BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3491
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAI 100
+ C+ C +++ KG+L HK G E +C C + +NLKTH I
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTG-EKPYRCNICGAQFNRPANLKTHTRI 67
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 80 QCPFCPYKSKHKSNLKTHMAIRH 102
QC +C Y+S SNLKTH+ +H
Sbjct: 4 QCQYCEYRSADSSNLKTHIKTKH 26
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 80 QCPFCPYKSKHKSNLKTHMAIRH 102
QC +C ++S SNLKTH+ +H
Sbjct: 4 QCQYCEFRSADSSNLKTHIKTKH 26
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQN 104
F C C KTY+ L RH++ G CP C + +S + H+ + HQN
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRP-RSCPECGKCFRDQSEVNRHLKV-HQN 57
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 80 QCPFCPYKSKHKSNLKTHMAIRH 102
QC +C +S SNLKTH+ +H
Sbjct: 4 QCQYCELRSADSSNLKTHIKTKH 26
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 80 QCPFCPYKSKHKSNLKTHMAIRH 102
QC +C +S SNLKTH+ +H
Sbjct: 4 QCQYCEXRSADSSNLKTHIKTKH 26
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 50 FMCESCHKTYKAKGSLERHKKFECGKEAG 78
F C C K+++AKG+L H++ G+++G
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSG 41
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 53 ESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHM 98
ESC + + GSL RH + G++ QC C +L TH+
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHM 98
+ C C K++ K L RH++ G E +CP C ++NL+ H
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTG-EKPYKCPECGKSFSQRANLRAHQ 97
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 79 LQCPFCPYKSKHKSNLKTHM 98
+C C Y ++ KSNLK HM
Sbjct: 10 FKCSLCEYATRSKSNLKAHM 29
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 52 CESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQ 103
C C K +++ L H + G E +C FC Y + K++L+ H+ H+
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTG-EKPYKCEFCEYAAAQKTSLRYHLERHHK 57
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 47 SALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHM 98
S+ CE C K ++ L RHK G E CP C + K K + H+
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSG-EKPYSCPVCGLRFKRKDRMSYHV 55
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 49 LFMCESCHKTYKAKGSLERHKKFECG 74
++ C+ C K+++ KGSL H++ G
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIHTG 35
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 53 ESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHM 98
ESC + + L RH + G++ QC C +L TH+
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 80 QCPFCPYKSKHKSNLKTHMAIRH 102
QC +C + SNLKTH+ +H
Sbjct: 4 QCQYCEKRFADSSNLKTHIKTKH 26
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 62 KGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQN 104
K +L H++ C + +C +C + +K SNL HM H +
Sbjct: 22 KAALRIHERIHC-TDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 51 MCESCHKTYKAKGSLERHKKFECGKEAGLQCPF--CPYKSKHKSNLKTHMAI 100
+C C K + L+RH+ G E QC F C + NL+TH+ I
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTG-EKPFQCTFEGCGKRFSLDFNLRTHVRI 86
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 53 ESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHM 98
ESC + + L RH + G++ QC C +L TH+
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 53 ESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHM 98
ESC + + +L RH + G++ QC C +L TH+
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,665,244
Number of Sequences: 62578
Number of extensions: 73371
Number of successful extensions: 333
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 73
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)