RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3490
(88 letters)
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 88.6 bits (220), Expect = 4e-25
Identities = 42/72 (58%), Positives = 53/72 (73%)
Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
V + K +GE LGV +VESGWGS+LPT VIANL G A R G L+IGD++ A+NG SLV
Sbjct: 12 EVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLV 71
Query: 71 GLPLSTCQTYIK 82
GLPL+ CQ ++
Sbjct: 72 GLPLAACQAAVR 83
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 75.4 bits (184), Expect = 6e-18
Identities = 47/69 (68%), Positives = 59/69 (85%)
Query: 14 VPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
+ K KGEILGVV+VESGWGS+LPTV++AN+ G AAR G+L+IGDQI+++NG SLVGLP
Sbjct: 210 LEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLP 269
Query: 74 LSTCQTYIK 82
L+TCQ IK
Sbjct: 270 LATCQGIIK 278
Score = 50.0 bits (118), Expect = 7e-09
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
PVT+ ++ P K G + +I +L G A R G + +G +II
Sbjct: 292 SCPPVTTVLIKRPDLKY----------QLGFSVQNGIICSLMRGGIAERGG-VRVGHRII 340
Query: 63 AVNGVSLVGLPLSTCQTYIK 82
+NG S+V +
Sbjct: 341 EINGQSVVATAHEKIVQALS 360
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 70.9 bits (174), Expect = 7e-18
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 6 PVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
+ + V + + K E + +E G S + VV++ + GAA R G + GD+I+A+N
Sbjct: 13 QIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAIN 72
Query: 66 GVSLVGLPLSTCQTYIK 82
G + L+ + ++
Sbjct: 73 GKIVTDYTLAEAEAALQ 89
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 68.9 bits (169), Expect = 2e-17
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
H + ++ K E +G+ + + S +A + G R G L++GD+I+
Sbjct: 7 HHSGHMVRLIQFEKVTEEPMGICLKLNEKQS----CTVARILHGGMIHRQGSLHVGDEIL 62
Query: 63 AVNGVSLVGLPLSTCQTYIK 82
+NG ++ + Q +K
Sbjct: 63 EINGTNVTNHSVDQLQKAMK 82
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 64.7 bits (158), Expect = 1e-15
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
+V K E +G+ + + ++A + G R G L++GD+I +NG+S+
Sbjct: 4 LVQFQKNTDEPMGITLKMNELNH----CIVARIMHGGMIHRQGTLHVGDEIREINGISVA 59
Query: 71 GLPLSTCQTYIK 82
+ Q ++
Sbjct: 60 NQTVEQLQKMLR 71
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 113
Score = 64.8 bits (158), Expect = 2e-15
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
H T +IV + KA+ LG + +V+I+ + GAA + G L+ GD+++
Sbjct: 20 HYGGETVKIVRIEKARDIPLGATVRNEM-----DSVIISRIVKGGAAEKSGLLHEGDEVL 74
Query: 63 AVNGVSLVGLPLSTCQTYIK 82
+NG+ + G ++ +
Sbjct: 75 EINGIEIRGKDVNEVFDLLS 94
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 65.5 bits (160), Expect = 4e-15
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 6 PVTSEIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
+ E + + + LG I ++ P++ I + P GAAA+ G+L + D I+
Sbjct: 3 SMEYEEITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 61
Query: 63 AVNGVSLVGLPLSTCQTYIK 82
VN V + + S +K
Sbjct: 62 FVNEVDVREVTHSAAVEALK 81
Score = 53.2 bits (128), Expect = 2e-10
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPT---VVIANLAPAGAAARCGQLNIGD 59
P + + + LG I +P + + + GAA + G+L IGD
Sbjct: 94 RKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGD 153
Query: 60 QIIAVNGVSLVGLPLSTCQTYIK 82
+I+AVN V L + +K
Sbjct: 154 KILAVNSVGLEDVMHEDAVAALK 176
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 65.6 bits (160), Expect = 5e-15
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
VV+ G+ + S + + + +I+ + A RCG L IGD+++A+NG+
Sbjct: 10 VVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPT 69
Query: 70 VGLPLSTCQTYIK 82
++
Sbjct: 70 EDSTFEEANQLLR 82
Score = 59.4 bits (144), Expect = 9e-13
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
V +PK LG+ I +VI+++ A R G L +GD+++A++ + L
Sbjct: 111 VKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDS 170
Query: 72 LPLSTCQTYIK 82
+ ++
Sbjct: 171 CSMEDAVQILQ 181
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex,
PDZ tandem, alternative splicing, cell junction,
cytoplasm; 2.30A {Rattus norvegicus}
Length = 200
Score = 64.8 bits (158), Expect = 9e-15
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
+V + K +G LG+ + G ++NL G AAR QL++GD I AVNG++L
Sbjct: 9 TVVELMKKEGTTLGLTVS--GGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINL 66
Query: 70 VGLPLSTCQTYIK 82
+ +K
Sbjct: 67 AKFRHDEIISLLK 79
Score = 53.6 bits (129), Expect = 1e-10
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 13 VVPKAKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
V +G G VI + VVI + P G A R G + GD++++V+G+ L+
Sbjct: 110 VTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLL 169
Query: 71 GLPLSTCQTYIK 82
G + + +K
Sbjct: 170 GTTHAEAMSILK 181
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 60.9 bits (148), Expect = 6e-14
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
+V + K G LG+ + + + I + PA R G L+ GD I++++G S+
Sbjct: 18 MVEIVKTPGSALGISLT-TTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSME 76
Query: 71 GL 72
Sbjct: 77 HC 78
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 60.2 bits (146), Expect = 9e-14
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 2 LHLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQI 61
L+ + V + K ++G+ I G P + I + AA G + GD+I
Sbjct: 18 LYFQSMVPGKVTLQKDAQNLIGISIG--GGAQYCPCLYIVQVFDNTPAALDGTVAAGDEI 75
Query: 62 IAVNGVSLVGL 72
VNG S+ G
Sbjct: 76 TGVNGRSIKGK 86
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide;
peptide binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 59.3 bits (144), Expect = 2e-13
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
V + K G+ LG+ + + G IA+L +L GD I NG +L G
Sbjct: 6 VDLMKKAGKELGLSLSPNEIG-----CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEG 60
Query: 72 LPLSTCQTYIK 82
LP C K
Sbjct: 61 LPFQVCYALFK 71
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain,
scaffolding protein, membrane, sensory transduction,
vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A
2qku_A
Length = 96
Score = 58.9 bits (143), Expect = 2e-13
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
V + K G+ LG+ + + G IA+L +L GD I NG +L G
Sbjct: 12 VDLMKKAGKELGLSLSPNEIG-----CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEG 66
Query: 72 LPLSTCQTYIK 82
LP K
Sbjct: 67 LPFQVSYALFK 77
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 58.9 bits (143), Expect = 3e-13
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 2 LHLNPVTSEIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIG 58
L+ + ++V + K GE LG+ + + + + ++ P G +R G++ G
Sbjct: 18 LYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDL--PIYVISVEPGGVISRDGRIKTG 75
Query: 59 DQIIAVNGVSLVGL 72
D ++ V+GV L +
Sbjct: 76 DILLNVDGVELTEV 89
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 60.7 bits (147), Expect = 4e-13
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 7 VTSEIVVVPKAKG-EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
++ +++ + +GV++ + VI ++ P G A +L I D I +N
Sbjct: 15 KPNKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDIN 74
Query: 66 GVSLVGLPLSTCQ 78
G + ++T +
Sbjct: 75 GTPIHVGSMTTLK 87
Score = 58.4 bits (141), Expect = 3e-12
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
V + K G+ LG+ + + G IA+L +L GD I NG +L G
Sbjct: 117 VDLMKKAGKELGLSLSPNEIG-----CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEG 171
Query: 72 LPLSTCQTYIK 82
LP C K
Sbjct: 172 LPFQVCYALFK 182
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 58.6 bits (142), Expect = 5e-13
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 12 VVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
VV+ + + E G VI+ ESG +P I + A RC +L +GD+I+AVN
Sbjct: 14 VVIHRKENEGFGFVIISSLNRPESGSTITVP-HKIGRIIDGSPADRCAKLKVGDRILAVN 72
Query: 66 GVSLVGLPLSTCQTYIK 82
G S++ +P + IK
Sbjct: 73 GQSIINMPHADIVKLIK 89
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 59.5 bits (144), Expect = 6e-13
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
V++ K + +G+ + G + + + A+ G L GDQ++ +NG + G
Sbjct: 8 VILCKDQDGKIGLRLKSIDNG-----IFVQLVQANSPASLVG-LRFGDQVLQINGENCAG 61
Query: 72 LPLSTCQTYIK 82
+K
Sbjct: 62 WSSDKAHKVLK 72
Score = 33.3 bits (76), Expect = 0.004
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
+ + I G + I ++ +AAR G L I +NG +++
Sbjct: 82 TIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNG-LLTEHNICEINGQNVI 140
Query: 71 GLPLS 75
GL S
Sbjct: 141 GLKDS 145
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 57.3 bits (139), Expect = 1e-12
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 12 VVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
V + K + G+ IV + + + I + P A CG+L +GD+I+++NG
Sbjct: 9 VTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGK 68
Query: 68 SLVGL 72
+
Sbjct: 69 DVRNS 73
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 57.5 bits (139), Expect = 2e-12
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 6 PVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
P V + K ++G+ I G + I + AA G + GD+I VN
Sbjct: 17 PTVPGKVTLQKDAQNLIGISIG-GGAQYCPC-LYIVQVFDNTPAALDGTVAAGDEITGVN 74
Query: 66 GVSLVGL 72
G S+ G
Sbjct: 75 GRSIKGK 81
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 57.4 bits (139), Expect = 2e-12
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 12 VVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
V + + G+ LG+ IV + + + ++ P AA G + + D+I+AV+GV+
Sbjct: 19 VELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVN 78
Query: 69 LVGLP 73
+ G
Sbjct: 79 IQGFA 83
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 56.7 bits (137), Expect = 2e-12
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 31 VLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 88
Query: 72 L 72
Sbjct: 89 T 89
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing
isoform B; GOPC PDZ domain, structural protein; NMR
{Homo sapiens}
Length = 103
Score = 56.2 bits (136), Expect = 3e-12
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 12 KVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 69
Query: 71 GL 72
Sbjct: 70 DT 71
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 56.3 bits (136), Expect = 4e-12
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 2 LHLNPVTSEIVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQ 54
L+ + V + + + LG+ IV G ++ + I ++ A + G
Sbjct: 18 LYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGT 77
Query: 55 LNIGDQIIAVNGVSLVGL 72
L GD+I+ V+G+ L
Sbjct: 78 LKPGDRIVEVDGMDLRDA 95
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 55.7 bits (135), Expect = 4e-12
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 8 TSEIVVVPKAKG-EILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 63
+ V V K G VI P VVI ++ P G A R G + GD++++
Sbjct: 1 SMRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRP-VVITSVRPGGPADREGTIKPGDRLLS 59
Query: 64 VNGVSLVGL 72
V+G+ L+G
Sbjct: 60 VDGIRLLGT 68
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 55.5 bits (134), Expect = 4e-12
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
+V + K GE LGV G +VIA + G A+ G L++GD I VNG V
Sbjct: 9 MVGIRKTAGEHLGVTFRVEG-----GELVIARILHGGMVAQQGLLHVGDIIKEVNGQP-V 62
Query: 71 GLPLSTCQTYIK 82
G Q ++
Sbjct: 63 GSDPRALQELLR 74
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1qav_B
Length = 112
Score = 55.9 bits (135), Expect = 4e-12
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
V + K K LG ++ E P V+I++L GAA + G + GD I+AVN LV
Sbjct: 5 VRLFKRKVGGLGFLVKE---RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD 61
Query: 72 L 72
L
Sbjct: 62 L 62
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 55.5 bits (134), Expect = 5e-12
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
+V K LG+ I G + P I + G+A CGQL +G I+ VNG++L G
Sbjct: 9 LVRVKKSAATLGIAIE-GGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRG 67
Query: 72 L 72
Sbjct: 68 K 68
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 55.8 bits (135), Expect = 5e-12
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 12 VVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
V + K + LG+ I S G + + IA + P G AA+ +L +GD+I+ + G S
Sbjct: 28 VEMKKGPTDSLGISIAGGVGSPLGDV--PIFIAMMHPTGVAAQTQKLRVGDRIVTICGTS 85
Query: 69 LVGL 72
G+
Sbjct: 86 TEGM 89
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 55.4 bits (134), Expect = 6e-12
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 1 MLHLNPVTSEIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNI 57
L + EI+ V K +G+ IV +G + + + ++ GAA G+L
Sbjct: 2 PLGSDHKEPEIITVTLKKQNGMGLSIVAAKGAGQDKL--GIYVKSVVKGGAADVDGRLAA 59
Query: 58 GDQIIAVNGVSLVGL 72
GDQ+++V+G SLVGL
Sbjct: 60 GDQLLSVDGRSLVGL 74
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 55.5 bits (134), Expect = 8e-12
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
+ ++ K +G LG + G + + + P G A++ G + G++++++NG SL
Sbjct: 17 HVTILHKEEGAGLGFSLA-GGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSL 75
Query: 70 VGL 72
G
Sbjct: 76 KGT 78
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 54.7 bits (132), Expect = 1e-11
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 10 EIVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
V + + + LG+ IV G ++ + I ++ A + G L GD+I+
Sbjct: 6 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIV 65
Query: 63 AVNGVSLVGL 72
V+G+ L
Sbjct: 66 EVDGMDLRDA 75
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 126
Score = 54.9 bits (132), Expect = 2e-11
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 9 SEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
++++ G + LG+V++++G P + I++L GAAA G L GD +I+V
Sbjct: 26 NKVIQTKLTVGNLGLGLVVIQNG-----PYLQISHLINKGAAASDGILQPGDVLISVGHA 80
Query: 68 SLVGLPLS 75
+++G L
Sbjct: 81 NVLGYTLR 88
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 54.8 bits (132), Expect = 2e-11
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 10 EIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
+ VP+ G +LG+ +V + G + I + A G L GD+++ NG
Sbjct: 38 KDGSVPRDSGAMLGLKVVGGKMTESGRL--CAFITKVKKGSLADTVGHLRPGDEVLEWNG 95
Query: 67 VSLVGL 72
L G
Sbjct: 96 RLLQGA 101
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 54.0 bits (130), Expect = 2e-11
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ V K G LG+ I+ + P V I + P G + G+L GDQ++++N S+
Sbjct: 17 RVITVTKETG--LGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESM 74
Query: 70 VGL 72
+G+
Sbjct: 75 IGV 77
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS,
nitric oxide synthase, oxidoreductase; NMR {Rattus
norvegicus} SCOP: b.36.1.1
Length = 127
Score = 54.5 bits (131), Expect = 2e-11
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
V + K K LG ++ E P V+I++L GAA + G + GD I+AVN LV
Sbjct: 12 VRLFKRKVGGLGFLVKE---RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD 68
Query: 72 L 72
L
Sbjct: 69 L 69
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 56.3 bits (135), Expect = 2e-11
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
V V KA LG+ I G + +P ++I+ + AA + L +GD I++VNG L
Sbjct: 79 RRVTVRKADAGGLGISIK-GGRENKMP-ILISKIFKGLAADQTEALFVGDAILSVNGEDL 136
Query: 70 VGLP 73
Sbjct: 137 SSAT 140
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 53.5 bits (129), Expect = 3e-11
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ + + GE LG+ +V + P V I +L G AA+ G+L+ D+++A+NG L
Sbjct: 6 QVALHKRDSGEQLGIKLVR---RTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDL 62
Query: 70 VGL 72
Sbjct: 63 KYG 65
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 53.4 bits (129), Expect = 3e-11
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
V V KA LG+ I G + +P ++I+ + AA + L +GD I++VNG L
Sbjct: 8 VTVRKADAGGLGISIK-GGRENKMP-ILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 65
Query: 72 L 72
Sbjct: 66 A 66
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 53.9 bits (130), Expect = 3e-11
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 12 VVVPKAKGEILGVVIV---ESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAV 64
+ + KA GE LG+ I G+ + I+ ++P GAA R G+L +G +++ V
Sbjct: 13 LCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEV 72
Query: 65 NGVSLVGL 72
N SL+GL
Sbjct: 73 NQQSLLGL 80
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 54.0 bits (130), Expect = 3e-11
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 5 NPVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 63
+ E+ ++ K + LG+ + ++ + + P G AA G++ IGD+++
Sbjct: 20 ADLPGELHIIELEKDKNGLGLSLA-GNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLE 78
Query: 64 VNGVSLVGL 72
+N L G
Sbjct: 79 INNQILYGR 87
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 53.9 bits (130), Expect = 3e-11
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 6 PVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
V + +++ +KG LG+ IV G + L +VI + GAAAR G+L GDQI+ V
Sbjct: 13 IVPGQEMIIEISKGRSGLGLSIV-GGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEV 71
Query: 65 NGVSLVGLP 73
NGV L
Sbjct: 72 NGVDLRNSS 80
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 53.4 bits (129), Expect = 4e-11
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 6 PVTSEIVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQI 61
P +I V AK + LG+ + + + + + P GAA G+++ GD++
Sbjct: 1 PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHG--GIYVKAVIPQGAAESDGRIHKGDRV 58
Query: 62 IAVNGVSLVGL 72
+AVNGVSL G
Sbjct: 59 LAVNGVSLEGA 69
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 53.6 bits (129), Expect = 4e-11
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 3 HLNPVTSEIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGD 59
H + G LG+ IV E S IA + P G+A + G+L G
Sbjct: 13 HARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGM 72
Query: 60 QIIAVNGVSLVGL 72
Q++ NG+ L
Sbjct: 73 QVLEWNGIPLTSK 85
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 53.5 bits (129), Expect = 4e-11
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 10 EIVVVPKAKGEI-LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAV 64
E+ V K LG+ I+ G G+ + + + + GAA R G++ + D ++ V
Sbjct: 4 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 63
Query: 65 NGVSLVGL 72
+G SLVG+
Sbjct: 64 DGTSLVGV 71
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 54.6 bits (131), Expect = 5e-11
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 10 EIVVVPKAKGEI-LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAV 64
E+ V K LG+ I+ G G+ + + + + GAA R G++ + D ++ V
Sbjct: 80 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 139
Query: 65 NGVSLVGL 72
+G SLVG+
Sbjct: 140 DGTSLVGV 147
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 53.2 bits (128), Expect = 5e-11
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 10 EIVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
IV + + LG+ IV G L + I + A + L GD+I+
Sbjct: 17 RIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKIL 76
Query: 63 AVNGVSLVGL 72
V+GV L
Sbjct: 77 EVSGVDLQNA 86
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 53.1 bits (128), Expect = 5e-11
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 6 PVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
+ + + LG+ I G ++I++L G A R G ++IGD+I+A+N
Sbjct: 4 AIIYTVELKRYGGP--LGITIS--GTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAIN 59
Query: 66 GVSLVGLPLS 75
SL G PLS
Sbjct: 60 SSSLKGKPLS 69
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 53.1 bits (128), Expect = 5e-11
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 10 EIVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
V + + K LG+ I + + + +L P AAA G++ D+I+ V+
Sbjct: 14 YSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVD 73
Query: 66 GVSLVGL 72
V++ G+
Sbjct: 74 DVNVQGM 80
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 52.6 bits (127), Expect = 6e-11
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
+ + K G+ LG+ IV V ++++ G A G+L GDQI+ VNG +
Sbjct: 8 IGLQKKPGKGLGLSIVG---KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRN 64
Query: 72 L 72
Sbjct: 65 A 65
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 52.3 bits (126), Expect = 7e-11
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 7 VTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
+ +I + K G G I+ G P + I ++ P GAA G+L GD++I+V+G
Sbjct: 2 MEQDIFLWRKETG--FGFRIL-GGNEPGEP-IYIGHIVPLGAADTDGRLRSGDELISVDG 57
Query: 67 VSLVGL 72
++G
Sbjct: 58 TPVIGK 63
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1,
HOST-virus interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 51.9 bits (125), Expect = 1e-10
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 8 TSEIVVVPKAKGEI-LGVVIV--ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
SE V K LG+ I + + ++ + A G++ IGDQIIAV
Sbjct: 2 MSETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAV 61
Query: 65 NGVSLVGL 72
+G +L G
Sbjct: 62 DGTNLQGF 69
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 51.9 bits (125), Expect = 1e-10
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 22 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
LG+ IV G ++L ++I + GAA + G+L GDQI+ VNG+ L
Sbjct: 17 LGLSIV-GGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKAT 67
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L
homolog; PDZ domain, cellular signaling, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 52.5 bits (126), Expect = 1e-10
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
VV+ G+ + S + + + +I+ + A RCG L IGD+++A+NG+
Sbjct: 19 VVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPT 78
Query: 70 VGLPLSTCQTYIK 82
++
Sbjct: 79 EDSTFEEANQLLR 91
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural
genomics, PDZ domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Length = 127
Score = 52.5 bits (126), Expect = 1e-10
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 12 VVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
+ + + LGV + G+ L + I ++ GAA + G+L + DQ+IAVNG +
Sbjct: 29 IPLNDSGSAGLGVSLKGNKSRETGTDLG-IFIKSIIHGGAAFKDGRLRMNDQLIAVNGET 87
Query: 69 LVGL 72
L+G
Sbjct: 88 LLGK 91
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 51.9 bits (125), Expect = 2e-10
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 10 EIVVVPKAKGEI-LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAV 64
E+ V K E LG+ I+ G G+ + + + GAA R G++ + DQI+ V
Sbjct: 9 ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 68
Query: 65 NGVSLVGL 72
+G+SLVG+
Sbjct: 69 DGISLVGV 76
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 52.0 bits (125), Expect = 2e-10
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 6 PVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIG 58
P +I V AK + LG+ + + T + + + P GAA G+++ G
Sbjct: 5 PKPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKG 64
Query: 59 DQIIAVNGVSLVGL 72
D+++AVNGVSL G
Sbjct: 65 DRVLAVNGVSLEGA 78
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A*
1mc7_A
Length = 108
Score = 51.7 bits (124), Expect = 2e-10
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
V + K LG+ IV + I ++ GA A G++ GD ++ VN ++
Sbjct: 9 VTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68
Query: 72 L 72
+
Sbjct: 69 M 69
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA,
structural genomics, riken structural
genomics/proteomics initiative, unknown function; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 110
Score = 51.6 bits (124), Expect = 2e-10
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 5 NPVTSEIVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQ 60
+ + + V +G LG+ ++ + G+ P + I L P AA G+L++GD+
Sbjct: 3 SGSSGYVFTVELERGPSGLGMGLIDGMHTHLGA--PGLYIQTLLPGSPAAADGRLSLGDR 60
Query: 61 IIAVNGVSLVGL 72
I+ VNG SL+GL
Sbjct: 61 ILEVNGSSLLGL 72
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 52.1 bits (125), Expect = 2e-10
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 15 PKAKGEILGVVIV--ESGWG-------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
+ KG+ + + G+G + I +L G AA G++ GD I++VN
Sbjct: 13 SELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVN 72
Query: 66 GVSLVGL 72
++G
Sbjct: 73 DTCVLGH 79
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 51.5 bits (124), Expect = 2e-10
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
+ + L G A RCG+L +GD ++ +NG S GL
Sbjct: 40 LAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGL 74
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 51.7 bits (124), Expect = 3e-10
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 5 NPVTSEIVVVPKAKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQII 62
+ + + G LG + G GS+ + I + A+ + + GD+I+
Sbjct: 27 EATVCTVTLEKMSAG--LGFSLE-GGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEIL 83
Query: 63 AVNGVSLVGL 72
+ G ++ GL
Sbjct: 84 QLGGTAMQGL 93
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 53.8 bits (128), Expect = 3e-10
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 8 TSEIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
E + + + LG I ++ P++ I + P GAAA+ G+L + D I+ V
Sbjct: 59 EYEEITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 117
Query: 65 NGVSLVGLPLSTCQTYIK 82
N V + + S +K
Sbjct: 118 NEVDVREVTHSAAVEALK 135
Score = 48.4 bits (114), Expect = 2e-08
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 1 MLHLNPVTSEIVVVPKAKG-EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGD 59
+L + E + +G LG IV G + I+ + G A G+L GD
Sbjct: 298 LLGEEDIPREPRRIVIHRGSTGLGFNIV---GGEDGEGIFISFILAGGPADLSGELRKGD 354
Query: 60 QIIAVNGVSLVGLPLSTCQTYIK 82
QI++VNGV L +K
Sbjct: 355 QILSVNGVDLRNASHEQAAIALK 377
Score = 39.5 bits (91), Expect = 3e-05
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+ + + GAA + G+L IGD+I+AVN V L + +K
Sbjct: 186 IYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK 230
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 51.2 bits (123), Expect = 3e-10
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 5 NPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
++ + G G I+ G P ++I + G+A R G+L+ GD+++ V
Sbjct: 7 GYKELDVHLRRMESG--FGFRIL-GGDEPGQP-ILIGAVIAMGSADRDGRLHPGDELVYV 62
Query: 65 NGVSLVGLP 73
+G+ + G
Sbjct: 63 DGIPVAGKT 71
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 51.6 bits (124), Expect = 3e-10
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 10 EIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
E+ + K LG +V G + + + + A R G+L DQI+A+NG
Sbjct: 22 EVFELLKPPSGGLGFSVVGLRSENRGEL--GIFVQEIQEGSVAHRDGRLKETDQILAING 79
Query: 67 VSL 69
+L
Sbjct: 80 QAL 82
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 51.4 bits (123), Expect = 3e-10
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
E+ + + LG+ + + I+ + P AA+ G++ GD+II +NG+ +
Sbjct: 22 EVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEV 81
Query: 70 VG 71
Sbjct: 82 QN 83
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; transferase, STRU genomics, structural
genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A
{Homo sapiens}
Length = 112
Score = 51.2 bits (123), Expect = 3e-10
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+ + LA G A R G++ IGD+I+ +NG + + S IK
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIK 95
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 50.5 bits (121), Expect = 4e-10
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ +V AK E G+ + + + ++ AAR G + GD ++ +NG
Sbjct: 5 KVTLVKSAKNEEYGLRLASH--------IFVKEISQDSLAARDGNIQEGDVVLKINGTVT 56
Query: 70 VGLPLSTCQTYIK 82
+ L+ +T I+
Sbjct: 57 ENMSLTDAKTLIE 69
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight
junctions, PATJ, structural genomics; NMR {Homo
sapiens}
Length = 128
Score = 51.3 bits (123), Expect = 4e-10
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 10 EIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
E + + + LG +V G + + + ++ P A R +L DQI+A+N
Sbjct: 27 EYIDIERPSTGGLGFSVVALRSQNLGKV--DIFVKDVQPGSVADRDQRLKENDQILAINH 84
Query: 67 VSL 69
L
Sbjct: 85 TPL 87
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 51.2 bits (123), Expect = 4e-10
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
+ + + GAA+ G+L GDQIIAVNG SL G+
Sbjct: 55 IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGV 89
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens}
PDB: 3nfl_A 2vph_A
Length = 107
Score = 51.0 bits (122), Expect = 4e-10
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSL 69
++ + + G + G+ +P V+++ +AP A C +LN GDQ++ +NG +
Sbjct: 20 LIRMKPDENGRFGFNVK-GGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDI 77
Query: 70 VGL 72
Sbjct: 78 AEH 80
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 50.4 bits (121), Expect = 6e-10
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
+ + AKG G I G + + + LA G A R G++ +GDQII +NG S
Sbjct: 14 TVDMEKGAKG--FGFSIR-GGREYKMD-LYVLRLAEDGPAIRNGRMRVGDQIIEINGEST 69
Query: 70 VGL 72
+
Sbjct: 70 RDM 72
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 49.6 bits (119), Expect = 6e-10
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ +V K E G+ + + + ++ AAR G + GD ++ +NG
Sbjct: 3 KVTLVKSRKNEEYGLRLASH--------IFVKEISQDSLAARDGNIQEGDVVLKINGTVT 54
Query: 70 VGLPLSTCQTYIK 82
+ L+ +T I+
Sbjct: 55 ENMSLTDAKTLIE 67
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 50.0 bits (120), Expect = 6e-10
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
I+ + K E LG I + +++A + GAA R G +++GD++ VNG+ +
Sbjct: 7 IIRLVK-NREPLGATIKK---DEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVE 62
Query: 71 GLPLSTCQTYIK 82
+
Sbjct: 63 DKRPEEIIQILA 74
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex,
peptide binding protein; 1.54A {Rattus norvegicus}
SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 50.5 bits (121), Expect = 7e-10
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 2 LHLNPVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQ 60
L + E + +G LG IV G G + I+ + G A G+L GDQ
Sbjct: 6 LGEEDIPREPRRIVIHRGSTGLGFNIV--G-GEDGEGIFISFILAGGPADLSGELRKGDQ 62
Query: 61 IIAVNGVSLVGL 72
I++VNGV L
Sbjct: 63 ILSVNGVDLRNA 74
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 50.5 bits (121), Expect = 7e-10
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 6 PVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
+ + K + G I+ G + + ++ P G AA+ G++ GD I+ +
Sbjct: 15 QLKGTFLSTTLKKSNMGFGFTII--GGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYI 72
Query: 65 NGVSLVGL 72
N V ++G
Sbjct: 73 NEVCVLGH 80
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal
transduction, structural genom structural genomics
consortium, SGC, signaling protein; 1.85A {Homo
sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A
1iu0_A 1iu2_A
Length = 102
Score = 50.0 bits (120), Expect = 7e-10
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 10 EIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
EIV+ G LG I ++ P + I + P GAAA G+L + D ++ VN
Sbjct: 7 EIVLERGNSG--LGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNE 64
Query: 67 VSLVGL 72
V + +
Sbjct: 65 VDVSEV 70
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 50.1 bits (120), Expect = 7e-10
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 23 GVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
G V++ GS + ++ + +G AA+ G L I D+II VNG L
Sbjct: 28 GRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRA 77
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 50.5 bits (121), Expect = 7e-10
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
+ + N+ P GAA + G+L GD++I VNGV LVG
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGK 94
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 50.5 bits (121), Expect = 7e-10
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 22 LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
LG IV + + S + ++ + GAAA G+L GD+I++VNG L L
Sbjct: 30 LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 83
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 50.6 bits (121), Expect = 7e-10
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 6 PVTSEIVVVPKAK-GEILGVVIVESGWGSMLPT-------VVIANLAPAGAAARCGQLNI 57
P T V + K + LG I + + P + I+ L P G A G L +
Sbjct: 27 PETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAV 86
Query: 58 GDQIIAVNGVSLVGL 72
D+++ VNG+ + G
Sbjct: 87 NDEVLEVNGIEVSGK 101
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 50.0 bits (120), Expect = 8e-10
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 10 EIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
EI + G LG IV + + S + ++ + GAAA G+L GD+I++VNG
Sbjct: 10 EINLTRGPSG--LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG 67
Query: 67 VSLVGL 72
L L
Sbjct: 68 QDLKNL 73
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 50.1 bits (120), Expect = 9e-10
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 5 NPVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 63
+ V LG IV G VV+ + P G A R G+L GD I+
Sbjct: 10 TVCWGHVEEVELINDGSGLGFGIV----GGKTSGVVVRTIVPGGLADRDGRLQTGDHILK 65
Query: 64 VNGVSLVGL 72
+ G ++ G+
Sbjct: 66 IGGTNVQGM 74
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus}
Length = 85
Score = 49.6 bits (119), Expect = 9e-10
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
+ + ++G G +V G + I +L G AA G++ GD I++VN
Sbjct: 1 SIHTKLRKSSRG--FGFTVV--GGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDT 56
Query: 68 SLVGL 72
++G
Sbjct: 57 CVLGH 61
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 49.7 bits (119), Expect = 1e-09
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 10 EIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
EI ++ KG LG I + ++ + + GAA + G+L IGD+++AVN
Sbjct: 6 EIKLIKGPKG--LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 63
Query: 67 VSLVGL 72
VSL +
Sbjct: 64 VSLEEV 69
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 105
Score = 49.6 bits (119), Expect = 1e-09
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
+ ++ +A GAA R G L +GD+++++NGV +
Sbjct: 40 IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEA 74
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 49.7 bits (119), Expect = 1e-09
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 8 TSEIVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 63
+ +V + KG LG I + ++ + + GAA + G+L +GD+++
Sbjct: 22 SMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLM 81
Query: 64 VNGVSLVGL 72
VN SL +
Sbjct: 82 VNNYSLEEV 90
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 49.2 bits (118), Expect = 1e-09
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 6 PVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
+ E + +G LG IV G G + I+ + G A G+L GDQI++V
Sbjct: 7 DIPREPRRIVIHRGSTGLGFNIV--G-GEXGEGIFISFILAGGPADLSGELRKGDQILSV 63
Query: 65 NGVSLVGL 72
NGV L
Sbjct: 64 NGVDLRNA 71
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 49.3 bits (118), Expect = 2e-09
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 8 TSEIVVVPKAKGEI-LGVVIVESGWGSMLPT---VVIANLAPAGAAARCGQLNIGDQIIA 63
+ E+ +V K LG I+ + PT +VI +L G A R G L GD++++
Sbjct: 13 SPEVKIVELVKDCKGLGFSIL-DYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVS 71
Query: 64 VNGVSLVGLPLS 75
VN L L+
Sbjct: 72 VNEYCLDNTSLA 83
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural
genomics, alternative splicing, cell cycle, cell
division, cell junction, coiled coil; NMR {Mus
musculus} PDB: 2ogp_A
Length = 111
Score = 49.2 bits (118), Expect = 2e-09
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
+ + N+ P GAA + G+L GD++I VNGV L G
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGK 75
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 113
Score = 49.3 bits (118), Expect = 2e-09
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 6 PVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
E + KG LG IV G G + ++ + G A G+L GD+I++V
Sbjct: 11 GDAREPRKIILHKGSTGLGFNIV--G-GEDGEGIFVSFILAGGPADLSGELRRGDRILSV 67
Query: 65 NGVSLVGL 72
NGV+L
Sbjct: 68 NGVNLRNA 75
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 49.5 bits (118), Expect = 2e-09
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSL 69
++ + + G + G+ +P V+++ +AP A C +LN GDQ++ +NG +
Sbjct: 18 LIRMKPDENGRFGFNVK-GGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDI 75
Query: 70 VGL 72
Sbjct: 76 AEH 78
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 48.8 bits (117), Expect = 2e-09
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
+ I + GAA + G+L IGD+++AVN +L +
Sbjct: 35 IYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDV 69
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 48.8 bits (117), Expect = 2e-09
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 22 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
LG I+ G P + I+ + P G A R G L GDQ+++VNGVS+ G
Sbjct: 18 LGFNIM-GGKEQNSP-IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGE 66
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A
{Homo sapiens}
Length = 95
Score = 48.2 bits (115), Expect = 3e-09
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
V V K + LG+ I ++G G I + G + +GD I ++NG ++V
Sbjct: 8 EVNVYK-SEDSLGLTITDNGVGY----AFIKRIKDGGVIDSVKTICVGDHIESINGENIV 62
Query: 71 GL 72
G
Sbjct: 63 GW 64
>3e17_A Tight junction protein ZO-2; domain swapping, alternative
promoter usage, alternative splicing, cell junction,
cell membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 47.7 bits (114), Expect = 4e-09
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 21 ILGVVIVESGWGSML-----PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 75
++GV++++S + + + G A + G L+ GD I+ +NG + L+
Sbjct: 1 MIGVLLMKSRANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLT 60
Query: 76 TCQTYIK 82
+ I+
Sbjct: 61 DARKLIE 67
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 47.7 bits (114), Expect = 6e-09
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
+ + V V G G + G P + ++ + G AA ++ GD+++ +NG
Sbjct: 9 SFQYVPVQLQGGAPWGFTLK-GGLEHCEP-LTVSKIEDGGKAALSQKMRTGDELVNINGT 66
Query: 68 SLVG 71
L G
Sbjct: 67 PLYG 70
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 47.9 bits (114), Expect = 8e-09
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 4 LNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 63
L + V + G LG+ I G L + I + P A G L +GDQI+
Sbjct: 16 LQGGDEKKVNLVLGDGRSLGLTIR-GGAEYGLG-IYITGVDPGSEAEGSG-LKVGDQILE 72
Query: 64 VNGVSLVGL 72
VNG S + +
Sbjct: 73 VNGRSFLNI 81
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 47.0 bits (112), Expect = 1e-08
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
IV + K G LG I G S L + I+ + P A R G L GDQ++AVN V
Sbjct: 18 IVTLKKPPGAQLGFNIR-GGKASQLG-IFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQ 74
Query: 71 GL 72
+
Sbjct: 75 DI 76
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 47.5 bits (113), Expect = 1e-08
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
+ V + LG I SG + I+++ P +A G L IGDQI+ VNGV
Sbjct: 17 KKVFISLVGSRGLGCSIS-SGPIQKPG-IFISHVKPGSLSAEVG-LEIGDQIVEVNGVDF 73
Query: 70 VGL 72
L
Sbjct: 74 SNL 76
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 47.6 bits (113), Expect = 2e-08
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 12 VVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
V + + E LG+ + E G G + I++L G A G L +GD+I+ +NG S
Sbjct: 88 VRLDRLHPEGLGLSVRGGLEFGCG-----LFISHLIKGGQADSVG-LQVGDEIVRINGYS 141
Query: 69 LVGL 72
+
Sbjct: 142 ISSC 145
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling
protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 46.3 bits (110), Expect = 3e-08
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 5 NPVTSEIVVVPKAKGEILGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIG 58
+ + + + V K LG I G P + + + P G A+ L G
Sbjct: 6 HELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPG 63
Query: 59 DQIIAVNGVSLVGL 72
D+II NG S + +
Sbjct: 64 DKIIQANGYSFINI 77
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell
adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 46.0 bits (109), Expect = 5e-08
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
+ +V KG+ +G+ + G + +A + AA+ G L GDQI+ VN V
Sbjct: 29 SMKLVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 83
Query: 70 VGL 72
+
Sbjct: 84 TNI 86
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 45.0 bits (107), Expect = 6e-08
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
V V K+ LG + G L + ++ + +A R G L +GD+I VNG+SL
Sbjct: 14 VRVEKSPAGRLGFSVR-GGSEHGLG-IFVSKVEEGSSAERAG-LCVGDKITEVNGLSLES 70
Query: 72 LPLSTCQTYIKVNHHL 87
+ + + + L
Sbjct: 71 TTMGSAVKVLTSSSRL 86
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 44.3 bits (105), Expect = 9e-08
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 6 PVTSEIVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
PV V + K + E G + + G + V + N+ PAG G L D+++ V
Sbjct: 4 PVELHKVTLYKDSGMEDFGFSVAD---GLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQV 59
Query: 65 NGVSLVGLP 73
N V
Sbjct: 60 NHVRTRDFD 68
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 43.8 bits (104), Expect = 2e-07
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
+ I+ ++ G AAR G + +GD+++ VNGV+L G
Sbjct: 36 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGA 69
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 43.9 bits (104), Expect = 2e-07
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
+ I+ ++ G AAR G + +GD+++ VNGV+L G
Sbjct: 48 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGA 81
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 43.6 bits (103), Expect = 3e-07
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 12 VVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
V + K G+ + + + ++VI+++ P G A G L D+++ VNG
Sbjct: 18 VTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGT 75
Query: 68 SLVGL 72
+ +
Sbjct: 76 PMEDV 80
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 42.8 bits (101), Expect = 4e-07
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 9 SEIVVVPKAKGEILGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIGDQII 62
S + V K LG I G P + + + P G A+ L GD+II
Sbjct: 2 SMEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKII 59
Query: 63 AVNGVSLVGL 72
NG S + +
Sbjct: 60 QANGYSFINI 69
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens}
PDB: 2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 42.7 bits (101), Expect = 5e-07
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 10 EIVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
V + +A G G+ I + S ++VI+++ G A GQL D++ VN
Sbjct: 9 HTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMVN 66
Query: 66 GVSLVGLP 73
GVS+ +
Sbjct: 67 GVSMDNVE 74
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM,
tight junction, cell adhesio; 2.50A {Homo sapiens} PDB:
3tsw_A 3lh5_A
Length = 391
Score = 44.0 bits (103), Expect = 7e-07
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
+ +V KG+ +G+ + G + +A + AA+ G L GDQI+ VN V
Sbjct: 9 SMKLVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 63
Query: 70 VG 71
Sbjct: 64 TN 65
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 42.3 bits (100), Expect = 8e-07
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 10 EIVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
+V + +AK LG I E G G + ++ + P A + G L +GDQI+ VN
Sbjct: 10 RLVSLRRAKAHEGLGFSIRGGSEHGVG-----IYVSLVEPGSLAEKEG-LRVGDQILRVN 63
Query: 66 GVSLVGL 72
SL +
Sbjct: 64 DKSLARV 70
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 42.0 bits (99), Expect = 8e-07
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
P + +A++ A L + D+IIA+N + +
Sbjct: 28 PGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMA 73
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 41.5 bits (98), Expect = 1e-06
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+ I+ L P G AA+ G + +GD +++++G + L Q I+
Sbjct: 29 LSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIR 72
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 43.4 bits (101), Expect = 1e-06
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 13 VVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
+V KG+ +G+ + G + +A + AA+ G L GDQI+ VN V +
Sbjct: 4 LVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNI 58
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 117
Score = 42.1 bits (99), Expect = 1e-06
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 6 PVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
P E V KG LG+ IV + ++ + A + G L GDQ++
Sbjct: 15 PYVEEPRHVKVQKGSEPLGISIV----SGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEF 69
Query: 65 NGVSLVGL 72
NG++L
Sbjct: 70 NGINLRSA 77
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 41.1 bits (97), Expect = 2e-06
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH 86
+ I+ + P AA+ L+ GD ++A++GV+ + Q IK +
Sbjct: 27 LTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASY 74
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 40.7 bits (96), Expect = 2e-06
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 13/71 (18%)
Query: 3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
++P T + + K +G + I ++ +AAR G L I
Sbjct: 2 AMDPRT---ITMHKDSTGHVGFIFKNG---------KITSIVKDSSAARNG-LLTEHNIC 48
Query: 63 AVNGVSLVGLP 73
+NG +++GL
Sbjct: 49 EINGQNVIGLK 59
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 40.8 bits (96), Expect = 2e-06
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 22 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
G ++ E P + + P A + G + GD+++AV G S+ GL
Sbjct: 16 FGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLG 66
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 40.7 bits (96), Expect = 2e-06
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+ I++L G AA+ + IGD +++++G++ G+ Q IK
Sbjct: 29 LTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIK 72
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 41.6 bits (97), Expect = 3e-06
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 10 EIVVVPKAKGEILGVVIV----ESGWGSMLPT------VVIANLAPAGAAARCGQLNIGD 59
EI + + + ILG I + + + + ++ G A G L IGD
Sbjct: 28 EIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGD 86
Query: 60 QIIAVNGVSLVGL 72
+I+ VNG + +
Sbjct: 87 KIMQVNGWDMTMV 99
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium
channel 3 chimera; PDZ domain, PDZ binding, GIRK3
regulation, early endosomes; 1.68A {Rattus norvegicus}
PDB: 3qdo_A 3qgl_A
Length = 107
Score = 40.8 bits (96), Expect = 3e-06
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
P ++ + P GAA R G + GD+I+ VNGV++ G
Sbjct: 43 PLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGA 78
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 40.4 bits (95), Expect = 3e-06
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
S + V A G I G P +++ + G A L GD I+A+NG
Sbjct: 4 GSSGLTVDVAGPAPWGFRIS-GGRDFHTP-IIVTKVTERGKAEAAD-LRPGDIIVAINGQ 60
Query: 68 SLVGLPLSTCQTYIK 82
S + + Q+ I+
Sbjct: 61 SAENMLHAEAQSKIR 75
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 40.8 bits (96), Expect = 3e-06
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+ I++L G A++ + IGD +++++G+S G+ Q IK
Sbjct: 31 LTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIK 74
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 40.3 bits (95), Expect = 3e-06
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
P I ++ P AAR G L D++I VNG ++ GL
Sbjct: 28 PGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLR 64
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 40.4 bits (95), Expect = 3e-06
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+VI + P AA L GD I+A++G + + Q IK
Sbjct: 31 LVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIK 74
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 39.7 bits (93), Expect = 5e-06
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+ I+ + P AA L IGD I A++G + + Q IK
Sbjct: 29 LAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIK 72
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 3; structural genomics consortium, SGC, PDZ
domain, signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 40.2 bits (94), Expect = 6e-06
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 10 EIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
+V +P KG G I +S G + ++ + C L GD I + +
Sbjct: 12 LLVTIPLIKGPKGFGFAIADSPTGQKVKMIL--------DSQWCQGLQKGDIIKEIYHQN 63
Query: 69 LVGLP 73
+ L
Sbjct: 64 VQNLT 68
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 39.6 bits (93), Expect = 7e-06
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
I + P A + G L GD+++ VNG ++
Sbjct: 27 LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKET 63
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 39.6 bits (93), Expect = 7e-06
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
P I + G A G L D II VNGV+++ P
Sbjct: 27 PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEP 63
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 39.5 bits (93), Expect = 8e-06
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+ I+ + AA L GD I A+NG S + Q IK
Sbjct: 34 LTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIK 77
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 39.3 bits (92), Expect = 8e-06
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 4 LNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 63
+ VT+ ++ P + + LG + +I +L G A R G + +G +II
Sbjct: 9 MGNVTTVLIRRPDLRYQ-LGFSVQNG---------IICSLMRGGIAERGG-VRVGHRIIE 57
Query: 64 VNGVSLVGLP 73
+NG S+V P
Sbjct: 58 INGQSVVATP 67
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 39.2 bits (92), Expect = 8e-06
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+++ +A G A L GD I+A+NG S G+ + Q+ I+
Sbjct: 28 IMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIR 71
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 39.7 bits (93), Expect = 9e-06
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
V + ++ P G A R G + D +I VNG ++
Sbjct: 34 VYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDA 67
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70
kDa, Na/PI cotransporter C- terminal-associated
protein, NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 39.8 bits (93), Expect = 1e-05
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
+ K +G+ G + +I + A + G L GD+++ +NGV +
Sbjct: 17 CKLSKQEGQNYGFFLRI---EKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDK 72
Query: 72 LP 73
Sbjct: 73 EE 74
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 39.2 bits (92), Expect = 1e-05
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
P I ++ P A G L D+I+ VNGV + G
Sbjct: 33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGK 68
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 39.2 bits (92), Expect = 1e-05
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
+I ++ P A G L D ++AVNG S+ L
Sbjct: 31 QIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALD 65
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI,
signaling protein; 1.80A {Mus musculus}
Length = 106
Score = 39.0 bits (91), Expect = 1e-05
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
+ K +G+ G + +I + A + G L GD+++ +NGV +
Sbjct: 4 ESKLSKQEGQNYGFFLRI---EKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVD 59
Query: 71 GLP 73
Sbjct: 60 KEE 62
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 39.2 bits (91), Expect = 1e-05
Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 4 LNPVTSEIVVVPKAKGEILGV-VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
+ P ++ + + K+ + S + + + ++ G A++ G L GD+I+
Sbjct: 11 ICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEIL 69
Query: 63 AVNGVSLVGLPLS 75
+N + L S
Sbjct: 70 EINNRAADALNSS 82
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation,
cell projection, disease mutation, membrane,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 216
Score = 40.1 bits (93), Expect = 2e-05
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 24 VVIV--ESGWGSML------PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
+ SG+G L P I ++ P A G L D+I+ VNGV + G
Sbjct: 13 CTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 39.0 bits (90), Expect = 2e-05
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 6 PVTSEIVVVPKAKGEILGV-VIVESGWGSMLPTVVIANLAPAG-AAARCGQLNIGDQIIA 63
P + ++ +P G V VES + TV + + + ++ GD+I+
Sbjct: 13 PYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILE 72
Query: 64 VNGVSLVGLPLSTCQTYIK 82
+NG + L + + IK
Sbjct: 73 INGTPVRTLRVEEVEDAIK 91
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 38.5 bits (90), Expect = 2e-05
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 11 IVVVPKAKGEILGVVIVESG-----WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
++ + K + G I G + +A + + A G L GD I +VN
Sbjct: 7 VLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVN 65
Query: 66 GVSLVGLP 73
G+++ G+
Sbjct: 66 GLNVEGIR 73
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding,
protein-binding, RHOB, nitration, cytoplasm, PDZ
domain, CAsp8; 1.82A {Homo sapiens}
Length = 109
Score = 38.6 bits (90), Expect = 2e-05
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
V + L P +A+ G GD I+++ V L
Sbjct: 46 VQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWL 79
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 38.8 bits (90), Expect = 2e-05
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 35 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
+ T+ + + G A G L GD+II VNG S++G
Sbjct: 60 MDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKT 97
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 37.6 bits (88), Expect = 3e-05
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
V++ + A G L GDQI+AVN +++
Sbjct: 25 CVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKAS 59
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 38.0 bits (88), Expect = 3e-05
Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 27 VESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+ S + + + ++ G A++ G L GD+I+ +N + L S + ++
Sbjct: 26 LSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLS 80
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding
protein; PDZ domain, cytoplasm, membrane, polymorphism,
protein binding; 2.70A {Homo sapiens}
Length = 104
Score = 37.8 bits (88), Expect = 4e-05
Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 11 IVVVPKAKGEILGVVIV-----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
+V V K E G I S +I + A G L GD + +N
Sbjct: 18 LVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANIN 76
Query: 66 GVSLVGLP 73
GVS G
Sbjct: 77 GVSTEGFT 84
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 37.3 bits (87), Expect = 5e-05
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
V + + G A R G L D ++ +N +
Sbjct: 26 VRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWK 60
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 37.7 bits (88), Expect = 5e-05
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
+I ++ P A G L D ++AVNG S+ L
Sbjct: 32 QIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALD 66
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 37.4 bits (87), Expect = 5e-05
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
V + + G A R G L D ++ +N +
Sbjct: 38 VRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWK 72
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 96
Score = 37.0 bits (86), Expect = 7e-05
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+ + + G+A G+L GDQI+ +N L ++
Sbjct: 33 LTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLSWERAVDILR 75
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 37.0 bits (86), Expect = 7e-05
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 6 PVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
+E++ + KG G I +S G + ++ C L GD I+ +
Sbjct: 6 SGQAELMTLTIVKGAQGFGFTIADSPTGQRVKQIL--------DIQGCPGLCEGDLIVEI 57
Query: 65 NGVSLVGLP 73
N ++ L
Sbjct: 58 NQQNVQNLS 66
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 37.0 bits (86), Expect = 8e-05
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 11 IVVVPKAKG---EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
IV+ K + + + V+ ++ A G L GD I +NG
Sbjct: 6 IVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGE 64
Query: 68 SLVGLP 73
S++GL
Sbjct: 65 SVLGLV 70
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 36.7 bits (85), Expect = 1e-04
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
V + L P +A+ G GD I+++ GV L
Sbjct: 38 VQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLT 72
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 36.9 bits (85), Expect = 1e-04
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
+ ++ G A R G L +GD +I VNG ++V +
Sbjct: 65 ALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVG 101
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 35.7 bits (83), Expect = 2e-04
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 49 AARCGQLNIGDQIIAVNGVSLVGLP 73
+ R L GD I+ VN ++ L
Sbjct: 37 SPRSRGLKEGDLIVEVNKKNVQALT 61
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 35.7 bits (83), Expect = 2e-04
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
V++ ++ P GAA + G + GD+II VNG +
Sbjct: 31 VLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSS 65
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ
domain, protein, acetylation, cell projection, disease
mutation, membrane; NMR {Homo sapiens}
Length = 128
Score = 36.4 bits (84), Expect = 2e-04
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
P I ++ P A G L D+I+ VNGV + G
Sbjct: 33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 36.0 bits (83), Expect = 2e-04
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
+ ++ G A R G L +GD +I VNG ++V +
Sbjct: 45 ALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKV 80
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown
function; 1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 35.3 bits (80), Expect = 0.001
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
+ + + P G A+ L GD+II NG S + + + +K
Sbjct: 26 IFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLK 68
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.007
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 20/89 (22%)
Query: 17 AKGEILGVVIVESG-WGSMLPTV--VIANLAPAGAAARC----GQLNIGDQIIA---VNG 66
++G + V I E+ W S +V I L G RC ++ I+ N
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV--RCYEAYPNTSLPPSILEDSLENN 331
Query: 67 -------VSLVGLPLSTCQTYI-KVNHHL 87
+S+ L Q Y+ K N HL
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Score = 30.4 bits (68), Expect = 0.047
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
Query: 27 VESGWGSMLPTVVIANLAPAGAAARCGQLN----IGDQI-IA-VNG-----VSLVGLPLS 75
+E+ G P + I+NL + N G Q+ I+ VNG VS G P S
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS--GPPQS 385
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 31.1 bits (69), Expect = 0.028
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 31 WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
+ + + + N+ +A G L+ GD+IIA++ +
Sbjct: 491 YKASPQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQA 528
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 29.9 bits (68), Expect = 0.076
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
+ I + AA+ G L D II VN
Sbjct: 365 IKIDEVVKGSPAAQAG-LQKDDVIIGVNRD 393
Score = 26.1 bits (58), Expect = 1.6
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNG 66
++ + P +A+ G + GD I ++NG
Sbjct: 265 AFVSEVLPGSGSAKAG-VKAGDIITSLNG 292
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 29.6 bits (67), Expect = 0.081
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNG 66
VV+ N+ AA+ G L GD II N
Sbjct: 385 VVVNNVKTGTPAAQIG-LKKGDVIIGANQ 412
Score = 25.7 bits (57), Expect = 2.2
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNG 66
++ + P +AA+ G + GD I ++NG
Sbjct: 288 AFVSQVLPNSSAAKAG-IKAGDVITSLNG 315
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 29.6 bits (67), Expect = 0.11
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
V + + A R G + GD II+ N
Sbjct: 388 VQVVGASENSAGWRAG-IRPGDIIISANKKP 417
Score = 26.1 bits (58), Expect = 1.6
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNG 66
+++ + P A G L GD I +N
Sbjct: 284 ALVSQVNPNSPAELAG-LKAGDIITQIND 311
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 29.2 bits (66), Expect = 0.11
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 18 KGEILGV---VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL 74
G + GV + + G G + VV+ P G A + G GD I+ V+G ++ G+ L
Sbjct: 81 AGSVTGVGLEITYDGGSGKDV--VVLTPA-PGGPAEKAG-ARAGDVIVTVDGTAVKGMSL 136
Query: 75 S 75
Sbjct: 137 Y 137
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 29.0 bits (64), Expect = 0.15
Identities = 6/54 (11%), Positives = 14/54 (25%), Gaps = 3/54 (5%)
Query: 22 LGVVIVESGWGSMLPTVV---IANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
+ G ++ +N G G I ++G ++
Sbjct: 739 IACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAG 792
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 28.0 bits (63), Expect = 0.17
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNG 66
V + ++ P AA G+L GD+I A++G
Sbjct: 7 VYVMSVLPNMPAA--GRLEAGDRIAAIDG 33
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes}
PDB: 2kjk_A 3i1e_A
Length = 100
Score = 27.3 bits (61), Expect = 0.32
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNG 66
V + ++ AA L+ GD I ++G
Sbjct: 9 VYVMSVKDDVPAA--DVLHAGDLITEIDG 35
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 27.1 bits (60), Expect = 0.74
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 58 GDQIIAVNGVSLVGLPLS 75
G I+ +NG + S
Sbjct: 111 GHWIMMMNGDYITKKVES 128
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 26.4 bits (58), Expect = 0.88
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
V I ++ P A+ L G I ++NG+
Sbjct: 27 VQIDSVVPGSPAS--KVLTPGLVIESINGMP 55
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation,
SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A
{Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A*
1deo_A* 1pp4_A* 3c1u_A*
Length = 233
Score = 26.9 bits (59), Expect = 0.89
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 28 ESGWGSMLP---TVVIANLAPAGAAAR 51
+GWG L + + N A AG +AR
Sbjct: 20 TNGWGEYLASYLSATVVNDAVAGRSAR 46
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 26.6 bits (58), Expect = 0.98
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 4/64 (6%)
Query: 8 TSEIVVVPKAKGEILGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIA 63
E V P G++ V + S + + AA G D II
Sbjct: 80 LRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIG 139
Query: 64 VNGV 67
+ V
Sbjct: 140 ADTV 143
Score = 25.4 bits (55), Expect = 2.8
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 40 IANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
+ + R G D I+++NG L
Sbjct: 20 VLRVQENSPGHRAGLEPFFDFIVSINGSRL 49
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 26.1 bits (58), Expect = 1.0
Identities = 7/29 (24%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNG 66
+ +++ A G++ +GD+II+ +G
Sbjct: 3 IYASSVVENMPAK--GKIEVGDKIISADG 29
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 26.4 bits (59), Expect = 1.1
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNG 66
++ + P +A+ G + GD I ++NG
Sbjct: 265 AFVSEVLPGSGSAKAG-VKAGDIITSLNG 292
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane,
cell membrane, membrane, metal-binding,
metalloprotease, transmembrane; 1.67A {Escherichia coli
k-12} PDB: 2zpl_A
Length = 95
Score = 26.1 bits (57), Expect = 1.1
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 39 VIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
V+ +A AA + G ++ AV+G+
Sbjct: 5 VVGEIAANSIAAEAQ-IAPGTELKAVDGIE 33
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane
protein, PDZ domain, hydrolase, inner membrane,
membrane, metal-binding; HET: MLY MSE; 0.98A
{Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 25.9 bits (57), Expect = 1.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 39 VIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
V+ N+ P AA+ G L GD+I+ V+G L
Sbjct: 7 VLENVQPNSAASXAG-LQAGDRIVXVDGQPL 36
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 25.3 bits (55), Expect = 2.2
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ G L GD +A+NG+ L
Sbjct: 39 YRVSPGKDPVLFESIG-LQDGDMAVALNGLDL 69
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 25.2 bits (56), Expect = 2.9
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIA 41
+V+ + ++GV V G ++ T +A
Sbjct: 395 LVIEEGSHRLIGVQAVAPEAGELIQTAALA 424
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A
{Mus musculus} SCOP: b.69.12.1
Length = 495
Score = 25.4 bits (54), Expect = 3.2
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNI---GDQIIAVNGV 67
++ + G +L VV V L V++ + + + Q+ +
Sbjct: 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTA 482
Query: 68 SLVGLPLSTCQTY 80
+ LPL C Y
Sbjct: 483 GVAQLPLHRCDIY 495
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 24.9 bits (55), Expect = 3.4
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 18/72 (25%)
Query: 13 VVP--KAKGEI----LGVVIVESGWGSMLPT--VVIANLAPAGAAARCG----------Q 54
+V G++ LG+ L V++ + P+G A + G +
Sbjct: 220 IVDQLVRFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGR 279
Query: 55 LNIGDQIIAVNG 66
L +GD I +VNG
Sbjct: 280 LVLGDIITSVNG 291
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES;
2.10A {Escherichia coli} SCOP: d.110.2.1
Length = 195
Score = 24.9 bits (54), Expect = 3.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 7 VTSEIVVVPKAKGEILGVVIVES 29
SEIV+ K +I+GV+ ++S
Sbjct: 124 SNSEIVLPLVVKNQIIGVLDIDS 146
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME
MRD; 1.25A {Neisseria meningitidis}
Length = 167
Score = 24.8 bits (54), Expect = 4.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 9 SEIVVVPKAKGEILGVVIVES 29
SEIVV + G +GV+ +S
Sbjct: 115 SEIVVPLFSDGRCIGVLDADS 135
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
3pyz_A* 3qcz_A*
Length = 437
Score = 24.4 bits (54), Expect = 5.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 32 GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
G +P V +AN A A A +L + D+ I G+ LP
Sbjct: 262 GLPVPNVPLANAATALAVLHYSELPLSDEAIR-QGLQAASLP 302
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 23.6 bits (51), Expect = 7.0
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 40 IANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
++ G L GD +A+NG+ L
Sbjct: 23 VSPGKDPVLFESIG-LQDGDMAVALNGLDL 51
>2omd_A Molybdopterin-converting factor subunit 2; MOAE, coenzyme
biosynthesis, structural genomics, NPPSFA; 2.00A
{Aquifex aeolicus}
Length = 154
Score = 23.8 bits (52), Expect = 8.0
Identities = 5/18 (27%), Positives = 7/18 (38%), Gaps = 1/18 (5%)
Query: 51 RCGQLNIGDQIIAVNGVS 68
R G + IG+ V
Sbjct: 88 RLGLVKIGEPSFLV-LAV 104
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO,
oxidoreductase; 1.50A {Staphylococcus aureus} PDB:
3ksf_A 3ksi_A 3ksg_A*
Length = 160
Score = 23.7 bits (51), Expect = 8.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 6 PVTSEIVVVPKAKGEILGVVIVES 29
SEIVV +I+GV+ +++
Sbjct: 111 NSKSEIVVPIFKDDKIIGVLDIDA 134
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase,
MOAD, MOAE, transferase, molybdenum cofactor
biosynthesis; 2.00A {Staphylococcus aureus} PDB:
2qie_A*
Length = 149
Score = 23.8 bits (52), Expect = 9.1
Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 51 RCGQLNIGDQIIAVNGVS 68
R G L I D + + VS
Sbjct: 82 RIGPLQISDIAVLI-AVS 98
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A
{Mycobacterium tuberculosis}
Length = 147
Score = 23.8 bits (52), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 51 RCGQLNIGDQIIAVNGVS 68
R G+L IGD + + G S
Sbjct: 90 RTGELQIGDAAVVI-GAS 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,417,222
Number of extensions: 76660
Number of successful extensions: 391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 213
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)