RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3491
(108 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 32.7 bits (74), Expect = 0.001
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 50 FMCESCHKTYKAKGSLERHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAI 100
+ C+ C K++ K +RH G C C K K K +L HM I
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPY-GCGVCGKKFKMKHHLVGHMKI 52
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 31.3 bits (70), Expect = 0.002
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 80 QCPFCPYKSKHKSNLKTHMAIRHQN 104
QC +C ++S SNLKTH+ +H
Sbjct: 4 QCQYCEFRSADSSNLKTHIKTKHSK 28
>d1cpqa_ a.24.3.2 (A:) Cytochrome c' {Rhodobacter capsulatus [TaxId:
1061]}
Length = 129
Score = 28.1 bits (62), Expect = 0.14
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 41 SFKPLQSALFMCESCHKTYKAK 62
+ + L C++CH Y+ +
Sbjct: 110 ALQKLGGT---CKACHDDYREE 128
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 28.2 bits (63), Expect = 0.15
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 49 LFMCESCHKTYKAKGSLERHKK 70
+++ + + + +K ER++K
Sbjct: 34 IYIDDFTLQYFGSKKQYERYRK 55
>d1bbha_ a.24.3.2 (A:) Cytochrome c' {Chromatium vinosum [TaxId:
1049]}
Length = 131
Score = 28.0 bits (62), Expect = 0.16
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Query: 41 SFKPLQSALFMCESCHKTYKAK 62
+F + +A C+SCH+ Y+AK
Sbjct: 113 AFGDVGAA---CKSCHEKYRAK 131
>d1gqaa_ a.24.3.2 (A:) Cytochrome c' {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 130
Score = 27.6 bits (61), Expect = 0.17
Identities = 5/22 (22%), Positives = 10/22 (45%), Gaps = 3/22 (13%)
Query: 41 SFKPLQSALFMCESCHKTYKAK 62
+ + C+SCH ++ K
Sbjct: 111 AVGKVGGT---CKSCHDDFRVK 129
>d1s05a_ a.24.3.2 (A:) Cytochrome c-556 {Rhodopseudomonas palustris
[TaxId: 1076]}
Length = 129
Score = 27.6 bits (61), Expect = 0.19
Identities = 6/22 (27%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 41 SFKPLQSALFMCESCHKTYKAK 62
+ +P+ A C +CH+ ++ K
Sbjct: 109 AMQPIGKA---CGNCHENFRDK 127
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.1 bits (58), Expect = 0.19
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 80 QCPFCPYKSKHKSNLKTHMAIRH 102
+C C + +K H+ +H
Sbjct: 10 ECYICHARFTQSGTMKMHILQKH 32
Score = 23.4 bits (51), Expect = 1.7
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 50 FMCESCHKTYKAKGSLERHKK 70
+ C CH + G+++ H
Sbjct: 9 YECYICHARFTQSGTMKMHIL 29
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.8 bits (57), Expect = 0.25
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 80 QCPFCPYKSKHKSNLKTHMAIRH 102
C C + K L H H
Sbjct: 10 ACSHCDKTFRQKQLLDMHFKRYH 32
Score = 24.2 bits (53), Expect = 1.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 50 FMCESCHKTYKAKGSLERHKK 70
+ C C KT++ K L+ H K
Sbjct: 9 YACSHCDKTFRQKQLLDMHFK 29
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 27.5 bits (61), Expect = 0.26
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 46 QSALFMCESCHKTYKAKGSLERHKK 70
Q L++CE C K K + S H
Sbjct: 28 QPKLWLCEYCLKYMKYEKSYRFHLG 52
>d1mqva_ a.24.3.2 (A:) Cytochrome c' {Rhodopseudomonas palustris
[TaxId: 1076]}
Length = 123
Score = 26.9 bits (59), Expect = 0.34
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 41 SFKPLQSALFMCESCHKTYKAK 62
+ + C+SCH ++AK
Sbjct: 105 NIGGVLGN---CKSCHDDFRAK 123
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 25.3 bits (56), Expect = 0.40
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 80 QCPFCPYKSKHKSNLKTHMAIRH 102
C C +L H+ H
Sbjct: 7 ICQSCGKGFSRPDHLNGHIKQVH 29
Score = 23.8 bits (52), Expect = 1.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 50 FMCESCHKTYKAKGSLERHKK 70
++C+SC K + L H K
Sbjct: 6 YICQSCGKGFSRPDHLNGHIK 26
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 27.1 bits (60), Expect = 0.44
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 49 LFMCESCHKTYKAKGSLERHKK 70
L++CE C K K++ L++H K
Sbjct: 31 LYLCEFCLKYMKSRTILQQHMK 52
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.0 bits (55), Expect = 0.46
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 80 QCPFCPYKSKHKSNLKTHMAI 100
CP CP + +L H+
Sbjct: 4 ACPECPKRFMRSDHLSKHIKT 24
Score = 23.1 bits (50), Expect = 2.4
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 50 FMCESCHKTYKAKGSLERHKK 70
F C C K + L +H K
Sbjct: 3 FACPECPKRFMRSDHLSKHIK 23
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 24.6 bits (53), Expect = 0.64
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 79 LQCPFCPYKSKHKSNLKTHMAIRHQN 104
+C +C + +K SNL HM H +
Sbjct: 3 FKCNYCSFDTKQPSNLSKHMKKFHGD 28
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 24.5 bits (54), Expect = 0.71
Identities = 5/21 (23%), Positives = 6/21 (28%)
Query: 80 QCPFCPYKSKHKSNLKTHMAI 100
C C S L H +
Sbjct: 9 GCVECGKAFSRSSILVQHQRV 29
Score = 24.5 bits (54), Expect = 0.79
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 50 FMCESCHKTYKAKGSLERHKK 70
+ C C K + L +H++
Sbjct: 8 YGCVECGKAFSRSSILVQHQR 28
>d2ghfa2 g.37.1.1 (A:9-44) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 24.3 bits (52), Expect = 0.88
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 76 EAGLQCPFCPYKSKHKSNLKTHMAIRHQN 104
E G +C +C +++ + H+ H N
Sbjct: 8 EGGYECKYCTFQTPDLNMFTFHVDSEHPN 36
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 121
Score = 25.6 bits (56), Expect = 0.97
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 80 QCPFCPYKSKHKSNLKTHMAIRHQ 103
C FC +H + HQ
Sbjct: 17 PCLFCDRLFASAEETFSHCKLEHQ 40
>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz
{Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 24.3 bits (53), Expect = 1.00
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 49 LFMCESCHKTYKAKGSLERHKK 70
L++CE C K K++ L++H K
Sbjct: 7 LYLCEFCLKYMKSRTILQQHMK 28
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 23.7 bits (52), Expect = 1.3
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 80 QCPFCPYKSKHKSNLKTHMAI 100
C C + +LK H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS 24
Score = 23.0 bits (50), Expect = 2.5
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 50 FMCESCHKTYKAKGSLERHKK 70
F+CE C + + + L+RH +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR 23
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.8 bits (51), Expect = 1.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 76 EAGLQCPFCPYKSKHKSNLKTHM 98
E +C CPY S++ S L H+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHL 23
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 23.9 bits (51), Expect = 1.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 48 ALFMCESCHKTYKAKGSLERH 68
A F+C C KT+ + ++ RH
Sbjct: 3 AAFVCSKCGKTFTRRNTMARH 23
>d2j8wa1 a.24.3.2 (A:1-128) Cytochrome c' {Rhodocyclus gelatinosus
[TaxId: 28068]}
Length = 128
Score = 24.9 bits (54), Expect = 2.0
Identities = 5/20 (25%), Positives = 8/20 (40%), Gaps = 3/20 (15%)
Query: 41 SFKPLQSALFMCESCHKTYK 60
+ A C+ CH +K
Sbjct: 111 AVGETGGA---CKGCHDKFK 127
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor,
different fingers {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 36
Score = 23.5 bits (50), Expect = 2.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 45 LQSALFMCESCHKTYKAKGSLERHKKFEC 73
L+ A FMC C + + +LE H+ + C
Sbjct: 4 LKPARFMCLPCGIAFSSPSTLEAHQAYYC 32
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 23.2 bits (50), Expect = 2.2
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 67 RHKKFECGKEAGLQCPFCPYKSKHKSNLKTHMAI 100
R + + +C C H S+L H
Sbjct: 2 RSEWQQRE-RRRYKCDECGKSFSHSSDLSKHRRT 34
>d2ccya_ a.24.3.2 (A:) Cytochrome c' {Rhodospirillum molischianum
[TaxId: 1083]}
Length = 127
Score = 24.6 bits (53), Expect = 2.2
Identities = 4/21 (19%), Positives = 8/21 (38%), Gaps = 3/21 (14%)
Query: 41 SFKPLQSALFMCESCHKTYKA 61
C++CH+ +K
Sbjct: 109 QAAATGKV---CKACHEEFKQ 126
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 23.0 bits (50), Expect = 2.3
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 50 FMCESCHKTYKAKGSLERHKK 70
F C C + + L H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR 24
Score = 22.2 bits (48), Expect = 4.3
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 80 QCPFCPYKSKHKSNLKTHMAI 100
QC C +L TH+
Sbjct: 5 QCRICMRNFSRSDHLTTHIRT 25
>d1e85a_ a.24.3.2 (A:) Cytochrome c' {Alcaligenes sp. [TaxId: 512]}
Length = 125
Score = 24.5 bits (53), Expect = 2.7
Identities = 5/20 (25%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Query: 41 SFKPLQSALFMCESCHKTYK 60
+F + ++ C++CH Y+
Sbjct: 108 AFGDVGAS---CKACHDAYR 124
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 23.5 bits (51), Expect = 2.9
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 50 FMCESCHKTYKAKGSLERHKK 70
C +C + + +L+ H +
Sbjct: 16 HRCLACARYFIDSTNLKTHFR 36
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 22.8 bits (49), Expect = 3.9
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 50 FMCESCHKTYKAKGSLERHKK 70
F C C +++ L H+K
Sbjct: 12 FQCPDCDRSFSRSDHLALHRK 32
Score = 22.4 bits (48), Expect = 5.2
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 80 QCPFCPYKSKHKSNLKTHMAI 100
QCP C +L H
Sbjct: 13 QCPDCDRSFSRSDHLALHRKR 33
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 22.0 bits (46), Expect = 6.3
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 52 CESCHKTYKAKGSLERHKKFECGKE 76
C +CHK + +K L+ H + G++
Sbjct: 3 CPTCHKKFLSKYYLKVHNRKHTGEK 27
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId:
7227]}
Length = 54
Score = 22.4 bits (47), Expect = 6.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 81 CPFCPYKSKHKSNLKTHMAIRH 102
CP C + NL+ H+ +RH
Sbjct: 27 CPICYAVIRQSRNLRRHLELRH 48
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 21.6 bits (45), Expect = 7.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 77 AGLQCPFCPYKSKHKSNLKTHMAIRH 102
A CP C KS+L H+ +H
Sbjct: 1 AKFHCPHCDTVIARKSDLGVHLRKQH 26
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 21.5 bits (45), Expect = 7.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 81 CPFCPYKSKHKSNLKTHMAIRHQ 103
CPFC + K N+ H+ I H+
Sbjct: 4 CPFCFKEFTRKDNMTAHVKIIHK 26
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 21.5 bits (46), Expect = 9.4
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 6/32 (18%)
Query: 69 KKFECGKEAGLQCPFCPYKSKHKSNLKTHMAI 100
+ F C +C + L+ H
Sbjct: 1 RPFMCT------WSYCGKRFTRSDELQRHKRT 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.134 0.438
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 387,630
Number of extensions: 15418
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 73
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.4 bits)