeEcccHHHHHHHHHHHhCC
Confidence 5578899999999999999999999998764
No 116
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=28.25 E-value=1e+02 Score=19.16 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=28.5
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 54 QLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 54 ~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.+..||+++-|+..--++-|..-..+++.+++
T Consensus 112 ~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~g 143 (179)
T COG0503 112 ALKPGDRVLIVDDLLATGGTALALIELLEQAG 143 (179)
T ss_pred hCCCCCEEEEEecchhcChHHHHHHHHHHHCC
Confidence 48899999999999999999999999998765
No 117
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=28.11 E-value=1.4e+02 Score=18.80 Aligned_cols=29 Identities=7% Similarity=0.148 Sum_probs=22.6
Q ss_pred CCCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 55 LNIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
+-..|+++..+|.-+..- +.++|.++|+.
T Consensus 66 vI~aDTvV~~~g~ilgKP~~~~eA~~~L~~ 95 (183)
T TIGR00172 66 IIGADTVVILDGEIYGKPKDKEEAAEFLRK 95 (183)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHH
Confidence 334689999999877544 88999999874
No 118
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=27.79 E-value=72 Score=19.73 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=26.7
Q ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 56 NIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 56 ~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..|+.++-|++.-.++.|...+++++++++
T Consensus 118 ~~gk~VLIVDDiitTG~Tl~aa~~~L~~~G 147 (178)
T PRK07322 118 LKGKRVAIVDDVVSTGGTLTALERLVERAG 147 (178)
T ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHcC
Confidence 468999999999999999999999998764
No 119
>PRK14367 Maf-like protein; Provisional
Probab=27.54 E-value=1.3e+02 Score=19.22 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=22.0
Q ss_pred CCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 56 NIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 56 ~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
-..|+++.+||.-+..- +.++|.++|+.
T Consensus 73 I~aDTvV~~dg~IlgKP~~~eeA~~~L~~ 101 (202)
T PRK14367 73 ITADTCVVSDGIILGKPRSQAEAIEFLNR 101 (202)
T ss_pred EEeCcEEEECCEEecCCCCHHHHHHHHHH
Confidence 34688999999877544 88999999874
No 120
>PRK00032 Maf-like protein; Reviewed
Probab=27.47 E-value=1.4e+02 Score=18.84 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=21.6
Q ss_pred CCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 57 IGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 57 ~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
..|+++.++|.-+..- +.++|..+|+.
T Consensus 68 ~aDTvV~~~g~IlgKP~~~eeA~~~L~~ 95 (190)
T PRK00032 68 GADTIVVLDGEVLEKPRDAADAAAMLRA 95 (190)
T ss_pred EeCeEEEECCEEecCCCCHHHHHHHHHH
Confidence 4689999999877544 88999999874
No 121
>PRK14368 Maf-like protein; Provisional
Probab=27.41 E-value=1.3e+02 Score=19.09 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=21.9
Q ss_pred CCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 56 NIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 56 ~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
-..|+++.++|.-+..- +.++|.++|+.
T Consensus 69 I~aDTvV~~~g~ilgKP~~~~eA~~~L~~ 97 (193)
T PRK14368 69 IGADTIVVCDGEIMGKPKDEADAVRMLKK 97 (193)
T ss_pred EEeCcEEEECCEEecCCCCHHHHHHHHHH
Confidence 34689999999877544 88999999874
No 122
>PRK01839 Maf-like protein; Reviewed
Probab=27.13 E-value=1.4e+02 Score=19.21 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=22.6
Q ss_pred CCCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 55 LNIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
+-..|+++.++|.-+..- +.++|.++|+.
T Consensus 84 vI~aDTvV~~~g~IlgKP~~~eeA~~~L~~ 113 (209)
T PRK01839 84 VLVADTTVTIDGAILGKPADAADALAMLTR 113 (209)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHH
Confidence 334689999999877544 88999999874
No 123
>PRK14364 Maf-like protein; Provisional
Probab=26.97 E-value=1.5e+02 Score=18.64 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=21.8
Q ss_pred CCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 56 NIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 56 ~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
-..|+++.++|.-+..- +.++|..+|+.
T Consensus 61 I~aDTvV~~~g~ilgKP~~~eeA~~~L~~ 89 (181)
T PRK14364 61 IAADTSLGLDGQIIGKPDSKQHAFDIWKQ 89 (181)
T ss_pred EEeCeEEEECCEEecCCCCHHHHHHHHHH
Confidence 34689999999877544 88899998874
No 124
>PRK00148 Maf-like protein; Reviewed
Probab=26.76 E-value=1.4e+02 Score=18.98 Aligned_cols=29 Identities=10% Similarity=-0.007 Sum_probs=22.6
Q ss_pred CCCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 55 LNIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
+-..|+++.+||.-+..- +.++|.++|+.
T Consensus 64 vI~aDTvV~~~g~Il~KP~~~eeA~~~L~~ 93 (194)
T PRK00148 64 VLGCDSMLLIDGRLLGKPHTPEEAIERWQQ 93 (194)
T ss_pred EEEeCcEEEECCEEecCCCCHHHHHHHHHH
Confidence 334699999999877544 88999999874
No 125
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=26.68 E-value=1.5e+02 Score=18.49 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=22.5
Q ss_pred CCCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 55 LNIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
+-..|+++..+|.-+..- +.++|.++|+.
T Consensus 63 iI~aDtvv~~~g~il~KP~~~~eA~~~L~~ 92 (180)
T cd00555 63 VIGADTVVVLDGRILGKPKDREEAREMLKR 92 (180)
T ss_pred EEEecEEEEECCEEEcCCCCHHHHHHHHHH
Confidence 334699999999877544 88899998874
No 126
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=26.57 E-value=1.2e+02 Score=16.39 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=24.4
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
..+||.++-=.|..++.++-+++.+.+.
T Consensus 36 ~~vGD~VLVH~G~Ai~~ide~eA~e~l~ 63 (76)
T TIGR00074 36 VKVGDYVLVHVGFAISVLDEEEARETLD 63 (76)
T ss_pred CCCCCEEEEecChhhhhCCHHHHHHHHH
Confidence 7799999988999999999988887764
No 127
>PRK03760 hypothetical protein; Provisional
Probab=26.54 E-value=62 Score=18.85 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=17.5
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEE
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQII 62 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~ 62 (88)
..+|-.+..|..+. .| +++||+|.
T Consensus 90 a~~VLEl~aG~~~~-~g-i~~Gd~v~ 113 (117)
T PRK03760 90 ARYIIEGPVGKIRV-LK-VEVGDEIE 113 (117)
T ss_pred ceEEEEeCCChHHH-cC-CCCCCEEE
Confidence 45888887765544 45 99999984
No 128
>PRK04056 Maf-like protein; Reviewed
Probab=26.19 E-value=1.7e+02 Score=18.41 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=22.5
Q ss_pred CCCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 55 LNIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
+-..|+++..+|.-+..- +.+++.++|+.
T Consensus 64 vI~aDTvV~~~g~ilgKP~~~~eA~~~L~~ 93 (180)
T PRK04056 64 LLVADSVVSCGNKILRKAKDKEEAREMLKL 93 (180)
T ss_pred EEEeCEEEEECCEEecCCCCHHHHHHHHHH
Confidence 334699999999877544 88899999874
No 129
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=26.14 E-value=72 Score=23.28 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=26.8
Q ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 56 NIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 56 ~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..|.+|+-|+..-+++.|..+++++|++++
T Consensus 346 v~gk~VlLVDDsittGtTl~~~~~~L~~aG 375 (475)
T PRK07631 346 VEGKRVVMVDDSIVRGTTSRRIVTMLREAG 375 (475)
T ss_pred cCCceEEEEeeeeccHHHHHHHHHHHHHcC
Confidence 347899999999999999999999999764
No 130
>PRK14361 Maf-like protein; Provisional
Probab=26.03 E-value=1.6e+02 Score=18.65 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=22.5
Q ss_pred CCCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 55 LNIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
+-..|+++.++|.-+..- +.++|.++|+.
T Consensus 61 vI~aDTvV~~~g~ilgKP~~~eeA~~~L~~ 90 (187)
T PRK14361 61 VIAADTVVALGGVLLAKPADEAENEAFLRV 90 (187)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHH
Confidence 345699999999877544 88899999874
No 131
>PRK06031 phosphoribosyltransferase; Provisional
Probab=25.83 E-value=94 Score=20.36 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=28.0
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+..|++++-|+..-.++-|...+.+++++++
T Consensus 151 ~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~G 181 (233)
T PRK06031 151 LLEGRRVALIDDVISSGASIVAGLRLLAACG 181 (233)
T ss_pred cCCCCEEEEEEeEccccHHHHHHHHHHHHcC
Confidence 4589999999999999999999999999765
No 132
>PRK04694 Maf-like protein; Reviewed
Probab=25.68 E-value=1.6e+02 Score=18.64 Aligned_cols=29 Identities=3% Similarity=0.000 Sum_probs=22.3
Q ss_pred CCCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 55 LNIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
+-..|+++.++|.-+..- +.++|..+|+.
T Consensus 67 vI~aDTvv~~~g~ilgKP~~~~eA~~~L~~ 96 (190)
T PRK04694 67 VLGSDTEVVLGERVFGKPVDVDDAIAMLRA 96 (190)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHH
Confidence 334689999999877544 88899998874
No 133
>PRK00648 Maf-like protein; Reviewed
Probab=25.60 E-value=1.6e+02 Score=18.57 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=22.4
Q ss_pred CCCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 55 LNIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
+-..|+++.++|.-+..- +.++|.++|+.
T Consensus 68 VI~aDTvV~~~g~ilgKP~~~~eA~~~L~~ 97 (191)
T PRK00648 68 IITADTIVWYDGKVLGKPKDEEEAVEMLRT 97 (191)
T ss_pred EEEeCeEEEECCEEeCCCCCHHHHHHHHHH
Confidence 334689999999877544 88899998874
No 134
>PRK14363 Maf-like protein; Provisional
Probab=25.52 E-value=1.7e+02 Score=18.77 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=22.4
Q ss_pred CCCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 55 LNIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
+-..|+++.++|.-+..- +.++|.++|+.
T Consensus 64 vI~aDTVV~~~g~IlgKP~~~eeA~~~L~~ 93 (204)
T PRK14363 64 VIGSDTVVVLDGNILGKPESLEEAKGMLKK 93 (204)
T ss_pred EEEeCeEEEECCEEcCCCCCHHHHHHHHHH
Confidence 334689999999877544 88899999874
No 135
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=25.30 E-value=63 Score=15.92 Aligned_cols=18 Identities=17% Similarity=0.427 Sum_probs=14.4
Q ss_pred ECCCCCHHHHHHHHHhCC
Q psy3490 68 SLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 68 ~~~~~~~~~~~~~lk~~~ 85 (88)
++.+++.++|.+.|+..+
T Consensus 5 d~~g~~~~~a~~~l~~~g 22 (63)
T PF03793_consen 5 DLVGMTYDEAKSILEAAG 22 (63)
T ss_dssp TTTTSBHHHHHHHHHHTT
T ss_pred CcCCCcHHHHHHHHHHCC
Confidence 467889999999998753
No 136
>PRK14365 Maf-like protein; Provisional
Probab=25.27 E-value=1.6e+02 Score=18.71 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=22.1
Q ss_pred CCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 56 NIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 56 ~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
-..|+++..+|.-+..- ++++|.++|+.
T Consensus 67 I~aDTvV~~~g~Il~KP~~~~eA~~~L~~ 95 (197)
T PRK14365 67 ISADTSVFCNGEVLGKPASPENAEEMLEK 95 (197)
T ss_pred EEeCeEEEECCEEecCCCCHHHHHHHHHH
Confidence 34699999999877544 88999999874
No 137
>PRK01441 Maf-like protein; Reviewed
Probab=25.14 E-value=1.8e+02 Score=18.70 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=22.7
Q ss_pred CCCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 55 LNIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
+-..|+++..||.-+..- +.++|.++|+.
T Consensus 75 vI~aDTvV~~~g~il~KP~~~~eA~~~L~~ 104 (207)
T PRK01441 75 ILAADTVVAVGRRILPKAELVDEASQCLRL 104 (207)
T ss_pred EEecCEEEEECCEEcCCCCCHHHHHHHHHH
Confidence 445699999999877544 88899998874
No 138
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=25.13 E-value=1.1e+02 Score=20.04 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=28.5
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+..|++++-|++.--++-|...+.+++++.+
T Consensus 173 l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~g 203 (238)
T PRK08558 173 LKKGDRVLIVDDIIRSGETQRALLDLARQAG 203 (238)
T ss_pred cCCcCEEEEEecccccCHHHHHHHHHHHHcC
Confidence 7899999999999999999999999998765
No 139
>PRK04425 Maf-like protein; Reviewed
Probab=25.04 E-value=1.6e+02 Score=18.70 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=22.1
Q ss_pred CCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 56 NIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 56 ~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
-..|+++.++|.-+..- +.++|..+|+.
T Consensus 69 I~aDTvV~~~g~ilgKP~~~eeA~~~L~~ 97 (196)
T PRK04425 69 VGADQVAWCDGRQWGKPMNLANAQKMLMH 97 (196)
T ss_pred EEeCeEEEECCEEecCCCCHHHHHHHHHH
Confidence 34699999999877544 88999999874
No 140
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=24.61 E-value=1.6e+02 Score=20.41 Aligned_cols=43 Identities=33% Similarity=0.366 Sum_probs=27.8
Q ss_pred cccEEEEeCCCCCCCC-----cEEEEEECCCChhhhhCCCCCCCEEEEE
Q psy3490 21 ILGVVIVESGWGSMLP-----TVVIANLAPAGAAARCGQLNIGDQIIAV 64 (88)
Q Consensus 21 ~lG~~i~~~~~~~~~~-----~i~I~~v~~g~~a~~~g~l~~gd~i~~V 64 (88)
.||+.|++ |...++. .+.|..+...-+--+++.=++||.++.+
T Consensus 122 kfgvpivG-Ghthpd~~y~vl~v~i~gl~~~e~Ii~s~~Ak~GD~lI~~ 169 (324)
T COG2144 122 KFGVPIVG-GHTHPDTPYCVLDVVIGGLIAEEPIITSGTAKPGDLLIFV 169 (324)
T ss_pred hcCCceec-CccCCCCCCceeeeEEecccccccccccCCCCcCCEEEEE
Confidence 78999984 4433322 2345555555566666778999999765
No 141
>PRK02141 Maf-like protein; Reviewed
Probab=24.51 E-value=1.7e+02 Score=18.86 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=21.7
Q ss_pred CCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 57 IGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 57 ~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
..|+++.++|.-+..- +.++|.++|+.
T Consensus 77 ~aDTvV~~~g~ilgKP~~~~eA~~mL~~ 104 (207)
T PRK02141 77 GSDQVATFDGLQIGKPGTHERALAQLQA 104 (207)
T ss_pred EeCeEEEECCEEecCCCCHHHHHHHHHH
Confidence 4689999999877544 88999999874
No 142
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=24.40 E-value=98 Score=19.02 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=27.2
Q ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 56 NIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 56 ~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..|++++-|+..-.++-|...+++++++++
T Consensus 102 ~~g~~VlIVDDvi~TG~T~~~~~~~l~~~G 131 (170)
T PRK13811 102 VKGKRVLLVEDVTTSGGSALYGIEQLRAAG 131 (170)
T ss_pred cCCCEEEEEEecccccHHHHHHHHHHHHCC
Confidence 479999999999999999999999999765
No 143
>PRK14362 Maf-like protein; Provisional
Probab=24.05 E-value=1.9e+02 Score=18.60 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=22.0
Q ss_pred CCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 56 NIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 56 ~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
-..|.++..+|.-+..- +.++|..+|+.
T Consensus 77 I~ADTvV~~~g~ilgKP~~~eeA~~~L~~ 105 (207)
T PRK14362 77 IAADTVVALDGMILGKPADRADALSMLRR 105 (207)
T ss_pred EEeCeEEEeCCEEcCCCCCHHHHHHHHHH
Confidence 34689999999887544 88899998874
No 144
>PRK14366 Maf-like protein; Provisional
Probab=24.02 E-value=1.8e+02 Score=18.53 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=22.0
Q ss_pred CCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 56 NIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 56 ~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
-..|+++..+|.-+..- +.++|.++|+.
T Consensus 70 I~ADTvV~~~g~ilgKP~~~eeA~~mL~~ 98 (195)
T PRK14366 70 LGADTVVCCGRRILLKAETEEQAEEYLEL 98 (195)
T ss_pred EEeCeEEEECCEEecCCCCHHHHHHHHHH
Confidence 34689999999877544 88999999874
No 145
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=24.01 E-value=1.3e+02 Score=16.27 Aligned_cols=29 Identities=17% Similarity=0.026 Sum_probs=22.8
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
+..-....-|||..+.+-+-++.+..++.
T Consensus 42 ~C~~~pFAlVnG~~V~A~t~eeL~~kI~~ 70 (78)
T PF07293_consen 42 PCAKKPFALVNGEIVAAETAEELLEKIKE 70 (78)
T ss_pred CCCCCccEEECCEEEecCCHHHHHHHHHH
Confidence 44455667899999999999998887753
No 146
>PRK01526 Maf-like protein; Reviewed
Probab=23.84 E-value=1.8e+02 Score=18.69 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=21.8
Q ss_pred CCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 56 NIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 56 ~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
-..|+++.++|.-+..- +.++|..+|+.
T Consensus 74 I~aDTvV~~~g~IlgKP~~~~eA~~mL~~ 102 (205)
T PRK01526 74 IAADTVAAVGRRILPKATTYEEVKNCIKM 102 (205)
T ss_pred EEeCeEEEECCEEecCCCCHHHHHHHHHH
Confidence 34689999999877543 88899998874
No 147
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=23.80 E-value=1.1e+02 Score=19.22 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=27.4
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+..|+.++-|+..--++-|...+++.++..+
T Consensus 102 l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~G 132 (187)
T TIGR01367 102 VKPGEKFVAVEDVVTTGGSLLEAIRAIEGQG 132 (187)
T ss_pred CCCCCEEEEEEeeecchHHHHHHHHHHHHcC
Confidence 4579999999999999999999999998654
No 148
>PRK00884 Maf-like protein; Reviewed
Probab=23.71 E-value=1.8e+02 Score=18.47 Aligned_cols=29 Identities=10% Similarity=0.083 Sum_probs=22.4
Q ss_pred CCCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 55 LNIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
+-..|+++..+|.-+..- +.++|.++|+.
T Consensus 65 VI~aDTvV~~~g~ilgKP~~~eeA~~~L~~ 94 (194)
T PRK00884 65 IIGSDQVCVLDGEITGKPLTEENARAQLRK 94 (194)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHH
Confidence 334699999999877544 88899998874
No 149
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=23.57 E-value=93 Score=22.47 Aligned_cols=29 Identities=10% Similarity=0.229 Sum_probs=26.4
Q ss_pred CCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 57 IGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 57 ~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.|-.|+-|+..-+++.|..+++++|++++
T Consensus 333 ~gk~VlLVDD~IttGtTl~~~~~~L~~aG 361 (442)
T PRK08341 333 NGKRVVLVDDSIVRGTTMKRIVKMLRDAG 361 (442)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHhcC
Confidence 57889999999999999999999999764
No 150
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=23.41 E-value=1.3e+02 Score=18.83 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=27.6
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
...|+.++-|+..-.++.|...+++++++.+
T Consensus 110 ~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~G 140 (202)
T PRK00455 110 RLFGKRVLVVEDVITTGGSVLEAVEAIRAAG 140 (202)
T ss_pred CCCCCEEEEEecccCCcHHHHHHHHHHHHcC
Confidence 4569999999999999999999999998764
No 151
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=23.31 E-value=2.1e+02 Score=18.33 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=22.9
Q ss_pred CCCCEEEEECCEECCCC-CHHHHHHHHHhC
Q psy3490 56 NIGDQIIAVNGVSLVGL-PLSTCQTYIKVN 84 (88)
Q Consensus 56 ~~gd~i~~Vng~~~~~~-~~~~~~~~lk~~ 84 (88)
-..|.++.++|.-+... +.++|.++|+.-
T Consensus 68 igaDtvv~ldgrilgKP~~~~eA~~~L~~l 97 (193)
T COG0424 68 IGADTVVVLDGRILGKPKDEEEAREMLRKL 97 (193)
T ss_pred EecCeEEEECCEEecCCCCHHHHHHHHHHh
Confidence 34699999999987544 888999998753
No 152
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=23.17 E-value=89 Score=15.94 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=14.2
Q ss_pred ECCCChhhhhCCCCCCCEEEEE
Q psy3490 43 LAPAGAAARCGQLNIGDQIIAV 64 (88)
Q Consensus 43 v~~g~~a~~~g~l~~gd~i~~V 64 (88)
+..|=|...+-.|+.||.|+.|
T Consensus 33 I~NGF~~~~d~~L~e~D~v~~I 54 (57)
T PF14453_consen 33 ILNGFPTKEDIELKEGDEVFLI 54 (57)
T ss_pred EEcCcccCCccccCCCCEEEEE
Confidence 4445555556667888887765
No 153
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=22.90 E-value=74 Score=17.39 Aligned_cols=17 Identities=24% Similarity=0.614 Sum_probs=12.7
Q ss_pred hhCCCCCCCEEEEECCE
Q psy3490 51 RCGQLNIGDQIIAVNGV 67 (88)
Q Consensus 51 ~~g~l~~gd~i~~Vng~ 67 (88)
....|++||.+....|.
T Consensus 34 m~~~L~~Gd~VvT~gGi 50 (84)
T TIGR00739 34 LIESLKKGDKVLTIGGI 50 (84)
T ss_pred HHHhCCCCCEEEECCCe
Confidence 33459999999877765
No 154
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=22.54 E-value=1.2e+02 Score=22.37 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=26.5
Q ss_pred CCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 57 IGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 57 ~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.|-+|+-|+..-+++.|..+++++||+++
T Consensus 376 ~gkrVlLVDDvIttGtTl~~~~~~Lr~aG 404 (500)
T PRK07349 376 AGKRIIIVDDSIVRGTTSRKIVKALRDAG 404 (500)
T ss_pred CCCEEEEEeceeCCcHHHHHHHHHHHHhC
Confidence 57889999999999999999999999765
No 155
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=22.45 E-value=44 Score=18.57 Aligned_cols=12 Identities=50% Similarity=0.745 Sum_probs=9.4
Q ss_pred hCCCCCCCEEEE
Q psy3490 52 CGQLNIGDQIIA 63 (88)
Q Consensus 52 ~g~l~~gd~i~~ 63 (88)
.|.|+.||.|..
T Consensus 24 ~GtL~~Gd~iv~ 35 (95)
T cd03701 24 NGTLKKGDVIVA 35 (95)
T ss_pred cCeEecCCEEEE
Confidence 467999998874
No 156
>PF01331 mRNA_cap_enzyme: mRNA capping enzyme, catalytic domain; InterPro: IPR001339 The mRNA capping enzyme in yeasts is composed of two separate chains, alpha a mRNA guanyltransferase and beta an RNA 5'-triphosphate. X-ray crystallography reveals a large conformational change during guanyl transfer by mRNA capping enzymes []. Binding of the enzyme to nucleotides is specific to the GMP moiety of GTP. The viral mRNA capping enzyme is a monomer that transfers a GMP cap onto the end of mRNA that terminates with a 5'-diphosphate tail.; GO: 0004484 mRNA guanylyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 3RTX_A 3KYH_D 3S24_G 1CKN_B 1CKO_A 1CKM_B 1P16_B.
Probab=22.34 E-value=1.7e+02 Score=18.12 Aligned_cols=42 Identities=21% Similarity=0.374 Sum_probs=26.9
Q ss_pred EEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 38 i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
-.|....++ ...-+...=|. +.+||.++...+..+-...+++
T Consensus 75 ElV~d~~~~---~~~~~flifD~-l~~~G~~v~~~~~~~Rl~~l~~ 116 (192)
T PF01331_consen 75 ELVLDKDPG---EKKPRFLIFDI-LAINGQNVTDKPLDERLAYLQE 116 (192)
T ss_dssp EEEEEECTT---CEEEEEEEEEE-EEETTEEGCCSBHHHHHHHHHH
T ss_pred EEEcccCCC---CCceEEEEEee-ehhCCcEeccCCHHHHHHHHHH
Confidence 345555554 22223444554 4579999999999988877764
No 157
>PRK00234 Maf-like protein; Reviewed
Probab=22.27 E-value=2.2e+02 Score=18.03 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=22.4
Q ss_pred CCCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 55 LNIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
+-..|+++..+|.-+..- +.++|.++|+.
T Consensus 65 vI~aDTvV~~~g~Il~KP~~~~eA~~mL~~ 94 (192)
T PRK00234 65 IIGSDQVAVLGGQILGKPHTFERAREQLLA 94 (192)
T ss_pred EEEeCeEEEeCCEECCCCCCHHHHHHHHHH
Confidence 334699999999877544 88899998874
No 158
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=21.96 E-value=72 Score=18.30 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=13.4
Q ss_pred hhhCCCCCCCEEEEECCE
Q psy3490 50 ARCGQLNIGDQIIAVNGV 67 (88)
Q Consensus 50 ~~~g~l~~gd~i~~Vng~ 67 (88)
+....|++||++..+.|.
T Consensus 48 ~~~~~Lk~Gd~VvT~gGi 65 (106)
T PRK05585 48 KMLSSLAKGDEVVTNGGI 65 (106)
T ss_pred HHHHhcCCCCEEEECCCe
Confidence 444559999999877765
No 159
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=21.92 E-value=96 Score=18.67 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=22.9
Q ss_pred EEEEECCCChhhhhCCCCCCCEEEEECCEEC
Q psy3490 39 VIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69 (88)
Q Consensus 39 ~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~ 69 (88)
-+..+-.+.++..+. -+.|++|+.++|=++
T Consensus 49 C~agvg~gv~~l~~~-arsgrrIlalDGCp~ 78 (135)
T COG4273 49 CTAGVGAGVPALVDA-ARSGRRILALDGCPL 78 (135)
T ss_pred eeecccCCcHHHHHH-hhcCCceEEecCChH
Confidence 345677778887765 789999999998654
No 160
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=21.30 E-value=95 Score=17.60 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=13.8
Q ss_pred EEEEEECCCChhhhhCCCCCCCEEE
Q psy3490 38 VVIANLAPAGAAARCGQLNIGDQII 62 (88)
Q Consensus 38 i~I~~v~~g~~a~~~g~l~~gd~i~ 62 (88)
-||-++.+|..+. .+ |++||++.
T Consensus 83 ~~vLE~~aG~~~~-~~-i~~Gd~v~ 105 (108)
T PF02643_consen 83 RYVLELPAGWFEK-LG-IKVGDRVR 105 (108)
T ss_dssp CEEEEEETTHHHH-HT---TT-EEE
T ss_pred CEEEEcCCCchhh-cC-CCCCCEEE
Confidence 4788887775554 35 99999874
No 161
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=20.93 E-value=1.2e+02 Score=22.25 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=26.2
Q ss_pred CCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 57 IGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 57 ~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.|-.|+-|+..-+++.|..+++++||+++
T Consensus 357 ~gK~VlLVDDvitTGaTl~~~~~~L~~aG 385 (501)
T PRK09246 357 KGKNVLLVDDSIVRGTTSEQIVQMAREAG 385 (501)
T ss_pred cCCeEEEEeccccccHHHHHHHHHHHHcC
Confidence 47789999999999999999999999764
No 162
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=20.54 E-value=1e+02 Score=16.38 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=11.9
Q ss_pred hhhhCCCCCCCEEEEE
Q psy3490 49 AARCGQLNIGDQIIAV 64 (88)
Q Consensus 49 a~~~g~l~~gd~i~~V 64 (88)
+.+.+++++||.++-+
T Consensus 60 ~~~~g~~~~Gd~vl~~ 75 (90)
T PF08541_consen 60 ALEEGRIKPGDRVLLV 75 (90)
T ss_dssp HHHTTSSCTTEEEEEE
T ss_pred HHHcCCCCCCCEEEEE
Confidence 3445679999998765
No 163
>KOG3686|consensus
Probab=20.50 E-value=1.9e+02 Score=22.61 Aligned_cols=64 Identities=14% Similarity=0.066 Sum_probs=45.3
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
++.+..+.+.+.+||.+. .. ..+..+....-|..++ + |-++..++...+...+++.+..+++-+
T Consensus 594 ~~~~~~r~~~~~~~fhv~--~e------~~~~~~e~~~~~~~a~-l--g~~~~~~~~~~~~Tla~~~~~~l~~~s 657 (740)
T KOG3686|consen 594 ETRALYRADAEAVGFHVS--TE------GNGDVQEKWKHAGNAE-L--GSRENTRKKYTRETLATKFCDVLLVLS 657 (740)
T ss_pred eeeeecccccccccceec--cc------ccceeecccccccccc-c--cceeeeehhhhhhhhhhhhhhhhhhhh
Confidence 445555555557888873 11 2455566667777777 4 999999999999988899888887644
No 164
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=20.15 E-value=64 Score=18.76 Aligned_cols=12 Identities=42% Similarity=0.653 Sum_probs=9.8
Q ss_pred hCCCCCCCEEEE
Q psy3490 52 CGQLNIGDQIIA 63 (88)
Q Consensus 52 ~g~l~~gd~i~~ 63 (88)
+|.|+.||.|..
T Consensus 24 ~GtL~~GD~Iv~ 35 (110)
T cd03703 24 DGTLREGDTIVV 35 (110)
T ss_pred CCeEecCCEEEE
Confidence 467999999974
Done!