Query psy3490
Match_columns 88
No_of_seqs 122 out of 1014
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 18:03:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gge_A PDZ domain-containing p 99.8 1.6E-19 5.4E-24 101.4 10.9 73 8-85 5-77 (95)
2 3b76_A E3 ubiquitin-protein li 99.8 5.4E-18 1.8E-22 98.5 10.6 84 2-85 18-102 (118)
3 1wi4_A Synip, syntaxin binding 99.8 7.2E-18 2.5E-22 96.7 10.6 81 3-85 10-90 (109)
4 1r6j_A Syntenin 1; PDZ, membra 99.8 1E-17 3.4E-22 91.9 10.3 67 9-85 5-71 (82)
5 2yt7_A Amyloid beta A4 precurs 99.8 2.7E-17 9.4E-22 92.9 11.6 82 3-84 4-85 (101)
6 2byg_A Channel associated prot 99.7 8.1E-17 2.8E-21 93.3 11.2 82 2-85 18-103 (117)
7 3cbz_A Dishevelled-2; PDZ doma 99.7 6.5E-17 2.2E-21 92.4 8.7 75 10-84 7-81 (108)
8 1kwa_A Hcask/LIN-2 protein; PD 99.7 2.1E-16 7.2E-21 87.4 9.9 73 9-85 2-74 (88)
9 3o46_A Maguk P55 subfamily mem 99.7 5.3E-16 1.8E-20 86.3 11.5 75 7-85 3-77 (93)
10 2iwo_A Multiple PDZ domain pro 99.7 1.3E-16 4.5E-21 92.8 8.7 80 5-85 21-102 (120)
11 1ufx_A KIAA1526 protein; PDZ d 99.7 1.5E-16 5.1E-21 90.4 8.8 74 9-84 7-80 (103)
12 1x6d_A Interleukin-16; PDZ dom 99.7 4E-16 1.4E-20 90.3 10.1 77 8-85 15-91 (119)
13 2dc2_A GOPC, golgi associated 99.7 3.5E-16 1.2E-20 88.7 8.9 77 7-85 8-84 (103)
14 3hpk_A Protein interacting wit 99.7 1.2E-15 4.1E-20 89.0 11.2 74 10-85 21-94 (125)
15 1i16_A Interleukin 16, LCF; cy 99.7 2.7E-16 9.2E-21 92.5 8.0 76 8-85 29-106 (130)
16 1v62_A KIAA1719 protein; struc 99.7 1.2E-15 4E-20 88.3 10.4 75 9-84 16-90 (117)
17 2jik_A Synaptojanin-2 binding 99.7 2.6E-15 9E-20 84.5 11.5 77 7-85 6-86 (101)
18 2awx_A Synapse associated prot 99.7 2.5E-15 8.5E-20 85.2 11.1 77 7-85 2-82 (105)
19 3egg_C Spinophilin; PP1, serin 99.7 1.5E-15 5E-20 93.2 10.3 73 12-85 84-160 (170)
20 4e34_A Golgi-associated PDZ an 99.7 1.2E-15 4.1E-20 83.7 8.9 74 10-85 4-77 (87)
21 2ejy_A 55 kDa erythrocyte memb 99.7 1.9E-15 6.5E-20 85.1 9.8 72 9-84 13-84 (97)
22 1nf3_C PAR-6B; semi-CRIB motif 99.7 1E-15 3.4E-20 89.8 9.0 82 4-85 25-114 (128)
23 3axa_A Afadin, nectin-3, prote 99.7 2.7E-15 9.2E-20 85.2 10.4 78 8-85 9-87 (106)
24 2qg1_A Multiple PDZ domain pro 99.7 4.5E-15 1.5E-19 82.2 11.1 73 10-85 6-78 (92)
25 1ujd_A KIAA0559 protein; PDZ d 99.7 1.8E-15 6.2E-20 87.5 9.7 78 8-85 12-98 (117)
26 2koj_A Partitioning defective 99.6 4.6E-15 1.6E-19 84.8 11.3 82 3-84 4-87 (111)
27 2d92_A INAD-like protein; PDZ 99.6 3E-15 1E-19 85.4 10.4 75 9-84 16-92 (108)
28 2ehr_A INAD-like protein; PDZ 99.6 2.6E-15 9E-20 86.6 10.2 77 8-85 15-99 (117)
29 4amh_A Disks large homolog 1; 99.6 2.3E-15 8E-20 85.7 9.8 71 14-85 7-81 (106)
30 2gzv_A PRKCA-binding protein; 99.6 5E-15 1.7E-19 85.4 11.3 81 3-85 19-99 (114)
31 1uju_A Scribble; PDZ domain, c 99.6 4.9E-16 1.7E-20 89.0 7.0 80 6-85 7-93 (111)
32 2ego_A General receptor for ph 99.6 4.5E-15 1.5E-19 83.0 10.8 76 9-85 5-85 (96)
33 1g9o_A NHE-RF; PDZ domain, com 99.6 5E-15 1.7E-19 81.9 10.8 72 9-85 4-75 (91)
34 2jre_A C60-1 PDZ domain peptid 99.6 4.9E-15 1.7E-19 84.3 11.0 81 3-83 5-91 (108)
35 1qav_A Alpha-1 syntrophin (res 99.6 1.9E-15 6.4E-20 83.5 9.0 75 9-85 5-79 (90)
36 3l4f_D SH3 and multiple ankyri 99.6 3.1E-15 1.1E-19 88.3 10.3 75 10-85 29-113 (132)
37 1wha_A KIAA0147 protein, scrib 99.6 2.9E-15 9.9E-20 85.0 9.7 72 12-84 9-86 (105)
38 2q9v_A Membrane-associated gua 99.6 5.4E-15 1.9E-19 81.6 10.6 72 10-84 4-75 (90)
39 2fne_A Multiple PDZ domain pro 99.6 1.6E-15 5.4E-20 87.9 8.6 76 8-85 25-102 (117)
40 2r4h_A Membrane-associated gua 99.6 4.9E-15 1.7E-19 85.0 10.6 80 3-85 19-98 (112)
41 2db5_A INAD-like protein; PDZ 99.6 2.1E-15 7E-20 88.3 9.1 78 8-85 25-104 (128)
42 1ihj_A INAD; intermolecular di 99.6 4E-15 1.4E-19 83.2 9.9 78 8-85 5-86 (98)
43 2daz_A INAD-like protein; PDZ 99.6 4.4E-15 1.5E-19 86.5 10.5 74 10-85 27-100 (124)
44 2fe5_A Presynaptic protein SAP 99.6 1.4E-14 4.8E-19 80.4 12.0 76 8-85 3-82 (94)
45 1wg6_A Hypothetical protein (r 99.6 7E-16 2.4E-20 90.5 6.9 82 3-84 16-103 (127)
46 2opg_A Multiple PDZ domain pro 99.6 8.5E-15 2.9E-19 81.9 11.0 74 10-85 6-79 (98)
47 2i1n_A Discs, large homolog 3; 99.6 1.2E-14 4.1E-19 81.9 11.6 75 9-85 5-83 (102)
48 2e7k_A Maguk P55 subfamily mem 99.6 3.6E-15 1.2E-19 82.8 9.2 74 6-85 4-77 (91)
49 1uhp_A Hypothetical protein KI 99.6 1.6E-14 5.4E-19 82.1 12.0 74 10-85 10-90 (107)
50 1wi2_A Riken cDNA 2700099C19; 99.6 8.8E-15 3E-19 82.9 10.9 73 9-84 16-88 (104)
51 1uep_A Membrane associated gua 99.6 3.6E-15 1.2E-19 84.4 9.2 70 12-84 13-82 (103)
52 2jil_A GRIP1 protein, glutamat 99.6 5.7E-15 1.9E-19 82.5 9.8 73 11-84 6-80 (97)
53 1v6b_A Harmonin isoform A1; st 99.6 3.5E-15 1.2E-19 86.4 9.2 73 9-84 19-91 (118)
54 2vwr_A Ligand of NUMB protein 99.6 1.1E-14 3.8E-19 81.1 10.9 73 10-85 5-78 (95)
55 1d5g_A Human phosphatase HPTP1 99.6 2.3E-14 8E-19 79.8 12.2 77 7-85 4-82 (96)
56 1wf8_A Neurabin-I; PDZ domain, 99.6 7.7E-15 2.6E-19 83.4 10.3 79 7-85 6-89 (107)
57 1wfg_A Regulating synaptic mem 99.6 7.9E-16 2.7E-20 90.7 6.2 67 18-84 46-113 (131)
58 2eno_A Synaptojanin-2-binding 99.6 1E-14 3.5E-19 84.5 10.9 75 8-84 17-95 (120)
59 1m5z_A GRIP, AMPA receptor int 99.6 3.2E-14 1.1E-18 78.6 12.0 76 5-84 3-79 (91)
60 2i04_A Membrane-associated gua 99.6 8.7E-15 3E-19 80.0 9.5 70 12-84 4-73 (85)
61 1ueq_A Membrane associated gua 99.6 1.7E-14 5.9E-19 84.0 11.2 70 12-84 23-92 (123)
62 1q3o_A Shank1; PDZ, GKAP, pept 99.6 2.4E-14 8.3E-19 81.6 11.6 75 10-85 9-93 (109)
63 3e17_A Tight junction protein 99.6 1.7E-14 5.9E-19 79.6 10.5 65 13-85 5-70 (88)
64 2he4_A Na(+)/H(+) exchange reg 99.6 4.3E-14 1.5E-18 78.0 11.8 71 9-84 5-75 (90)
65 2iwq_A Multiple PDZ domain pro 99.6 2.8E-14 9.5E-19 83.2 11.5 76 10-85 26-108 (123)
66 2pa1_A PDZ and LIM domain prot 99.6 8.8E-15 3E-19 80.3 8.9 72 11-85 3-74 (87)
67 1va8_A Maguk P55 subfamily mem 99.6 2.7E-14 9.1E-19 82.0 11.2 74 7-85 24-97 (113)
68 3nfk_A Tyrosine-protein phosph 99.6 5.5E-15 1.9E-19 83.9 8.3 76 8-85 17-93 (107)
69 2qkv_A Inactivation-NO-after-p 99.6 7.7E-15 2.6E-19 82.1 8.7 76 5-85 3-80 (96)
70 3i4w_A Disks large homolog 4; 99.6 3.7E-14 1.3E-18 80.0 11.5 74 8-85 11-84 (104)
71 2kom_A Partitioning defective 99.6 4.3E-14 1.5E-18 82.1 12.0 82 3-84 23-106 (121)
72 1mfg_A ERB-B2 interacting prot 99.6 1.9E-14 6.5E-19 80.1 10.1 72 12-85 5-82 (95)
73 2o2t_A Multiple PDZ domain pro 99.6 1.1E-14 3.6E-19 84.0 9.2 78 8-85 20-99 (117)
74 2dm8_A INAD-like protein; PDZ 99.6 7.7E-15 2.6E-19 84.4 8.5 81 3-85 12-92 (116)
75 2g5m_B Neurabin-2; spinophilin 99.6 2.4E-14 8.3E-19 82.0 10.5 75 11-85 5-84 (113)
76 1um1_A KIAA1849 protein, RSGI 99.6 3.3E-14 1.1E-18 81.1 11.0 75 10-85 10-85 (110)
77 3qe1_A Sorting nexin-27, G pro 99.6 5.8E-14 2E-18 79.7 11.9 75 9-85 7-91 (107)
78 2dkr_A LIN-7 homolog B; LIN-7B 99.6 3.6E-14 1.2E-18 78.6 10.6 73 10-85 7-79 (93)
79 2q3g_A PDZ and LIM domain prot 99.6 7.8E-15 2.7E-19 80.8 7.9 73 10-85 3-75 (89)
80 3kzd_A TIAM-1, T-lymphoma inva 99.6 1.9E-14 6.6E-19 80.6 9.5 72 10-83 8-81 (94)
81 2la8_A Inactivation-NO-after-p 99.6 1.3E-14 4.5E-19 82.7 8.7 71 10-85 4-74 (106)
82 1rgw_A ZAsp protein; PDZ, cyph 99.6 2E-14 6.8E-19 78.5 9.0 69 14-85 5-73 (85)
83 1n7e_A AMPA receptor interacti 99.6 4.5E-14 1.5E-18 78.9 10.4 72 10-84 7-78 (97)
84 3r68_A Na(+)/H(+) exchange reg 99.6 3.3E-14 1.1E-18 79.0 9.8 74 7-85 4-77 (95)
85 2fcf_A Multiple PDZ domain pro 99.6 5.8E-14 2E-18 79.1 10.9 75 10-85 6-88 (103)
86 2z17_A Pleckstrin homology SEC 99.6 5.5E-14 1.9E-18 79.5 10.8 75 10-85 17-96 (104)
87 3r0h_A INAD, inactivation-NO-a 99.6 7.6E-14 2.6E-18 86.8 12.4 81 3-85 13-96 (206)
88 3ngh_A PDZ domain-containing p 99.6 2.9E-14 9.8E-19 80.8 9.5 72 10-85 3-74 (106)
89 2uzc_A Human pdlim5, PDZ and L 99.6 2.2E-14 7.6E-19 78.8 8.6 69 13-84 6-74 (88)
90 2v90_A PDZ domain-containing p 99.6 5E-14 1.7E-18 78.6 10.0 74 9-84 4-77 (96)
91 2djt_A Unnamed protein product 99.6 1.9E-14 6.4E-19 81.4 8.2 73 10-84 13-86 (104)
92 2csj_A TJP2 protein; PDZ domai 99.6 2.8E-14 9.6E-19 82.3 9.0 73 10-85 16-93 (117)
93 2dmz_A INAD-like protein; PDZ 99.6 3.8E-14 1.3E-18 82.9 9.6 79 6-84 11-94 (129)
94 1wfv_A Membrane associated gua 99.6 2E-15 6.9E-20 85.1 3.9 80 3-84 4-84 (103)
95 1n7t_A 99-MER peptide of densi 99.6 1.7E-14 6E-19 81.4 7.7 72 12-85 13-90 (103)
96 1z87_A Alpha-1-syntrophin; pro 99.6 9.3E-15 3.2E-19 94.9 7.4 74 10-85 79-152 (263)
97 2kpk_A Membrane-associated gua 99.6 2.1E-14 7.1E-19 84.3 8.2 70 12-84 22-91 (129)
98 1uew_A Membrane associated gua 99.6 7.2E-14 2.5E-18 80.2 10.4 75 9-84 11-91 (114)
99 1uez_A KIAA1526 protein; PDZ d 99.6 3.2E-14 1.1E-18 80.1 8.4 78 5-85 5-83 (101)
100 2cs5_A Tyrosine-protein phosph 99.6 1.5E-14 5.2E-19 83.6 7.2 73 10-84 17-90 (119)
101 2edp_A Fragment, shroom family 99.6 1.6E-14 5.5E-19 81.3 7.0 79 4-85 5-83 (100)
102 3gsl_A Disks large homolog 4; 99.6 1.6E-13 5.3E-18 84.4 12.0 77 7-85 4-84 (196)
103 3suz_A Amyloid beta A4 precurs 99.5 3.6E-15 1.2E-19 101.2 4.8 82 3-84 199-280 (388)
104 1v5q_A GRIP1 homolog, glutamat 99.5 1.2E-13 4.1E-18 80.3 10.5 75 10-84 17-93 (122)
105 1q7x_A PDZ2B domain of PTP-BAS 99.5 6E-14 2E-18 79.8 9.0 78 7-85 8-91 (108)
106 2vsp_A PDZ domain-containing p 99.5 1.9E-14 6.5E-19 79.6 6.8 70 10-84 5-74 (91)
107 3sfj_A TAX1-binding protein 3; 99.5 1.7E-13 5.7E-18 77.3 10.4 63 21-84 20-92 (104)
108 2jxo_A Ezrin-radixin-moesin-bi 99.5 3.5E-13 1.2E-17 75.3 11.6 70 10-84 11-80 (98)
109 2h2b_A Tight junction protein 99.5 2.6E-13 8.9E-18 76.9 10.9 73 10-84 9-85 (107)
110 2eeh_A PDZ domain-containing p 99.5 1.6E-13 5.6E-18 77.0 9.8 72 10-84 12-83 (100)
111 2iwn_A Multiple PDZ domain pro 99.5 2.7E-13 9.4E-18 75.3 10.6 74 11-84 5-81 (97)
112 2pkt_A PDZ and LIM domain prot 99.5 1.2E-13 4E-18 76.3 8.6 68 14-84 7-74 (91)
113 2f5y_A Regulator of G-protein 99.5 2.9E-13 1E-17 74.8 10.2 69 9-85 4-72 (91)
114 2w4f_A Protein LAP4; structura 99.5 3.4E-13 1.2E-17 75.1 10.5 71 12-84 7-81 (97)
115 1x5q_A LAP4 protein; PDZ domai 99.5 8E-13 2.7E-17 75.3 12.0 65 19-84 25-93 (110)
116 2dlu_A INAD-like protein; PDZ 99.5 2.8E-13 9.5E-18 77.3 9.7 71 9-84 16-86 (111)
117 3k1r_A Harmonin; protein-prote 99.5 1.2E-13 4.2E-18 85.7 8.8 73 8-83 84-156 (192)
118 2eeg_A PDZ and LIM domain prot 99.5 1.7E-13 5.8E-18 76.2 8.4 65 17-84 15-79 (94)
119 1tp5_A Presynaptic density pro 99.5 5.3E-13 1.8E-17 77.0 10.8 74 8-85 14-87 (119)
120 1y7n_A Amyloid beta A4 precurs 99.5 6.9E-13 2.4E-17 73.5 10.6 66 10-85 13-79 (90)
121 2d8i_A T-cell lymphoma invasio 99.5 5E-14 1.7E-18 81.3 6.1 79 3-83 10-90 (114)
122 2eei_A PDZ domain-containing p 99.5 1.1E-13 3.8E-18 78.4 7.4 71 9-84 9-79 (106)
123 1wf7_A Enigma homologue protei 99.5 5.3E-14 1.8E-18 79.4 5.8 69 14-85 9-77 (103)
124 2d90_A PDZ domain containing p 99.5 2.5E-13 8.6E-18 76.5 8.5 71 9-84 7-77 (102)
125 2qt5_A Glutamate receptor-inte 99.5 8.8E-13 3E-17 81.9 11.5 74 10-85 9-82 (200)
126 1vb7_A PDZ and LIM domain 2; P 99.5 7.1E-14 2.4E-18 77.7 5.7 70 12-84 8-77 (94)
127 2lob_A Golgi-associated PDZ an 99.2 3.1E-15 1.1E-19 86.1 0.0 74 10-85 29-102 (112)
128 2kv8_A RGS12, regulator of G-p 99.5 8.2E-14 2.8E-18 75.8 5.7 68 10-85 4-71 (83)
129 1x5n_A Harmonin; PDZ domain, u 99.5 4.9E-13 1.7E-17 76.6 9.1 73 10-85 17-89 (114)
130 1whd_A RGS3, regulator of G-pr 99.5 1.6E-13 5.4E-18 77.2 6.8 74 5-85 10-84 (100)
131 3khf_A Microtubule-associated 99.5 3.2E-13 1.1E-17 75.6 7.9 72 12-85 6-82 (99)
132 3soe_A Membrane-associated gua 99.5 6.6E-13 2.3E-17 76.6 9.0 67 10-85 14-80 (113)
133 1qau_A Neuronal nitric oxide s 99.5 1.6E-12 5.4E-17 74.2 10.5 72 10-84 3-74 (112)
134 2qbw_A PDZ-fibronectin fusion 99.5 7.2E-13 2.5E-17 81.9 9.5 64 20-85 2-71 (195)
135 2vsv_A Rhophilin-2; scaffold p 99.5 8.8E-13 3E-17 75.6 9.1 68 10-85 25-92 (109)
136 2edz_A PDZ domain-containing p 99.4 9.7E-13 3.3E-17 75.5 9.0 71 10-84 15-85 (114)
137 2vz5_A TAX1-binding protein 3; 99.4 1.2E-12 4.1E-17 77.7 9.5 73 10-83 25-110 (139)
138 2kjd_A Sodium/hydrogen exchang 99.4 3.2E-12 1.1E-16 74.5 11.2 71 9-84 10-80 (128)
139 1p1d_A PDZ45, glutamate recept 99.4 1.6E-12 5.5E-17 80.6 10.5 75 10-84 8-84 (196)
140 2dls_A PDZ-rhogef, RHO guanine 99.4 1.4E-12 4.8E-17 72.4 8.8 66 10-83 10-75 (93)
141 2xkx_A Disks large homolog 4; 99.4 1.4E-12 4.8E-17 94.1 10.7 74 10-85 61-138 (721)
142 1uf1_A KIAA1526 protein; PDZ d 99.4 4.4E-12 1.5E-16 74.0 10.8 73 10-85 22-94 (128)
143 3gsl_A Disks large homolog 4; 99.4 3.1E-12 1.1E-16 78.6 10.5 66 20-85 111-179 (196)
144 1um7_A Synapse-associated prot 99.4 6.8E-13 2.3E-17 75.7 6.7 72 10-85 17-88 (113)
145 1wif_A RSGI RUH-020, riken cDN 99.4 3.5E-13 1.2E-17 79.0 5.5 61 19-84 37-97 (126)
146 1b8q_A Protein (neuronal nitri 99.4 7.3E-13 2.5E-17 77.2 6.6 77 5-84 5-81 (127)
147 3tsv_A Tight junction protein 99.4 5.8E-12 2E-16 73.4 9.9 62 17-83 36-97 (124)
148 3bpu_A Membrane-associated gua 99.4 2.8E-12 9.5E-17 70.3 8.0 67 10-83 5-71 (88)
149 3r0h_A INAD, inactivation-NO-a 99.4 4.4E-12 1.5E-16 78.8 9.5 67 14-85 119-185 (206)
150 1ujv_A Membrane associated gua 99.4 6.4E-12 2.2E-16 70.2 9.0 66 11-84 11-77 (96)
151 2eaq_A LIM domain only protein 99.4 1.3E-11 4.5E-16 67.8 10.1 66 12-83 7-74 (90)
152 2yuy_A RHO GTPase activating p 99.4 6.2E-13 2.1E-17 77.6 4.5 73 10-84 10-108 (126)
153 2rcz_A Tight junction protein 99.4 1.9E-11 6.6E-16 65.6 10.1 64 14-85 7-70 (81)
154 3tsz_A Tight junction protein 99.4 7.3E-12 2.5E-16 85.1 10.0 72 5-83 6-77 (391)
155 1v5l_A PDZ and LIM domain 3; a 99.4 2.3E-13 8E-18 76.8 2.2 65 17-84 12-76 (103)
156 3cyy_A Tight junction protein 99.3 2.7E-11 9.2E-16 66.7 10.4 59 19-85 14-72 (92)
157 1uit_A Human discs large 5 pro 99.3 2.7E-11 9.2E-16 69.6 10.6 69 10-84 21-89 (117)
158 3shw_A Tight junction protein 99.3 1.2E-11 4.1E-16 85.7 10.4 67 10-83 3-69 (468)
159 2edv_A FERM and PDZ domain-con 99.3 1.3E-12 4.6E-17 72.9 4.4 67 10-84 10-77 (96)
160 1w9e_A Syntenin 1; cell adhesi 99.3 2.9E-11 9.8E-16 73.2 10.6 70 9-84 5-74 (166)
161 3qik_A Phosphatidylinositol 3, 99.3 2E-11 6.7E-16 69.0 8.7 61 17-83 25-85 (101)
162 1wh1_A KIAA1095 protein; PDZ d 99.3 1.7E-11 5.8E-16 71.3 8.3 73 10-84 21-94 (124)
163 1vae_A Rhophilin 2, rhophilin, 99.3 3.1E-12 1E-16 73.4 4.8 68 10-85 17-84 (111)
164 2qt5_A Glutamate receptor-inte 99.2 1.3E-10 4.5E-15 72.0 10.6 66 19-84 116-183 (200)
165 2krg_A Na(+)/H(+) exchange reg 99.2 2.5E-11 8.6E-16 76.8 7.1 70 10-84 11-80 (216)
166 1p1d_A PDZ45, glutamate recept 99.2 1E-10 3.4E-15 72.4 9.4 74 11-84 110-183 (196)
167 2xkx_A Disks large homolog 4; 99.2 2.1E-10 7.2E-15 82.8 10.4 72 10-85 309-380 (721)
168 2yub_A LIMK-2, LIM domain kina 99.2 1.5E-10 5.3E-15 66.9 7.5 74 10-84 17-93 (118)
169 1w9e_A Syntenin 1; cell adhesi 98.8 8.7E-08 3E-12 57.8 10.4 66 10-85 90-155 (166)
170 3suz_A Amyloid beta A4 precurs 98.8 7.2E-10 2.5E-14 75.2 -0.1 55 21-85 309-363 (388)
171 1fc6_A Photosystem II D1 prote 98.7 6.2E-08 2.1E-12 65.5 8.2 60 21-83 86-145 (388)
172 2pzd_A Serine protease HTRA2; 98.7 8.4E-08 2.9E-12 54.5 7.3 45 36-83 35-79 (113)
173 3i18_A LMO2051 protein; alpha- 98.6 1.7E-07 5.9E-12 52.3 6.9 45 35-83 6-50 (100)
174 3id1_A Regulator of sigma E pr 98.6 1.6E-07 5.4E-12 52.1 6.7 42 39-83 5-46 (95)
175 2p3w_A Probable serine proteas 98.6 3E-07 1E-11 52.1 7.1 44 36-82 35-78 (112)
176 2kl1_A YLBL protein; structure 98.6 8.6E-08 2.9E-12 53.0 4.3 45 36-84 5-49 (94)
177 2kjp_A Uncharacterized protein 98.6 1.8E-08 6.3E-13 55.6 1.5 44 37-84 2-45 (91)
178 2zpm_A Regulator of sigma E pr 98.5 1.6E-07 5.6E-12 51.2 5.2 43 38-83 6-48 (91)
179 2l97_A HTRA, putative serine p 98.5 3.6E-07 1.2E-11 53.5 6.9 45 36-84 57-101 (134)
180 3rle_A Golgi reassembly-stacki 98.5 3.8E-07 1.3E-11 57.0 6.9 38 36-74 16-54 (209)
181 2i6v_A General secretion pathw 98.5 2.7E-07 9.2E-12 50.2 5.4 43 37-82 20-62 (87)
182 1y8t_A Hypothetical protein RV 98.4 1.9E-06 6.6E-11 56.8 8.1 57 21-83 230-286 (324)
183 3k50_A Putative S41 protease; 98.4 1E-06 3.5E-11 60.2 6.4 51 21-73 75-126 (403)
184 2hga_A Conserved protein MTH13 98.3 3E-06 1E-10 49.2 7.4 44 36-83 25-68 (125)
185 3stj_A Protease DEGQ; serine p 98.3 1.9E-06 6.6E-11 57.6 6.8 45 36-83 263-307 (345)
186 2i4s_A General secretion pathw 98.3 1.4E-06 4.6E-11 49.0 5.0 43 37-82 38-80 (105)
187 4a8c_A Periplasmic PH-dependen 98.3 2.4E-06 8.2E-11 58.6 7.1 46 36-84 363-408 (436)
188 1te0_A Protease DEGS; two doma 98.3 2.4E-06 8.3E-11 56.3 6.7 45 36-83 244-288 (318)
189 1lcy_A HTRA2 serine protease; 98.3 2.9E-06 9.8E-11 56.2 6.9 45 36-83 256-300 (325)
190 4fgm_A Aminopeptidase N family 98.2 3.8E-06 1.3E-10 59.8 7.4 52 20-77 485-536 (597)
191 3pv2_A DEGQ; trypsin fold, PDZ 98.2 3.4E-06 1.1E-10 58.2 6.7 45 37-84 387-431 (451)
192 3rle_A Golgi reassembly-stacki 98.2 2.2E-06 7.5E-11 53.5 4.9 59 21-83 96-156 (209)
193 3pv2_A DEGQ; trypsin fold, PDZ 98.2 6.8E-06 2.3E-10 56.7 7.4 45 36-83 282-326 (451)
194 4a8c_A Periplasmic PH-dependen 98.1 6.7E-06 2.3E-10 56.4 6.9 44 36-82 263-306 (436)
195 3qo6_A Protease DO-like 1, chl 98.0 8E-06 2.7E-10 54.5 4.8 45 36-83 251-306 (348)
196 3num_A Serine protease HTRA1; 97.8 2.4E-06 8.1E-11 56.7 0.0 44 36-82 254-297 (332)
197 1k32_A Tricorn protease; prote 97.7 8.6E-05 2.9E-09 54.9 6.7 56 21-84 738-802 (1045)
198 1ky9_A Protease DO, DEGP, HTRA 97.7 5.1E-06 1.7E-10 57.3 0.0 45 36-83 383-427 (448)
199 1ky9_A Protease DO, DEGP, HTRA 97.5 2E-05 6.8E-10 54.3 0.9 44 36-82 286-329 (448)
200 4fln_A Protease DO-like 2, chl 97.4 0.00061 2.1E-08 48.2 6.9 48 36-86 415-462 (539)
201 4fln_A Protease DO-like 2, chl 97.2 0.00059 2E-08 48.2 5.2 34 36-71 277-310 (539)
202 3dor_A Protein CT_858, CPAF; m 63.7 9.7 0.00033 27.4 4.1 28 38-70 98-125 (583)
203 3bbo_O Ribosomal protein L16; 51.9 9.7 0.00033 22.1 2.2 32 47-83 89-120 (135)
204 2j3t_D Trafficking protein par 47.8 6.9 0.00024 24.6 1.2 23 49-72 52-74 (219)
205 2ftc_I Mitochondrial ribosomal 47.1 8.5 0.00029 21.7 1.4 29 52-84 81-109 (118)
206 3m3h_A OPRT, oprtase, orotate 37.3 29 0.001 21.7 2.9 33 53-85 132-164 (234)
207 3dez_A OPRT, oprtase, orotate 35.2 33 0.0011 21.6 2.9 33 53-85 144-176 (243)
208 2wns_A Orotate phosphoribosylt 33.9 28 0.00097 21.0 2.4 33 53-85 106-138 (205)
209 2dy0_A APRT, adenine phosphori 33.6 34 0.0012 20.3 2.7 31 55-85 123-153 (190)
210 1ffk_F Ribosomal protein L10E; 33.5 9.3 0.00032 22.8 0.1 27 53-84 113-139 (157)
211 3r8s_M 50S ribosomal protein L 32.3 7.4 0.00025 22.6 -0.5 26 54-84 95-120 (136)
212 1vch_A Phosphoribosyltransfera 31.9 32 0.0011 19.9 2.3 29 57-85 119-147 (175)
213 1y0b_A Xanthine phosphoribosyl 30.6 41 0.0014 19.9 2.7 31 55-85 117-147 (197)
214 1g2q_A Adenine phosphoribosylt 30.0 41 0.0014 19.8 2.6 31 55-85 119-149 (187)
215 1qb7_A APRT, adenine phosphori 29.8 45 0.0015 20.7 2.8 31 55-85 135-165 (236)
216 1zn8_A APRT, adenine phosphori 29.8 41 0.0014 19.6 2.6 31 55-85 117-147 (180)
217 2w2g_A Non-structural protein 29.1 34 0.0012 21.7 2.1 34 54-87 89-122 (264)
218 2pa2_A 60S ribosomal protein L 29.0 7.2 0.00025 23.1 -0.9 29 53-84 96-124 (151)
219 1vdm_A Purine phosphoribosyltr 28.2 40 0.0014 19.0 2.2 30 56-85 81-110 (153)
220 1l1q_A Adenine phosphoribosylt 27.6 36 0.0012 20.1 2.0 31 55-85 114-144 (186)
221 3ouv_A Serine/threonine protei 27.3 42 0.0014 16.4 2.0 18 68-85 12-29 (71)
222 3vnn_A DNA ligase 4; non-homol 26.5 93 0.0032 17.6 3.8 23 61-83 102-124 (139)
223 1o57_A PUR operon repressor; p 26.2 36 0.0012 22.0 2.0 31 55-85 193-223 (291)
224 3mjd_A Orotate phosphoribosylt 25.6 49 0.0017 20.7 2.4 31 55-85 133-163 (232)
225 1ex2_A Protein MAF; structural 24.3 90 0.0031 18.9 3.4 29 55-83 66-95 (189)
226 3qw4_B UMP synthase; N-termina 24.1 1.2E+02 0.004 21.0 4.3 33 53-85 360-392 (453)
227 2ps1_A Orotate phosphoribosylt 23.8 52 0.0018 20.1 2.3 30 56-85 123-152 (226)
228 1vq8_H 50S ribosomal protein L 23.6 10 0.00034 23.0 -1.0 28 54-84 126-153 (171)
229 3pjy_A Hypothetical signal pep 23.1 92 0.0032 17.8 3.1 24 37-62 102-125 (136)
230 2b25_A Hypothetical protein; s 23.1 54 0.0018 21.0 2.4 21 46-66 1-21 (336)
231 2p5x_A ASMTL, N-acetylserotoni 22.7 97 0.0033 19.4 3.4 29 55-83 75-104 (230)
232 2amh_A Septum formation protei 22.4 99 0.0034 19.0 3.3 29 55-83 85-114 (207)
233 2aee_A OPRT, oprtase, orotate 21.6 84 0.0029 18.9 2.9 32 54-85 113-144 (211)
234 1lh0_A OMP synthase; loop clos 21.6 87 0.003 18.9 3.0 30 55-85 115-144 (213)
235 2yzk_A OPRT, oprtase, orotate 20.9 65 0.0022 18.8 2.3 31 54-85 103-133 (178)
236 3ka5_A Ribosome-associated pro 20.1 57 0.0019 16.4 1.6 24 2-25 31-54 (65)
No 1
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=99.83 E-value=1.6e-19 Score=101.40 Aligned_cols=73 Identities=23% Similarity=0.346 Sum_probs=63.6
Q ss_pred ccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 8 ~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+++.+.|.. ++|||+|.+++. ..+||+++.++++|+++++|++||.|++|||+++.+++|.+++++||+.+
T Consensus 5 ~~k~V~l~K~~-~~LG~tI~~~g~----g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~ 77 (95)
T 3gge_A 5 IEKEVNVYKSE-DSLGLTITDNGV----GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELK 77 (95)
T ss_dssp EEEEEEEECCS-SCCCEEEECSSS----SCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred eEEEEEEEECC-CCceEEEEcCCC----CcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCC
Confidence 34788888754 799999974332 23799999999999999999999999999999999999999999999865
No 2
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.77 E-value=5.4e-18 Score=98.55 Aligned_cols=84 Identities=23% Similarity=0.413 Sum_probs=70.9
Q ss_pred CcCCCcccEEEEEECCCCCcccEEEEeCCCC-CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490 2 LHLNPVTSEIVVVPKAKGEILGVVIVESGWG-SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY 80 (88)
Q Consensus 2 ~~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~-~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~ 80 (88)
+|+.+...+.+.+.+..+.+|||++.++... ....+++|..+.++|||+++|+|++||+|++|||.++.++++.+++.+
T Consensus 18 ~~~~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~ 97 (118)
T 3b76_A 18 LYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVAL 97 (118)
T ss_dssp CCCEEEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHH
T ss_pred cccCCCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 3566777788888877677999999843221 234479999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q psy3490 81 IKVNH 85 (88)
Q Consensus 81 lk~~~ 85 (88)
++.+.
T Consensus 98 l~~~~ 102 (118)
T 3b76_A 98 LKRTS 102 (118)
T ss_dssp HHSCC
T ss_pred HHcCC
Confidence 99764
No 3
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.77 E-value=7.2e-18 Score=96.67 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=67.3
Q ss_pred cCCCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 3 ~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
+..+..++.+++.+ +.+|||++.++......++++|..+.+++||+++|+|++||+|++|||+++.+++|++++++||
T Consensus 10 ~~~~~~~~~v~l~k--~~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~ 87 (109)
T 1wi4_A 10 LDRDPAFRVITVTK--ETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIIT 87 (109)
T ss_dssp CCCCTTEEEEEECC--SSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHH
T ss_pred CCCCCcEEEEEEeC--CCccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 34566667777765 4799999984332223346999999999999999999999999999999999999999999999
Q ss_pred hCC
Q psy3490 83 VNH 85 (88)
Q Consensus 83 ~~~ 85 (88)
++.
T Consensus 88 ~~~ 90 (109)
T 1wi4_A 88 RAK 90 (109)
T ss_dssp HSC
T ss_pred ccc
Confidence 875
No 4
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.77 E-value=1e-17 Score=91.93 Aligned_cols=67 Identities=22% Similarity=0.363 Sum_probs=59.9
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.+.+++.+.+.++|||++. ++ +|.++.+++||+++| |++||+|++|||+++.+++|++++++||++.
T Consensus 5 ~r~v~l~k~~~g~~Gf~i~-~g--------~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~~g 71 (82)
T 1r6j_A 5 PRTITMHKDSTGHVGFIFK-NG--------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSG 71 (82)
T ss_dssp CEEEEEECCTTSCCCEEEE-TT--------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred eEEEEEEECCCCCeEEEEE-CC--------EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhcCC
Confidence 4778899887779999996 22 478999999999999 9999999999999999999999999999765
No 5
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=99.76 E-value=2.7e-17 Score=92.93 Aligned_cols=82 Identities=51% Similarity=0.830 Sum_probs=70.9
Q ss_pred cCCCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 3 ~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
+++++.++.+.+.+..+.+|||++.+.+.....++++|..+.+++||++++.|++||.|++|||+++.+.+++++..+|+
T Consensus 4 ~~~~~~~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~ 83 (101)
T 2yt7_A 4 GSSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVR 83 (101)
T ss_dssp CSTTCCCEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHH
T ss_pred CCCCCceEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 46788889999998888899999975443334456999999999999997779999999999999999999999999998
Q ss_pred hC
Q psy3490 83 VN 84 (88)
Q Consensus 83 ~~ 84 (88)
..
T Consensus 84 ~~ 85 (101)
T 2yt7_A 84 ET 85 (101)
T ss_dssp HT
T ss_pred hC
Confidence 73
No 6
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.73 E-value=8.1e-17 Score=93.29 Aligned_cols=82 Identities=24% Similarity=0.351 Sum_probs=67.7
Q ss_pred CcCCCcccEEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHH
Q psy3490 2 LHLNPVTSEIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 77 (88)
Q Consensus 2 ~~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~ 77 (88)
.|+.++..+.+.+.+.. .+|||++.+ +.+. ...+++|..+.++|||+++|+|++||.|++|||.++.++++.++
T Consensus 18 ~y~~~~~~~~v~l~k~~-~glG~~i~g-g~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~ 95 (117)
T 2byg_A 18 LYFQSMTVVEIKLFKGP-KGLGFSIAG-GVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEA 95 (117)
T ss_dssp --CEEEEEEEEEEECBT-TBSSEEEEE-CTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHH
T ss_pred cccCCCceEEEEEEeCC-CCcCEEEEc-ccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence 35677777888887654 799999984 3322 23479999999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q psy3490 78 QTYIKVNH 85 (88)
Q Consensus 78 ~~~lk~~~ 85 (88)
+.+++.++
T Consensus 96 ~~~l~~~g 103 (117)
T 2byg_A 96 VAILKNTS 103 (117)
T ss_dssp HHHHHTCC
T ss_pred HHHHHcCC
Confidence 99998654
No 7
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.71 E-value=6.5e-17 Score=92.45 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=63.0
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+.+.+....+|||++.++.......+++|..|.++|||+++|+|++||+|++|||+++.+++|++++.+++.+
T Consensus 7 ~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 81 (108)
T 3cbz_A 7 ITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDI 81 (108)
T ss_dssp EEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHH
T ss_pred EEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence 456666555569999998543222356799999999999999999999999999999999999999999999865
No 8
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.70 E-value=2.1e-16 Score=87.36 Aligned_cols=73 Identities=25% Similarity=0.444 Sum_probs=62.8
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.+.+.+.|..+.+|||++.+.+ ..+++|.++.++|||++++.|++||.|++|||+++.+++++++.++++++.
T Consensus 2 ~r~V~l~K~~~~~lG~~i~~~~----~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~ 74 (88)
T 1kwa_A 2 SRLVQFQKNTDEPMGITLKMNE----LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMR 74 (88)
T ss_dssp CEEEEEEECSSSCCCEEEECSC----GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC
T ss_pred eEEEEEEeCCCCceeEEEEeCC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence 3678888887789999997321 235899999999999995569999999999999999999999999998764
No 9
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=99.70 E-value=5.3e-16 Score=86.26 Aligned_cols=75 Identities=23% Similarity=0.379 Sum_probs=63.9
Q ss_pred cccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 7 VTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 7 ~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+..+.+++.+. +.+|||++..+ ....+++|.++.+++||+++|+|++||+|++|||.++.+.++++++.+++.+.
T Consensus 3 ~~~r~v~l~k~-~~~lG~~i~~~---~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 77 (93)
T 3o46_A 3 DSVKIIRLVKN-REPLGATIKKD---EQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQ 77 (93)
T ss_dssp -CCEEEEEEES-SSCCCEEEEEC---TTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCC
T ss_pred ccEEEEEEEeC-CCCccEEEEec---CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 45577888875 46999999732 23346999999999999999999999999999999999999999999998764
No 10
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.70 E-value=1.3e-16 Score=92.81 Aligned_cols=80 Identities=28% Similarity=0.424 Sum_probs=61.5
Q ss_pred CCcccEEEEEECCCCCcccEEEEeCCCCC--CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 5 NPVTSEIVVVPKAKGEILGVVIVESGWGS--MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 5 ~~~~~~~~~i~~~~~~~lG~~i~~~~~~~--~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
.+...+.+++.+..+.+|||++.+ +.+. ...+++|..+.++|||+++|.|++||+|++|||.++.++++.+++.+++
T Consensus 21 ~~~~~~~v~l~k~~~~~lGf~i~g-g~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~ 99 (120)
T 2iwo_A 21 QSMGLRTVEMKKGPTDSLGISIAG-GVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLK 99 (120)
T ss_dssp ----CEEEEEEC----CCCEEEEE-EEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred CCCCcEEEEEEcCCCCCCCEEEec-ccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 344557788888776799999974 3221 2336999999999999999569999999999999999999999999998
Q ss_pred hCC
Q psy3490 83 VNH 85 (88)
Q Consensus 83 ~~~ 85 (88)
.+.
T Consensus 100 ~~~ 102 (120)
T 2iwo_A 100 NAS 102 (120)
T ss_dssp HCC
T ss_pred cCC
Confidence 765
No 11
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.70 E-value=1.5e-16 Score=90.39 Aligned_cols=74 Identities=31% Similarity=0.496 Sum_probs=61.6
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+.+.+.+ ...+|||++. ++.+...+.++|..+.+++||+++|+|++||+|++|||+++.+++|++++++|+.+
T Consensus 7 ~~~v~l~k-~~~glG~~i~-gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 80 (103)
T 1ufx_A 7 GTLVRVKK-SAATLGIAIE-GGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEA 80 (103)
T ss_dssp SEEEEEEC-CSSSCCEEEE-CBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHH
T ss_pred eEEEEEEc-CCCcCCeEEE-CCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHh
Confidence 35566653 4469999998 44434444459999999999999999999999999999999999999999999874
No 12
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.69 E-value=4e-16 Score=90.30 Aligned_cols=77 Identities=19% Similarity=0.380 Sum_probs=64.4
Q ss_pred ccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 8 ~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..+.+.+.+....+|||++. ++.+....+++|..|.+++||+++|+|++||.|++|||.++.++++.+++.+++...
T Consensus 15 ~~~~v~l~~~~~~~lG~~i~-g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~ 91 (119)
T 1x6d_A 15 GIHVTILHKEEGAGLGFSLA-GGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAR 91 (119)
T ss_dssp TEEEEEEECCTTSCCSEEEE-CCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTT
T ss_pred CeEEEEEEeCCCCccCEEEe-CCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 33556666666679999997 344333457999999999999999999999999999999999999999999998654
No 13
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=99.68 E-value=3.5e-16 Score=88.69 Aligned_cols=77 Identities=31% Similarity=0.447 Sum_probs=63.7
Q ss_pred cccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 7 VTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 7 ~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
...+.+++.+..+.+|||++.+ +.+ ...+++|..+.++|||++++.|++||.|++|||.++.++++.+++.+++.+.
T Consensus 8 ~~~~~v~l~~~~~~~lG~~l~~-g~~-~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~ 84 (103)
T 2dc2_A 8 GPIRKVLLLKEDHEGLGISITG-GKE-HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR 84 (103)
T ss_dssp -CEEEEEEECCSSSCCCEEEEE-EGG-GTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCC
T ss_pred CCcEEEEEEeCCCCccCEEEEe-ccC-CCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 3446788888777899999973 322 2236899999999999997449999999999999999999999999998765
No 14
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=99.68 E-value=1.2e-15 Score=88.99 Aligned_cols=74 Identities=26% Similarity=0.322 Sum_probs=63.8
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+++.+....+|||++.+ +.. ..++++|..+.++|||+++|+|++||+|++|||.++.+++|+++..++++++
T Consensus 21 ~~v~l~k~~~~~lG~~i~g-g~~-~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~ 94 (125)
T 3hpk_A 21 GKVTLQKDAQNLIGISIGG-GAQ-YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 94 (125)
T ss_dssp EEEEEECCTTSCCCEEEEE-CSS-CCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred eEEEEEeCCCCCcCEEEec-cCC-CCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 5677787777799999974 322 3356999999999999999999999999999999999999999999998764
No 15
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.67 E-value=2.7e-16 Score=92.53 Aligned_cols=76 Identities=24% Similarity=0.282 Sum_probs=62.0
Q ss_pred ccEEEEEECCCCCcccEEEEeCCCCC--CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 8 TSEIVVVPKAKGEILGVVIVESGWGS--MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 8 ~~~~~~i~~~~~~~lG~~i~~~~~~~--~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..+.+++.+. ..+|||+|. ++.+. ...+++|..|.+++||+++|.|++||+|++|||.++.+++|++++.+|+.+.
T Consensus 29 ~~~~v~l~k~-~~glG~~i~-gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 106 (130)
T 1i16_A 29 TVCTVTLEKM-SAGLGFSLE-GGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP 106 (130)
T ss_dssp EEEEEEEETT-SSSTTEEEE-CCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSC
T ss_pred cEEEEEEEcC-CCccCEEEe-cCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 3355666643 459999998 34332 2346999999999999999669999999999999999999999999999864
No 16
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.67 E-value=1.2e-15 Score=88.30 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=63.8
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+.+.+.+..+.+|||.+..+. .....+++|..|.+++||+++|+|++||.|++|||+++.++++++++.+|+..
T Consensus 16 ~~~v~l~k~~~~~lG~~i~~~~-~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~ 90 (117)
T 1v62_A 16 PLMVEIVKTPGSALGISLTTTS-LRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASI 90 (117)
T ss_dssp SEEEEEECCTTCCCCCEEEEEC-CSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSC
T ss_pred cEEEEEEcCCCCcccEEEEccC-CCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 3667888877779999997432 22234599999999999999999999999999999999999999999999854
No 17
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=99.67 E-value=2.6e-15 Score=84.49 Aligned_cols=77 Identities=29% Similarity=0.358 Sum_probs=63.7
Q ss_pred cccEEEEEECCCCCcccEEEEeCCCCCC----CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 7 VTSEIVVVPKAKGEILGVVIVESGWGSM----LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 7 ~~~~~~~i~~~~~~~lG~~i~~~~~~~~----~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
...+.+++.+.. .+|||++.+ +.+.+ ..+++|..+.+++||+++|.|++||.|++|||.++.++++.++..+++
T Consensus 6 ~~~~~v~l~~~~-~~lG~~l~~-g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~ 83 (101)
T 2jik_A 6 VTEEEINLTRGP-SGLGFNIVG-GTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR 83 (101)
T ss_dssp EEEEEEEEECCT-TCCCEEEEE-CTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred CccEEEEEEeCC-CCCCEEEec-cccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 344677777644 699999984 33322 357999999999999999999999999999999999999999999998
Q ss_pred hCC
Q psy3490 83 VNH 85 (88)
Q Consensus 83 ~~~ 85 (88)
...
T Consensus 84 ~~g 86 (101)
T 2jik_A 84 NAG 86 (101)
T ss_dssp TCC
T ss_pred hCC
Confidence 653
No 18
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=99.66 E-value=2.5e-15 Score=85.23 Aligned_cols=77 Identities=29% Similarity=0.365 Sum_probs=62.6
Q ss_pred cccEEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 7 VTSEIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 7 ~~~~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
+....+++.+.. .+|||++.+ +.+. ...+++|..+.++|||+++|+|++||.|++|||.++.+.++.+++..++
T Consensus 2 e~~~~v~l~k~~-~glG~~i~g-g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~ 79 (105)
T 2awx_A 2 EKIMEIKLIKGP-KGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALK 79 (105)
T ss_dssp -CEEEEEEECBT-TBSSEEEEE-CBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred CeEEEEEEEECC-CCCCEEEeC-ccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 344566677544 599999984 3322 2347999999999999999999999999999999999999999999998
Q ss_pred hCC
Q psy3490 83 VNH 85 (88)
Q Consensus 83 ~~~ 85 (88)
.+.
T Consensus 80 ~~~ 82 (105)
T 2awx_A 80 NTS 82 (105)
T ss_dssp SCC
T ss_pred cCC
Confidence 654
No 19
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=99.66 E-value=1.5e-15 Score=93.20 Aligned_cols=73 Identities=29% Similarity=0.478 Sum_probs=59.9
Q ss_pred EEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 12 VVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 12 ~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+++.+.. .+|||+|.+++.+. ...+++|..|.+++||+++|+|++||+|++|||.++.+++|.+++.+|+.++
T Consensus 84 v~l~k~~-~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g 160 (170)
T 3egg_C 84 VELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK 160 (170)
T ss_dssp EEEECBT-TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCC
T ss_pred EEEEeCC-CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 4444332 49999998522221 2347999999999999999999999999999999999999999999999764
No 20
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=99.65 E-value=1.2e-15 Score=83.74 Aligned_cols=74 Identities=32% Similarity=0.487 Sum_probs=62.1
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+++.+..+.+|||++.+ +.. ...+++|..+.++|||++++.|++||+|++|||.++.++++.+++.+++.+.
T Consensus 4 ~~v~l~~~~~~~lG~~i~~-~~~-~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 77 (87)
T 4e34_A 4 RKVLLLKEDHEGLGISITG-GKE-HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR 77 (87)
T ss_dssp EEEEEECCTTBCCCEEEEE-EGG-GTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred EEEEEEECCCCcccEEEEc-cCC-CCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 5678888777799999973 322 2245899999999999995349999999999999999999999999998764
No 21
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=99.65 E-value=1.9e-15 Score=85.12 Aligned_cols=72 Identities=21% Similarity=0.400 Sum_probs=63.2
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+.+.+.+..+++|||++.... ..+++|.++.++|||+++|+|++||.|++|||.++.+++++++.++++.+
T Consensus 13 ~~~v~l~K~~~~~lG~~l~~~~----~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~ 84 (97)
T 2ejy_A 13 VRLIQFEKVTEEPMGICLKLNE----KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET 84 (97)
T ss_dssp CEEEEEEECSSSCCSEEEEECT----TCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC
T ss_pred cEEEEEEeCCCCCeeEEEEeCC----CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 3678899888889999996211 23699999999999999999999999999999999999999999999865
No 22
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=99.65 E-value=1e-15 Score=89.81 Aligned_cols=82 Identities=27% Similarity=0.418 Sum_probs=67.2
Q ss_pred CCCcccEEEEEECCC-CCcccEEEEeCCCC-------CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHH
Q psy3490 4 LNPVTSEIVVVPKAK-GEILGVVIVESGWG-------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 75 (88)
Q Consensus 4 ~~~~~~~~~~i~~~~-~~~lG~~i~~~~~~-------~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~ 75 (88)
..+...+.+.+.+.. +.+|||++.++... ...++++|..+.++|||+++|.|++||.|++|||.++.+.++.
T Consensus 25 ~~~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~ 104 (128)
T 1nf3_C 25 ILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLD 104 (128)
T ss_dssp TSCTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHH
T ss_pred cCCCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence 456777888888765 46999999743210 0123699999999999999998999999999999999999999
Q ss_pred HHHHHHHhCC
Q psy3490 76 TCQTYIKVNH 85 (88)
Q Consensus 76 ~~~~~lk~~~ 85 (88)
+++.+++.+.
T Consensus 105 ~~~~~l~~~~ 114 (128)
T 1nf3_C 105 QVTDMMIANS 114 (128)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHcCC
Confidence 9999998654
No 23
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=99.65 E-value=2.7e-15 Score=85.17 Aligned_cols=78 Identities=29% Similarity=0.419 Sum_probs=62.2
Q ss_pred ccEEEEEECCCCCcccEEEEeCCC-CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 8 TSEIVVVPKAKGEILGVVIVESGW-GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 8 ~~~~~~i~~~~~~~lG~~i~~~~~-~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..+.+++.++...+|||++.++.. .....+++|..+.++|||+++|+|++||.|++|||.++.++++.+++.+++.+.
T Consensus 9 ~~~~~~v~l~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g 87 (106)
T 3axa_A 9 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS 87 (106)
T ss_dssp -CCEEEEEEECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred CceEEEEEECCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 334455555445699999974322 223447999999999999999999999999999999999999999999998654
No 24
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=99.65 E-value=4.5e-15 Score=82.19 Aligned_cols=73 Identities=26% Similarity=0.333 Sum_probs=62.3
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..+++.+..+.+|||++.+ +. ...+++|..+.++|||+++|+|++||.|++|||.++.+.++.++..+++.+.
T Consensus 6 ~~v~l~k~~~~~lG~~~~~-~~--~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 78 (92)
T 2qg1_A 6 LTIGLQKKPGKGLGLSIVG-KR--NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSL 78 (92)
T ss_dssp EEEEEECCTTSCCSEEEEC-CS--SSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred EEEEEEeCCCCcccEEEEe-cc--CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 5577887767799999973 22 2346999999999999999999999999999999999999999999988653
No 25
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.65 E-value=1.8e-15 Score=87.46 Aligned_cols=78 Identities=26% Similarity=0.324 Sum_probs=63.4
Q ss_pred ccEEEEEECCC------CCcccEEEEeCCCC---CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHH
Q psy3490 8 TSEIVVVPKAK------GEILGVVIVESGWG---SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQ 78 (88)
Q Consensus 8 ~~~~~~i~~~~------~~~lG~~i~~~~~~---~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~ 78 (88)
..+.+.+.+.. +.+|||++.++... ....+++|..+.+++||+++|+|++||+|++|||.++.+++|.+++
T Consensus 12 ~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~ 91 (117)
T 1ujd_A 12 PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQ 91 (117)
T ss_dssp CEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHH
T ss_pred ceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHH
Confidence 34667777665 46999999743221 1233699999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q psy3490 79 TYIKVNH 85 (88)
Q Consensus 79 ~~lk~~~ 85 (88)
.+++.+.
T Consensus 92 ~~l~~~~ 98 (117)
T 1ujd_A 92 SIISQQS 98 (117)
T ss_dssp HHHSCCS
T ss_pred HHHhcCC
Confidence 9998753
No 26
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.65 E-value=4.6e-15 Score=84.78 Aligned_cols=82 Identities=26% Similarity=0.370 Sum_probs=67.4
Q ss_pred cCCCcccEEEEEECCCCC-cccEEEEeCCCC-CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490 3 HLNPVTSEIVVVPKAKGE-ILGVVIVESGWG-SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY 80 (88)
Q Consensus 3 ~~~~~~~~~~~i~~~~~~-~lG~~i~~~~~~-~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~ 80 (88)
|++++..+.+.+...++. +|||++.+.... ....+++|..+.++|||+++|+|++||.|++|||.++.+.++.++..+
T Consensus 4 y~~~~~~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~ 83 (111)
T 2koj_A 4 YNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSL 83 (111)
T ss_dssp CCCSSSCEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred ccCcccCcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 677888887777665544 999999743221 112469999999999999998899999999999999999999999999
Q ss_pred HHhC
Q psy3490 81 IKVN 84 (88)
Q Consensus 81 lk~~ 84 (88)
++..
T Consensus 84 l~~~ 87 (111)
T 2koj_A 84 LRST 87 (111)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 9874
No 27
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.65 E-value=3e-15 Score=85.38 Aligned_cols=75 Identities=28% Similarity=0.337 Sum_probs=62.3
Q ss_pred cEEEEEECCCCCcccEEEEeCCCC--CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWG--SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~--~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+.+.+.+. ..+|||++.++... ....+++|..+.+++||+++|+|++||+|++|||.++.++++++++.+++.+
T Consensus 16 ~~~v~l~k~-~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 92 (108)
T 2d92_A 16 VKIVELVKD-CKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAV 92 (108)
T ss_dssp CEEEEEEEC-SSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHS
T ss_pred eEEEEEEEC-CCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 366777765 36999999743221 1234699999999999999999999999999999999999999999999875
No 28
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.65 E-value=2.6e-15 Score=86.61 Aligned_cols=77 Identities=27% Similarity=0.353 Sum_probs=64.5
Q ss_pred ccEEEEEECCCCCcccEEEEeCCCCC--------CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHH
Q psy3490 8 TSEIVVVPKAKGEILGVVIVESGWGS--------MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQT 79 (88)
Q Consensus 8 ~~~~~~i~~~~~~~lG~~i~~~~~~~--------~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~ 79 (88)
..+.+.+.+..+.+|||++. ++.+. ...+++|..+.+++||+++|+|++||.|++|||.++.++++.+++.
T Consensus 15 ~~~~v~l~k~~~~~lG~~i~-gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~ 93 (117)
T 2ehr_A 15 PPRIVEIFREPNVSLGISIV-GGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVE 93 (117)
T ss_dssp CCEEEEECCCSSSCCCEEEC-CCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHH
T ss_pred CCEEEEEEeCCCCccCEEEe-CCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 34677788776679999997 33322 2357999999999999999989999999999999999999999999
Q ss_pred HHHhCC
Q psy3490 80 YIKVNH 85 (88)
Q Consensus 80 ~lk~~~ 85 (88)
+++.+.
T Consensus 94 ~~~~~g 99 (117)
T 2ehr_A 94 AIKNAG 99 (117)
T ss_dssp HHHTSC
T ss_pred HHHcCC
Confidence 998753
No 29
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.65 E-value=2.3e-15 Score=85.67 Aligned_cols=71 Identities=28% Similarity=0.414 Sum_probs=57.7
Q ss_pred EECCCCCcccEEEEeCCCCCC----CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 14 VPKAKGEILGVVIVESGWGSM----LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 14 i~~~~~~~lG~~i~~~~~~~~----~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+...+..+|||++.+ +.+.. ..+++|..+.++|||+++|+|++||+|++|||.++.++++.+++.+++.++
T Consensus 7 ~~~~~~~~~Gf~i~g-G~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 81 (106)
T 4amh_A 7 LVPRGSKGLGFSIAG-GVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTS 81 (106)
T ss_dssp -----CCCSCEEEEE-CTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCC
T ss_pred cCCCCCCccCEEEEe-ccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCC
Confidence 334455699999984 44332 337999999999999999999999999999999999999999999998764
No 30
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=99.65 E-value=5e-15 Score=85.39 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=65.5
Q ss_pred cCCCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 3 ~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
++.+...+.+++.+....+|||++.++. ...++++|..+.++|||+++|+|++||.|++|||.++.+.+++++..+++
T Consensus 19 ~~q~~~~~~V~l~~~~~~~lG~~l~~~~--~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~ 96 (114)
T 2gzv_A 19 YFQSMVPGKVTLQKDAQNLIGISIGGGA--QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 96 (114)
T ss_dssp ---CCCCEEEEEECCTTSCCSEEEEECC--C--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred eeccCCCEEEEEEECCCCcEeEEEEeCC--CCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 3445556888888877778999997332 22346999999999999999999999999999999999999999999998
Q ss_pred hCC
Q psy3490 83 VNH 85 (88)
Q Consensus 83 ~~~ 85 (88)
...
T Consensus 97 ~~~ 99 (114)
T 2gzv_A 97 EVK 99 (114)
T ss_dssp HCC
T ss_pred cCC
Confidence 654
No 31
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.65 E-value=4.9e-16 Score=88.98 Aligned_cols=80 Identities=29% Similarity=0.431 Sum_probs=66.2
Q ss_pred CcccEEEEEECCCCCcccEEEEeCCCC-------CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHH
Q psy3490 6 PVTSEIVVVPKAKGEILGVVIVESGWG-------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQ 78 (88)
Q Consensus 6 ~~~~~~~~i~~~~~~~lG~~i~~~~~~-------~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~ 78 (88)
|...+.+.+.+..+.+|||++.++... ....+++|..+.+++||+++|+|++||.|++|||+++.++++.+++
T Consensus 7 ~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~ 86 (111)
T 1uju_A 7 GPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAV 86 (111)
T ss_dssp SCSSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHH
T ss_pred CCccEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 344577888887778999999843211 2234699999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q psy3490 79 TYIKVNH 85 (88)
Q Consensus 79 ~~lk~~~ 85 (88)
.+++...
T Consensus 87 ~~l~~~g 93 (111)
T 1uju_A 87 QLLRSVG 93 (111)
T ss_dssp HHHSSCS
T ss_pred HHHHcCC
Confidence 9998653
No 32
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=99.65 E-value=4.5e-15 Score=82.97 Aligned_cols=76 Identities=22% Similarity=0.338 Sum_probs=62.7
Q ss_pred cEEEEEECCCCCcccEEEEeCC-----CCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 9 SEIVVVPKAKGEILGVVIVESG-----WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~-----~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.+.+++.+..+.+|||++.+.+ ......+++|..+.++|||+++| |++||.|++|||.++.+++++++..+++.
T Consensus 5 ~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~ 83 (96)
T 2ego_A 5 RKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKA 83 (96)
T ss_dssp EEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred cEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 3678888877779999997411 11123468999999999999999 99999999999999999999999999987
Q ss_pred CC
Q psy3490 84 NH 85 (88)
Q Consensus 84 ~~ 85 (88)
..
T Consensus 84 ~~ 85 (96)
T 2ego_A 84 SG 85 (96)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 33
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.65 E-value=5e-15 Score=81.87 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=61.0
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.+.+++.+.. .+|||++.++. ...+++|..+.++|||+++| |++||.|++|||.++.++++.++..+++.+.
T Consensus 4 ~r~v~l~r~~-~g~G~~~~~~~---~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 75 (91)
T 1g9o_A 4 PRLCCLEKGP-NGYGFHLHGEK---GKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAAL 75 (91)
T ss_dssp CEEEEEECBT-TBCCEEEEECT---TCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCS
T ss_pred cEEEEEEeCC-CcccEEEEecC---CCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 4678888754 48999997322 12469999999999999999 9999999999999999999999999998753
No 34
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.65 E-value=4.9e-15 Score=84.28 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=64.6
Q ss_pred cCCCcccEEEEEEC---CCCCcccEEEEeCCCCC---CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHH
Q psy3490 3 HLNPVTSEIVVVPK---AKGEILGVVIVESGWGS---MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLST 76 (88)
Q Consensus 3 ~~~~~~~~~~~i~~---~~~~~lG~~i~~~~~~~---~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~ 76 (88)
|+++++++.+.+.. ....+|||++.++.... ...+++|..+.+++||+++|+|++||.|++|||.++.++++.+
T Consensus 5 ~~~~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~ 84 (108)
T 2jre_A 5 YSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSD 84 (108)
T ss_dssp CCSSSSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHH
T ss_pred cccccCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 56677776666555 33449999997322211 2347999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy3490 77 CQTYIKV 83 (88)
Q Consensus 77 ~~~~lk~ 83 (88)
+..+++.
T Consensus 85 ~~~~l~~ 91 (108)
T 2jre_A 85 VVEVLRN 91 (108)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9999875
No 35
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=99.64 E-value=1.9e-15 Score=83.50 Aligned_cols=75 Identities=27% Similarity=0.288 Sum_probs=63.1
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.+.+++.+..+.+|||++.+ +.. ...+++|..+.++|||++++.|++||.|++|||.++.++++.+++.+++.+.
T Consensus 5 ~~~v~l~k~~~~~lG~~i~~-~~~-~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~ 79 (90)
T 1qav_A 5 RRRVTVRKADAGGLGISIKG-GRE-NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG 79 (90)
T ss_dssp CEEEEEECCTTTCCCEEEEE-EGG-GTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred cEEEEEEeCCCCCcCEEEEc-ccC-CCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 36788888777899999973 222 2346999999999999999459999999999999999999999999998753
No 36
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.64 E-value=3.1e-15 Score=88.27 Aligned_cols=75 Identities=24% Similarity=0.349 Sum_probs=63.1
Q ss_pred EEEEEECCCCCcccEEEEeCCCCC----------CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHH
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGS----------MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQT 79 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~----------~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~ 79 (88)
+.+++.+....+|||+|.++.... ...+++|..|.++|||+++| |++||+|++|||.++.++++.+++.
T Consensus 29 r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~ 107 (132)
T 3l4f_D 29 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVN 107 (132)
T ss_dssp CEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCHHHHHH
T ss_pred EEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHH
Confidence 678888776679999998543211 11269999999999999999 9999999999999999999999999
Q ss_pred HHHhCC
Q psy3490 80 YIKVNH 85 (88)
Q Consensus 80 ~lk~~~ 85 (88)
+++.+.
T Consensus 108 ~l~~~g 113 (132)
T 3l4f_D 108 MIRQGG 113 (132)
T ss_dssp HHHHTT
T ss_pred HHHcCC
Confidence 998754
No 37
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.64 E-value=2.9e-15 Score=84.96 Aligned_cols=72 Identities=26% Similarity=0.436 Sum_probs=58.8
Q ss_pred EEEECCCC-CcccEEEEeCCCC-----CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 12 VVVPKAKG-EILGVVIVESGWG-----SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 12 ~~i~~~~~-~~lG~~i~~~~~~-----~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+++...++ .+|||++.+ +.+ ....+++|..|.+++||+++|.|++||.|++|||.++.++++.+++.+++..
T Consensus 9 ~~v~l~~~~~glG~~l~~-g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 86 (105)
T 1wha_A 9 HVACLARSERGLGFSIAG-GKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA 86 (105)
T ss_dssp EEEEECCCTTCCSCEEEC-CTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC
T ss_pred EEEEEEeCCCccCEEEEe-ccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 33433333 489999983 332 1245799999999999999999999999999999999999999999999865
No 38
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=99.64 E-value=5.4e-15 Score=81.56 Aligned_cols=72 Identities=22% Similarity=0.388 Sum_probs=59.8
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+++.+.. .+|||++.+ +.... .+++|..+.++|||+++|+|++||.|++|||.++.+.++.++..+++.+
T Consensus 4 ~~v~l~~~~-~g~G~~~~~-g~~~~-~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 75 (90)
T 2q9v_A 4 QDIFLWRKE-TGFGFRILG-GNEPG-EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQA 75 (90)
T ss_dssp EEEEEECBT-TBCCEEEEE-CSSTT-SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHH
T ss_pred EEEEEEECC-CccCEEEEc-cccCC-CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 556677543 589999973 33222 3499999999999999999999999999999999999999999998754
No 39
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=99.64 E-value=1.6e-15 Score=87.87 Aligned_cols=76 Identities=32% Similarity=0.444 Sum_probs=62.4
Q ss_pred ccEEEEEECCCCCcccEEEEeCCCCC--CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 8 TSEIVVVPKAKGEILGVVIVESGWGS--MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 8 ~~~~~~i~~~~~~~lG~~i~~~~~~~--~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..+.+++.+.. .+|||++.++ .+. ...+++|..|.++|||+++|+|++||.|++|||.++.++++.+++.+++.+.
T Consensus 25 ~~~~v~L~k~~-~glGf~l~~g-~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 102 (117)
T 2fne_A 25 QCKSITLERGP-DGLGFSIVGG-YGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK 102 (117)
T ss_dssp EEEEEEECCBT-TBTSEEEEEE-EEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred ccEEEEEEeCC-CcccEEEecc-cCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 34667777643 6999999743 221 1346999999999999999999999999999999999999999999998654
No 40
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.64 E-value=4.9e-15 Score=85.05 Aligned_cols=80 Identities=23% Similarity=0.330 Sum_probs=63.4
Q ss_pred cCCCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 3 ~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
++.+...+.+.+.+.. .+|||++.+ +. ....+++|..|.++|||+++|+|++||.|++|||.++.+.++.++...++
T Consensus 19 ~~~~~~~~~v~l~~~~-~glG~~l~~-~~-~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 95 (112)
T 2r4h_A 19 YFQSMDFYTVELERGA-KGFGFSLRG-GR-EYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIK 95 (112)
T ss_dssp ----CCEEEEEEECBT-TBTSEEEEE-CG-GGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred ccCCCceEEEEEEcCC-CccCEEEec-cc-cCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 4566777778887643 589999973 32 22346999999999999999989999999999999999999999999988
Q ss_pred hCC
Q psy3490 83 VNH 85 (88)
Q Consensus 83 ~~~ 85 (88)
..+
T Consensus 96 ~~g 98 (112)
T 2r4h_A 96 NGG 98 (112)
T ss_dssp TTT
T ss_pred cCC
Confidence 643
No 41
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=99.64 E-value=2.1e-15 Score=88.32 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=64.3
Q ss_pred ccEEEEEECCCCCcccEEEEeCCCC-CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECC-CCCHHHHHHHHHhCC
Q psy3490 8 TSEIVVVPKAKGEILGVVIVESGWG-SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV-GLPLSTCQTYIKVNH 85 (88)
Q Consensus 8 ~~~~~~i~~~~~~~lG~~i~~~~~~-~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~-~~~~~~~~~~lk~~~ 85 (88)
..+.+.+.+....+|||++.++... ....+++|..|.+++||+++|+|++||.|++|||.++. ++++.+++.+++...
T Consensus 25 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~ 104 (128)
T 2db5_A 25 QIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTT 104 (128)
T ss_dssp EEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCC
T ss_pred ceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCC
Confidence 3466778876667999999743221 12337999999999999999999999999999999997 999999999998754
No 42
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.64 E-value=4e-15 Score=83.25 Aligned_cols=78 Identities=23% Similarity=0.402 Sum_probs=64.0
Q ss_pred ccEEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 8 TSEIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 8 ~~~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
..+.+++.+....+|||++.++.... ...+++|..+.++|||+++|+|++||.|++|||.++.++++.++..+++.
T Consensus 5 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~ 84 (98)
T 1ihj_A 5 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE 84 (98)
T ss_dssp EEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred eEEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence 34678888767779999997432211 12369999999999999999899999999999999999999999999986
Q ss_pred CC
Q psy3490 84 NH 85 (88)
Q Consensus 84 ~~ 85 (88)
..
T Consensus 85 ~g 86 (98)
T 1ihj_A 85 AD 86 (98)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 43
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.64 E-value=4.4e-15 Score=86.52 Aligned_cols=74 Identities=23% Similarity=0.396 Sum_probs=62.0
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+.+.+. ..+|||++. ++......+++|..|.++|||+++|+|++||.|++|||+++.++++.+++.+++.+.
T Consensus 27 ~~v~l~k~-~~glG~~l~-~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~ 100 (124)
T 2daz_A 27 HIIELEKD-KNGLGLSLA-GNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAP 100 (124)
T ss_dssp EEEEEECC-SSCCCEEEE-CBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSC
T ss_pred EEEEEEeC-CCccCEEEe-ccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 45666654 459999997 343344457999999999999999999999999999999999999999999998754
No 44
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=99.64 E-value=1.4e-14 Score=80.39 Aligned_cols=76 Identities=29% Similarity=0.368 Sum_probs=62.5
Q ss_pred ccEEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 8 TSEIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 8 ~~~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
+.+.+++.+. ..+|||++.+ +.+. ...+++|..+.++|||+++|.|++||.|++|||.++.++++.++..+++.
T Consensus 3 ~~~~v~l~k~-~~g~G~~i~g-g~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~ 80 (94)
T 2fe5_A 3 TIMEVNLLKG-PKGLGFSIAG-GIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKN 80 (94)
T ss_dssp CEEEEEEECC-TTCSCEEEEE-CBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHT
T ss_pred EEEEEEEEEC-CCCCCEEEEc-ccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 3466777764 4599999984 3222 23479999999999999999999999999999999999999999999986
Q ss_pred CC
Q psy3490 84 NH 85 (88)
Q Consensus 84 ~~ 85 (88)
..
T Consensus 81 ~~ 82 (94)
T 2fe5_A 81 TS 82 (94)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 45
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.63 E-value=7e-16 Score=90.45 Aligned_cols=82 Identities=27% Similarity=0.339 Sum_probs=63.9
Q ss_pred cCCCcccE--EEEEECC--CCCcccEEEEeCCCC--CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHH
Q psy3490 3 HLNPVTSE--IVVVPKA--KGEILGVVIVESGWG--SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLST 76 (88)
Q Consensus 3 ~~~~~~~~--~~~i~~~--~~~~lG~~i~~~~~~--~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~ 76 (88)
++.|...+ .+++... ...+|||++.++... ....+++|..|.+++||+++|+|++||+|++|||.++.+++|.+
T Consensus 16 ~~~~~~~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~ 95 (127)
T 1wg6_A 16 ALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHE 95 (127)
T ss_dssp CSSCCCCEEEEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHH
T ss_pred ccCCCCCCceEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence 55665544 4556543 344999999733211 01236999999999999999999999999999999999999999
Q ss_pred HHHHHHhC
Q psy3490 77 CQTYIKVN 84 (88)
Q Consensus 77 ~~~~lk~~ 84 (88)
++.+|+.+
T Consensus 96 ~~~~l~~~ 103 (127)
T 1wg6_A 96 AMETLRRS 103 (127)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999864
No 46
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=99.63 E-value=8.5e-15 Score=81.92 Aligned_cols=74 Identities=28% Similarity=0.439 Sum_probs=60.6
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+++.+. ..+|||++.+ +.+....+++|..+.++|||+++|+|++||.|++|||.++.++++.++...++...
T Consensus 6 ~~v~l~~~-~~~lG~~l~~-~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 79 (98)
T 2opg_A 6 TTIEISKG-RTGLGLSIVG-GSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTP 79 (98)
T ss_dssp EEEEEECB-TTBTCEEEEE-CTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred EEEEEEEC-CCcccEEEec-CCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 44555543 3589999973 33333357999999999999999999999999999999999999999999988653
No 47
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=99.63 E-value=1.2e-14 Score=81.90 Aligned_cols=75 Identities=28% Similarity=0.380 Sum_probs=62.0
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+.+.+.+. ..+|||++.+ +.+. ...+++|..+.++|||+++|.|++||.|++|||.++.++++.+++..++.+
T Consensus 5 ~~~v~l~k~-~~glG~~i~~-g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 82 (102)
T 2i1n_A 5 YEEIVLERG-NSGLGFSIAG-GIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEA 82 (102)
T ss_dssp EEEEEEECB-TTBTSEEEEE-CTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred EEEEEEEEC-CCcCCEEEEc-ccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 355667653 4599999984 3322 245799999999999999999999999999999999999999999999875
Q ss_pred C
Q psy3490 85 H 85 (88)
Q Consensus 85 ~ 85 (88)
.
T Consensus 83 g 83 (102)
T 2i1n_A 83 G 83 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 48
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.6e-15 Score=82.82 Aligned_cols=74 Identities=30% Similarity=0.370 Sum_probs=62.6
Q ss_pred CcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 6 PVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 6 ~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
++..+.+.+.+..+.+|||++.+ . ..+++|..+.+++||+++|.|++||.|++|||+++ +.+++++..+++...
T Consensus 4 ~~~~r~v~l~k~~~~~lG~~i~~--~---~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~ 77 (91)
T 2e7k_A 4 GSSGRMVGIRKTAGEHLGVTFRV--E---GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNAS 77 (91)
T ss_dssp CCCSCBCCBCCCTTCCCCEEEEE--S---SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCC
T ss_pred CCCcEEEEEEECCCCcEeEEEEe--c---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCC
Confidence 44456677777777799999973 1 23599999999999999988999999999999999 899999999998653
No 49
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.63 E-value=1.6e-14 Score=82.14 Aligned_cols=74 Identities=27% Similarity=0.366 Sum_probs=59.3
Q ss_pred EEEEEECCCCCcccEEEEeCCCCC-------CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGS-------MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~-------~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
+.+++.+. ..+|||++.+ +... ...+++|..+.+++||++++.|++||.|++|||+++.++++.+++.+++
T Consensus 10 ~~v~l~k~-~~~lG~~i~g-~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~ 87 (107)
T 1uhp_A 10 LTLVLHRD-SGSLGFNIIG-GRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFK 87 (107)
T ss_dssp EEEEECCS-SSCCSEEEEC-CCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHH
T ss_pred EEEEEEeC-CCccCEEEEc-CCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 33445443 4599999983 3211 2447999999999999999459999999999999999999999999998
Q ss_pred hCC
Q psy3490 83 VNH 85 (88)
Q Consensus 83 ~~~ 85 (88)
.+.
T Consensus 88 ~~~ 90 (107)
T 1uhp_A 88 TAK 90 (107)
T ss_dssp HCC
T ss_pred cCC
Confidence 654
No 50
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.63 E-value=8.8e-15 Score=82.88 Aligned_cols=73 Identities=32% Similarity=0.449 Sum_probs=62.5
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+.+++.+..+.+|||++.+ +. ....+++|..|.+++||+++| |++||.|++|||.++.++++.+++.+++..
T Consensus 16 ~~~v~l~k~~~~~lG~~~~~-~~-~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 88 (104)
T 1wi2_A 16 PRIVTLKKPPGAQLGFNIRG-GK-ASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTA 88 (104)
T ss_dssp CEEEEECCCTTCCCSEEEEC-CS-SSCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred CEEEEEEeCCCCCccEEEEc-cc-CCCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Confidence 47788888777799999973 32 223468999999999999999 999999999999999999999999999863
No 51
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.63 E-value=3.6e-15 Score=84.36 Aligned_cols=70 Identities=21% Similarity=0.342 Sum_probs=57.7
Q ss_pred EEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 12 ~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+++.+ ...+|||++. ++. ....+++|..+.+++||+++|+|++||.|++|||+++.++++.+++.+++.+
T Consensus 13 v~l~~-~~~g~G~~i~-~g~-~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~ 82 (103)
T 1uep_A 13 VHLRR-MESGFGFRIL-GGD-EPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHA 82 (103)
T ss_dssp CEEES-SSSSCCEEEC-CCC-STTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHH
T ss_pred EEEEe-CCCccCEEEe-eec-CCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 34444 3449999996 232 2334689999999999999999999999999999999999999999999764
No 52
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.63 E-value=5.7e-15 Score=82.50 Aligned_cols=73 Identities=29% Similarity=0.506 Sum_probs=58.6
Q ss_pred EEEEECCCCCcccEEEEeCCCC--CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 11 IVVVPKAKGEILGVVIVESGWG--SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 11 ~~~i~~~~~~~lG~~i~~~~~~--~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+++.+ ...+|||++.++... ....+++|..+.++|||+++|+|++||.|++|||.++.++++.++..+++..
T Consensus 6 ~v~l~k-~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 80 (97)
T 2jil_A 6 EVTLHK-EGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQC 80 (97)
T ss_dssp EEEEEC-BTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred EEEEEe-CCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 344543 345999999743221 1234799999999999999998999999999999999999999999999863
No 53
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.63 E-value=3.5e-15 Score=86.42 Aligned_cols=73 Identities=25% Similarity=0.393 Sum_probs=59.6
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+.+.+.+ ..+|||++. ++.......++|.++.+++||+++|.|++||+|++|||.++.+++|++++++|+..
T Consensus 19 ~~~~~~~~--~~glG~~i~-gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~ 91 (118)
T 1v6b_A 19 VRLLRIKK--EGSLDLALE-GGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKA 91 (118)
T ss_dssp EEEEEEES--CSCCCCEEE-EBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHH
T ss_pred EEEEEECC--CCccCEEEE-cccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHh
Confidence 35555554 348999997 34444444599999999999999956999999999999999999999999999754
No 54
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=99.63 E-value=1.1e-14 Score=81.09 Aligned_cols=73 Identities=30% Similarity=0.360 Sum_probs=60.9
Q ss_pred EEEEEECC-CCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKA-KGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~-~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..+++.+. .+.+|||++.+ +. ...+++|..+.++|||+++|+|++||.|++|||.++.++++.++...++.+.
T Consensus 5 ~~v~l~k~~~~~~lG~~~~~-~~--~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g 78 (95)
T 2vwr_A 5 LQVALHKRDSGEQLGIKLVR-RT--DEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASG 78 (95)
T ss_dssp EEEEEECSSTTCCCCEEEEE-CS--SSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred EEEEEEECCCCCcccEEEEe-cc--CCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 45667765 34599999973 22 2346999999999999999999999999999999999999999999988653
No 55
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=99.62 E-value=2.3e-14 Score=79.84 Aligned_cols=77 Identities=26% Similarity=0.370 Sum_probs=62.3
Q ss_pred cccEEEEEECCCCCcccEEEEeCCCCC--CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 7 VTSEIVVVPKAKGEILGVVIVESGWGS--MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 7 ~~~~~~~i~~~~~~~lG~~i~~~~~~~--~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.....+.+.+. +.+|||++.+ +... ...+++|..+.++|||+++|+|++||.|++|||.++.++++.++..+++.+
T Consensus 4 g~~~~v~l~k~-~~~lG~~i~~-g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 81 (96)
T 1d5g_A 4 GDIFEVELAKN-DNSLGISVTG-GVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 81 (96)
T ss_dssp TCEEEEEEECS-SSSCCEEEEC-CSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred CCEEEEEEEeC-CCCCCEEEEC-CCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 33455666653 4699999973 3322 234799999999999999998999999999999999999999999999864
Q ss_pred C
Q psy3490 85 H 85 (88)
Q Consensus 85 ~ 85 (88)
.
T Consensus 82 g 82 (96)
T 1d5g_A 82 G 82 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 56
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.62 E-value=7.7e-15 Score=83.45 Aligned_cols=79 Identities=28% Similarity=0.439 Sum_probs=61.4
Q ss_pred cccEEEEEECCC-CCcccEEEEeC--CCCC--CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy3490 7 VTSEIVVVPKAK-GEILGVVIVES--GWGS--MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI 81 (88)
Q Consensus 7 ~~~~~~~i~~~~-~~~lG~~i~~~--~~~~--~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~l 81 (88)
+..+.+.+...+ ..+|||++.++ +... ...+++|..+.+++||+++|+|++||.|++|||.++.++++.+++.++
T Consensus 6 ~~~~~~~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~ 85 (107)
T 1wf8_A 6 SGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVL 85 (107)
T ss_dssp CCEEEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHH
T ss_pred CCceEEEEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 334444444323 35999999852 2222 234799999999999999999999999999999999999999999999
Q ss_pred HhCC
Q psy3490 82 KVNH 85 (88)
Q Consensus 82 k~~~ 85 (88)
+...
T Consensus 86 ~~~~ 89 (107)
T 1wf8_A 86 RNTK 89 (107)
T ss_dssp HHCC
T ss_pred hcCC
Confidence 8654
No 57
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=99.62 E-value=7.9e-16 Score=90.70 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=57.4
Q ss_pred CCCcccEEEEeCCC-CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 18 KGEILGVVIVESGW-GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 18 ~~~~lG~~i~~~~~-~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+.+|||++.++.. .....++||..|.+++||+++|+|++||+|++|||+++.+++|++++.+++.+
T Consensus 46 ~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~ 113 (131)
T 1wfg_A 46 SGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILES 113 (131)
T ss_dssp SCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHT
T ss_pred CCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence 45699999974322 12234799999999999999999999999999999999999999999999876
No 58
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1e-14 Score=84.48 Aligned_cols=75 Identities=28% Similarity=0.354 Sum_probs=62.2
Q ss_pred ccEEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 8 TSEIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 8 ~~~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
..+.+++.+.. .+|||++.+ +.+. ...+++|..|.+++||+++|+|++||.|++|||+++.++++.+++.+++.
T Consensus 17 ~~~~v~l~r~~-~~lG~~i~~-~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~ 94 (120)
T 2eno_A 17 TEEEINLTRGP-SGLGFNIVG-GTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN 94 (120)
T ss_dssp EEEEEEEECCS-SSCSEEEEC-CTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHH
T ss_pred ceEEEEEEECC-CCCCEEEec-ccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 34667777644 699999973 3322 24479999999999999999999999999999999999999999999986
Q ss_pred C
Q psy3490 84 N 84 (88)
Q Consensus 84 ~ 84 (88)
.
T Consensus 95 ~ 95 (120)
T 2eno_A 95 A 95 (120)
T ss_dssp H
T ss_pred C
Confidence 4
No 59
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.62 E-value=3.2e-14 Score=78.58 Aligned_cols=76 Identities=25% Similarity=0.321 Sum_probs=62.4
Q ss_pred CCcccEEEEEECCCC-CcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 5 NPVTSEIVVVPKAKG-EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 5 ~~~~~~~~~i~~~~~-~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
+|.....+++.+..+ .+|||++.++. ...+++|..+.++|||+++| |++||.|++|||.++.++++.++...++.
T Consensus 3 ~~~~~~~v~l~k~~~~~~~G~~~~~~~---~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~ 78 (91)
T 1m5z_A 3 TPVELHKVTLYKDSGMEDFGFSVADGL---LEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAE 78 (91)
T ss_dssp SCCEEEEEEEECCTTCSSSSEEEEECT---TSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred CCcceEEEEEEECCCCCCccEEEEecc---CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 345556777777655 48999997322 12469999999999999999 99999999999999999999999888875
Q ss_pred C
Q psy3490 84 N 84 (88)
Q Consensus 84 ~ 84 (88)
.
T Consensus 79 ~ 79 (91)
T 1m5z_A 79 S 79 (91)
T ss_dssp S
T ss_pred C
Confidence 4
No 60
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=99.61 E-value=8.7e-15 Score=79.97 Aligned_cols=70 Identities=23% Similarity=0.288 Sum_probs=58.4
Q ss_pred EEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 12 ~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+++.+. ..+|||++.+ +. ....+++|..+.+++||+++|.|++||.|++|||.++.++++.++..+++..
T Consensus 4 v~l~k~-~~g~G~~i~~-~~-~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 73 (85)
T 2i04_A 4 TKLRKS-SRGFGFTVVG-GD-EPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSI 73 (85)
T ss_dssp EEEECB-TTBSSEEEEE-CC-STTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred EEEEEC-CCCCCEEEEc-cc-CCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 445543 3499999973 22 2344699999999999999998999999999999999999999999999875
No 61
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.61 E-value=1.7e-14 Score=83.96 Aligned_cols=70 Identities=21% Similarity=0.336 Sum_probs=58.3
Q ss_pred EEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 12 ~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+++.+ ...+|||++. ++. ....+++|..|.+++||+++|+|++||.|++|||+++.++++.++..+|+..
T Consensus 23 v~l~~-~~~glG~~~~-~g~-~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 92 (123)
T 1ueq_A 23 TTLKK-SNMGFGFTII-GGD-EPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSV 92 (123)
T ss_dssp EEEEC-CTTSCSEEEE-CCS-SSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTS
T ss_pred EEEEe-CCCceeEEEe-ccc-CCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 44443 2349999997 332 2345699999999999999999999999999999999999999999999874
No 62
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=99.61 E-value=2.4e-14 Score=81.59 Aligned_cols=75 Identities=24% Similarity=0.349 Sum_probs=61.9
Q ss_pred EEEEEECCCCCcccEEEEeCCCCC----------CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHH
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGS----------MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQT 79 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~----------~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~ 79 (88)
+.+.+.+....+|||++.++.... ...+++|..+.++|||+++| |++||.|++|||.++.+++|.++..
T Consensus 9 ~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~ 87 (109)
T 1q3o_A 9 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVN 87 (109)
T ss_dssp EEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHH
T ss_pred EEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHH
Confidence 567777766679999997433211 12269999999999999999 9999999999999999999999999
Q ss_pred HHHhCC
Q psy3490 80 YIKVNH 85 (88)
Q Consensus 80 ~lk~~~ 85 (88)
+++...
T Consensus 88 ~l~~~~ 93 (109)
T 1q3o_A 88 MIRQGG 93 (109)
T ss_dssp HHHHTT
T ss_pred HHHhCC
Confidence 998653
No 63
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=99.61 E-value=1.7e-14 Score=79.58 Aligned_cols=65 Identities=22% Similarity=0.419 Sum_probs=56.2
Q ss_pred EEECC-CCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 13 VVPKA-KGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 13 ~i~~~-~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
++.+. ....|||.+.+ +++|.++.++|||+++|+|++||+|++|||.++.+++++++..+++++.
T Consensus 5 ~l~~~~~~~~~G~~~~~--------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~ 70 (88)
T 3e17_A 5 LLMKSRANEEYGLRLGS--------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR 70 (88)
T ss_dssp EEECBTTBCCCCEEEEE--------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTT
T ss_pred EEEeCCCCCCCCEEEeC--------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 34443 34489999851 4899999999999999999999999999999999999999999998765
No 64
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.60 E-value=4.3e-14 Score=77.98 Aligned_cols=71 Identities=27% Similarity=0.368 Sum_probs=60.2
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+.+++.+.. .+|||++.+ .. ...+++|..+.++|||+++| |++||.|++|||.++.+.+|+++..+++..
T Consensus 5 ~r~v~l~k~~-~g~G~~~~~-~~--~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 75 (90)
T 2he4_A 5 PRLCHLRKGP-QGYGFNLHS-DK--SRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 75 (90)
T ss_dssp CEEEEEECBT-TBCCEEEEE-CS--SSSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTS
T ss_pred cEEEEEEECC-CCccEEEEc-cC--CCCCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 3677787644 599999963 22 13469999999999999999 999999999999999999999999999875
No 65
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.60 E-value=2.8e-14 Score=83.25 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=62.8
Q ss_pred EEEEEECCCCCcccEEEEeCCCC-------CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWG-------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~-------~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
+.+.+.+...++|||++.++... ....+++|..+.++|||+++|+|++||.|++|||.++.++++.++..+++
T Consensus 26 ~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 105 (123)
T 2iwq_A 26 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR 105 (123)
T ss_dssp EEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred EEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 56777776667999999743211 11247999999999999999999999999999999999999999999998
Q ss_pred hCC
Q psy3490 83 VNH 85 (88)
Q Consensus 83 ~~~ 85 (88)
...
T Consensus 106 ~~~ 108 (123)
T 2iwq_A 106 KAG 108 (123)
T ss_dssp HCC
T ss_pred cCC
Confidence 754
No 66
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.60 E-value=8.8e-15 Score=80.31 Aligned_cols=72 Identities=26% Similarity=0.359 Sum_probs=59.8
Q ss_pred EEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 11 ~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.+++.++...+|||++.+ +.+ ...+++|..+.++|||+++| |++||.|++|||.++.+++++++..+++...
T Consensus 3 ~~~v~~~~~~~lG~~l~~-~~~-~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 74 (87)
T 2pa1_A 3 ALTVDVAGPAPWGFRITG-GRD-FHTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSP 74 (87)
T ss_dssp EEEEEECSSSCCSEEEEE-EGG-GTEEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCC
T ss_pred EEEEEECCCCccCEEEec-ccC-CCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 355666666699999973 222 23468999999999999998 9999999999999999999999999998753
No 67
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.60 E-value=2.7e-14 Score=82.05 Aligned_cols=74 Identities=27% Similarity=0.491 Sum_probs=62.8
Q ss_pred cccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 7 VTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 7 ~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+..+.+.+.+..+.+|||.+... ..+++|..+.+++||+++|.|++||.|++|||.++.++++.++..+++...
T Consensus 24 ~~~~~v~l~k~~~~~lG~~i~~~-----~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~ 97 (113)
T 1va8_A 24 ETVKIVRIEKARDIPLGATVRNE-----MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH 97 (113)
T ss_dssp EECEEEEEEECTTCCCCEEEEEC-----SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred CceEEEEEEeCCCCceeEEEEeC-----CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 34567888887766999999632 235999999999999999944999999999999999999999999998653
No 68
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=99.60 E-value=5.5e-15 Score=83.94 Aligned_cols=76 Identities=21% Similarity=0.386 Sum_probs=62.5
Q ss_pred ccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCG-QLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 8 ~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g-~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..+.+.+.+....+|||++.+ +.+ ...+++|..|.+++||+++| +|++||+|++|||.++.++++.+++.+++.+.
T Consensus 17 ~~~~v~l~~~~~~~~G~~~~g-g~~-~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~ 93 (107)
T 3nfk_A 17 NLVLIRMKPDENGRFGFNVKG-GYD-QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASC 93 (107)
T ss_dssp CCEEEEECCCTTSCCCEEEEE-EGG-GTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGG
T ss_pred CEEEEEEEcCCCCCCCEEEEc-cCC-CCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence 346666776665699999973 222 22358999999999999999 59999999999999999999999999998754
No 69
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=99.60 E-value=7.7e-15 Score=82.08 Aligned_cols=76 Identities=25% Similarity=0.256 Sum_probs=61.5
Q ss_pred CCcccEEEE--EECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 5 NPVTSEIVV--VPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 5 ~~~~~~~~~--i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
+++.++.++ +.+....+|||++.. ...+++|..+.++|||+++|+|++||.|++|||+++.++++.+++.+++
T Consensus 3 ~~~~~~~~~v~l~~~~~~glG~~~~~-----~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~ 77 (96)
T 2qkv_A 3 PRNSLEKFNVDLMKKAGKELGLSLSP-----NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFK 77 (96)
T ss_dssp CCCCCCCEEEEEECBTTBCCCEEEEE-----CSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred ChHHCceEEEEEEeCCCCCccEEEEe-----CCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence 455554444 444455699999863 2235999999999999999989999999999999999999999999988
Q ss_pred hCC
Q psy3490 83 VNH 85 (88)
Q Consensus 83 ~~~ 85 (88)
...
T Consensus 78 ~~~ 80 (96)
T 2qkv_A 78 GAN 80 (96)
T ss_dssp TCS
T ss_pred cCC
Confidence 754
No 70
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=99.60 E-value=3.7e-14 Score=80.01 Aligned_cols=74 Identities=27% Similarity=0.346 Sum_probs=61.8
Q ss_pred ccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 8 ~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..+.+++.+. +.+|||++.++.. ..+++|..+.++|||+++|+|++||.|++|||.++.+.++.+++..++.+.
T Consensus 11 ~~~~v~l~k~-~~glG~~~~~~~~---~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 84 (104)
T 3i4w_A 11 EPRRIVIHRG-STGLGFNIVGGEX---GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG 84 (104)
T ss_dssp SCEEEEEECB-TTBTSEEEEECC----CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred ccEEEEEEeC-CCccCEEEECCCC---CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 3466777765 4599999973321 346999999999999999999999999999999999999999999988654
No 71
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.60 E-value=4.3e-14 Score=82.13 Aligned_cols=82 Identities=27% Similarity=0.381 Sum_probs=65.2
Q ss_pred cCCCcccEEEEEECCCCC-cccEEEEeCCCC-CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490 3 HLNPVTSEIVVVPKAKGE-ILGVVIVESGWG-SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY 80 (88)
Q Consensus 3 ~~~~~~~~~~~i~~~~~~-~lG~~i~~~~~~-~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~ 80 (88)
|++++..+.+.+....+. +|||++...... ....+++|..|.++|||+++|+|++||.|++|||.++.+++++++..+
T Consensus 23 y~~~~~~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~ 102 (121)
T 2kom_A 23 YNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSL 102 (121)
T ss_dssp CCCCCSCEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHH
T ss_pred ccCccCCeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHH
Confidence 556666676666554444 999999732211 113469999999999999998899999999999999999999999999
Q ss_pred HHhC
Q psy3490 81 IKVN 84 (88)
Q Consensus 81 lk~~ 84 (88)
++..
T Consensus 103 l~~~ 106 (121)
T 2kom_A 103 LRST 106 (121)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 9874
No 72
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=99.60 E-value=1.9e-14 Score=80.13 Aligned_cols=72 Identities=25% Similarity=0.353 Sum_probs=57.8
Q ss_pred EEEECCCCCcccEEEEeCCC--CC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 12 VVVPKAKGEILGVVIVESGW--GS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 12 ~~i~~~~~~~lG~~i~~~~~--~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+++.+.++++|||++.++.. +. ...+++|..+.++|||++ | |++||.|++|||.++.++++.+++..++.+.
T Consensus 5 ~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 82 (95)
T 1mfg_A 5 IRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ 82 (95)
T ss_dssp EEEEEECSSSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHHHCC
T ss_pred EEEEECCCCCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhhcCC
Confidence 44555556699999984321 11 234799999999999999 6 9999999999999999999999999988653
No 73
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=99.60 E-value=1.1e-14 Score=83.99 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=64.0
Q ss_pred ccEEEEEECCCCCcccEEEEeCCCC-CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECC-CCCHHHHHHHHHhCC
Q psy3490 8 TSEIVVVPKAKGEILGVVIVESGWG-SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV-GLPLSTCQTYIKVNH 85 (88)
Q Consensus 8 ~~~~~~i~~~~~~~lG~~i~~~~~~-~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~-~~~~~~~~~~lk~~~ 85 (88)
..+.+.+.+..+.+|||++.++... ....+++|..+.++|||+++|+|++||.|++|||.++. ++++.+++.+++.+.
T Consensus 20 ~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~ 99 (117)
T 2o2t_A 20 HVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAK 99 (117)
T ss_dssp CEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCC
Confidence 3466778876677999999743221 12347999999999999999999999999999999998 999999999998654
No 74
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.60 E-value=7.7e-15 Score=84.41 Aligned_cols=81 Identities=35% Similarity=0.440 Sum_probs=65.7
Q ss_pred cCCCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 3 ~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
++.+...+.+.+.+. ..+|||++. ++.+....+++|..|.+++||+++|+|++||.|++|||.++.++++.++..+++
T Consensus 12 ~~~~~~~~~v~l~~~-~~glG~~l~-~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~ 89 (116)
T 2dm8_A 12 PIVPGQEMIIEISKG-RSGLGLSIV-GGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALR 89 (116)
T ss_dssp CCCTTSCEEEEEECC-SSCCCCCCB-CCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHH
T ss_pred ccCCCCEEEEEEEEC-CCcccEEEe-CCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 456666677777643 459999996 333333347999999999999999999999999999999999999999999998
Q ss_pred hCC
Q psy3490 83 VNH 85 (88)
Q Consensus 83 ~~~ 85 (88)
...
T Consensus 90 ~~~ 92 (116)
T 2dm8_A 90 QTP 92 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 653
No 75
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=99.59 E-value=2.4e-14 Score=82.02 Aligned_cols=75 Identities=27% Similarity=0.423 Sum_probs=60.1
Q ss_pred EEEEECCCC-CcccEEEEeC--CCCC--CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 11 IVVVPKAKG-EILGVVIVES--GWGS--MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 11 ~~~i~~~~~-~~lG~~i~~~--~~~~--~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.+++...++ .+|||++.+. +... ...+++|..+.++|||+++|+|++||.|++|||.++.++++.+++.+++.+.
T Consensus 5 ~~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g 84 (113)
T 2g5m_B 5 LFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK 84 (113)
T ss_dssp EEEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred EEEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence 344444344 4999999852 2221 2347999999999999999999999999999999999999999999998754
No 76
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.59 E-value=3.3e-14 Score=81.12 Aligned_cols=75 Identities=29% Similarity=0.414 Sum_probs=60.4
Q ss_pred EEEEEECCCCCcccEEEEeCCCCC-CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGS-MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~-~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..+++.+. ..+|||++.++.... ...+++|..+.++|||+++|+|++||.|++|||+++.++++.+++..++...
T Consensus 10 ~~v~l~~~-~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 85 (110)
T 1um1_A 10 FTVELERG-PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG 85 (110)
T ss_dssp EEEEEECC-TTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCC
T ss_pred EEEEEEEC-CCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 44445543 359999998432211 2457999999999999999999999999999999999999999999998753
No 77
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=99.59 E-value=5.8e-14 Score=79.65 Aligned_cols=75 Identities=25% Similarity=0.387 Sum_probs=60.2
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCC----------CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHH
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSM----------LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQ 78 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~----------~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~ 78 (88)
-+.+.+.+.. .+|||++.++..... .+.++|..+.++|||+++| |++||.|++|||.++.+++++++.
T Consensus 7 ~r~v~l~k~~-~g~G~~l~~~~~~~~~~~~~~~~~~~p~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~ 84 (107)
T 3qe1_A 7 PRVVRIVKSE-SGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVV 84 (107)
T ss_dssp CEEEEEECBT-TBTCEEEECCSSSCCCCEESSSSEESCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHH
T ss_pred cEEEEEEECC-CCCCEEEEcccccCCcceeccccccCCceEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHH
Confidence 3667777654 389999973311111 3345799999999999999 999999999999999999999999
Q ss_pred HHHHhCC
Q psy3490 79 TYIKVNH 85 (88)
Q Consensus 79 ~~lk~~~ 85 (88)
.+++.+.
T Consensus 85 ~~l~~~g 91 (107)
T 3qe1_A 85 DLIRAGE 91 (107)
T ss_dssp HHHHHCS
T ss_pred HHHHcCC
Confidence 9998653
No 78
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.6e-14 Score=78.60 Aligned_cols=73 Identities=34% Similarity=0.526 Sum_probs=60.9
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+++.+. ..+|||++. ++. ....+++|..+.+++||+++|.|++||.|++|||.++.++++.++..+++...
T Consensus 7 r~v~l~k~-~~glG~~l~-~~~-~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 79 (93)
T 2dkr_A 7 GVVELPKT-DEGLGFNIM-GGK-EQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQ 79 (93)
T ss_dssp CEEEEECC-TTCCCEEEE-CSS-SSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCC
T ss_pred EEEEEEeC-CCCccEEEe-ccc-CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 66777764 479999997 332 23346999999999999999669999999999999999999999999998654
No 79
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.59 E-value=7.8e-15 Score=80.82 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=59.1
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+++.+....+|||++.+ +.. ...+++|..+.++|||+++| |++||.|++|||.++.++++.++..+++...
T Consensus 3 ~~~~v~~~~~~~~G~~l~g-g~~-~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g 75 (89)
T 2q3g_A 3 DSFKVVLEGPAPWGFRLQG-GKD-FNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACG 75 (89)
T ss_dssp EEEEEEEESSSCCCEEEEE-EGG-GTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCT
T ss_pred cEEEEEEcCCCcccEEEEC-cCC-CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 3445555555699999973 222 23468999999999999999 9999999999999999999999999988653
No 80
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=99.59 E-value=1.9e-14 Score=80.61 Aligned_cols=72 Identities=17% Similarity=0.308 Sum_probs=58.5
Q ss_pred EEEEEECCCCC--cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 10 EIVVVPKAKGE--ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 10 ~~~~i~~~~~~--~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
+.+.+.+.+.. +|||++.... .....+++|..+.++|||+++| |+.||.|++|||.++.+++++++..++++
T Consensus 8 ~~v~i~k~~~~~~~~Gf~v~~~~-~~~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~~ 81 (94)
T 3kzd_A 8 HSIHIEKSDTAADTYGFSLSSVE-EDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ 81 (94)
T ss_dssp EEEEEEC------CCSEEEEEEC-SSSSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHS
T ss_pred eEEEEEeCCCCcCCcCEEEEecC-CCCcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Confidence 66788887643 8999997322 2234579999999999999998 99999999999999999999999998875
No 81
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=99.59 E-value=1.3e-14 Score=82.71 Aligned_cols=71 Identities=28% Similarity=0.322 Sum_probs=59.9
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.++.+.+..+.+|||++.+ ...+++|..+.++|||+++|+|++||.|++|||+++.++++.+++.+++...
T Consensus 4 ~~v~L~k~~~~glG~~i~~-----~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~ 74 (106)
T 2la8_A 4 FNVDLMKKAGKELGLSLSP-----NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN 74 (106)
T ss_dssp EEEEECCBSSSTTCCEEEE-----CSSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCB
T ss_pred EEEEEEeCCCCccCEEEEe-----CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCC
Confidence 3455665666699999963 2246999999999999999999999999999999999999999999988653
No 82
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=99.58 E-value=2e-14 Score=78.46 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=56.3
Q ss_pred EECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 14 VPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 14 i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+......+|||++. ++.+ ...+++|..+.++|||+++| |++||.|++|||.++.+.++.++...++...
T Consensus 5 v~l~~~~~~G~~l~-gg~~-~~~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 73 (85)
T 1rgw_A 5 VTLTGPGPWGFRLQ-GGKD-FNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSAS 73 (85)
T ss_dssp EEECCSSCCCEEEC-CCGG-GTSCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCS
T ss_pred EEEeCCCccCEEEE-eccC-CCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcCC
Confidence 33344569999996 2322 23458999999999999988 9999999999999999999999999987653
No 83
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.58 E-value=4.5e-14 Score=78.93 Aligned_cols=72 Identities=33% Similarity=0.553 Sum_probs=58.5
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+.+.+ .+.+|||++. +......+++|..+.+++||+++|+|++||.|++|||.++.++++.++..+++..
T Consensus 7 ~~v~l~~-~~~~lG~~i~--~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 78 (97)
T 1n7e_A 7 YTVELKR-YGGPLGITIS--GTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMA 78 (97)
T ss_dssp EEEEEEC-TTSCCCEEEE--CCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred EEEEEEe-CCCCcCEEEE--cccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4455543 3457999996 2223334699999999999999999999999999999999999999999999843
No 84
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=99.58 E-value=3.3e-14 Score=79.03 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=60.6
Q ss_pred cccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 7 VTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 7 ~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
...+.+.+.+ ...+|||++.. +.. ..+++|..+.++|||+++| |++||.|++|||.++.+++|+++..+++.+.
T Consensus 4 ~~~r~v~l~~-~~~~~G~~l~~-~~~--~~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 77 (95)
T 3r68_A 4 HQPRVVVIKK-GSNGYGFYLRA-GPE--QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGG 77 (95)
T ss_dssp CCCEEEEEEC-BTTBCSCEEEE-C----CCSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred CCcEEEEEec-CCCcccEEEEe-cCC--CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 3446677775 34699999963 221 2369999999999999999 9999999999999999999999999998753
No 85
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=99.58 E-value=5.8e-14 Score=79.13 Aligned_cols=75 Identities=24% Similarity=0.357 Sum_probs=59.9
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCC--------CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSM--------LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI 81 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~--------~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~l 81 (88)
+.+.+.+.....|||++.+ ..+.. ..+++|..+.++|||+++|+|++||.|++|||.++.++++.++..++
T Consensus 6 ~~v~l~~~~~~~lG~~~~~-~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l 84 (103)
T 2fcf_A 6 RRVELWREPSKSLGISIVG-GRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAI 84 (103)
T ss_dssp EEEEECCCC-CCCCEEEEC-CCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEeCCCCceeEEEEc-cCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4566777666799999973 22211 24699999999999999999999999999999999999999999999
Q ss_pred HhCC
Q psy3490 82 KVNH 85 (88)
Q Consensus 82 k~~~ 85 (88)
+...
T Consensus 85 ~~~~ 88 (103)
T 2fcf_A 85 RKAG 88 (103)
T ss_dssp HTCC
T ss_pred HhCC
Confidence 8754
No 86
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=99.58 E-value=5.5e-14 Score=79.50 Aligned_cols=75 Identities=25% Similarity=0.313 Sum_probs=62.2
Q ss_pred EEEEEECCCCCcccEEEEeCCC-----CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGW-----GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~-----~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+.+.+..+.+|||.+.+... .....+++|..+.+++||+++| |++||.|++|||.++.++++.++..+++..
T Consensus 17 ~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 95 (104)
T 2z17_A 17 KLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRSS 95 (104)
T ss_dssp CEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Confidence 5566887767799999974211 1123469999999999999999 999999999999999999999999999875
Q ss_pred C
Q psy3490 85 H 85 (88)
Q Consensus 85 ~ 85 (88)
.
T Consensus 96 ~ 96 (104)
T 2z17_A 96 G 96 (104)
T ss_dssp T
T ss_pred C
Confidence 3
No 87
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.58 E-value=7.6e-14 Score=86.85 Aligned_cols=81 Identities=19% Similarity=0.324 Sum_probs=66.0
Q ss_pred cCCCcccEEEEEECCCCCcccEEEEeCCCCCCC-CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCC--CCHHHHHH
Q psy3490 3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSML-PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG--LPLSTCQT 79 (88)
Q Consensus 3 ~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~-~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~--~~~~~~~~ 79 (88)
++.+.....+++.+ .+.+|||++. ++.+... .+++|..+.++|||+++|+|+.||+|++|||.++.+ +++.+++.
T Consensus 13 ~~~~~~~~~v~~~~-~~~~lG~~i~-~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~ 90 (206)
T 3r0h_A 13 EIKPNKKILIELKV-EKKPMGVIVC-GGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQ 90 (206)
T ss_dssp CCCTTSCEEEEEEC-TTSCCCEEEE-CCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHH
T ss_pred CCCCCCEEEEEEEe-CCCCcCEEEe-cccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHH
Confidence 34455556667775 4579999998 4443333 479999999999999999999999999999999999 99999999
Q ss_pred HHHhCC
Q psy3490 80 YIKVNH 85 (88)
Q Consensus 80 ~lk~~~ 85 (88)
+++...
T Consensus 91 ~~~~~~ 96 (206)
T 3r0h_A 91 LFHTTY 96 (206)
T ss_dssp HHHSCC
T ss_pred HHHhcC
Confidence 998754
No 88
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=99.58 E-value=2.9e-14 Score=80.82 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=61.2
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+.+.+..+.+|||.+.. . ....+++|..+.++|||+++| |++||.|++|||.++.+++|.++..+++.+.
T Consensus 3 r~v~l~~~~~~~~G~~l~~-~--~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g 74 (106)
T 3ngh_A 3 RESKLSKQEGQNYGFFLRI-E--KDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSG 74 (106)
T ss_dssp EEEEEECCTTCCCCCEEEC-C--TTCCSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHTT
T ss_pred EEEEEEeCCCCeeCEEEEE-E--eCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 5678888877899999862 2 223458999999999999999 9999999999999999999999999997543
No 89
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.57 E-value=2.2e-14 Score=78.78 Aligned_cols=69 Identities=23% Similarity=0.336 Sum_probs=56.8
Q ss_pred EEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 13 VVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 13 ~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
++..+...+|||++.+ +.+ ...+++|..+.++|||+++| |++||.|++|||.++.++++.++..+++..
T Consensus 6 ~v~l~~~~~~G~~l~~-g~~-~~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~ 74 (88)
T 2uzc_A 6 SVSLVGPAPWGFRLQG-GKD-FNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGC 74 (88)
T ss_dssp EEEEESSSCCCEEEEE-EGG-GTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred EEEEcCCCcccEEEEC-cCC-CCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 3344445699999973 322 23458999999999999999 999999999999999999999999998865
No 90
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.57 E-value=5e-14 Score=78.55 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=60.5
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+.+.+.+.. .+|||++..........+++|..+.++|||+++| |++||.|++|||.++.++++.++..+++..
T Consensus 4 ~r~v~l~k~~-~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 77 (96)
T 2v90_A 4 PRCLHLEKGP-QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQ 77 (96)
T ss_dssp CEEEEEECBT-TBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred CEEEEEEeCC-CcccEEEEeccCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 3667777644 4999999632111223369999999999999999 999999999999999999999999999864
No 91
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.9e-14 Score=81.35 Aligned_cols=73 Identities=25% Similarity=0.387 Sum_probs=58.8
Q ss_pred EEEEEECCCCCcccEEEEeCCCCC-CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGS-MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~-~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
..+.+.+. ..+|||.+.+ +... ...+++|..+.+++||+++|+|++||.|++|||.++.++++.+++.+++..
T Consensus 13 ~~v~l~~~-~~g~G~~l~~-~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 86 (104)
T 2djt_A 13 FSVELVRG-YAGFGLTLGG-GRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAG 86 (104)
T ss_dssp EEEEEECC-SSSCCEEEEC-CEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHT
T ss_pred EEEEEEeC-CCCccEEEEe-ccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 44555543 3599999972 2222 134689999999999999998999999999999999999999999998864
No 92
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.57 E-value=2.8e-14 Score=82.29 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=58.8
Q ss_pred EEEEEECCCCCcccEEEEeCCCCC-----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGS-----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~-----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+.+.+..+.+|||++. ++.+. ...+++|..+.+++||+ ++ |++||.|++|||.++.++++.+++.+++.+
T Consensus 16 ~~v~l~k~~~~glG~~i~-gg~~~~~~~~~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 92 (117)
T 2csj_A 16 YTVTLQKDSKRGFGIAVS-GGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLRKS 92 (117)
T ss_dssp EEEEEECCSSSTTCEEEE-CCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHHHS
T ss_pred EEEEEEECCCCccCEEEe-CCcCCccccCCCCCEEEEEECCCCccc-cc-CCCCCEEEEECCEECCCcCHHHHHHHHhcC
Confidence 345566555569999998 34332 24469999999999997 55 999999999999999999999999999875
Q ss_pred C
Q psy3490 85 H 85 (88)
Q Consensus 85 ~ 85 (88)
.
T Consensus 93 ~ 93 (117)
T 2csj_A 93 G 93 (117)
T ss_dssp C
T ss_pred C
Confidence 4
No 93
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.56 E-value=3.8e-14 Score=82.93 Aligned_cols=79 Identities=24% Similarity=0.337 Sum_probs=61.9
Q ss_pred CcccEEEEEEC--CCCCcccEEEEeCCCCC---CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490 6 PVTSEIVVVPK--AKGEILGVVIVESGWGS---MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY 80 (88)
Q Consensus 6 ~~~~~~~~i~~--~~~~~lG~~i~~~~~~~---~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~ 80 (88)
+...+.+.+.. ....+|||++.++.... ...+++|..+.+++||+++|+|++||.|++|||.++.++++.++..+
T Consensus 11 ~~~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~ 90 (129)
T 2dmz_A 11 SSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEV 90 (129)
T ss_dssp SCCEEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHH
T ss_pred CCCCcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 33444444444 44559999997432211 23479999999999999999999999999999999999999999999
Q ss_pred HHhC
Q psy3490 81 IKVN 84 (88)
Q Consensus 81 lk~~ 84 (88)
++..
T Consensus 91 l~~~ 94 (129)
T 2dmz_A 91 LRNA 94 (129)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 9863
No 94
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.56 E-value=2e-15 Score=85.12 Aligned_cols=80 Identities=26% Similarity=0.324 Sum_probs=63.2
Q ss_pred cCCCcccEEEEEECCCC-CcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy3490 3 HLNPVTSEIVVVPKAKG-EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI 81 (88)
Q Consensus 3 ~~~~~~~~~~~i~~~~~-~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~l 81 (88)
|++++.++.+.+...++ .+|||++.++ .+ ...+++|..+.+++||+++|.|++||.|++|||.++.++++.++..++
T Consensus 4 ~~~~~~~~~~~v~l~~~~~g~G~~~~~~-~~-~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~ 81 (103)
T 1wfv_A 4 GSSGQDFDYFTVDMEKGAKGFGFSIRGG-RE-YKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELI 81 (103)
T ss_dssp CCSCCCSCCEECCEECCTTSSSBCCEEE-TT-TTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred CCCccCceEEEEEEecCCCcCCEEEecc-cc-CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 56677666555554333 4899999632 22 223699999999999999998999999999999999999999999988
Q ss_pred HhC
Q psy3490 82 KVN 84 (88)
Q Consensus 82 k~~ 84 (88)
+..
T Consensus 82 ~~~ 84 (103)
T 1wfv_A 82 KSG 84 (103)
T ss_dssp HHH
T ss_pred HcC
Confidence 743
No 95
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=99.56 E-value=1.7e-14 Score=81.41 Aligned_cols=72 Identities=25% Similarity=0.353 Sum_probs=57.6
Q ss_pred EEEECCCCCcccEEEEeCCC--CC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 12 VVVPKAKGEILGVVIVESGW--GS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 12 ~~i~~~~~~~lG~~i~~~~~--~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+++.+.++++|||++.++.. +. ...+++|..+.++|||++ | |++||.|++|||.++.++++.+++..++.+.
T Consensus 13 ~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g 90 (103)
T 1n7t_A 13 IRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ 90 (103)
T ss_dssp EEEEEECSSCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHHHHHHHCC
T ss_pred EEEEEccCCCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHHHHhhcCC
Confidence 33444445699999984321 11 344799999999999999 6 9999999999999999999999999998654
No 96
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=99.56 E-value=9.3e-15 Score=94.93 Aligned_cols=74 Identities=27% Similarity=0.293 Sum_probs=62.4
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+++.+..+.+|||+|.+ +.+ ...+++|..|.+++||++++.|++||+|++|||+++.+++|.+++.+++..+
T Consensus 79 r~V~L~k~~~~glGf~I~g-g~d-~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g 152 (263)
T 1z87_A 79 RRVTVRKADAGGLGISIKG-GRE-NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG 152 (263)
T ss_dssp EEECCCTTTTCCCCCEEEE-ETT-TTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCC
T ss_pred EEEEEEeCCCCCEeEEEee-ccC-CCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCC
Confidence 6677777666799999983 332 2346999999999999995459999999999999999999999999998764
No 97
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=99.56 E-value=2.1e-14 Score=84.25 Aligned_cols=70 Identities=23% Similarity=0.283 Sum_probs=58.4
Q ss_pred EEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 12 ~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+++.+ ...+|||++.+ +. ....+++|..+.++|+|+++|+|++||.|++|||.++.+++|.+++.+++.+
T Consensus 22 v~l~~-~~~g~G~~i~g-~~-~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~ 91 (129)
T 2kpk_A 22 TKLRK-SSRGFGFTVVG-GD-EPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSI 91 (129)
T ss_dssp EEEEE-CSSCCSEEEEE-EE-ETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHS
T ss_pred EEEEE-CCCcccEEEeC-cc-CCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 44554 33499999973 22 2334699999999999999999999999999999999999999999999876
No 98
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.56 E-value=7.2e-14 Score=80.23 Aligned_cols=75 Identities=29% Similarity=0.388 Sum_probs=61.0
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCC--CC---CcEEEEEECCCChhhh-hCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGS--ML---PTVVIANLAPAGAAAR-CGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~--~~---~~i~I~~v~~g~~a~~-~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
.+.+.+.+....+|||++.++.... .. .+++|..|.+++||++ +| |++||.|++|||.++.++++.++..+++
T Consensus 11 ~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~~~~~~~~l~ 89 (114)
T 1uew_A 11 TSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVNGQSIINMPHADIVKLIK 89 (114)
T ss_dssp CEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEETTBCTTTSCHHHHHHHHH
T ss_pred ceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 3668788777779999997432111 11 1479999999999999 66 9999999999999999999999999998
Q ss_pred hC
Q psy3490 83 VN 84 (88)
Q Consensus 83 ~~ 84 (88)
..
T Consensus 90 ~~ 91 (114)
T 1uew_A 90 DA 91 (114)
T ss_dssp HT
T ss_pred cC
Confidence 63
No 99
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.55 E-value=3.2e-14 Score=80.06 Aligned_cols=78 Identities=26% Similarity=0.303 Sum_probs=62.5
Q ss_pred CCcccEEEEEECCC-CCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 5 NPVTSEIVVVPKAK-GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 5 ~~~~~~~~~i~~~~-~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.+..++.+.+.+.. ..+|||++.+. . ....+++|..|.+++||+++| |++||.|++|||.++.++.+.+++..++.
T Consensus 5 ~~~~~~~v~l~~~~~~~~lG~~~~~~-~-~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~ 81 (101)
T 1uez_A 5 SSGEVRLVSLRRAKAHEGLGFSIRGG-S-EHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKG 81 (101)
T ss_dssp CSCCCEEECCCCCCTTTCSSEEEEEC-T-TTTCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSS
T ss_pred CCCccEEEEEEECCCCCcccEEEeCC-C-CCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcC
Confidence 45666777777644 34999999732 2 223469999999999999999 99999999999999999999888887765
Q ss_pred CC
Q psy3490 84 NH 85 (88)
Q Consensus 84 ~~ 85 (88)
..
T Consensus 82 ~~ 83 (101)
T 1uez_A 82 SK 83 (101)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 100
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.55 E-value=1.5e-14 Score=83.62 Aligned_cols=73 Identities=22% Similarity=0.423 Sum_probs=60.2
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhh-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~-g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+.+.+....+|||++.+ +.+ ...+++|..|.++|||+++ +.|++||.|++|||.++.+++|.+++.+++..
T Consensus 17 ~~v~l~k~~~~~~G~~l~g-g~~-~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~ 90 (119)
T 2cs5_A 17 VLIRMKPDENGRFGFNVKG-GYD-QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS 90 (119)
T ss_dssp EEEEECCCSSSCCSEEEEE-EGG-GTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCcCEEEec-ccC-CCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence 5566776555589999973 322 2335999999999999998 34999999999999999999999999999865
No 101
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=81.33 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=64.5
Q ss_pred CCCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 4 LNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 4 ~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
..+.+++.+.+.+....+|||++.+ +.. ...+++|..|.+++||+++|.|++||.|++|||.++.+. +.+++..++.
T Consensus 5 ~~~~~~~~~~v~~~~~~~~G~~~~g-g~~-~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~ 81 (100)
T 2edp_A 5 SSGGSFQYVPVQLQGGAPWGFTLKG-GLE-HCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKG 81 (100)
T ss_dssp CCCCCCEEEEEECCSCSCCCCCEEE-EGG-GTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHT
T ss_pred CCCCCcEEEEEEECCCCCcCEEEec-cCC-CCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHh
Confidence 4567778888988766699999973 222 223589999999999999944999999999999999987 8889999886
Q ss_pred CC
Q psy3490 84 NH 85 (88)
Q Consensus 84 ~~ 85 (88)
..
T Consensus 82 ~~ 83 (100)
T 2edp_A 82 SF 83 (100)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 102
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.55 E-value=1.6e-13 Score=84.45 Aligned_cols=77 Identities=27% Similarity=0.402 Sum_probs=63.9
Q ss_pred cccEEEEEECCCCCcccEEEEeCCCCCC----CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 7 VTSEIVVVPKAKGEILGVVIVESGWGSM----LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 7 ~~~~~~~i~~~~~~~lG~~i~~~~~~~~----~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
...+++++.+. +.+|||++. ++.+.+ ..+++|..+.++|||+++|+|++||+|++|||.++.++++.+++.+++
T Consensus 4 ~~~~~v~l~~~-~~~lG~~i~-~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~ 81 (196)
T 3gsl_A 4 MEYEEITLERG-NSGLGFSIA-GGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 81 (196)
T ss_dssp EEEEEEEEECB-TTBSSEEEE-CCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred cEEEEEEEEEC-CCCCCEEEE-cccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 34567777764 568999998 343332 457999999999999999999999999999999999999999999888
Q ss_pred hCC
Q psy3490 83 VNH 85 (88)
Q Consensus 83 ~~~ 85 (88)
...
T Consensus 82 ~~g 84 (196)
T 3gsl_A 82 EAG 84 (196)
T ss_dssp TSC
T ss_pred hCC
Confidence 654
No 103
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=99.55 E-value=3.6e-15 Score=101.15 Aligned_cols=82 Identities=59% Similarity=0.938 Sum_probs=70.2
Q ss_pred cCCCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 3 ~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
+.+++..+.+.+.+.++++|||++.+...+...++++|..+.++|||+++|+|++||+|++|||.++.++++.+++.+++
T Consensus 199 ~~~~~~~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~ 278 (388)
T 3suz_A 199 FSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIK 278 (388)
T ss_dssp TCCSSCCEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTT
T ss_pred hcccccceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHH
Confidence 46777889999998888899999974333444556899999999999999999999999999999999999999999998
Q ss_pred hC
Q psy3490 83 VN 84 (88)
Q Consensus 83 ~~ 84 (88)
..
T Consensus 279 ~~ 280 (388)
T 3suz_A 279 GL 280 (388)
T ss_dssp TC
T ss_pred hc
Confidence 75
No 104
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.54 E-value=1.2e-13 Score=80.25 Aligned_cols=75 Identities=21% Similarity=0.405 Sum_probs=60.9
Q ss_pred EEEEEECCCCCcccEEEEeCCC--CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGW--GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~--~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+.+.+....+|||++.++.. .....+++|..+.+++||+++|.|++||.|++|||+++.+++++++..+++..
T Consensus 17 ~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 93 (122)
T 1v5q_A 17 TEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS 93 (122)
T ss_dssp EEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHH
T ss_pred EEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 4566666555799999973311 11234589999999999999988999999999999999999999999999864
No 105
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.54 E-value=6e-14 Score=79.79 Aligned_cols=78 Identities=24% Similarity=0.303 Sum_probs=61.8
Q ss_pred cccEEEEEECCCCCcccEEEE-----eCCCC-CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490 7 VTSEIVVVPKAKGEILGVVIV-----ESGWG-SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY 80 (88)
Q Consensus 7 ~~~~~~~i~~~~~~~lG~~i~-----~~~~~-~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~ 80 (88)
...+.+++.+. +.+|||++. ++... ....+++|..+.++|||+++|+|++||.|++|||.++.++++.+++.+
T Consensus 8 ~~~~~v~l~k~-~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~ 86 (108)
T 1q7x_A 8 GDIFEVELAKN-DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVET 86 (108)
T ss_dssp SSEEEEEEESS-SCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHH
T ss_pred CcEEEEEEEEC-CCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 33455666653 469999995 22111 124579999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q psy3490 81 IKVNH 85 (88)
Q Consensus 81 lk~~~ 85 (88)
++.+.
T Consensus 87 ~~~~g 91 (108)
T 1q7x_A 87 LRNTG 91 (108)
T ss_dssp HHHTT
T ss_pred HHcCC
Confidence 98753
No 106
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.54 E-value=1.9e-14 Score=79.61 Aligned_cols=70 Identities=26% Similarity=0.359 Sum_probs=57.9
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+++.+..+ +|||++. +. ....+++|..+.++|||+++| |++||.|++|||.++.+++++++..+++..
T Consensus 5 r~v~l~k~~~-~~G~~l~--~~-~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 74 (91)
T 2vsp_A 5 KLCRLAKGEN-GYGFHLN--AI-RGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSS 74 (91)
T ss_dssp EEEEEECBTT-BTSCCCB--CC-TTCSCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTS
T ss_pred EEEEEEeCCC-cccEEEE--ec-cCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 6677876543 8999995 21 223458999999999999999 999999999999999999999999999864
No 107
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.54 E-value=1.7e-13 Score=77.34 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=53.9
Q ss_pred cccEEEEeCCCC----------CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 21 ILGVVIVESGWG----------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 21 ~lG~~i~~~~~~----------~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+|||++.++... ....+++|..+.++|||+++| |++||.|++|||.++.+.+|+++...++..
T Consensus 20 ~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 92 (104)
T 3sfj_A 20 ILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKR 92 (104)
T ss_dssp ECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHTCT
T ss_pred cccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 799999833221 224479999999999999999 999999999999999999999999999754
No 108
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.54 E-value=3.5e-13 Score=75.34 Aligned_cols=70 Identities=23% Similarity=0.334 Sum_probs=58.5
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+.+.+. ..+|||++.. .. ...+++|..+.++|||+++| |++||.|++|||+++.++++.++..+++..
T Consensus 11 ~~~~l~~~-~~g~G~~~~~-~~--~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 80 (98)
T 2jxo_A 11 RLCTMKKG-PSGYGFNLHS-DK--SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAG 80 (98)
T ss_dssp EEEEEECT-TTCCCEEEEC-CC--SSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred EEEEEEeC-CCcccEEEEe-cC--CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 55666653 3599999962 22 23369999999999999999 999999999999999999999999999875
No 109
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=99.53 E-value=2.6e-13 Score=76.93 Aligned_cols=73 Identities=22% Similarity=0.283 Sum_probs=59.4
Q ss_pred EEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+++.+..+.+|||++.++.... ...+++|..+.++|||+ +| |++||.|++|||.++.+.++.+++..++..
T Consensus 9 ~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 85 (107)
T 2h2b_A 9 HTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHAFAVQQLRKS 85 (107)
T ss_dssp EEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred EEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHHHHHHHhhCC
Confidence 567788776679999998432211 23479999999999999 66 999999999999999999999988877754
No 110
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.6e-13 Score=77.04 Aligned_cols=72 Identities=25% Similarity=0.372 Sum_probs=59.9
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+++.+.....|||++.+ .. ....+++|..+.+++||+++| |++||.|++|||.++.+.++.+++..++..
T Consensus 12 ~~v~l~~~~~~~lG~~~~~-~~-~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~ 83 (100)
T 2eeh_A 12 HSVRVEKSPAGRLGFSVRG-GS-EHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTSS 83 (100)
T ss_dssp CCEEECCCSSSSCSEEEEC-CT-TTTCCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHSC
T ss_pred EEEEEEECCCCCccEEEEc-cc-cCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcCC
Confidence 5567776666689999973 22 223469999999999999999 999999999999999999999999998764
No 111
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=99.53 E-value=2.7e-13 Score=75.31 Aligned_cols=74 Identities=24% Similarity=0.312 Sum_probs=57.3
Q ss_pred EEEEECCC-CCcccEEEEeCCCC--CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 11 IVVVPKAK-GEILGVVIVESGWG--SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 11 ~~~i~~~~-~~~lG~~i~~~~~~--~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+++...+ ..+|||++.+.... ....+++|..+.+++||+++|+|++||.|++|||.++.++++.++..+++..
T Consensus 5 ~~~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 81 (97)
T 2iwn_A 5 TFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 81 (97)
T ss_dssp EEEEEEECBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTC
T ss_pred EEEEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 33343333 34999999732111 1234699999999999999988999999999999999999999999988764
No 112
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.52 E-value=1.2e-13 Score=76.34 Aligned_cols=68 Identities=25% Similarity=0.299 Sum_probs=56.2
Q ss_pred EECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 14 VPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 14 i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+......+|||++.+ +. ....+++|..+.++|||+++| |++||.|++|||.++.+..+.++..+++..
T Consensus 7 v~~~~~~~~G~~l~~-~~-~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 74 (91)
T 2pkt_A 7 IDLQGPGPWGFRLVG-GK-DFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGC 74 (91)
T ss_dssp EEEESSSCCSEEEEE-EG-GGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred EEECCCCCCCEEEEc-cC-CCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 333445699999973 22 222468999999999999999 999999999999999999999999998863
No 113
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=99.52 E-value=2.9e-13 Score=74.81 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=57.8
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.+.+++.+. ..+|||.+. +. .+++|..+.++|||+++| |+.||.|++|||.++.++++.++..+++...
T Consensus 4 ~r~v~l~~~-~~g~G~~l~--~~----~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~ 72 (91)
T 2f5y_A 4 YRQITIPRG-KDGFGFTIC--CD----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCP 72 (91)
T ss_dssp EEEEEEECB-TTBTSEEEE--CS----SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCS
T ss_pred eEEEEEEeC-CCCccEEEe--cC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 366777753 358999995 21 238999999999999999 9999999999999999999999999998643
No 114
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.52 E-value=3.4e-13 Score=75.12 Aligned_cols=71 Identities=24% Similarity=0.393 Sum_probs=57.1
Q ss_pred EEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 12 VVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 12 ~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+.+. ..+|||++.++.... ...+++|..+.++|||+++| |++||.|++|||.++.+.++.+++..++..
T Consensus 7 v~~~~~-~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~ 81 (97)
T 2w4f_A 7 LTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGA 81 (97)
T ss_dssp EEEECB-TTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred EEEEeC-CCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCC
Confidence 445543 459999997433211 23579999999999999999 999999999999999999999888887654
No 115
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.51 E-value=8e-13 Score=75.29 Aligned_cols=65 Identities=26% Similarity=0.398 Sum_probs=54.6
Q ss_pred CCcccEEEEeCCCC----CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 19 GEILGVVIVESGWG----SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 19 ~~~lG~~i~~~~~~----~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
..+|||++.++... ....+++|..|.+++||+++| |++||.|++|||+++.+.++.+++..++..
T Consensus 25 ~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~ 93 (110)
T 1x5q_A 25 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGA 93 (110)
T ss_dssp SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred CCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHhhCC
Confidence 45999999743221 123579999999999999999 999999999999999999999998888754
No 116
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.51 E-value=2.8e-13 Score=77.33 Aligned_cols=71 Identities=30% Similarity=0.473 Sum_probs=59.2
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+.+.+.+ .+.+|||.+. ++. ..+++|..+.+++||+++|+|++||.|++|||.++.++++.+++.+++.+
T Consensus 16 ~~~v~l~~-~~~~lG~~l~-~~~---~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 86 (111)
T 2dlu_A 16 VEEVELIN-DGSGLGFGIV-GGK---TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNC 86 (111)
T ss_dssp EEEEEEEC-CSSCCCEEEE-CCS---SSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHH
T ss_pred eEEEEEEe-CCCccCEEEe-ccC---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 35566664 3469999996 222 23599999999999999999999999999999999999999999999754
No 117
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=99.50 E-value=1.2e-13 Score=85.69 Aligned_cols=73 Identities=25% Similarity=0.375 Sum_probs=62.4
Q ss_pred ccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 8 ~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
..+.+.+.+..+.+|||++.+ +. ....+++|..|.++|||+++| |++||.|++|||.++.++++.+++.+++.
T Consensus 84 ~~~~v~l~k~~~~~lG~~i~~-~~-~~~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~ 156 (192)
T 3k1r_A 84 KLKEVRLDRLHPEGLGLSVRG-GL-EFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT 156 (192)
T ss_dssp SCEEEEEETTSTTCCCEEEEE-EG-GGTEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS
T ss_pred ceEEEEEEeCCCCceeEEEEc-cc-ccCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC
Confidence 346788888767799999973 22 123469999999999999999 99999999999999999999999999986
No 118
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.7e-13 Score=76.19 Aligned_cols=65 Identities=26% Similarity=0.234 Sum_probs=54.9
Q ss_pred CCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 17 AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 17 ~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
....+|||++. ++.+ ...+++|..+.+++||+++| |++||.|++|||.++.++++.++...++..
T Consensus 15 ~~~~~~G~~l~-gg~~-~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~ 79 (94)
T 2eeg_A 15 RGPSPWGFRLV-GGRD-FSAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGC 79 (94)
T ss_dssp CCSSCCSCCEE-CCTT-TTSCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTC
T ss_pred eCCCccCEEEE-CccC-CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 44469999997 3332 23458999999999999998 999999999999999999999999888764
No 119
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=99.50 E-value=5.3e-13 Score=76.99 Aligned_cols=74 Identities=27% Similarity=0.341 Sum_probs=60.8
Q ss_pred ccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 8 ~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..+.+.+.+.. .+|||++.++. ...+++|..+.++|||+++|.|++||.|++|||.++.++++.+++..++...
T Consensus 14 ~~~~v~l~k~~-~glG~~l~~~~---~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 87 (119)
T 1tp5_A 14 EPRRIVIHRGS-TGLGFNIVGGE---DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG 87 (119)
T ss_dssp SCEEEEEECTT-SCCCEEEEECG---GGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred ccEEEEEEECC-CCccEEEecCC---CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 34667777643 58999997322 1246999999999999999989999999999999999999999988887654
No 120
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.50 E-value=6.9e-13 Score=73.52 Aligned_cols=66 Identities=27% Similarity=0.473 Sum_probs=55.0
Q ss_pred EEEEEECCC-CCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAK-GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~-~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+.+.+.+ ..+|||.+. ++ +|..|.++|||+++| |++||.|++|||.++.+.++.++..+++.+.
T Consensus 13 ~~~~i~~~~~~~~lG~~~~-~G--------~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g 79 (90)
T 1y7n_A 13 TTVLIRRPDLRYQLGFSVQ-NG--------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAV 79 (90)
T ss_dssp EEEEEEESSTTSCCCEEEE-TT--------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCC
T ss_pred ceEEEEeCCCccccCeEec-CC--------EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 444455444 349999984 21 899999999999999 9999999999999999999999999998653
No 121
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5e-14 Score=81.33 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=64.1
Q ss_pred cCCCcccEEEEEECCCCC--cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490 3 HLNPVTSEIVVVPKAKGE--ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY 80 (88)
Q Consensus 3 ~~~~~~~~~~~i~~~~~~--~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~ 80 (88)
.+.|...+.+.+.+.... +|||++.. .......+++|..|.+++||+++| |++||.|++|||.++.++++.++..+
T Consensus 10 e~~~~~~~~v~l~k~~~~~~~~G~~v~~-~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~ 87 (114)
T 2d8i_A 10 EICPKVTQSIHIEKSDTAADTYGFSLSS-VEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDF 87 (114)
T ss_dssp CSSCCEEEEEEEECSCTTTCCCCCEEEE-EEETTEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHH
T ss_pred EeccCceEEEEEEeCCCCccccCEEEEe-cCcCCcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHH
Confidence 455666778888876653 79999963 211122469999999999999999 99999999999999999999999998
Q ss_pred HHh
Q psy3490 81 IKV 83 (88)
Q Consensus 81 lk~ 83 (88)
++.
T Consensus 88 l~~ 90 (114)
T 2d8i_A 88 LSQ 90 (114)
T ss_dssp HTS
T ss_pred HhC
Confidence 875
No 122
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=78.39 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=59.6
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+.+.+.+ .+.+|||++.. . ....+++|..+.++|||+++| |++||.|++|||.++.++++.++...++.+
T Consensus 9 ~r~v~l~k-~~~~~G~~l~~-~--~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 79 (106)
T 2eei_A 9 PRLCYLVK-EGGSYGFSLKT-V--QGKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKS 79 (106)
T ss_dssp SEEEEEEC-CSSSCSCCEEC-C--SSCCSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHH
T ss_pred CEEEEEEE-CCCCCCEEEEe-c--cCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 36777776 45699999962 2 223468999999999999999 999999999999999999999999988754
No 123
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.49 E-value=5.3e-14 Score=79.44 Aligned_cols=69 Identities=23% Similarity=0.347 Sum_probs=56.2
Q ss_pred EECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 14 VPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 14 i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+......+|||++.+ +.+ ...+++|..+.++|||+++| |++||.|++|||.++.++++.++...++...
T Consensus 9 v~l~~~~~~G~~l~g-g~~-~~~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g 77 (103)
T 1wf7_A 9 VSLVGPAPWGFRLQG-GKD-FNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACT 77 (103)
T ss_dssp EEEESSSCCSCCEEE-ETT-TTEEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCS
T ss_pred EEEeCCCccCEEEec-ccc-CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 333345699999973 332 23358999999999999999 9999999999999999999999998887653
No 124
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.49 E-value=2.5e-13 Score=76.46 Aligned_cols=71 Identities=25% Similarity=0.390 Sum_probs=59.3
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+.+++.+. ..+|||++.. . ....+++|..+.++|||+++| |++||.|++|||.++.++++.++...++..
T Consensus 7 ~r~v~l~k~-~~g~G~~l~~-~--~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 77 (102)
T 2d90_A 7 GRVVVIKKG-SNGYGFYLRA-G--PEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKG 77 (102)
T ss_dssp SEEEEEECC-SSSSSCEEEE-C--SSSSSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHHHS
T ss_pred CEEEEEeeC-CCCccEEEEe-e--cCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 367777764 3599999963 2 123469999999999999999 999999999999999999999999998764
No 125
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.48 E-value=8.8e-13 Score=81.87 Aligned_cols=74 Identities=31% Similarity=0.436 Sum_probs=61.7
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+.+.+..+.+|||++. ++... ..+++|..+.++|||++++.|++||.|++|||.++.+++|.++..+++...
T Consensus 9 ~~v~l~~~~~~~lG~~i~-~~~~~-~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g 82 (200)
T 2qt5_A 9 TVVELMKKEGTTLGLTVS-GGIDK-DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVG 82 (200)
T ss_dssp EEEEEECCTTCCCCEEEE-CCTTS-SSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCC
T ss_pred EEEEEEeCCCCCCCEEEe-cccCC-CCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 567777777779999997 33322 335899999999999999449999999999999999999999999987653
No 126
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.48 E-value=7.1e-14 Score=77.74 Aligned_cols=70 Identities=23% Similarity=0.318 Sum_probs=58.5
Q ss_pred EEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 12 ~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+.++...+|||++.++. . ...+++|..+.+++||+++| |++||.|++|||.++.++++.++..+++..
T Consensus 8 ~~~~~~~~~~lG~~l~~g~-~-~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 77 (94)
T 1vb7_A 8 LTVDVAGPAPWGFRISGGR-D-FHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQS 77 (94)
T ss_dssp EEEEECSSSCCSBCCEEET-T-TTEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred EEEEecCCCCccEEEeccc-C-CCCCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 4566555669999997322 2 23468999999999999998 999999999999999999999999999865
No 127
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=99.22 E-value=3.1e-15 Score=86.10 Aligned_cols=74 Identities=32% Similarity=0.492 Sum_probs=60.2
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+.+.+..+.+|||++. ++.. ...+++|..+.++|||++++.|++||.|++|||.++.+.++.+++.+++.+.
T Consensus 29 ~~v~l~k~~~~glG~~l~-~g~~-~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~ 102 (112)
T 2lob_A 29 RKVLLLKEDHEGLGISIT-GGKE-HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR 102 (112)
Confidence 556777776679999996 2322 2345899999999999993339999999999999999999999999997653
No 128
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=99.48 E-value=8.2e-14 Score=75.77 Aligned_cols=68 Identities=24% Similarity=0.305 Sum_probs=56.7
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+++.+.. .+|||++. +. .+++|..+.++|||+++| |++||.|++|||.++.++++.++..+++...
T Consensus 4 r~v~l~~~~-~g~G~~~~--~~----~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 71 (83)
T 2kv8_A 4 RSVEVARGR-AGYGFTLS--GQ----APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCS 71 (83)
T ss_dssp EEEEECCCS-SCCSCBCC--CS----SSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS
T ss_pred EEEEEEeCC-CcccEEEE--cC----CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 556666543 58999884 21 248999999999999999 9999999999999999999999999997653
No 129
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=99.47 E-value=4.9e-13 Score=76.63 Aligned_cols=73 Identities=29% Similarity=0.427 Sum_probs=60.9
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+.+.+....+|||++.++ . ....+++|..+.+++||+++| |++||.|++|||+++.++.+.++..+++...
T Consensus 17 ~~v~~~~~~~~~lG~~l~~~-~-~~~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~ 89 (114)
T 1x5n_A 17 KKVFISLVGSRGLGCSISSG-P-IQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR 89 (114)
T ss_dssp EEEEECCCSSCCCCEEEEEC-C-SSSCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCS
T ss_pred EEEEEEEcCCCceeEEEeec-C-CCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence 66777776666999999733 2 233469999999999999998 9999999999999999999888888887653
No 130
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.47 E-value=1.6e-13 Score=77.20 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=59.4
Q ss_pred CCcccEEEEEECCCCC-cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 5 NPVTSEIVVVPKAKGE-ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 5 ~~~~~~~~~i~~~~~~-~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
+++.++.+.+...++. +|||.+. .. .+++|..+.+++||+++| |++||.|++|||.++.++++.++..+++.
T Consensus 10 ~~~~~~~~~v~l~~~~~g~G~~~~--~~----~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~ 82 (100)
T 1whd_A 10 DPENGEKLQITIRRGKDGFGFTIC--CD----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRS 82 (100)
T ss_dssp SCCCCEEEEEEEECCSSSSSCBCC--CS----SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred CccccceEEEEEECCCCeeeEEEe--CC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 4455555555554444 9999884 21 348999999999999999 99999999999999999999999999986
Q ss_pred CC
Q psy3490 84 NH 85 (88)
Q Consensus 84 ~~ 85 (88)
..
T Consensus 83 ~~ 84 (100)
T 1whd_A 83 CP 84 (100)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 131
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=99.47 E-value=3.2e-13 Score=75.58 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=56.6
Q ss_pred EEEECCCCCcccEEEEeCCCCCC-----CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 12 VVVPKAKGEILGVVIVESGWGSM-----LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 12 ~~i~~~~~~~lG~~i~~~~~~~~-----~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+.+ .+.+|||++........ ..+++|..+.++|||+++| |++||.|++|||.++.++++.++..+++..+
T Consensus 6 v~l~~-~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g 82 (99)
T 3khf_A 6 IVIHS-SGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSG 82 (99)
T ss_dssp EEEEC--CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred EEEEe-CCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence 44554 45699999963321111 1256899999999999999 9999999999999999999999999998553
No 132
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=99.46 E-value=6.6e-13 Score=76.57 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=52.6
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+++.+. ..+|||+|.++.. +.+|.++.+ ++..+ .|++||.|++|||.++.+++|+|++++||+++
T Consensus 14 ~~V~L~Kg-~~G~GFsI~~~~~-----g~~V~~I~~--~~~~a-GL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~ 80 (113)
T 3soe_A 14 VTIPLIKG-PKGFGFAIADSPT-----GQKVKMILD--SQWCQ-GLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFP 80 (113)
T ss_dssp EEEEEECB-TTBSSEEEEEETT-----EEEEEEESC--GGGST-TCCTTCEEEEETTEECTTSCHHHHHHHHHHSC
T ss_pred EEEEEEEC-CCcccEEEeCCCC-----CcEEEEecC--hHHhC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 55666653 3499999963221 357999988 45554 59999999999999999999999999999753
No 133
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.46 E-value=1.6e-12 Score=74.20 Aligned_cols=72 Identities=32% Similarity=0.385 Sum_probs=59.3
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
..+.+.+.+..+|||++.... ...+++|..+.++|||+++|.|++||.|++|||.++.+++++++..+++..
T Consensus 3 ~~v~l~~~~~~glG~~~~~~~---~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 74 (112)
T 1qau_A 3 ISVRLFKRKVGGLGFLVKERV---SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI 74 (112)
T ss_dssp EEEEEECBTTTBTSEEEEECS---SSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHS
T ss_pred EEEEEEcCCCCceeEEEEecC---CCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 346666665669999996322 234699999999999999994499999999999999999999999999864
No 134
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=99.45 E-value=7.2e-13 Score=81.86 Aligned_cols=64 Identities=25% Similarity=0.367 Sum_probs=54.6
Q ss_pred CcccEEEEeCCC--C----CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 20 EILGVVIVESGW--G----SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 20 ~~lG~~i~~~~~--~----~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.+|||+|.++.. + ....+++|..+.+++||++ | |++||.|++|||.++.+++|.+++..++...
T Consensus 2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 71 (195)
T 2qbw_A 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ 71 (195)
T ss_dssp CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 589999985321 1 1245799999999999999 7 9999999999999999999999999998764
No 135
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=99.45 E-value=8.8e-13 Score=75.55 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=56.9
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+.+.+ ...+|||.+. +. .+++|..+.+++||+++| |++||.|++|||.++.+++++++.++++...
T Consensus 25 r~v~l~k-~~~~~G~~l~-~~-----~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~ 92 (109)
T 2vsv_A 25 RSIRFTA-EEGDLGFTLR-GN-----APVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFG 92 (109)
T ss_dssp EEEEECC-GGGCCCEEEE-SS-----SSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred EEEEEEe-CCCceeEEEe-CC-----CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 5566665 2359999985 21 237999999999999998 9999999999999999999999999998654
No 136
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.45 E-value=9.7e-13 Score=75.48 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=59.7
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
..+.+.+.....|||.+.. . ....+++|..+.++|||+++| |++||.|++|||.++.+.++.++...++..
T Consensus 15 ~~~~l~~~~~~~~G~~l~~-~--~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 85 (114)
T 2edz_A 15 RECKLSKQEGQNYGFFLRI-E--KDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKS 85 (114)
T ss_dssp EEEEEECCTTCCCSCEEEC-C--TTCCSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHT
T ss_pred EEEEEeCCCCCcccEEEEE-e--cCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 5566777767799999852 2 223468999999999999999 999999999999999999999999999864
No 137
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.44 E-value=1.2e-12 Score=77.74 Aligned_cols=73 Identities=23% Similarity=0.296 Sum_probs=58.0
Q ss_pred EEEEEECCCC---CcccEEEEeCCCC----------CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHH
Q psy3490 10 EIVVVPKAKG---EILGVVIVESGWG----------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLST 76 (88)
Q Consensus 10 ~~~~i~~~~~---~~lG~~i~~~~~~----------~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~ 76 (88)
+.+.+.+... .+|||++.++... ....+++|..|.++|||+++| |++||.|++|||.++.++++.+
T Consensus 25 ~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~ 103 (139)
T 2vz5_A 25 QRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQ 103 (139)
T ss_dssp EEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHH
T ss_pred EEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCCCHHH
Confidence 4455554321 2899999743221 123579999999999999999 9999999999999999999999
Q ss_pred HHHHHHh
Q psy3490 77 CQTYIKV 83 (88)
Q Consensus 77 ~~~~lk~ 83 (88)
+..+++.
T Consensus 104 ~~~~l~~ 110 (139)
T 2vz5_A 104 ARKRLTK 110 (139)
T ss_dssp HHHHHCC
T ss_pred HHHHHHh
Confidence 9999976
No 138
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=99.44 E-value=3.2e-12 Score=74.47 Aligned_cols=71 Identities=23% Similarity=0.344 Sum_probs=59.3
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+.+++.+. ..+|||.+.... ...+++|..+.++|||+++| |++||.|++|||.++.++++.++..+++..
T Consensus 10 ~r~v~l~~~-~~g~G~~l~~~~---~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 80 (128)
T 2kjd_A 10 PRLCTMKKG-PSGYGFNLHSDK---SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAG 80 (128)
T ss_dssp CEEEEEECC-SSSCCEEEEECS---SSCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred cEEEEEecC-CCcccEEEEecC---CCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 366767754 358999996322 23369999999999999999 999999999999999999999999999865
No 139
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.44 E-value=1.6e-12 Score=80.58 Aligned_cols=75 Identities=21% Similarity=0.411 Sum_probs=63.1
Q ss_pred EEEEEECCCCCcccEEEEeCCCC--CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWG--SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~--~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.++.+.+....+|||++.++... ....+++|..+.++|||+++|+|++||.|++|||.++.++++.++..+++..
T Consensus 8 ~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 84 (196)
T 1p1d_A 8 TEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS 84 (196)
T ss_dssp EEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTC
T ss_pred EEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 55777777667999999854221 1245689999999999999998999999999999999999999999999865
No 140
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.43 E-value=1.4e-12 Score=72.37 Aligned_cols=66 Identities=29% Similarity=0.465 Sum_probs=55.7
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
+.+.+.+ ...+|||.+. + ..+++|..+.+++||+++| |++||.|++|||+++.++++.+++..++.
T Consensus 10 r~v~l~~-~~~~~G~~l~--~----~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~ 75 (93)
T 2dls_A 10 RCVIIQK-DQHGFGFTVS--G----DRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIKS 75 (93)
T ss_dssp EEEEEEC-SSSSCCEEEE--C----SSSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHTS
T ss_pred EEEEEEe-CCCceeEEEe--C----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC
Confidence 5666664 3459999995 2 1358999999999999999 99999999999999999999998888874
No 141
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.43 E-value=1.4e-12 Score=94.06 Aligned_cols=74 Identities=28% Similarity=0.419 Sum_probs=61.7
Q ss_pred EEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+.+.+.. .+|||+|. ++.+. ...+++|..+.+++||+++|+|+.||+|++|||.++.+++|.+++.+++.++
T Consensus 61 ~~v~l~k~~-~glGf~i~-gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g 138 (721)
T 2xkx_A 61 EEITLERGN-SGLGFSIA-GGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG 138 (721)
T ss_pred EEEEEEeCC-CCCCEEEe-CCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhccc
Confidence 445566544 49999998 44433 2457999999999999999999999999999999999999999999998654
No 142
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.42 E-value=4.4e-12 Score=74.03 Aligned_cols=73 Identities=27% Similarity=0.410 Sum_probs=59.4
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+.+.+.....|||.+.+ +. ....+++|..+.+++||+++| |++||.|++|||.++.++++.+++..++...
T Consensus 22 ~~v~v~~~~~~~lG~~~~~-~~-~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 94 (128)
T 1uf1_A 22 KKVNLVLGDGRSLGLTIRG-GA-EYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSSR 94 (128)
T ss_dssp EEEEEECCSSCCCCEEEEC-CT-TTTCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS
T ss_pred EEEEEEECCCCccCEEEEC-cc-cCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence 4566666555689999973 22 223468999999999999999 9999999999999999999999998887643
No 143
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.42 E-value=3.1e-12 Score=78.60 Aligned_cols=66 Identities=27% Similarity=0.328 Sum_probs=55.6
Q ss_pred CcccEEEEeCCCCC---CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 20 EILGVVIVESGWGS---MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 20 ~~lG~~i~~~~~~~---~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.+|||++.++.... ...+++|..+.++|+|+++|+|++||+|++|||+++.++++.+++.+++.+.
T Consensus 111 ~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 179 (196)
T 3gsl_A 111 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY 179 (196)
T ss_dssp TBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCC
T ss_pred CCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCC
Confidence 38999997432211 1346999999999999999999999999999999999999999999998753
No 144
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.41 E-value=6.8e-13 Score=75.74 Aligned_cols=72 Identities=26% Similarity=0.355 Sum_probs=59.4
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+++.+. ..+|||++.+ +. ...+++|..+.+++||+++|+|++||.|++|||+++.++++.++..+++...
T Consensus 17 ~~v~l~k~-~~glG~~l~~-~~--~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~ 88 (113)
T 1um7_A 17 RKIILHKG-STGLGFNIVG-GE--DGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAG 88 (113)
T ss_dssp EEEEEECC-SSCSSBCCBC-CS--TTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCC
T ss_pred EEEEEEEC-CCcccEEEEe-cc--CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 55667653 3699999962 22 1346899999999999999889999999999999999999999999888653
No 145
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.41 E-value=3.5e-13 Score=79.05 Aligned_cols=61 Identities=30% Similarity=0.404 Sum_probs=53.5
Q ss_pred CCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 19 GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 19 ~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
..+|||++.+ ...+++|..+.+++||+++|+|++||.|++|||.++.+.++++++.+++..
T Consensus 37 ~~glG~~i~~-----~~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~ 97 (126)
T 1wif_A 37 NLGLGLVVIQ-----NGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNI 97 (126)
T ss_dssp TTCCCCCEEE-----ETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSC
T ss_pred CceEeEEEEc-----CCCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcC
Confidence 3499999863 123589999999999999999999999999999999999999999999863
No 146
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.40 E-value=7.3e-13 Score=77.23 Aligned_cols=77 Identities=30% Similarity=0.336 Sum_probs=62.9
Q ss_pred CCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 5 NPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 5 ~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+...+.+.+.+....+|||++.... ...+++|..+.++|||+++|.|++||.|++|||.++.+++++++..+++..
T Consensus 5 ~~~~~~~v~l~~~~~~glG~~~~~~~---~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 81 (127)
T 1b8q_A 5 IEPNVISVRLFKRKVGGLGFLVKERV---SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI 81 (127)
T ss_dssp CCCCSEEEEEECTTTSCCSCCEEECT---TSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSC
T ss_pred cCCceEEEEEEeCCCCcEeEEEEecC---CCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 34445777787766679999996322 234699999999999999994499999999999999999999999999864
No 147
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=99.39 E-value=5.8e-12 Score=73.45 Aligned_cols=62 Identities=24% Similarity=0.400 Sum_probs=53.7
Q ss_pred CCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 17 AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 17 ~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.++.+|||.+.++. . .+++|..|.++|||+++| |++||.|++|||.++.+++++++...++.
T Consensus 36 ~~~~~lG~~l~~~~-~---~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 97 (124)
T 3tsv_A 36 RKGDSVGLRLAGGN-D---VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLD 97 (124)
T ss_dssp ECSSCCCEEEEECT-T---SCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHH
T ss_pred CCCCceeEEEecCC-C---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 34579999996322 1 459999999999999999 99999999999999999999999998874
No 148
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=99.39 E-value=2.8e-12 Score=70.33 Aligned_cols=67 Identities=19% Similarity=0.163 Sum_probs=51.5
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
+.+++.+. ..+|||++.... ...+++|..+ ++|||+ +| |++||.|++|||.++.++++.++..+++.
T Consensus 5 ~~v~l~k~-~~g~G~~~~~~~---~~~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~ 71 (88)
T 3bpu_A 5 ITVHIVKG-PMGFGFTIADSP---GGGGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDMLVE 71 (88)
T ss_dssp EEEEEECB-TTBSSCEEEECT---TSSSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHHHT
T ss_pred EEEEEEcC-CCceeEEEEecC---CCCcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Confidence 45556653 359999996321 1235888886 999999 76 99999999999999999999999999984
No 149
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.38 E-value=4.4e-12 Score=78.82 Aligned_cols=67 Identities=28% Similarity=0.387 Sum_probs=56.2
Q ss_pred EECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 14 VPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 14 i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+....+|||++... ..+++|..+.++|+|+++|+|++||+|++|||+++.++++.+++.+++.+.
T Consensus 119 l~~~~~~~lG~~~~~~-----~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~ 185 (206)
T 3r0h_A 119 LMKKAGKELGLSLSPN-----EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN 185 (206)
T ss_dssp EECCTTCCCCEEEEEC-----SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred EecCCCCccCeEEEcC-----CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 3343445899999621 235899999999999999889999999999999999999999999998754
No 150
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.37 E-value=6.4e-12 Score=70.21 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=51.4
Q ss_pred EEEEECCCC-CcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 11 IVVVPKAKG-EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 11 ~~~i~~~~~-~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+++...++ .+|||++.+.. .+++|..+.++ |+++| |++||.|++|||.++.+++|++++++|+..
T Consensus 11 ~~~v~l~~~~~g~G~~i~~~~-----~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 77 (96)
T 1ujv_A 11 LMTLTIVKGAQGFGFTIADSP-----TGQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILKDC 77 (96)
T ss_dssp CEEEEEECCSSSSSEEEEEET-----TEEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred EEEEEEEeCCCceeEEEEcCC-----CCEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 333333334 49999995211 25899999983 66666 999999999999999999999999999874
No 151
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.37 E-value=1.3e-11 Score=67.78 Aligned_cols=66 Identities=18% Similarity=0.285 Sum_probs=53.9
Q ss_pred EEEECCCCC--cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 12 VVVPKAKGE--ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 12 ~~i~~~~~~--~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
+.+.+..+. .|||++.. ...+++|..+.++|||+++| |++||.|++|||.++.+.++.++..+++.
T Consensus 7 ~~~~~~~~~~~~lG~~~~~-----~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~ 74 (90)
T 2eaq_A 7 ISINQTPGKSLDFGFTIKW-----DIPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAK 74 (90)
T ss_dssp EEEECCTTCSSCCSEEEEE-----ETTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHH
T ss_pred EEEEecCCCCCcccEEEEe-----cCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHh
Confidence 445554444 79999852 12358999999999999998 99999999999999988899999888864
No 152
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=6.2e-13 Score=77.60 Aligned_cols=73 Identities=25% Similarity=0.364 Sum_probs=59.0
Q ss_pred EEEEEECCCCCcccEEEEeCC----------------------CC----CCCCcEEEEEECCCChhhhhCCCCCCCEEEE
Q psy3490 10 EIVVVPKAKGEILGVVIVESG----------------------WG----SMLPTVVIANLAPAGAAARCGQLNIGDQIIA 63 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~----------------------~~----~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~ 63 (88)
+.+++.+.. .+|||++.+.. .. ....+++|..|.+++||+++| |++||.|++
T Consensus 10 r~v~l~r~~-~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~ 87 (126)
T 2yuy_A 10 KTVTLKRTS-QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRIIK 87 (126)
T ss_dssp CCEEEECCS-SSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHT-CCSSCCCCE
T ss_pred EEEEEEECC-CCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcC-CCCCCEEEE
Confidence 667787643 58999996310 00 012458999999999999999 999999999
Q ss_pred ECCEECCCCCHHHHHHHHHhC
Q psy3490 64 VNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 64 Vng~~~~~~~~~~~~~~lk~~ 84 (88)
|||.++.++++.+++.+|+..
T Consensus 88 ing~~v~~~~~~~~~~~l~~~ 108 (126)
T 2yuy_A 88 VNGESVIGKTYSQVIALIQNS 108 (126)
T ss_dssp ETTEECSSCCHHHHHHHHHTC
T ss_pred ECCEECCCCCHHHHHHHHHcC
Confidence 999999999999999999865
No 153
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=99.36 E-value=1.9e-11 Score=65.62 Aligned_cols=64 Identities=23% Similarity=0.433 Sum_probs=54.4
Q ss_pred EECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 14 VPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 14 i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.......|||.+. .+++|..+.++|||+++|.|++||.|++|||.++.++++.++..+++...
T Consensus 7 ~~~~~~~~~g~~~~--------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 70 (81)
T 2rcz_A 7 VKSRKNEEYGLRLA--------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK 70 (81)
T ss_dssp ECCSTTCCCCEEEE--------EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTST
T ss_pred EECCCCCCCCEEEe--------CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC
Confidence 34444558999873 24899999999999999889999999999999999999999999998643
No 154
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.35 E-value=7.3e-12 Score=85.11 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=58.6
Q ss_pred CCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 5 NPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 5 ~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
..+..+.+.+.+ +.+|||++.++. ..+++|..|.+||||+++| |++||.|++|||.++.++++++++.+++.
T Consensus 6 ~~~~~~~v~~~k--~~~lG~~i~gg~----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~ 77 (391)
T 3tsz_A 6 LRPSMKLVKFRK--GDSVGLRLAGGN----DVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLD 77 (391)
T ss_dssp ---CEEEEEEEC--CSSCCEEEEEET----TTEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred cCCCcEEEEeec--CCceeEEEEecC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 344446666665 457999997322 2469999999999999999 99999999999999999999999999985
No 155
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.35 E-value=2.3e-13 Score=76.83 Aligned_cols=65 Identities=23% Similarity=0.309 Sum_probs=54.6
Q ss_pred CCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 17 AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 17 ~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
....+|||++.++. + ...+++|..+.+++||+++| |++||.|++|||.++.++++.++..+++..
T Consensus 12 ~~~~~lG~~l~~g~-~-~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 76 (103)
T 1v5l_A 12 PGPAPWGFRLSGGI-D-FNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAA 76 (103)
T ss_dssp ESSSCCSBCCEEET-T-TTEEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTC
T ss_pred cCCCCcCEEEeccc-c-CCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 34569999997322 1 22358999999999999998 999999999999999999999999999864
No 156
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=99.35 E-value=2.7e-11 Score=66.65 Aligned_cols=59 Identities=22% Similarity=0.438 Sum_probs=52.1
Q ss_pred CCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 19 GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 19 ~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
...|||.+. .+++|..+.++|||+++|+|++||.|++|||.++.++++.++..+++...
T Consensus 14 ~~~~g~~~~--------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 72 (92)
T 3cyy_A 14 NEEYGLRLA--------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK 72 (92)
T ss_dssp TSCCCEEEE--------EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred CCCCCEEEe--------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 348998873 34899999999999999889999999999999999999999999998643
No 157
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.34 E-value=2.7e-11 Score=69.62 Aligned_cols=69 Identities=26% Similarity=0.389 Sum_probs=56.2
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+.+.+. ..+|||++..+. ..+++|..+.+++||+++| |++||.|++|||+++.++++.+++..++..
T Consensus 21 ~~v~l~~~-~~~lG~~~~~~~----~~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~ 89 (117)
T 1uit_A 21 RHVKVQKG-SEPLGISIVSGE----KGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQ 89 (117)
T ss_dssp EEEEEECS-SCCCCEEEEECT----TSCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSC
T ss_pred EEEEEEeC-CCCccEEEEccC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 45666654 369999996321 2369999999999999999 999999999999999999999888766543
No 158
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.34 E-value=1.2e-11 Score=85.71 Aligned_cols=67 Identities=24% Similarity=0.397 Sum_probs=58.1
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
+.+.+.+ +.+|||++.++. . .+++|.+|.+||||+++| |++||.|++|||.++.++++++++.+|+.
T Consensus 3 r~V~l~k--~~~lG~~i~gg~-~---~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~ 69 (468)
T 3shw_A 3 KLVKFRK--GDSVGLRLAGGN-D---VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLD 69 (468)
T ss_dssp EEEEEEC--CSSCCEEEEEET-T---TEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred eEEEEec--CCccceEEEccC-c---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 4566665 579999997332 2 469999999999999999 99999999999999999999999999987
No 159
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.3e-12 Score=72.90 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=55.7
Q ss_pred EEEEEECCCCC-cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGE-ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~-~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+++.+.... +|||.+. + ..+++|..+.+++||+ +| |++||.|++|||.++.++++.+++.+++..
T Consensus 10 ~~v~l~~~~~~~~~G~~l~--~----~~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~ 77 (96)
T 2edv_A 10 HTVKIDKDTLLQDYGFHIS--E----SLPLTVVAVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSWERAVDILREA 77 (96)
T ss_dssp EEEEECCCSSSCSCSBCCC--S----SSSCBCCCBCSSSSST-TT-SCTTCBEEEESSCBSTTCCHHHHHHHHHHC
T ss_pred EEEEEEECCCCCcccEEEe--c----CCCeEEEEECCCCchh-hC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 55667765544 8999984 2 2358999999999995 55 999999999999999999999999999864
No 160
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.33 E-value=2.9e-11 Score=73.24 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=59.1
Q ss_pred cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+.+.+.+.....|||++... ..+++|..+.++|||+++| |+.||.|++|||.++.+++++.+..+++..
T Consensus 5 ~r~v~l~k~~~~~lG~~~~~~-----~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~ 74 (166)
T 1w9e_A 5 PREVILCKDQDGKIGLRLKSI-----DNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQA 74 (166)
T ss_dssp CEEEEEECCTTSCCSEEEEEE-----TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred CEEEEEEeCCCCcEeEEEEeC-----CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence 367888887777999999632 2469999999999999998 999999999999999999887777777654
No 161
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=99.32 E-value=2e-11 Score=69.02 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=52.3
Q ss_pred CCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 17 AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 17 ~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
....++||.+.. ...+.+|..|.++|||+++| |++||.|++|||.++...+++++...++.
T Consensus 25 ~~~~g~G~~l~~-----~~~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~~ 85 (101)
T 3qik_A 25 PQEEDYGFDIEE-----KNKAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILNQ 85 (101)
T ss_dssp CCSSSSSEEEEE-----ETTEEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHHH
T ss_pred eCCCcccEEEEc-----cCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHHH
Confidence 345699999952 12247899999999999999 99999999999999988899999999976
No 162
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.30 E-value=1.7e-11 Score=71.25 Aligned_cols=73 Identities=21% Similarity=0.308 Sum_probs=55.7
Q ss_pred EEEEEECCCC-CcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKG-EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~-~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+.+.+... .+|||.+..........+++|..|.+++||+++|+|++||.|++|||.++. ++.++..+|+..
T Consensus 21 ~~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~l~~~ 94 (124)
T 1wh1_A 21 EEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSE 94 (124)
T ss_dssp CCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCS
T ss_pred EEEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECC--CHHHHHHHHHhC
Confidence 4444444333 389999963222112357999999999999999889999999999999997 588999998763
No 163
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.30 E-value=3.1e-12 Score=73.40 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=56.3
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+.+.+ .+.+|||.+. +. .+++|..+.+++||+++| |+.||.|++|||.++.+++++++..+++...
T Consensus 17 r~v~l~~-~~~~~G~~l~-~~-----~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~ 84 (111)
T 1vae_A 17 RGIHFTV-EEGDLGFTLR-GN-----TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFG 84 (111)
T ss_dssp CCCCEEC-CSSCCSCCEE-SS-----SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTT
T ss_pred eEEEEEc-CCCcccEEEe-CC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 4455665 3469999985 22 237899999999999998 9999999999999999999999999998654
No 164
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.25 E-value=1.3e-10 Score=72.01 Aligned_cols=66 Identities=29% Similarity=0.510 Sum_probs=55.4
Q ss_pred CCcccEEEEeCCCCC-C-CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 19 GEILGVVIVESGWGS-M-LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 19 ~~~lG~~i~~~~~~~-~-~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
..+|||.+.++.... . ..+++|..+.++++|+++|+|++||.|++|||.++.+++++++..+++..
T Consensus 116 ~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 183 (200)
T 2qt5_A 116 GNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQC 183 (200)
T ss_dssp TTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 458999997432211 1 34699999999999999999999999999999999999999999999873
No 165
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=99.24 E-value=2.5e-11 Score=76.80 Aligned_cols=70 Identities=23% Similarity=0.327 Sum_probs=57.7
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+++.+. ..+|||.+. +. ....+++|..|.+++||+++| |+.||.|++|||.++.++++.++..+++..
T Consensus 11 r~v~l~k~-~~glG~~l~--~~-~~~~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~~ 80 (216)
T 2krg_A 11 RLCTMKKG-PSGYGFNLH--SD-KSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAG 80 (216)
T ss_dssp EEEEEECC-SSSSCEEEC--CC-SSSCSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHHH
T ss_pred EEEEEEeC-CCCceEEEE--ec-CCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence 55666653 358999995 22 223468999999999999999 999999999999999999999999998753
No 166
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.23 E-value=1e-10 Score=72.45 Aligned_cols=74 Identities=22% Similarity=0.369 Sum_probs=58.4
Q ss_pred EEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 11 ~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+.+.+.....|||.+..........+++|..+.++|||+++|+|++||.|++|||.++.+++++++.++++..
T Consensus 110 ~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 183 (196)
T 1p1d_A 110 HVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC 183 (196)
T ss_dssp EEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC
T ss_pred EEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 34444333448999996322211234689999999999999998999999999999999999999999999865
No 167
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.18 E-value=2.1e-10 Score=82.80 Aligned_cols=72 Identities=29% Similarity=0.362 Sum_probs=59.2
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+.+.+. ..+|||++.+ +. ...+++|..|.++|+|+++|+|++||.|++|||.++.++++++++.+|+.+.
T Consensus 309 ~~v~l~~~-~~~lG~~i~~-~~--~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~ 380 (721)
T 2xkx_A 309 RRIVIHRG-STGLGFNIVG-GE--DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG 380 (721)
T ss_pred EEEEEEEC-CCCccEEEec-cC--CCCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcC
Confidence 44555543 3589999962 21 1346999999999999999999999999999999999999999999998754
No 168
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.17 E-value=1.5e-10 Score=66.92 Aligned_cols=74 Identities=18% Similarity=0.296 Sum_probs=54.3
Q ss_pred EEEEEECCCCCcccEEEEeCCC-CCCCCcEEEEEECC--CChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGW-GSMLPTVVIANLAP--AGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~-~~~~~~i~I~~v~~--g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+.+.+.......+||.+.-... .....+++|..+.+ ++||+++| |++||.|++|||.++.+++|.++...++..
T Consensus 17 ~l~~~~~~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~~~ 93 (118)
T 2yub_A 17 TLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIKQT 93 (118)
T ss_dssp EEEEECSCSSSSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHHCC
T ss_pred EEeccCCccCCCceEEEEeccccccCCCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHhC
Confidence 3333433333445555531111 12345799999999 99999998 999999999999999999999999998764
No 169
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.82 E-value=8.7e-08 Score=57.76 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=52.5
Q ss_pred EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..+++.+.....|||.+. .+ +|..+.+++||+++| |++||.|++|||.++.+..+.++...++...
T Consensus 90 ~~v~l~~~~~~~lG~~~~--------~g-~v~~v~~~s~a~~aG-l~~GD~I~~ing~~v~~~~~~~v~~~v~r~g 155 (166)
T 1w9e_A 90 RTITMHKDSTGHVGFIFK--------NG-KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSG 155 (166)
T ss_dssp EEEEEECCTTSCCSEEEE--------TT-EEEEECTTSHHHHTT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred EEEEEecCCCCcEeEEEe--------CC-EEEEEccCCHHHHcC-CCCCCEEEEECCEECCCCChHHHHHHHhhCC
Confidence 445555433457888874 12 899999999999998 9999999999999999999998887776543
No 170
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.77 E-value=7.2e-10 Score=75.19 Aligned_cols=55 Identities=27% Similarity=0.424 Sum_probs=0.0
Q ss_pred cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+|||++.+ .+|..+.++|+|+++| |++||+|++|||.++.+.+|++++.+++++.
T Consensus 309 ~lG~~i~~---------g~I~~V~~gs~A~~aG-L~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~ 363 (388)
T 3suz_A 309 QLGFSVQN---------GIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSV 363 (388)
T ss_dssp -----------------------------------------------------------------
T ss_pred ccceEEec---------CEEEEeecCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 67777631 2889999999999999 9999999999999999999999999998754
No 171
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=98.72 E-value=6.2e-08 Score=65.54 Aligned_cols=60 Identities=28% Similarity=0.473 Sum_probs=50.4
Q ss_pred cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
++|+.+.... ....+++|..+.++|||+++| |++||.|++|||.++.+++.+++..+++.
T Consensus 86 giG~~~~~~~--~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~ 145 (388)
T 1fc6_A 86 GVGLEITYDG--GSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQG 145 (388)
T ss_dssp BCSEEEEECT--TCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCB
T ss_pred EEEEEEEEee--cCCCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence 7899885210 112358999999999999998 99999999999999999999999988874
No 172
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.71 E-value=8.4e-08 Score=54.47 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=40.2
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.+++|..+.++|||+++| |++||.|++|||.++. +..+....++.
T Consensus 35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~ 79 (113)
T 2pzd_A 35 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT 79 (113)
T ss_dssp SCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHHH
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhC
Confidence 469999999999999999 9999999999999997 56777777764
No 173
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.63 E-value=1.7e-07 Score=52.27 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=38.2
Q ss_pred CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 35 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 35 ~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
..+++|..+.++|||+. | |++||.|++|||.++. +.++....+..
T Consensus 6 ~~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~--~~~dl~~~l~~ 50 (100)
T 3i18_A 6 YDGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFK--SSQEFIDYIHS 50 (100)
T ss_dssp CCCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCS--SHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECC--CHHHHHHHHHh
Confidence 34699999999999995 6 9999999999999997 55677777764
No 174
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.63 E-value=1.6e-07 Score=52.08 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=37.1
Q ss_pred EEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 39 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 39 ~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
+|..+.++|||+++| |+.||.|++|||..+. +.+++...+..
T Consensus 5 ~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~d~~~~l~~ 46 (95)
T 3id1_A 5 VVGEIAANSIAAEAQ-IAPGTELKAVDGIETP--DWDAVRLQLVD 46 (95)
T ss_dssp BEEEECTTSHHHHTT-CCTTCEEEEETTEECS--SHHHHHHHHHH
T ss_pred EEEeeCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHH
Confidence 788999999999998 9999999999999997 56777777754
No 175
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.58 E-value=3e-07 Score=52.08 Aligned_cols=44 Identities=32% Similarity=0.471 Sum_probs=38.6
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
.+++|..+.++|||+++| |++||.|++|||.++. +..+....++
T Consensus 35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~ 78 (112)
T 2p3w_A 35 SGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLV--DSSELQEAVL 78 (112)
T ss_dssp SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHH
T ss_pred CCeEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHh
Confidence 469999999999999998 9999999999999997 4567766664
No 176
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.56 E-value=8.6e-08 Score=53.04 Aligned_cols=45 Identities=24% Similarity=0.408 Sum_probs=38.7
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+++|..+.++|||++ | |++||.|++|||.++. +..+....++..
T Consensus 5 ~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~--~~~~l~~~l~~~ 49 (94)
T 2kl1_A 5 KGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPIN--TSEQIVSYVREK 49 (94)
T ss_dssp CCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCC--CHHHHHHHHHHS
T ss_pred CcEEEEEECCCChHHh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhC
Confidence 3589999999999998 7 9999999999999997 457777777654
No 177
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.56 E-value=1.8e-08 Score=55.62 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=37.8
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+++|..+.++|||++ | |++||.|++|||.++. +..++...++..
T Consensus 2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~--~~~~l~~~l~~~ 45 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQ--SAEKLIDYISSK 45 (91)
T ss_dssp CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCS--SHHHHHHHHSSC
T ss_pred ceEEEEECCCChHHH-c-CCCCCEEEEECCEECC--CHHHHHHHHHcC
Confidence 467888999999998 7 9999999999999997 467888887654
No 178
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.54 E-value=1.6e-07 Score=51.22 Aligned_cols=43 Identities=33% Similarity=0.536 Sum_probs=37.8
Q ss_pred EEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 38 i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
++|..+.++|||+++| |+.||.|++|||.++. +..++...++.
T Consensus 6 ~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~ 48 (91)
T 2zpm_A 6 PVLENVQPNSAASXAG-LQAGDRIVXVDGQPLT--QWVTFVMLVRD 48 (91)
T ss_dssp CBCSEECTTSHHHHTT-CCTTCEEEEETTEECC--CHHHHHHHHHH
T ss_pred eEEEEECCCChHHhcC-CCCCCEEEEECCeEcC--CHHHHHHHHhc
Confidence 5788899999999988 9999999999999997 56788777765
No 179
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=98.54 E-value=3.6e-07 Score=53.55 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=38.5
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+++|..+.++|||+ +| |++||.|++|||.++. +..+....++..
T Consensus 57 ~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~--~~~~l~~~l~~~ 101 (134)
T 2l97_A 57 SGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIA--SSTDLQSALYNH 101 (134)
T ss_dssp SCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECC--CHHHHHHHHHHS
T ss_pred CCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcC--CHHHHHHHHHhC
Confidence 468999999999999 88 9999999999999997 456777766643
No 180
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.51 E-value=3.8e-07 Score=56.97 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=34.6
Q ss_pred CcEEEEEECCCChhhhhCCCCCC-CEEEEECCEECCCCCH
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIG-DQIIAVNGVSLVGLPL 74 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~g-d~i~~Vng~~~~~~~~ 74 (88)
.+++|..+.++|||+++| |+.| |.|++|||.++.+...
T Consensus 16 ~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~ 54 (209)
T 3rle_A 16 EGYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKDND 54 (209)
T ss_dssp EEEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSSSS
T ss_pred CEEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCHHH
Confidence 469999999999999999 9999 9999999999987653
No 181
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.51 E-value=2.7e-07 Score=50.21 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=35.8
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
++.|..+.|+|+|+++| |++||.|++|||.++. +..+....++
T Consensus 20 G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~--~~~d~~~~~~ 62 (87)
T 2i6v_A 20 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLT--DPNVMNTLFQ 62 (87)
T ss_dssp EEEEEECSCHHHHHHTT-CCTTCEEEEETTEETT--CHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHH
Confidence 56788888888999998 9999999999999997 4566666554
No 182
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=98.39 E-value=1.9e-06 Score=56.82 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=44.9
Q ss_pred cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.+|+.+. .. ....+++|..+.+++||+++| |+.||.|++|||.++. +..+....++.
T Consensus 230 ~lGi~~~--~~-~~~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~l~~~l~~ 286 (324)
T 1y8t_A 230 SLGVQVT--ND-KDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPIN--SADALVAAVRS 286 (324)
T ss_dssp ECCEEEE--SC-SSSSSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECC--SHHHHHHHHHT
T ss_pred ccceEee--ec-cCCCceEEEEECCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHh
Confidence 6777774 11 123468999999999999998 9999999999999997 45677766654
No 183
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=98.36 E-value=1e-06 Score=60.18 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=39.6
Q ss_pred cccEEEEeCCCCCCCC-cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCC
Q psy3490 21 ILGVVIVESGWGSMLP-TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73 (88)
Q Consensus 21 ~lG~~i~~~~~~~~~~-~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~ 73 (88)
|+||.+.... ..... .++|..+.++|||+++| |++||.|++|||.++.+..
T Consensus 75 G~~~~l~~~~-~~~~~~~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~ 126 (403)
T 3k50_A 75 GFDYTLYKVL-DNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV 126 (403)
T ss_dssp SEEEEEEECT-TCSSCEEEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT
T ss_pred ceEEEEEEcC-CCCcceeEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh
Confidence 7777775211 11111 37899999999999999 9999999999999998774
No 184
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.34 E-value=3e-06 Score=49.23 Aligned_cols=44 Identities=27% Similarity=0.391 Sum_probs=37.7
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.+++|..+.+++||+++ |++||.|++|||.++. +..+....++.
T Consensus 25 ~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~--~~~dl~~~l~~ 68 (125)
T 2hga_A 25 DGVQIDSVVPGSPASKV--LTPGLVIESINGMPTS--NLTTYSAALKT 68 (125)
T ss_dssp CCEEEEEECSSSGGGGT--SCTTCEEEEETTEECS--SHHHHHHHHTT
T ss_pred CceEEEEECCCChHHHh--cCCCCEEEEECCEEcC--CHHHHHHHHHh
Confidence 36899999999999987 9999999999999997 45677766653
No 185
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.31 E-value=1.9e-06 Score=57.56 Aligned_cols=45 Identities=22% Similarity=0.455 Sum_probs=40.2
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.+++|..+.++|||+++| |++||.|++|||.++. +..+....++.
T Consensus 263 ~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~--~~~~l~~~l~~ 307 (345)
T 3stj_A 263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIAT 307 (345)
T ss_dssp SSEEEEEECTTSHHHHHT-CCTTCEECEETTEECS--CHHHHHHHHHT
T ss_pred ceEEEEEeccCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHh
Confidence 468999999999999999 9999999999999997 66777777764
No 186
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.29 E-value=1.4e-06 Score=48.98 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=33.9
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
++.|....|+|+|+++| |++||.|++|||.++.+.. +...+++
T Consensus 38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~~~--d~~~~~~ 80 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPN--VMNTLFQ 80 (105)
T ss_dssp EEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTSTT--HHHHHHH
T ss_pred EEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHH
Confidence 45677788888889998 9999999999999998653 3334443
No 187
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.29 E-value=2.4e-06 Score=58.65 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=41.4
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.+++|..+.++|||+++| |++||.|++|||+++. +.++..+.++..
T Consensus 363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~--~~~~~~~~l~~~ 408 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAK 408 (436)
T ss_pred CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhC
Confidence 368999999999999998 9999999999999997 678888888764
No 188
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.28 E-value=2.4e-06 Score=56.28 Aligned_cols=45 Identities=22% Similarity=0.435 Sum_probs=39.9
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.+++|..+.++|||+++| |++||.|++|||+++. +..+....++.
T Consensus 244 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~--~~~~l~~~l~~ 288 (318)
T 1te0_A 244 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAI--SALETMDQVAE 288 (318)
T ss_dssp CCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECC--CHHHHHHHHHT
T ss_pred CcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHh
Confidence 469999999999999998 9999999999999997 46777777764
No 189
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=98.27 E-value=2.9e-06 Score=56.17 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=40.0
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.+++|..+.++|||+++| |++||.|++|||+++. +..+....++.
T Consensus 256 ~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~--~~~~l~~~l~~ 300 (325)
T 1lcy_A 256 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT 300 (325)
T ss_dssp SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHTT
T ss_pred CCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHhC
Confidence 479999999999999999 9999999999999997 56777777764
No 190
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.24 E-value=3.8e-06 Score=59.83 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=41.2
Q ss_pred CcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHH
Q psy3490 20 EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 77 (88)
Q Consensus 20 ~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~ 77 (88)
..+|+.+... ..+++|..|.++|||+++| |++||.|++|||.++......++
T Consensus 485 ~~lG~~~~~~-----~~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~~~~l~~~ 536 (597)
T 4fgm_A 485 VNFGAKYKAS-----PQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQSVKRI 536 (597)
T ss_dssp CCCSEEEEEE-----TTEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCTTTHHHH
T ss_pred cccceEEecc-----CCeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECCHHHHHHH
Confidence 3788887421 1258999999999999999 99999999999999954444443
No 191
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.23 E-value=3.4e-06 Score=58.23 Aligned_cols=45 Identities=24% Similarity=0.317 Sum_probs=40.4
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
+++|..+.++|||+++| |++||.|++|||.++. +.++..+.++..
T Consensus 387 Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~--~~~~~~~~l~~~ 431 (451)
T 3pv2_A 387 GVQVVGASENSAGWRAG-IRPGDIIISANKKPVT--DVKSLQTIAQEK 431 (451)
T ss_dssp EEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHTTSS
T ss_pred ceEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhcC
Confidence 68999999999999999 9999999999999997 568888888753
No 192
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.20 E-value=2.2e-06 Score=53.50 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=43.1
Q ss_pred cccEEEEeCCCC-CCCCcEEEEEECCCChhhhhCCCCC-CCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 21 ILGVVIVESGWG-SMLPTVVIANLAPAGAAARCGQLNI-GDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 21 ~lG~~i~~~~~~-~~~~~i~I~~v~~g~~a~~~g~l~~-gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.+|+.+..-... ....+++|..+.++|||+++| |++ ||.|++|||. +. +.++....++.
T Consensus 96 ~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v~--~~~~l~~~l~~ 156 (209)
T 3rle_A 96 LLGVSIRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-MN--ESEDLFSLIET 156 (209)
T ss_dssp SSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-CC--SSSCHHHHHHH
T ss_pred ccceEEeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-eC--CHHHHHHHHHh
Confidence 678887521111 122579999999999999999 999 9999999997 54 44555555554
No 193
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.17 E-value=6.8e-06 Score=56.69 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=39.0
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.+++|..+.++|||+++| |+.||.|++|||.++.+ ..+....+..
T Consensus 282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~~v~~--~~~l~~~l~~ 326 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQ--ATQVKTTISL 326 (451)
T ss_dssp CCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHHT
T ss_pred ceEEEEecCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHh
Confidence 579999999999999999 99999999999999974 5666666653
No 194
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.15 E-value=6.7e-06 Score=56.43 Aligned_cols=44 Identities=23% Similarity=0.465 Sum_probs=37.8
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
.+++|..+.++|||+++| |+.||.|++|||.++.+ ..+....+.
T Consensus 263 ~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~~v~~--~~~l~~~l~ 306 (436)
T 4a8c_A 263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNS--FAELRSRIA 306 (436)
T ss_pred cceEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHH
Confidence 468999999999999999 99999999999999984 455555554
No 195
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=97.99 E-value=8e-06 Score=54.48 Aligned_cols=45 Identities=29% Similarity=0.471 Sum_probs=39.1
Q ss_pred CcEEEEEECCCChhhhhCCCCC-----------CCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 36 PTVVIANLAPAGAAARCGQLNI-----------GDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~-----------gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.+++|..+.++|||+++| |+. ||.|++|||.++.+. ++....+..
T Consensus 251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~ 306 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQ 306 (348)
T ss_dssp SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTT
T ss_pred ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHh
Confidence 479999999999999999 998 999999999999744 677777743
No 196
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=97.83 E-value=2.4e-06 Score=56.65 Aligned_cols=44 Identities=32% Similarity=0.432 Sum_probs=0.0
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
.+++|..+.++|||+++| |++||.|++|||.++. +..+....++
T Consensus 254 ~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~ 297 (332)
T 3num_A 254 SGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVV--SANDVSDVIK 297 (332)
T ss_dssp -----------------------------------------------
T ss_pred CceEEEEeccCCChHHcC-CCCCCEEEEECCEECC--CHHHHHHHHh
Confidence 368999999999999998 9999999999999996 3445555544
No 197
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=97.72 E-value=8.6e-05 Score=54.94 Aligned_cols=56 Identities=11% Similarity=0.005 Sum_probs=45.0
Q ss_pred cccEEEEeCCCCCCCCcEEEEEECCC--------ChhhhhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 21 ILGVVIVESGWGSMLPTVVIANLAPA--------GAAARCGQ-LNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 21 ~lG~~i~~~~~~~~~~~i~I~~v~~g--------~~a~~~g~-l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
++|+.+.. ...+++|..+.++ |||+++|. |+ ||.|++|||.++.++. ++..+++..
T Consensus 738 g~G~~~~~-----~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~ 802 (1045)
T 1k32_A 738 RIACDFKL-----DGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEK 802 (1045)
T ss_dssp BCSEEEEE-----ETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTT
T ss_pred eecEEEEE-----eCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCC
Confidence 88888742 1235899999998 99999883 88 9999999999998775 677777753
No 198
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.70 E-value=5.1e-06 Score=57.29 Aligned_cols=45 Identities=27% Similarity=0.393 Sum_probs=0.0
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
.+++|..+.++|||+++| |++||.|++|||.++. ++++..++++.
T Consensus 383 ~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~~v~--~~~~l~~~l~~ 427 (448)
T 1ky9_A 383 QGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDS 427 (448)
T ss_dssp ------------------------------------------------
T ss_pred CeEEEEEecCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHc
Confidence 358999999999999999 9999999999999997 46677777664
No 199
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.52 E-value=2e-05 Score=54.34 Aligned_cols=44 Identities=20% Similarity=0.470 Sum_probs=37.9
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk 82 (88)
.+++|..|.++|||+++| |+.||.|++|||.++.+. .+....+.
T Consensus 286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~~v~~~--~~l~~~l~ 329 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVG 329 (448)
T ss_dssp CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTT
T ss_pred CceEEEEeccCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHH
Confidence 378999999999999988 999999999999999865 56666654
No 200
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.38 E-value=0.00061 Score=48.16 Aligned_cols=48 Identities=10% Similarity=0.188 Sum_probs=42.4
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH 86 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~ 86 (88)
.+++|+.|.++++|...+ ++.||.|++|||+++. +..+..+++++++.
T Consensus 415 ~gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~--s~~~l~~~l~~~k~ 462 (539)
T 4fln_A 415 QIVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIR--NIHHLAHLIDMCKD 462 (539)
T ss_dssp CCEEEEEECCCGGGTTCS-SCCSEEEEEETTEECC--SHHHHHHHHHTCCS
T ss_pred eEEEEEEecCCchhhhcC-CCCCCEEEeECCEEcC--CHHHHHHHHHHcCC
Confidence 368999999999999988 9999999999999997 67788888887753
No 201
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.19 E-value=0.00059 Score=48.21 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=30.9
Q ss_pred CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCC
Q psy3490 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71 (88)
Q Consensus 36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~ 71 (88)
.+++|..|.++|||++ + |+.||.|++|||..+..
T Consensus 277 ~Gv~V~~V~~~spA~~-a-l~~GDvI~~idg~~V~~ 310 (539)
T 4fln_A 277 EGVLVRRVEPTSDASK-V-LKEGDVIVSFDDLHVGC 310 (539)
T ss_dssp BCEEEEEECTTSGGGG-T-CCTTCEEEEETTEECBS
T ss_pred CceeeecccCCChHHh-C-ccCCCEEEEECCEEeCc
Confidence 4799999999999986 4 99999999999999964
No 202
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=63.68 E-value=9.7 Score=27.39 Aligned_cols=28 Identities=14% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEEEECCCChhhhhCCCCCCCEEEEECCEECC
Q psy3490 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70 (88)
Q Consensus 38 i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~ 70 (88)
+||..+..... .+..||+|++|||.++.
T Consensus 98 i~V~dv~~~~s-----~I~vGdEIlsING~pv~ 125 (583)
T 3dor_A 98 FYFVDIMTFSS-----EIRVGDELLEVDGAPVQ 125 (583)
T ss_dssp EEEEEECSSCC-----SSCTTCEEEEETTEEHH
T ss_pred EEEEecccccc-----CCCCCCEEEEECCccHH
Confidence 77766633322 38999999999999875
No 203
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=51.92 E-value=9.7 Score=22.07 Aligned_cols=32 Identities=9% Similarity=0.206 Sum_probs=21.6
Q ss_pred ChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490 47 GAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 47 ~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
+|-.-..++++|..|++|.|. +.+.|.+.|+.
T Consensus 89 ~~~~wva~Vk~G~ilfEi~gv-----~~~~A~eAlr~ 120 (135)
T 3bbo_O 89 SPEYWVAVVKPGRILYEISGV-----AENIARRAVAI 120 (135)
T ss_dssp CSSCCCCCCCTTCEEEEECSS-----CTTHHHHHHHH
T ss_pred CceEEEEEECCCCEEEEEecC-----CHHHHHHHHHH
Confidence 444445568999999999993 33455566553
No 204
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=47.75 E-value=6.9 Score=24.59 Aligned_cols=23 Identities=30% Similarity=0.715 Sum_probs=19.5
Q ss_pred hhhhCCCCCCCEEEEECCEECCCC
Q psy3490 49 AARCGQLNIGDQIIAVNGVSLVGL 72 (88)
Q Consensus 49 a~~~g~l~~gd~i~~Vng~~~~~~ 72 (88)
+.++| +.+|..+.++||.++.+.
T Consensus 52 ~~~d~-~~~~~~~~~~ng~~~~~~ 74 (219)
T 2j3t_D 52 GQRDG-IRVGHAVLAINGMDVNGR 74 (219)
T ss_dssp CCCTT-CCTTCEEEEETTEECBTT
T ss_pred cccCC-ccccceeeecCCccCCCc
Confidence 44566 999999999999999865
No 205
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=47.06 E-value=8.5 Score=21.74 Aligned_cols=29 Identities=10% Similarity=0.282 Sum_probs=20.9
Q ss_pred hCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 52 CGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 52 ~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
..++++|..|++|.|. .+.+.|.+.|+.+
T Consensus 81 va~Vk~G~ilfEi~g~----~~~~~a~eAlr~a 109 (118)
T 2ftc_I 81 VTPVKAGRLVVEMGGR----CEFEEVQGFLDQV 109 (118)
T ss_pred EEEECCCCEEEEEecc----CCHHHHHHHHHHH
Confidence 3447789999999882 4667777777654
No 206
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=37.30 E-value=29 Score=21.72 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=29.7
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 53 GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 53 g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+..|+.++-|+..-.++-|..++++.++..+
T Consensus 132 g~~~~Gk~VLIVDDvitTG~Tl~~a~~~L~~~G 164 (234)
T 3m3h_A 132 GKAEKGQKVVVVEDLISTGGSAITCVEALREAG 164 (234)
T ss_dssp SCCCTTCEEEEEEEEESSSHHHHHHHHHHHHTT
T ss_pred cccCCCCEEEEEecccchhHHHHHHHHHHHHCC
Confidence 457789999999999999999999999999765
No 207
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=35.24 E-value=33 Score=21.64 Aligned_cols=33 Identities=9% Similarity=0.224 Sum_probs=29.6
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 53 GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 53 g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+..|+.++-|+..-.++-|..++++.+++.+
T Consensus 144 g~~~~Gk~VLIVDDvitTG~Tl~~a~~~L~~~G 176 (243)
T 3dez_A 144 GRVTKGQKMVIIEDLISTGGSVLDAVAAAQREG 176 (243)
T ss_dssp SCCCTTCEEEEEEEEESSSHHHHHHHHHHHHTT
T ss_pred eccCCCCEEEEEEeeccccHHHHHHHHHHHHCC
Confidence 457789999999999999999999999999765
No 208
>2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens}
Probab=33.92 E-value=28 Score=21.01 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=28.8
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 53 GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 53 g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+..|..++-|+..-.++.|..++++.|+..+
T Consensus 106 g~~~~gk~VliVDDvitTG~Tl~~a~~~L~~~G 138 (205)
T 2wns_A 106 GTINPGETCLIIEDVVTSGSSVLETVEVLQKEG 138 (205)
T ss_dssp SCCCTTCBEEEEEEEESSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEEEEeccccHHHHHHHHHHHHCC
Confidence 446689999999999999999999999998764
No 209
>2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.25A {Escherichia coli K12}
Probab=33.59 E-value=34 Score=20.26 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=27.8
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+..|..++-|+..-.++.|...+++.|++++
T Consensus 123 ~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~G 153 (190)
T 2dy0_A 123 IKPGDKVLVVDDLLATGGTIEATVKLIRRLG 153 (190)
T ss_dssp CCTTCEEEEEEEEESSCHHHHHHHHHHHHTT
T ss_pred cCCcCEEEEEEccccchHHHHHHHHHHHHcC
Confidence 4578999999999999999999999998764
No 210
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=33.54 E-value=9.3 Score=22.80 Aligned_cols=27 Identities=0% Similarity=-0.229 Sum_probs=18.7
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 53 GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 53 g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.++++|..|++|.+.+ .+.|.+.|+.+
T Consensus 113 ArVk~G~ilfei~gv~-----~~~A~eAlr~A 139 (157)
T 1ffk_F 113 ARSHGANHDFIAWVNP-----DPAVEFAWRRA 139 (157)
T ss_pred EEEcCCCEEEEEeccC-----HHHHHHHHHHH
Confidence 4477899999998854 33666666654
No 211
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=32.29 E-value=7.4 Score=22.62 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=19.5
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 54 QLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 54 ~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
++++|..|++|.|. +.+.|.+.|+.+
T Consensus 95 ~Vk~G~ilfEi~g~-----~~~~A~eAlr~a 120 (136)
T 3r8s_M 95 LIQPGKVLYEMDGV-----PEELAREAFKLA 120 (136)
T ss_dssp EECTTCEEEEEESS-----CHHHHHHHHHHH
T ss_pred EECCCCEEEEEeCC-----CHHHHHHHHHHH
Confidence 46788899999883 667777777644
No 212
>1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1
Probab=31.89 E-value=32 Score=19.92 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=26.1
Q ss_pred CCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 57 IGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 57 ~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.|..++-|+..-.++.|...+++.|++++
T Consensus 119 ~gk~VllVDDvitTG~Tl~~~~~~L~~~G 147 (175)
T 1vch_A 119 LNQRVVLVSDVVASGETMRAMEKMVLRAG 147 (175)
T ss_dssp TTCEEEEEEEEESSSHHHHHHHHHHHHTT
T ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcC
Confidence 67899999999999999999999998764
No 213
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, STRU genomics, PSI, protein structure initative, midwest center structural genomics; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Probab=30.56 E-value=41 Score=19.93 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=27.6
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+..|..++-|+..-.++.|...+++.|++++
T Consensus 117 ~~~gk~VllVDDvitTG~Tl~~a~~~L~~~G 147 (197)
T 1y0b_A 117 LSDQDHVLIIDDFLANGQAAHGLVSIVKQAG 147 (197)
T ss_dssp CCTTCEEEEEEEEESSCHHHHHHHHHHHHTT
T ss_pred cCCcCEEEEEEcccccCHHHHHHHHHHHHCC
Confidence 4578999999999999999999999998764
No 214
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A
Probab=30.01 E-value=41 Score=19.81 Aligned_cols=31 Identities=13% Similarity=0.257 Sum_probs=27.7
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
...|..++-|+..-.++.|...+++.|++.+
T Consensus 119 ~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~G 149 (187)
T 1g2q_A 119 IPAGSNVIIVDDIIATGGSAAAAGELVEQLE 149 (187)
T ss_dssp SCTTCEEEEEEEEESSCHHHHHHHHHHHHTT
T ss_pred CCCcCEEEEECCCcccHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999998764
No 215
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold; HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1 PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Probab=29.79 E-value=45 Score=20.65 Aligned_cols=31 Identities=10% Similarity=0.247 Sum_probs=28.0
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+..|+.++-|+..-.++.|...+++.+++.+
T Consensus 135 ~~~Gk~VLIVDDvitTG~Tl~~a~~~L~~~G 165 (236)
T 1qb7_A 135 IGKGSRVVLIDDVLATGGTALSGLQLVEASD 165 (236)
T ss_dssp SCTTCEEEEEEEEESSCHHHHHHHHHHHHTT
T ss_pred CCCcCEEEEEecccccHHHHHHHHHHHHHcC
Confidence 5689999999999999999999999998764
No 216
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Probab=29.78 E-value=41 Score=19.59 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=27.5
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+..|..++-|+..-.++.|...+++.|++.+
T Consensus 117 ~~~gk~VllVDDvitTG~Tl~~~~~~L~~~G 147 (180)
T 1zn8_A 117 LEPGQRVVVVDDLLATGGTMNAACELLGRLQ 147 (180)
T ss_dssp SCTTCEEEEEEEEESSSHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEEcCCcccHHHHHHHHHHHHHcC
Confidence 4578899999999999999999999998764
No 217
>2w2g_A Non-structural protein 3; thiol protease, RNA replication, viral replicase, RNA-binding, zinc-finger, ribosomal frameshifting, hydrolase; 2.22A {Sars coronavirus} PDB: 2wct_A 2jwi_A 2jwj_A 2jzf_A 2rnk_A 2jzd_A 2jze_A
Probab=29.09 E-value=34 Score=21.69 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=29.9
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Q psy3490 54 QLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHL 87 (88)
Q Consensus 54 ~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~~ 87 (88)
.+.....+..+.|+-+.+.+.+|+..++|.++.+
T Consensus 89 kvk~d~~~t~~pgqg~~g~tl~e~~~~~k~~~~~ 122 (264)
T 2w2g_A 89 KVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSA 122 (264)
T ss_dssp TSCSSEEEECCTTCSTTSCCHHHHHHHHHHSSSE
T ss_pred hcchhhheeecCCccccceeHHHHHHHHhhCchh
Confidence 4677778899999999999999999999988764
No 218
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=29.03 E-value=7.2 Score=23.14 Aligned_cols=29 Identities=10% Similarity=0.179 Sum_probs=20.0
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 53 GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 53 g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
.++++|..|++|.+..+ +.+.|.+.|+.+
T Consensus 96 ArVk~G~ilfei~~~~v---~~~~A~eAlr~A 124 (151)
T 2pa2_A 96 ARVHIGQVIMSIRTKLQ---NKEHVIEALRRA 124 (151)
T ss_dssp EEECTTBEEEEEEECGG---GHHHHHHHHHHH
T ss_pred EEECCCCEEEEEECCCC---CHHHHHHHHHHH
Confidence 34778999999977444 566666776644
No 219
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1
Probab=28.21 E-value=40 Score=18.97 Aligned_cols=30 Identities=20% Similarity=0.158 Sum_probs=26.5
Q ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 56 NIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 56 ~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..|..++-|+..-.++.|...+++.|++.+
T Consensus 81 ~~gk~VllVDDvitTG~Tl~~a~~~L~~~g 110 (153)
T 1vdm_A 81 LKDKRVVIVDDVSDTGKTLEVVIEEVKKLG 110 (153)
T ss_dssp CBTCEEEEEEEEESSCHHHHHHHHHHHTTT
T ss_pred CCCCEEEEEecccCChHHHHHHHHHHHHcC
Confidence 468899999999999999999999998754
No 220
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, cataly transferase; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Probab=27.63 E-value=36 Score=20.10 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=27.3
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+..|..++-|+..-.++.|...+++.|++++
T Consensus 114 ~~~gk~VLLVDDVitTG~Tl~aa~~~L~~~G 144 (186)
T 1l1q_A 114 LGPHDVVLLHDDVLATGGTLLAAIELCETAG 144 (186)
T ss_dssp CCTTCCEEEEEEEESSSHHHHHHHHHHHHTT
T ss_pred CCCcCEEEEEecccccHHHHHHHHHHHHHcC
Confidence 4578899999999999999999999998764
No 221
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=27.32 E-value=42 Score=16.39 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=14.9
Q ss_pred ECCCCCHHHHHHHHHhCC
Q psy3490 68 SLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 68 ~~~~~~~~~~~~~lk~~~ 85 (88)
++.+++.++|.+.|+.++
T Consensus 12 dv~G~~~~~A~~~L~~~G 29 (71)
T 3ouv_A 12 DVAGQTVDVAQKNMNVYG 29 (71)
T ss_dssp CCTTCBHHHHHHHHHHTT
T ss_pred CcCCCCHHHHHHHHHHCC
Confidence 478899999999998753
No 222
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens}
Probab=26.52 E-value=93 Score=17.55 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=19.3
Q ss_pred EEEECCEECCCCCHHHHHHHHHh
Q psy3490 61 IIAVNGVSLVGLPLSTCQTYIKV 83 (88)
Q Consensus 61 i~~Vng~~~~~~~~~~~~~~lk~ 83 (88)
|+..||.++.+.++.+-.++|..
T Consensus 102 lL~l~G~~L~~~pl~eRr~~L~~ 124 (139)
T 3vnn_A 102 VLMVNNKKLGHETLRKRYEILSS 124 (139)
T ss_dssp EEEETTEECSSSCHHHHHHHHHH
T ss_pred EEeECCcCcccCCHHHHHHHHHH
Confidence 35779999999999998888764
No 223
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=26.24 E-value=36 Score=21.95 Aligned_cols=31 Identities=6% Similarity=0.218 Sum_probs=28.0
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+..|+.++-|++.-.++.|...+++.+++++
T Consensus 193 l~~Gk~VLIVDDViTTG~Tl~~a~~~L~~aG 223 (291)
T 1o57_A 193 MKTGSNVLIIDDFMKAGGTINGMINLLDEFN 223 (291)
T ss_dssp SCTTCEEEEEEEEESSSHHHHHHHHHTGGGT
T ss_pred CCCcCEEEEEEEEcCcHHHHHHHHHHHHHCC
Confidence 5689999999999999999999999998754
No 224
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis}
Probab=25.56 E-value=49 Score=20.66 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=27.9
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
...|++++-|+..-.++-+..++++.++..+
T Consensus 133 ~~~Gk~VLIVDDVitTG~Tl~~a~~~L~~~G 163 (232)
T 3mjd_A 133 DMTNKKVLLIDDVMTAGTAFYESYNKLKIIN 163 (232)
T ss_dssp CCTTCEEEEECSCCSSSHHHHHHHHHHHTTT
T ss_pred CCCCCEEEEEEeeccccHHHHHHHHHHHHCC
Confidence 4589999999999999999999999999764
No 225
>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A*
Probab=24.32 E-value=90 Score=18.88 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=22.5
Q ss_pred CCCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 55 LNIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
+-..|+++.++|.-+..- +.++|.++|+.
T Consensus 66 VigaDTvV~~~g~ilgKP~~~~eA~~mL~~ 95 (189)
T 1ex2_A 66 VIGADTMVCLDGECLGKPQDQEEAASMLRR 95 (189)
T ss_dssp EEEEEEEEEETTEEECCCSSHHHHHHHHHH
T ss_pred EEEeCeEEEECCEEcCCCCCHHHHHHHHHH
Confidence 334589999999987544 88899998874
No 226
>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}
Probab=24.10 E-value=1.2e+02 Score=20.95 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=28.5
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 53 GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 53 g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
+.+..|+.++-|+..-.++.|..++++.++..+
T Consensus 360 g~~~~G~~VliVDDvitTG~T~~~~~~~l~~~g 392 (453)
T 3qw4_B 360 GEYKKGDRVVIIDDLVSTGETKVEAIEKLRSAG 392 (453)
T ss_dssp SCCCTTCEEEEEEEEECC-CCHHHHHHHHHTTT
T ss_pred cccCCCCEEEEEeeeechhHHHHHHHHHHHHcC
Confidence 447789999999999999999999999999765
No 227
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae} PDB: 2pry_A* 2prz_A*
Probab=23.82 E-value=52 Score=20.13 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=27.1
Q ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 56 NIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 56 ~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
..|+.++-|+..-.++.|..++++.|+..+
T Consensus 123 i~Gk~VlIVDDvitTG~Tl~~a~~~L~~~G 152 (226)
T 2ps1_A 123 LENKRILIIDDVMTAGTAINEAFEIISNAK 152 (226)
T ss_dssp CTTCEEEEEEEEESSSHHHHHHHHHHHHTT
T ss_pred CCcCEEEEEEecccChHHHHHHHHHHHHcC
Confidence 389999999999999999999999998764
No 228
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=23.63 E-value=10 Score=22.98 Aligned_cols=28 Identities=7% Similarity=0.108 Sum_probs=19.9
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490 54 QLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 84 (88)
Q Consensus 54 ~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~ 84 (88)
++++|..|++|.+..+ +.+.|.+.|+.+
T Consensus 126 rVk~G~ilfei~~~~v---~~~~A~eAlr~A 153 (171)
T 1vq8_H 126 RVQAGEQLFTAYCNVE---DAEHVKEAFRRA 153 (171)
T ss_dssp EECTTCEEEEEEECTT---THHHHHHHHHHH
T ss_pred EECCCCEEEEEECcCC---CHHHHHHHHHHH
Confidence 4678899999877443 566777777654
No 229
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=23.14 E-value=92 Score=17.78 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=17.8
Q ss_pred cEEEEEECCCChhhhhCCCCCCCEEE
Q psy3490 37 TVVIANLAPAGAAARCGQLNIGDQII 62 (88)
Q Consensus 37 ~i~I~~v~~g~~a~~~g~l~~gd~i~ 62 (88)
.-||-++..|..+. .| +++||+|.
T Consensus 102 a~~VLEl~aG~~~~-~g-i~~Gd~v~ 125 (136)
T 3pjy_A 102 VAYVLELNAGTVKR-LG-VSPGDRLE 125 (136)
T ss_dssp EEEEEEEETTHHHH-HT-CCTTCEEE
T ss_pred eeEEEEeCcChHHh-cC-CCCCCEEE
Confidence 46888887775544 46 99999985
No 230
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=23.10 E-value=54 Score=20.97 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=11.3
Q ss_pred CChhhhhCCCCCCCEEEEECC
Q psy3490 46 AGAAARCGQLNIGDQIIAVNG 66 (88)
Q Consensus 46 g~~a~~~g~l~~gd~i~~Vng 66 (88)
||++.+.+.++.||.++-+.+
T Consensus 1 ~~~~~~~~~~~~Gd~V~~~~~ 21 (336)
T 2b25_A 1 GSSTSRERPFQAGELILAETG 21 (336)
T ss_dssp -------CCCCTTCEEEEEC-
T ss_pred CCCcccCCCCCCCCEEEEEeC
Confidence 466777788999999988744
No 231
>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protei; structural genomics, structural genomics consortium, unknown function; 2.00A {Homo sapiens}
Probab=22.73 E-value=97 Score=19.37 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=22.9
Q ss_pred CCCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 55 LNIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
+-..|+++.++|.-+..- +.++|.++|+.
T Consensus 75 VIgaDTvV~~dg~IlgKP~d~eeA~~mL~~ 104 (230)
T 2p5x_A 75 VIGADTIVTVGGLILEKPVDKQDAYRMLSR 104 (230)
T ss_dssp EEEEEEEEEETTEEECCCSSHHHHHHHHHH
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHH
Confidence 344699999999988544 88999999875
No 232
>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta motif, structural genomics, PSI, protein structure initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2
Probab=22.42 E-value=99 Score=19.00 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=22.8
Q ss_pred CCCCCEEEEECCEECCCC-CHHHHHHHHHh
Q psy3490 55 LNIGDQIIAVNGVSLVGL-PLSTCQTYIKV 83 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~-~~~~~~~~lk~ 83 (88)
+-..|+++.++|.-+..- +.++|.++|+.
T Consensus 85 VIgaDTvV~~~g~IlgKP~~~e~A~~mL~~ 114 (207)
T 2amh_A 85 ALTFDQVVVKGDEVREKPLSTEQCRSFIAS 114 (207)
T ss_dssp EEEEEEEEEETTEEECSCSSHHHHHHHHHH
T ss_pred EEEECeEEEECCEEcCCCCCHHHHHHHHHH
Confidence 344689999999987554 78999999875
No 233
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1
Probab=21.64 E-value=84 Score=18.86 Aligned_cols=32 Identities=6% Similarity=0.125 Sum_probs=28.0
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 54 QLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 54 ~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
....|..++-|+..-.++.|...+++.|++.+
T Consensus 113 ~~~~gk~VliVDDvitTG~Tl~~a~~~L~~~G 144 (211)
T 2aee_A 113 RVLKGQKMVIIEDLISTGGSVLDAAAAASREG 144 (211)
T ss_dssp CCCTTCEEEEEEEEESSCHHHHHHHHHHHHTT
T ss_pred CCCCcCEEEEEeecccchHHHHHHHHHHHHCC
Confidence 35678899999999999999999999998764
No 234
>1lh0_A OMP synthase; loop closure, monomer closure, orotate phosphoribosyltransferase; HET: ORO PRP; 2.00A {Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A* 1sto_A* 1oro_A
Probab=21.63 E-value=87 Score=18.92 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=26.6
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 55 LNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 55 l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
...| .++-|+..-.++.|..++++.+++.+
T Consensus 115 ~~~g-~VliVDDvitTG~Tl~~a~~~l~~~G 144 (213)
T 1lh0_A 115 ALQG-RVMLVDDVITAGTAIRESMEIIQAHG 144 (213)
T ss_dssp CCCS-EEEEECSCCSSSCHHHHHHHHHHHTT
T ss_pred CCCC-CEEEEEecccchHHHHHHHHHHHHCC
Confidence 4478 99999999999999999999998764
No 235
>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold, glycosyltransferase, magnesium, pyrimidine biosynthesis, structural genomics; 1.80A {Aeropyrum pernix}
Probab=20.85 E-value=65 Score=18.80 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=27.4
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490 54 QLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 85 (88)
Q Consensus 54 ~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~ 85 (88)
.+ .|..++-|+..-.++.|...+++.++..+
T Consensus 103 ~~-~gk~VllVDDvitTG~Tl~~~~~~L~~~G 133 (178)
T 2yzk_A 103 DP-PKGRVVVVDDVATTGTSIAKSIEVLRSNG 133 (178)
T ss_dssp CC-CSSEEEEEEEEESSSHHHHHHHHHHHHTT
T ss_pred cC-CCCEEEEEEeccCCcHHHHHHHHHHHHcC
Confidence 35 78899999999999999999999998764
No 236
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=20.07 E-value=57 Score=16.38 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=15.6
Q ss_pred CcCCCcccEEEEEECCCCCcccEE
Q psy3490 2 LHLNPVTSEIVVVPKAKGEILGVV 25 (88)
Q Consensus 2 ~~~~~~~~~~~~i~~~~~~~lG~~ 25 (88)
++.+.++.+.-.+-+++++.+|+-
T Consensus 31 vF~n~etg~~nVVYRR~dG~yGlI 54 (65)
T 3ka5_A 31 VFQNGDSNEVNVVYKRKDGNYGLI 54 (65)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEE
T ss_pred EEEeCCCCCEEEEEEeCCCCEEEE
Confidence 455666666666777766677763
Done!