RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3491
(108 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 38.5 bits (90), Expect = 2e-05
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 50 FMCESCHKTYKAKGSLERHKKF--ECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
CE C T + K SL H++ E C FC + + ++ H + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 35.6 bits (83), Expect = 2e-04
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAI 100
C C + +K +L H++ C + +C +C + +K SNL HM
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCT-DRPFKCNYCSFDTKQPSNLSKHMKK 59
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 34.7 bits (79), Expect = 4e-04
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAI 100
++CE C K L++H + C +C + K K NL HM
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTD-VRPYHCTYCNFSFKTKGNLTKHMKS 51
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 34.4 bits (80), Expect = 8e-04
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 50 FMCESCHKTYKAKGSLERHKKFECGKEAG-LQCPFCPYKSKHKSNLKTHMAIRH 102
+ C CH + G+++ H + + CP C KS+L H+ +H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 31.8 bits (73), Expect = 0.007
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 50 FMCESCHKTYKAKGSLERHKKFECGK-EAGLQCPFCPYKSKHKSNLKTHMAIRHQ 103
+ C+ C + Y + RH + CPFC + K N+ H+ I H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 29.4 bits (65), Expect = 0.030
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 80 QCPFCPYKSKHKSNLKTHMAIRHQN 104
QC +C ++S SNLKTH+ +H
Sbjct: 4 QCQYCEFRSADSSNLKTHIKTKHSK 28
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 31.1 bits (69), Expect = 0.033
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
F+C C + + SL++H ++ E CP C + + H+ +H
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKH 124
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.5 bits (65), Expect = 0.098
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 50 FMCESCHK-TYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQN 104
C +C K L++H + C +E C C + + + +K H+ H +
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHME-NCKQEM-FTCHHCGKQLRSLAGMKYHVMANHNS 88
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 29.2 bits (66), Expect = 0.18
Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 15/55 (27%)
Query: 52 CESCHKTYKAKGSLERH-------KKFECGKEAGLQCPFCPYKS-KHKSNLKTHM 98
C K++KAK L H K F C C K NLK H
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFP---GC----GKIFARSENLKIHK 112
Score = 28.0 bits (63), Expect = 0.41
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 21/83 (25%)
Query: 36 GASFSSFKPLQSAL-----------FMCESCHKTYKAKGSLERH-------KKFECGKEA 77
G+S SS +P++ L +SC +T+ L H +
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 78 GLQ-CPFCPYKS-KHKSNLKTHM 98
+ CP KS K K L H+
Sbjct: 61 YWEECPRE-GKSFKAKYKLVNHI 82
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 27.8 bits (61), Expect = 0.35
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 67 RHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQN 104
H + E G +C +C +++ + H+ H N
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPN 44
Score = 24.0 bits (51), Expect = 9.9
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 75 KEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
+ C C + +K L H H
Sbjct: 47 LNSSYVCVECNFLTKRYDALSEHNLKYH 74
>1cpq_A Cytochrome C'; electron transport; HET: HEM; 1.72A {Rhodobacter
capsulatus} SCOP: a.24.3.2 PDB: 1eky_A 1nbb_A* 1rcp_A*
1cpr_A*
Length = 129
Score = 28.2 bits (62), Expect = 0.37
Identities = 5/23 (21%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 40 SSFKPLQSALFMCESCHKTYKAK 62
++ + L C++CH Y+ +
Sbjct: 109 AALQKLGGT---CKACHDDYREE 128
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 28.2 bits (62), Expect = 0.39
Identities = 7/71 (9%), Positives = 13/71 (18%)
Query: 7 YRTVNIVDPVCPAFVDAPWLYFLLYSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLE 66
+R + P V Y S + E + L
Sbjct: 166 FRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLR 225
Query: 67 RHKKFECGKEA 77
++
Sbjct: 226 GPIHLSVLRQG 236
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.3 bits (57), Expect = 0.45
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 80 QCPFCPYKSKHKSNLKTHMA 99
+CP C Y S K+NL H+
Sbjct: 11 KCPQCSYASAIKANLNVHLR 30
>1bbh_A Cytochrome C'; electron transport(heme protein); HET: HEM; 1.80A
{Allochromatium vinosum} SCOP: a.24.3.2
Length = 131
Score = 27.7 bits (61), Expect = 0.47
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Query: 40 SSFKPLQSALFMCESCHKTYKAK 62
++F + +A C+SCH+ Y+AK
Sbjct: 112 TAFGDVGAA---CKSCHEKYRAK 131
>1gqa_A Cytochrome C'; electron transport, heme; HET: HEC; 1.8A
{Rhodobacter sphaeroides} SCOP: a.24.3.2
Length = 130
Score = 27.8 bits (61), Expect = 0.49
Identities = 5/23 (21%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 40 SSFKPLQSALFMCESCHKTYKAK 62
++ + C+SCH ++ K
Sbjct: 110 AAVGKVGGT---CKSCHDDFRVK 129
>1mqv_A Cytochrome C'; four-helix bundle, electron transport; HET: HEM;
1.78A {Rhodopseudomonas palustris} SCOP: a.24.3.2 PDB:
1a7v_A*
Length = 125
Score = 27.7 bits (61), Expect = 0.52
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 40 SSFKPLQSALFMCESCHKTYKAK 62
++ + C+SCH ++AK
Sbjct: 104 ANIGGVLGN---CKSCHDDFRAK 123
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 27.6 bits (62), Expect = 0.55
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 13/59 (22%)
Query: 50 FMCESCHKTYKAKGSLERH----------KKFECGKEAGLQCPFCPYKSKHKSNLKTHM 98
+ C + + ++ L H K+F C G C K + L HM
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVC-HWGG--CSRELRPFKAQYMLVVHM 59
Score = 26.8 bits (60), Expect = 0.99
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 19/57 (33%)
Query: 52 CESCHKTYKAKGSLERH-------KKFECGKEAGLQCPFCPYKSK---HKSNLKTHM 98
C + +KA+ L H K +C E C K NLKTH+
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFE---GC------RKSYSRLENLKTHL 89
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle;
HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB:
3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A*
2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A*
2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Length = 127
Score = 27.3 bits (60), Expect = 0.68
Identities = 6/23 (26%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 40 SSFKPLQSALFMCESCHKTYKAK 62
++F + ++ C++CH Y+ K
Sbjct: 107 AAFGDVGAS---CKACHDAYRKK 126
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET:
PLP; 1.90A {Homo sapiens}
Length = 471
Score = 27.7 bits (62), Expect = 0.70
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 13/77 (16%)
Query: 25 WLYFLL---YSFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFE--------- 72
W+ F Y+ ++ ++F+ F+ M + + + + + E
Sbjct: 390 WMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPAWQLMQQFQNPDFPPEVEEQDASTLPV 449
Query: 73 -CGKEAGLQCPFCPYKS 88
C E+G++ S
Sbjct: 450 SCAWESGMKRHRAACAS 466
>2j8w_A Cytochrome C'; heme, iron, transport, metal-binding, electron
transfer, electron transport; HET: HEM; 1.29A
{Rubrivivax gelatinosus} SCOP: a.24.3.2 PDB: 1jaf_A*
2j9b_A*
Length = 129
Score = 27.4 bits (60), Expect = 0.70
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 40 SSFKPLQSALFMCESCHKTYKAK 62
++ A C+ CH +K K
Sbjct: 110 AAVGETGGA---CKGCHDKFKEK 129
>1s05_A Cytochrome C-556, C556; THis is A model obtained by -restrained
modeling and minimization., electron transport; HET:
HEM; NMR {Rhodopseudomonas palustris} SCOP: a.24.3.2
Length = 129
Score = 27.3 bits (60), Expect = 0.75
Identities = 6/23 (26%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 40 SSFKPLQSALFMCESCHKTYKAK 62
++ +P+ A C +CH+ ++ K
Sbjct: 108 AAMQPIGKA---CGNCHENFRDK 127
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 0.80
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 79 LQCPFCPYKSKHKSNLKTHM 98
+C C Y ++ KSNLK HM
Sbjct: 10 FKCSLCEYATRSKSNLKAHM 29
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 26.3 bits (59), Expect = 0.92
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 21/59 (35%)
Query: 52 CESCHKTYKAKGSLERHKKF----------ECGKEAGLQCPFCPYKSKHKSNLKTHMAI 100
C+ C +++ KG+L HK CG + F +NLKTH I
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQ------FN-----RPANLKTHTRI 67
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 26.9 bits (59), Expect = 1.0
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 81 CPFCPYKSKHKSNLKTHMAIRHQ 103
C FC +H + HQ
Sbjct: 18 CLFCDRLFASAEETFSHCKLEHQ 40
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 1.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 44 PLQSALFMCESCHKTYKAKGSLERHKKFECGKE 76
+F CE C+K +K K SL+ H + ++
Sbjct: 4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 26.4 bits (59), Expect = 1.0
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 50 FMC--ESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
+ C E C K + L+RH+K G + C + K + H+A H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAG-YPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 26.4 bits (57), Expect = 1.1
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 50 FMCESCHK-TYKAKGSLERHKKFECGKEAG-LQCPFCPYKSKHKSNLKTHMAIRHQN 104
+C +C+ T K L++H + C K L+C C + K K+ L H H
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHME-VCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 26.8 bits (59), Expect = 1.2
Identities = 4/23 (17%), Positives = 13/23 (56%)
Query: 49 LFMCESCHKTYKAKGSLERHKKF 71
+++ + + + +K ER++K
Sbjct: 36 IYIDDFTLQYFGSKKQYERYRKK 58
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 1.5
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 15/34 (44%)
Query: 41 SFKPLQSALFMCESCHKTYKA--------KGSLE 66
+ K LQ++L K Y K ++E
Sbjct: 21 ALKKLQASL-------KLYADDSAPALAIKATME 47
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 26.3 bits (59), Expect = 1.6
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 15/59 (25%)
Query: 50 FMCESCHKTYKAKGSLERH-------KKFECGKEAGLQCPFCPYKS-KHKSNLKTHMAI 100
+C C K + L+RH K F+C E C K NL+TH+ I
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFE---GCG----KRFSLDFNLRTHVRI 86
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 25.8 bits (58), Expect = 1.6
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 52 CESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAI 100
C++C SL +H + E +C CPY S++ S L H+
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSD-ERPFKCQICPYASRNSSQLTVHLRS 86
Score = 25.1 bits (56), Expect = 2.7
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 21/61 (34%)
Query: 50 FMCESCHKTYKAKGSLERHKKF----------ECGKEAGLQCPFCPYKSKHKSNLKTHMA 99
CE C K + K L+ H + C S+L H+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYA------AA-----DSSSLNKHLR 57
Query: 100 I 100
I
Sbjct: 58 I 58
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 26.3 bits (57), Expect = 1.8
Identities = 8/78 (10%), Positives = 21/78 (26%), Gaps = 6/78 (7%)
Query: 31 YSFSSGASFSS-FKPLQSALFMCESCHKTYKAKGSLERHKKFECGK-----EAGLQCPFC 84
++ + + + S R + + + L+C +C
Sbjct: 27 AAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYC 86
Query: 85 PYKSKHKSNLKTHMAIRH 102
+ + +L HM
Sbjct: 87 GHSFESLQDLSVHMIKTK 104
Score = 24.7 bits (53), Expect = 5.4
Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 64 SLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRH 102
S + + G + +C C L HM
Sbjct: 6 SGKLYGSIFTG-ASKFRCKDCSAAYDTLVELTVHMNETG 43
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 25.7 bits (56), Expect = 2.3
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 14/60 (23%)
Query: 50 FMCESCHKTYKAKGSLERH-----------KKFECGKEAGLQCPFCPYKSKHKSNLKTHM 98
+SC +T+ L H C E +CP K K L H+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE---ECPREGKSFKAKYKLVNHI 82
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 25.4 bits (55), Expect = 2.3
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 32 SFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKE 76
F ++ S K MCE C K + +L + + E GK+
Sbjct: 27 IFIRRSTLSRRKT-----PMCEKCRKDSCQEAALNKDEGNESGKK 66
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 25.6 bits (55), Expect = 2.3
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
Query: 32 SFSSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHK 91
SS S + L +C C + + + H+ K+ L C C K
Sbjct: 25 KLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKK--LTCLECMRTFKSS 82
Query: 92 SNLKTHMAIRHQ 103
++ H H
Sbjct: 83 FSIWRHQVEVHN 94
Score = 24.1 bits (51), Expect = 8.6
Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 35 SGASFSSFKPLQS-ALFMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSN 93
+ S P+++ ++ C C+ + H++ CP+C +
Sbjct: 1 GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC---RNAAVCPYCSLRFFSPEL 57
Query: 94 LKTHMA 99
+ H +
Sbjct: 58 KQEHES 63
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 24.4 bits (53), Expect = 2.3
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 34 SSGASFSSFKPLQSALFMCESCHKTYKAKGSLERHKKFECGKEA 77
SSG+S + P F C C + + + L +H++ K
Sbjct: 2 SSGSSGAGENP-----FKCSKCDRVFTQRNYLVQHERTHARKSG 40
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 25.2 bits (56), Expect = 3.3
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 21/59 (35%)
Query: 50 FMCESCHKTYKAKGSLERHKKF----------ECGKEAGLQCPFCPYKSKHKSNLKTHM 98
C +CHK + +K L+ H + +CGK + K NL H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGK------CYF-----RKENLLEHE 55
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 24.8 bits (55), Expect = 3.6
Identities = 14/61 (22%), Positives = 18/61 (29%), Gaps = 21/61 (34%)
Query: 50 FMCESCHKTYKAKGSLERHKKF----------ECGKEAGLQCPFCPYKSKHKSNLKTHMA 99
CE C K ++ L RHK CG F K K + H+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLR------F-----KRKDRMSYHVR 56
Query: 100 I 100
Sbjct: 57 S 57
>2ccy_A Cytochrome C; electron transport (heme protein); HET: HEM; 1.67A
{Phaeospirillum molischianum} SCOP: a.24.3.2
Length = 128
Score = 25.4 bits (55), Expect = 3.7
Identities = 4/22 (18%), Positives = 9/22 (40%), Gaps = 3/22 (13%)
Query: 40 SSFKPLQSALFMCESCHKTYKA 61
+ C++CH+ +K
Sbjct: 109 AQAAATGKV---CKACHEEFKQ 127
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 24.9 bits (55), Expect = 3.8
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 50 FMC--ESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAIRHQN 104
+ C E C + L RH + G QC C +L HM RHQN
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTG-AKPFQCGVCNRSFSRSDHLALHMK-RHQN 100
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.0 bits (51), Expect = 3.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 51 MCESCHKTYKAKGSLERHK 69
+C+ C K +K+KG+L+ HK
Sbjct: 11 LCDMCGKKFKSKGTLKSHK 29
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 24.4 bits (54), Expect = 5.3
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 52 CESCHKTYKAKGSLERHKKF---ECGKEAGLQCPFCPYKSKHKSNLKTHMAI 100
C C KT++ K L+ H K A C C ++ + H
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 24.3 bits (54), Expect = 5.9
Identities = 13/51 (25%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAI 100
F C C + + L H + G E C C K K H I
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTG-EKPFACDICGRKFARSDERKRHTKI 84
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural
G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Length = 284
Score = 25.0 bits (54), Expect = 6.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 49 LFMCESCHKTYKAKGSLERHKK 70
L++CE C K K++ L++H K
Sbjct: 41 LYLCEFCLKYMKSRTILQQHMK 62
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 24.4 bits (54), Expect = 6.1
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 23/61 (37%)
Query: 50 FMCESCHKTYKAKGSLERH------------KKFECGKEAGLQCPFCPYKSKHKSNLKTH 97
F C++C + + L+ H + C K+ F L H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKK------FA-----RSDELVRH 115
Query: 98 M 98
Sbjct: 116 H 116
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 24.0 bits (53), Expect = 6.3
Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 21/61 (34%)
Query: 50 FMCESCHKTYKAKGSLERHKK----------FECGKEAGLQCPFCPYKSKHKSNLKTHMA 99
F C C + + L H + CG++ F K H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK------FA-----RSDERKRHRD 52
Query: 100 I 100
I
Sbjct: 53 I 53
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 24.3 bits (54), Expect = 6.3
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 21/59 (35%)
Query: 52 CESCHKTYKAKGSLERHKKF----------ECGKEAGLQCPFCPYKSKHKSNLKTHMAI 100
C+ CHK ++ + L H+ ECGK FC L H +
Sbjct: 48 CDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGK------GFC-----QSRTLAVHKTL 95
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 23.8 bits (52), Expect = 6.6
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 50 FMC--ESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHM 98
+ C ESC + + L RH + G + QC C +L TH+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHI 69
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction,
transcription; NMR {Drosophila melanogaster} SCOP:
g.37.1.2 PDB: 1y0j_B 2l6z_B
Length = 36
Score = 23.2 bits (49), Expect = 7.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 45 LQSALFMCESCHKTYKAKGSLERHKKFEC 73
L+ A FMC C + + +LE H+ + C
Sbjct: 4 LKPARFMCLPCGIAFSSPSTLEAHQAYYC 32
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 24.7 bits (54), Expect = 8.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 31 YSFSSGASFSSFKPLQSALFMCESCHKTY 59
YS SS + + + + + CE+ HKT
Sbjct: 215 YSMSSTLTLTKDEYERHNSYTCEATHKTS 243
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural
genomics, structural genomics consortium, SGC; HET:
COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A*
3toa_A* 3tob_A*
Length = 278
Score = 24.5 bits (53), Expect = 8.7
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 49 LFMCESCHKTYKAKGSLERHKK 70
L++CE C K K + S H
Sbjct: 36 LWLCEYCLKYMKYEKSYRFHLG 57
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural
genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo
sapiens}
Length = 280
Score = 24.5 bits (53), Expect = 9.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 49 LFMCESCHKTYKAKGSLERHKK 70
L++CE C K ++ L+RH
Sbjct: 34 LYLCEFCLKYGRSLKCLQRHLT 55
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 24.6 bits (53), Expect = 9.3
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 51 MCESCHKTYKAKGSLERHKKFECGKEAGLQC-PFCPYKSKHKSNLKTHM 98
C++C + C A +C P +H + M
Sbjct: 531 SCKACQMLLRGTFYQGYRCH-RCRASAHKECLGRVPPCGRHGQDFPGTM 578
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 22.8 bits (48), Expect = 9.9
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 50 FMCESCHKTYKAKGSLERHKKFECGKE 76
++C C + + G+L+RH + G++
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 24.3 bits (53), Expect = 9.9
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 52 CESCHKTYKAKGSLERHKKFECGK---EAGLQCPFC 84
C SCH T +H+ + + C C
Sbjct: 36 CVSCHGTLAEVAETTKHEHYNAHASHFPGEVACTSC 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.134 0.438
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,522,167
Number of extensions: 70082
Number of successful extensions: 638
Number of sequences better than 10.0: 1
Number of HSP's gapped: 578
Number of HSP's successfully gapped: 146
Length of query: 108
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 36
Effective length of database: 4,691,481
Effective search space: 168893316
Effective search space used: 168893316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.0 bits)