RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3491
(108 letters)
>gnl|CDD|227360 COG5027, SAS2, Histone acetyltransferase (MYST family) [Chromatin
structure and dynamics].
Length = 395
Score = 29.4 bits (66), Expect = 0.32
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 39 FSSFKPLQS---ALFMCESCHKTYKAKGSLERHKKFEC 73
FS + S +++CE C K Y ++ SL RH+K +C
Sbjct: 145 FSPYPEEFSDLDIVYICEFCLKYYGSQTSLVRHRK-KC 181
>gnl|CDD|222450 pfam13909, zf-H2C2_5, C2H2-type zinc-finger domain.
Length = 24
Score = 26.4 bits (59), Expect = 0.47
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 79 LQCPFCPYKSKHKSNLKTHMAIRH 102
+C CPY S L+ H+ + H
Sbjct: 1 YKCSHCPYSST-PKKLERHLKLHH 23
>gnl|CDD|215056 PLN00104, PLN00104, MYST -like histone acetyltransferase;
Provisional.
Length = 450
Score = 28.6 bits (64), Expect = 0.55
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 39 FSSFKP---LQSALFMCESCHKTYKAKGSLERHKK 70
FS F P S L+ CE C K K K L+RH K
Sbjct: 185 FSPFPPEYNDCSKLYFCEFCLKFMKRKEQLQRHMK 219
>gnl|CDD|173929 cd08170, GlyDH, Glycerol dehydrogenases (GlyDH) catalyzes oxidation
of glycerol to dihydroxyacetone in glycerol
dissmilation. Glycerol dehydrogenases (GlyDH) is a key
enzyme in the glycerol dissimilation pathway . In
anaerobic conditions, many microorganisms utilize
glycerol as a source of carbon through coupled oxidative
and reductive pathways. One of the pathways involves the
oxidation of glycerol to dihydroxyacetone with the
reduction of NAD+ to NADH catalyzed by glycerol
dehydrogenases. Dihydroxyacetone is then phosphorylated
by dihydroxyacetone kinase and enters the glycolytic
pathway for further degradation. The activity of GlyDH
is zinc-dependent. The zinc ion plays a role in
stabilizing an alkoxide intermediate at the active site.
Length = 351
Score = 28.6 bits (65), Expect = 0.61
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 34 SSGASFSSFKPLQSALFMCESCHKT-----YKAKGSLERH 68
S G + KP +AL + + C++T A ++ER
Sbjct: 178 SGGPNMFGGKPTLAALALAKLCYETLLEDGVAALAAVERG 217
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 28.6 bits (64), Expect = 0.62
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 69 KKFECGKEAGLQCPFCPYKSKHKSNL 94
K+ + K A L CPF P K K K L
Sbjct: 236 KEVKDAKIAILTCPFEPPKPKTKHKL 261
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 25.9 bits (57), Expect = 0.99
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 79 LQCPFCPYKSKHKSNLKTHMAI 100
+CP C K KS L+ HM
Sbjct: 1 YRCPECGKVFKSKSALREHMRT 22
>gnl|CDD|226424 COG3909, COG3909, Cytochrome c556 [Energy production and
conversion].
Length = 147
Score = 27.5 bits (61), Expect = 1.2
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 52 CESCHKTYKAK 62
C SCH+TY+AK
Sbjct: 136 CGSCHQTYRAK 146
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys.
The C2H2 zinc finger is composed of two short beta
strands followed by an alpha helix. The amino terminal
part of the helix binds the major groove in DNA binding
zinc fingers. The accepted consensus binding sequence
for Sp1 is usually defined by the asymmetric
hexanucleotide core GGGCGG but this sequence does not
include, among others, the GAG (=CTC) repeat that
constitutes a high-affinity site for Sp1 binding to the
wt1 promoter.
Length = 22
Score = 25.4 bits (56), Expect = 1.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 80 QCPFCPYKSKHKSNLKTHM 98
+CP C KSNLK H+
Sbjct: 1 KCPDCGKSFSRKSNLKRHL 19
Score = 23.8 bits (52), Expect = 5.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 51 MCESCHKTYKAKGSLERHKK 70
C C K++ K +L+RH +
Sbjct: 1 KCPDCGKSFSRKSNLKRHLR 20
>gnl|CDD|182574 PRK10592, PRK10592, putrescine transporter subunit: membrane
component of ABC superfamily; Provisional.
Length = 281
Score = 27.5 bits (61), Expect = 1.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 5 SIYRTVNIVDPVCPAFVDAPWLYFLLYSFSS 35
S +R V +V + F+ AP L ++YSF+S
Sbjct: 9 SPWRIVILV--LGFTFLYAPMLMLVIYSFNS 37
>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase. Members of this family are
ATP-dependent urea carboxylase, including characterized
members from Oleomonas sagaranensis (alpha class
Proteobacterium) and yeasts such as Saccharomyces
cerevisiae. The allophanate hydrolase domain of the yeast
enzyme is not included in this model and is represented
by an adjacent gene in Oleomonas sagaranensis. The fusion
of urea carboxylase and allophanate hydrolase is
designated urea amidolyase. The enzyme from Oleomonas
sagaranensis was shown to be highly active on acetamide
and formamide as well as urea [Central intermediary
metabolism, Nitrogen metabolism].
Length = 1201
Score = 27.3 bits (61), Expect = 1.6
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 1 MQSPSIY----RTVNIVDPVC--PAFVDAPWL 26
M+ P Y RT+ I + AF D PWL
Sbjct: 1003 MEGPGGYQLVGRTIQIWNRYRLGGAFQDGPWL 1034
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This
family contains two copies of a C2H2-like zinc finger
domain.
Length = 100
Score = 26.5 bits (59), Expect = 1.9
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 80 QCPFCPYKSKHKSNLKTHMAIRH 102
C FC + S HM H
Sbjct: 1 DCLFCNHTSDTVEENLEHMFKSH 23
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 24.9 bits (54), Expect = 2.4
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 80 QCPFCPYKSKHKSNLKTHMAIRH 102
+CP C K LK H+ H
Sbjct: 2 KCPLCGKSFSSKDALKRHLRKHH 24
>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional.
Length = 857
Score = 26.4 bits (58), Expect = 3.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 47 SALFMCESCHKTYK 60
L+MCE+CH T K
Sbjct: 814 KNLYMCENCHNTVK 827
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 26.1 bits (58), Expect = 3.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 69 KKFECGKEAGLQCPFCPYKSKHKSNL 94
K+ + K A L CPF P K K K L
Sbjct: 232 KEVKDAKIAILTCPFEPPKPKTKHKL 257
>gnl|CDD|215642 PLN03238, PLN03238, probable histone acetyltransferase MYST;
Provisional.
Length = 290
Score = 26.0 bits (57), Expect = 4.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 49 LFMCESCHKTYKAKGSLERHK 69
L++CE C K + K SL RH
Sbjct: 48 LYICEYCLKYMRKKKSLLRHL 68
>gnl|CDD|218364 pfam04987, PigN, Phosphatidylinositolglycan class N (PIG-N).
Phosphatidylinositolglycan class N (PIG-N) is a
mammalian homologue of the yeast protein MCD4P and is
expressed in the endoplasmic reticulum. PIG-N is
essential for glycosylphosphatidylinositol anchor
synthesis. Glycosylphosphatidylinositol (GPI)-anchored
proteins are cell surface-localised proteins that serve
many important cellular functions.
Length = 441
Score = 26.1 bits (58), Expect = 4.5
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 6/25 (24%)
Query: 26 LYFLLYS----FSSG--ASFSSFKP 44
L+FL F +G AS SSF
Sbjct: 345 LFFLFLLQVAFFGTGNIASISSFSL 369
>gnl|CDD|218184 pfam04632, FUSC, Fusaric acid resistance protein family. This
family includes a conserved region found in two
proteins associated with fusaric acid resistance,from
Burkholderia cepacia and Klebsiella oxytoca. These
proteins are likely to be membrane transporter
proteins.
Length = 649
Score = 26.1 bits (58), Expect = 4.9
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 18 PAFVDAPWLYFLL 30
FV AP L+ L
Sbjct: 68 ALFVQAPLLFLLA 80
>gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup
contains atypical SDRs, one member is identified as
Escherichia coli protein ybjT, function unknown.
Atypical SDRs are distinct from classical SDRs. Members
of this subgroup have a glycine-rich NAD(P)-binding
motif consensus that generally matches the extended
SDRs, TGXXGXXG, but lacks the characteristic active
site residues of the SDRs. This subgroup has basic
residues (HXXXR) in place of the active site motif
YXXXK, these may have a catalytic role. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif
is often different from the forms normally seen in
classical or extended SDRs. Atypical SDRs include
biliverdin IX beta reductase (BVR-B,aka flavin
reductase), NMRa (a negative transcriptional regulator
of various fungi), progesterone 5-beta-reductase like
proteins, phenylcoumaran benzylic ether and
pinoresinol-lariciresinol reductases, phenylpropene
synthases, eugenol synthase, triphenylmethane
reductase, isoflavone reductases, and others. SDRs are
a functionally diverse family of oxidoreductases that
have a single domain with a structurally conserved
Rossmann fold, an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Sequence
identity between different SDR enzymes is typically in
the 15-30% range; they catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase numbering). In addition to the Tyr and
Lys, there is often an upstream Ser and/or an Asn,
contributing to the active site; while substrate
binding is in the C-terminal region, which determines
specificity. The standard reaction mechanism is a
4-pro-S hydride transfer and proton relay involving the
conserved Tyr and Lys, a water molecule stabilized by
Asn, and nicotinamide. In addition to the Rossmann fold
core region typical of all SDRs, extended SDRs have a
less conserved C-terminal extension of approximately
100 amino acids, and typically have a TGXXGXXG cofactor
binding motif. Complex (multidomain) SDRs such as
ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 293
Score = 25.8 bits (57), Expect = 5.7
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 8 RTVNIVDP--VCPAFVDAPWLYFLLYSFSSGASFSS 41
++ DP + A Y+L++S SG F
Sbjct: 47 VRGDLEDPESLRAALEGIDTAYYLVHSMGSGGDFEE 82
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 25.0 bits (55), Expect = 9.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 25 WLYFLLYSFSSGASFSSF 42
W Y L+Y S G F+ F
Sbjct: 209 WGYALIYGASFGGFFAFF 226
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.134 0.438
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,042,803
Number of extensions: 380009
Number of successful extensions: 566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 46
Length of query: 108
Length of database: 10,937,602
Length adjustment: 73
Effective length of query: 35
Effective length of database: 7,699,760
Effective search space: 269491600
Effective search space used: 269491600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)