RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3490
(88 letters)
>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF). PDZ
domains are found in diverse signaling proteins.
Length = 80
Score = 51.9 bits (125), Expect = 1e-10
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
V + K+ LG +V G P + ++ + P GAA G L GD+I+++NG L
Sbjct: 2 VTLEKSGRGGLGFSLVGGSDGD--PGIFVSEVLPGGAAEA-GGLQEGDRILSINGQDLEN 58
Query: 72 LPLSTCQTYIK 82
L +K
Sbjct: 59 LSHDEAVLALK 69
>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of
Eumetazoan signaling molecules, often in tandem
arrangements. May be responsible for specific
protein-protein interactions, as most PDZ domains bind
C-terminal polypeptides, and binding to internal
(non-C-terminal) polypeptides and even to lipids has
been demonstrated. In this subfamily of PDZ domains an
N-terminal beta-strand forms the peptide-binding groove
base, a circular permutation with respect to PDZ
domains found in proteases.
Length = 82
Score = 50.3 bits (121), Expect = 5e-10
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
V + K G LG + + ++ + P G A R G L +GD+I+ VNGVS+ G
Sbjct: 4 VTLRKDPGGGLGFSLRGGKDSGG--GIFVSRVEPGGPAER-GGLRVGDRILEVNGVSVEG 60
Query: 72 LPLSTCQTYIK 82
L +K
Sbjct: 61 LTHEEAVELLK 71
>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2. Also
called DHR (Dlg homologous region) or GLGF (relatively
well conserved tetrapeptide in these domains). Some
PDZs have been shown to bind C-terminal polypeptides;
others appear to bind internal (non-C-terminal)
polypeptides. Different PDZs possess different binding
specificities.
Length = 85
Score = 41.6 bits (98), Expect = 1e-06
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
+V + K G LG +V VV++++ P AA+ G L +GD I+ VNG S+
Sbjct: 4 LVELEK-GGGGLGFSLVGGKDEGG--GVVVSSVVPGSPAAKAG-LRVGDVILEVNGTSVE 59
Query: 71 GLPLSTCQTYIK 82
GL +K
Sbjct: 60 GLTHLEAVDLLK 71
>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant
zinc metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be
responsible for substrate recognition and/or binding,
as most PDZ domains bind C-terminal polypeptides, and
binding to internal (non-C-terminal) polypeptides and
even to lipids has been demonstrated. In this subfamily
of protease-associated PDZ domains a C-terminal
beta-strand forms the peptide-binding groove base, a
circular permutation with respect to PDZ domains found
in Eumetazoan signaling proteins.
Length = 79
Score = 34.1 bits (79), Expect = 0.001
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 31 WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
G VI + P AA+ G L GD+I+A+NG
Sbjct: 7 PGGPPIEPVIGEVVPGSPAAKAG-LKAGDRILAING 41
>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region)
or GLGF (after a conserved sequence motif). Many PDZ
domains bind C-terminal polypeptides, though binding to
internal (non-C-terminal) polypeptides and even to
lipids has been demonstrated. Heterodimerization
through PDZ-PDZ domain interactions adds to the
domain's versatility, and PDZ domain-mediated
interactions may be modulated dynamically through
target phosphorylation. Some PDZ domains play a role in
scaffolding supramolecular complexes. PDZ domains are
found in diverse signaling proteins in bacteria,
archebacteria, and eurkayotes. This CD contains two
distinct structural subgroups with either a N- or
C-terminal beta-strand forming the peptide-binding
groove base. The circular permutation placing the
strand on the N-terminus appears to be found in
Eumetazoa only, while the C-terminal variant is found
in all three kingdoms of life, and seems to co-occur
with protease domains. PDZ domains have been named
after PSD95(post synaptic density protein), DlgA
(Drosophila disc large tumor suppressor), and ZO1, a
mammalian tight junction protein.
Length = 70
Score = 32.7 bits (75), Expect = 0.003
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
VV+ ++ P A R G L GD I+AVNG + L L +K
Sbjct: 15 VVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLK 58
>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-,
tail-specific-, and tricorn proteases, which function
in posttranslational protein processing, maturation,
and disassembly or degradation, in Bacteria, Archaea,
and plant chloroplasts. May be responsible for
substrate recognition and/or binding, as most PDZ
domains bind C-terminal polypeptides, and binding to
internal (non-C-terminal) polypeptides and even to
lipids has been demonstrated. In this subfamily of
protease-associated PDZ domains a C-terminal
beta-strand forms the peptide-binding groove base, a
circular permutation with respect to PDZ domains found
in Eumetazoan signaling proteins.
Length = 85
Score = 31.4 bits (72), Expect = 0.012
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL 74
+VI ++ P AA+ G + GD I+A++G + GL L
Sbjct: 15 LVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSL 50
>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer
membrane].
Length = 406
Score = 31.9 bits (73), Expect = 0.021
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL 74
V + + AA+ G + GD II ++G S+ G+ L
Sbjct: 114 VKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSL 149
>gnl|CDD|236873 PRK11186, PRK11186, carboxy-terminal protease; Provisional.
Length = 667
Score = 31.8 bits (73), Expect = 0.025
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 39 VIANLAPAGAAARCGQLNIGDQIIAV 64
VI +L G AA+ +L++GD+I+ V
Sbjct: 258 VINSLVAGGPAAKSKKLSVGDKIVGV 283
>gnl|CDD|226483 COG3975, COG3975, Predicted protease with the C-terminal PDZ domain
[General function prediction only].
Length = 558
Score = 31.3 bits (71), Expect = 0.045
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
I + P G A + G L+ GD+I+A+NG+S
Sbjct: 463 HEKITFVFPGGPAYKAG-LSPGDKIVAINGISD 494
>gnl|CDD|232883 TIGR00225, prc, C-terminal peptidase (prc). A C-terminal
peptidase with different substrates in different
species including processing of D1 protein of the
photosystem II reaction center in higher plants and
cleavage of a peptide of 11 residues from the precursor
form of penicillin-binding protein in E.coli E.coli and
H influenza have the most distal branch of the tree and
their proteins have an N-terminal 200 amino acids that
show no homology to other proteins in the database
[Protein fate, Degradation of proteins, peptides, and
glycopeptides, Protein fate, Protein modification and
repair].
Length = 334
Score = 29.6 bits (67), Expect = 0.12
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL 74
+VI + A + G + GD+II +NG S+ G+ L
Sbjct: 64 IVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSL 99
>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine
proteases, such as DegP/HtrA, which are oligomeric
proteins involved in heat-shock response, chaperone
function, and apoptosis. May be responsible for
substrate recognition and/or binding, as most PDZ
domains bind C-terminal polypeptides, though binding to
internal (non-C-terminal) polypeptides and even to
lipids has been demonstrated. In this subfamily of
protease-associated PDZ domains a C-terminal
beta-strand forms the peptide-binding groove base, a
circular permutation with respect to PDZ domains found
in Eumetazoan signaling proteins.
Length = 90
Score = 28.8 bits (65), Expect = 0.15
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
V++A++ P AA+ G L GD I+AVNG
Sbjct: 26 VLVASVDPGSPAAKAG-LKPGDVILAVNGK 54
>gnl|CDD|177681 PLN00049, PLN00049, carboxyl-terminal processing protease;
Provisional.
Length = 389
Score = 28.9 bits (65), Expect = 0.28
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 18 KGEILGVVIVESGWG---SMLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
KG + GV +E G+ P VV+A AP G AAR G GD I+A++G S GL
Sbjct: 81 KGAVTGVG-LEVGYPTGSDGPPAGLVVVAP-APGGPAARAGIRP-GDVILAIDGTSTEGL 137
Query: 73 PL 74
L
Sbjct: 138 SL 139
>gnl|CDD|182774 PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/
dihydrofolate synthase; Provisional.
Length = 416
Score = 28.9 bits (65), Expect = 0.29
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 35 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
LP V + N A A AA R L + +Q I +G++ LP
Sbjct: 250 LPNVPLPNAATALAALRASGLEVSEQAI-RDGIASAILP 287
>gnl|CDD|238859 cd01821, Rhamnogalacturan_acetylesterase_like,
Rhamnogalacturan_acetylesterase_like subgroup of
SGNH-hydrolases. Rhamnogalacturan acetylesterase
removes acetyl esters from rhamnogalacturonan
substrates, and renders them susceptible to degradation
by rhamnogalacturonases. Rhamnogalacturonans are highly
branched regions in pectic polysaccharides, consisting
of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide
units, with many rhamnose residues substituted by
neutral oligosaccharides such as arabinans, galactans
and arabinogalactans. Extracellular enzymes
participating in the degradation of plant cell wall
polymers, such as Rhamnogalacturonan acetylesterase,
would typically be found in saprophytic and plant
pathogenic fungi and bacteria.
Length = 198
Score = 28.3 bits (64), Expect = 0.36
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 28 ESGWGSMLP-----TVVIANLAPAGAAAR 51
++GWG LP + + N A G ++R
Sbjct: 20 QAGWGQALPQYLDTGITVVNHAKGGRSSR 48
>gnl|CDD|238490 cd00990, PDZ_glycyl_aminopeptidase, PDZ domain associated with
archaeal and bacterial M61 glycyl-aminopeptidases. May
be responsible for substrate recognition and/or
binding, as most PDZ domains bind C-terminal
polypeptides, and binding to internal (non-C-terminal)
polypeptides and even to lipids has been demonstrated.
In this subfamily of protease-associated PDZ domains a
C-terminal beta-strand is presumed to form the
peptide-binding groove base, a circular permutation
with respect to PDZ domains found in Eumetazoan
signaling proteins.
Length = 80
Score = 27.4 bits (61), Expect = 0.41
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
+ + A + G L GD+++AVNG +
Sbjct: 14 GKVTFVRDDSPADKAG-LVAGDELVAVNGWRV 44
>gnl|CDD|225539 COG2992, Bax, Uncharacterized FlgJ-related protein [General
function prediction only].
Length = 262
Score = 27.6 bits (61), Expect = 0.71
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 11 IVVVPKAKGEILGVVIVESGWGS 33
+ V+P + +L ESGWG+
Sbjct: 133 VDVIPTSM--VLTQAAAESGWGT 153
>gnl|CDD|232801 TIGR00054, TIGR00054, RIP metalloprotease RseP. Members of this
nearly universal bacterial protein family are regulated
intramembrane proteolysis (RIP) proteases. Older and
synonymous gene symbols include yaeL in E. coli, mmpA in
Caulobacter crescentus, etc. This family includes a
region that hits the PDZ domain, found in a number of
proteins targeted to the membrane by binding to a
peptide ligand. The N-terminal region of this family
contains a perfectly conserved motif HEXGH as found in a
number of metalloproteinases, where the Glu is the
active site and the His residues coordinate the metal
cation [Protein fate, Degradation of proteins, peptides,
and glycopeptides].
Length = 419
Score = 26.7 bits (59), Expect = 1.4
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 12/68 (17%)
Query: 13 VVPKAKGEILGVVIVESGWGSMLPTV-----------VIANLAPAGAAARCGQLNIGDQI 61
+ GE + ++ E + V++++ P A + G L GD I
Sbjct: 168 QIADIAGEPMVEILAERENWTFEVMKELIPRGPKIEPVLSDVTPNSPAEKAG-LKEGDYI 226
Query: 62 IAVNGVSL 69
++NG L
Sbjct: 227 QSINGEKL 234
>gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Reviewed.
Length = 2890
Score = 26.8 bits (59), Expect = 1.5
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 4 LNPVTSEIVVVPKAK-GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGD 59
++P+T+EI++ E +VE+G S+ + AP G A+C LN+G+
Sbjct: 2214 IDPITNEILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGE 2270
>gnl|CDD|182723 PRK10779, PRK10779, zinc metallopeptidase RseP; Provisional.
Length = 449
Score = 26.6 bits (59), Expect = 1.5
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 39 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI 81
V+A + P AA++ G L GD+I+ V+G PL+ QT++
Sbjct: 224 VLAEVQPNSAASKAG-LQAGDRIVKVDGQ-----PLTQWQTFV 260
>gnl|CDD|216951 pfam02261, Asp_decarbox, Aspartate decarboxylase.
Decarboxylation of aspartate is the major route of
beta-alanine production in bacteria, and is catalyzed
by the enzyme aspartate decarboxylase EC:4.1.1.11 which
requires a pyruvoyl group for its activity. It is
synthesised initially as a proenzyme which is then
proteolytically cleaved to an alpha (C-terminal) and
beta (N-terminal) subunit and a pyruvoyl group. This
family contains both chains of aspartate decarboxylase.
Length = 115
Score = 26.2 bits (59), Expect = 1.6
Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Query: 47 GAAARCGQLNIGDQII 62
GAAAR Q GD +I
Sbjct: 72 GAAARLVQ--PGDLVI 85
>gnl|CDD|180090 PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional.
Length = 126
Score = 26.4 bits (59), Expect = 1.7
Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
Query: 47 GAAARCGQLNIGDQII 62
GAAAR Q +GD +I
Sbjct: 73 GAAARLVQ--VGDLVI 86
>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ
family. This family consists of a set proteins various
designated DegP, heat shock protein HtrA, and protease
DO. The ortholog in Pseudomonas aeruginosa is designated
MucD and is found in an operon that controls mucoid
phenotype. This family also includes the DegQ (HhoA)
paralog in E. coli which can rescue a DegP mutant, but
not the smaller DegS paralog, which cannot. Members of
this family are located in the periplasm and have
separable functions as both protease and chaperone.
Members have a trypsin domain and two copies of a PDZ
domain. This protein protects bacteria from thermal and
other stresses and may be important for the survival of
bacterial pathogens.// The chaperone function is
dominant at low temperatures, whereas the proteolytic
activity is turned on at elevated temperatures [Protein
fate, Protein folding and stabilization, Protein fate,
Degradation of proteins, peptides, and glycopeptides].
Length = 428
Score = 26.4 bits (59), Expect = 1.9
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
++A + P A + G L GD I +VNG
Sbjct: 259 ALVAQVLPGSPAEKAG-LKAGDVITSVNGK 287
>gnl|CDD|223343 COG0265, DegQ, Trypsin-like serine proteases, typically
periplasmic, contain C-terminal PDZ domain
[Posttranslational modification, protein turnover,
chaperones].
Length = 347
Score = 26.0 bits (57), Expect = 2.5
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
V+ + P AA+ G + GD I AVNG
Sbjct: 272 AVVLGVLPGSPAAKAG-IKAGDIITAVNGK 300
>gnl|CDD|132994 cd06919, Asp_decarbox, Aspartate alpha-decarboxylase or
L-aspartate 1-decarboxylase, a pyruvoyl group-dependent
decarboxylase in beta-alanine production.
Decarboxylation of aspartate is the major route of
beta-alanine production in bacteria, and is catalyzed
by the enzyme L-aspartate decarboxylase (ADC),
EC:4.1.1.11 which requires a pyruvoyl group for its
activity. The pyruvoyl cofactor is covalently bound to
the enzyme. The protein is synthesized as a proenzyme
and cleaved via self-processing at Gly23-Ser24 to yield
an alpha chain (C-terminal fragment) and beta chain
(N-terminal fragment), and the pyruvoyl group.
Beta-alanine is required for the biosynthesis of
pantothenate, in which the enzyme plays a critical
regulatory role. The active site of the tetrameric
enzyme is located at the interface of two subunits,
with a Lysine and a Histidine from the beta chain of
one subunit forming the active site with residues from
the alpha chain of the adjacent subunit. This
alignment model spans the precursor (or both beta and
alpha chains) of aspartate decarboxylase.
Length = 111
Score = 25.5 bits (57), Expect = 2.7
Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 2/16 (12%)
Query: 47 GAAARCGQLNIGDQII 62
GAAAR GQ GD++I
Sbjct: 72 GAAARLGQ--PGDRVI 85
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 25.9 bits (58), Expect = 3.1
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 37 TVVIANLAPA 46
V++ANLAP
Sbjct: 627 VVMVANLAPR 636
>gnl|CDD|223922 COG0853, PanD, Aspartate 1-decarboxylase [Coenzyme metabolism].
Length = 126
Score = 25.3 bits (56), Expect = 3.4
Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
Query: 47 GAAARCGQLNIGDQII 62
GAAAR Q +GD +I
Sbjct: 72 GAAARLVQ--VGDLVI 85
>gnl|CDD|148706 pfam07256, DUF1435, Protein of unknown function (DUF1435). This
family consists of several hypothetical Enterobacterial
proteins of around 80 residues in length. The function
of this family is unknown.
Length = 78
Score = 25.1 bits (55), Expect = 3.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 28 ESGWGSMLPTVVIANLAPAGAAA 50
SGWG +LP +I LA AG +A
Sbjct: 7 GSGWGVLLPGALIPGLAWAGLSA 29
>gnl|CDD|179469 PRK02755, truB, tRNA pseudouridine synthase B; Provisional.
Length = 295
Score = 25.3 bits (56), Expect = 4.2
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 1 MLHLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANL 43
+ N VVV A G LG+ ++E G + P VV +
Sbjct: 253 IPLENLPAGGAVVVYDADGRFLGIGLIEQD-GLLKPKVVFEAI 294
>gnl|CDD|223821 COG0750, COG0750, Predicted membrane-associated Zn-dependent
proteases 1 [Cell envelope biogenesis, outer membrane].
Length = 375
Score = 24.8 bits (54), Expect = 6.8
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
+L VV+ + + V+ +AP AAA G L GD+I+AV+G
Sbjct: 114 VLFVVLFFVIGLVPVASPVVGEVAPKSAAALAG-LRPGDRIVAVDG 158
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,472,341
Number of extensions: 371768
Number of successful extensions: 378
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 39
Length of query: 88
Length of database: 10,937,602
Length adjustment: 56
Effective length of query: 32
Effective length of database: 8,453,778
Effective search space: 270520896
Effective search space used: 270520896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)