RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3492
(85 letters)
>gnl|CDD|128889 smart00641, Glyco_25, Glycosyl hydrolases family 25.
Length = 109
Score = 29.3 bits (66), Expect = 0.099
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 6/29 (20%)
Query: 9 SYNWCLKRHLNTHIKPFNCALCEYKAARP 37
SY + L + ++ F Y AA P
Sbjct: 42 SYQYFLADNAGYILRGF------YHAAYP 64
>gnl|CDD|237106 PRK12459, PRK12459, S-adenosylmethionine synthetase; Provisional.
Length = 386
Score = 27.6 bits (62), Expect = 0.73
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 31 EYKAARPERLATHVIKV-HNKRICSKCSFLADDQETLNEHLQQHIFWEC 78
EY+ RP R+ T V+ H++ + D ETL + +++
Sbjct: 175 EYEDGRPVRVDTIVVSAQHDESV---------DLETLRRDVIENVIKPV 214
>gnl|CDD|226762 COG4312, COG4312, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 247
Score = 27.0 bits (60), Expect = 0.94
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 53 CSKCSFLADDQETLNEHLQQH 73
C CSFLAD + HL+ H
Sbjct: 91 CPGCSFLADHWDGAVAHLEHH 111
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein.
Length = 369
Score = 26.7 bits (59), Expect = 1.3
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 56 CSFLADDQETLNEHLQQHIFWEC 78
C FL Q+TL +HL +H F +C
Sbjct: 203 CKFLGA-QDTLYDHLGRHYFKDC 224
>gnl|CDD|234726 PRK00321, rdgC, recombination associated protein; Reviewed.
Length = 303
Score = 26.0 bits (58), Expect = 2.7
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 62 DQETLNEHLQQHIFWECSFQDAQT 85
D E L E L + F C QD +
Sbjct: 18 DAEELEEQLAKFAFTPCGSQDMSS 41
>gnl|CDD|218052 pfam04381, RdgC, Putative exonuclease, RdgC. Members of the RdgC
family may have exonuclease activity. RdgC is required
for efficient pilin variation in Neisseria gonorrhoeae,
suggesting that it may be involved in recombination
reactions. In Escherichia coli, RdgC is required for
growth in recombination-deficient exonuclease-depleted
strains. Under these conditions, RdgC may act as an
exonuclease to remove collapsed replication forks, in
the absence of the normal repair mechanisms.
Length = 300
Score = 26.0 bits (58), Expect = 2.8
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 62 DQETLNEHLQQHIFWECSFQDAQT 85
E L E L + F C QD +
Sbjct: 17 SAEQLEEQLAEFAFTPCGSQDMSS 40
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 25.5 bits (57), Expect = 3.7
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Query: 8 ISYNWCLKRHLNTH 21
+SYN CL RHL T
Sbjct: 68 VSYN-CLDRHLKTR 80
>gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell
envelope biogenesis, outer membrane].
Length = 475
Score = 25.4 bits (56), Expect = 3.9
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 29 LCEYKAARPERLATHVIKVHNKRICSKCSFLADDQETLNEHLQQHIFWECSFQDAQ 84
+ Y AA+ L + I D +E L L +I + C F+
Sbjct: 201 MEYYGAAKA-VLFESLPHSGEAVINPDDGHGLDYKERLKNALGDYITYGCDFKRPD 255
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 23.9 bits (52), Expect = 4.0
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 14 LKRHLNTHI--KPFNCALCEYKAAR 36
L+RH+ TH KP+ C +C +
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|197308 cd09074, INPP5c, Catalytic domain of inositol polyphosphate
5-phosphatases. Inositol polyphosphate 5-phosphatases
(5-phosphatases) are signal-modifying enzymes, which
hydrolyze the 5-phosphate from the inositol ring of
specific 5-position phosphorylated phosphoinositides
(PIs) and inositol phosphates (IPs), such as PI(4,5)P2,
PI(3,4,5)P3, PI(3,5)P2, I(1,4,5)P3, and I(1,3,4,5)P4.
These enzymes are Mg2+-dependent, and belong to the
large EEP (exonuclease/endonuclease/phosphatase)
superfamily that contains functionally diverse enzymes
that share a common catalytic mechanism of cleaving
phosphodiester bonds. In addition to this INPP5c domain,
5-phosphatases often contain additional domains and
motifs, such as the SH2 domain, the Sac-1 domain, the
proline-rich domain (PRD), CAAX, RhoGAP
(RhoGTPase-activating protein), and SKICH [SKIP
(skeletal muscle- and kidney-enriched inositol
phosphatase) carboxyl homology] domains, that are
important for protein-protein interactions and/or for
the subcellular localization of these enzymes.
5-phosphatases incorporate into large signaling
complexes, and regulate diverse cellular processes
including postsynaptic vesicular trafficking, insulin
signaling, cell growth and survival, and endocytosis.
Loss or gain of function of 5-phosphatases is implicated
in certain human diseases. This family also contains a
functionally unrelated nitric oxide transport protein,
Cimex lectularius (bedbug) nitrophorin, which catalyzes
a heme-assisted S-nitrosation of a proximal thiolate;
the heme however binds at a site distinct from the
active site of the 5-phosphatases.
Length = 299
Score = 25.4 bits (56), Expect = 4.2
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 3 RLQVLISYNWCLKRHLNTHIKPFNCALCEYKAARPERLATH-----VIKVHNKRICSKCS 57
+L + + + K HL IK +L ++++ C S
Sbjct: 82 QLVGIFLFVFVKKEHLP-QIKDLEVEGVTVGTGGGGKLGNKGGVAIRFQINDTSFCFVNS 140
Query: 58 FLADDQETLNEHLQ 71
LA QE + Q
Sbjct: 141 HLAAGQEEVERRNQ 154
>gnl|CDD|218843 pfam05988, DUF899, Bacterial protein of unknown function (DUF899).
This family consists of several uncharacterized
bacterial proteins of unknown function.
Length = 211
Score = 25.3 bits (56), Expect = 4.3
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 53 CSKCSFLADDQETLNEHLQQH 73
C CSFLAD + HL
Sbjct: 85 CPGCSFLADHFDGALAHLAAR 105
>gnl|CDD|107381 cd06386, PBP1_NPR_C_like, Ligand-binding domain of type C
natriuretic peptide receptor. Ligand-binding domain of
type C natriuretic peptide receptor (NPR-C). NPR-C is
found in atrial, mesentery, placenta, lung, kidney,
venous tissue, aortic smooth muscle, and aortic
endothelial cells. The affinity of NPR-C for
natriuretic peptides is ANP>CNP>BNP. The extracellular
domain of NPR-C is about 30% identical to NPR-A and
NPR-B. However, unlike the cyclase-linked receptors, it
contains only 37 intracellular amino acids and no
guanylyl cyclase activity. Major function of NPR-C is
to clear natriuretic peptides from the circulation or
extracellular surroundings through constitutive
receptor-mediated internalization and degradation.
Length = 387
Score = 25.1 bits (55), Expect = 5.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 29 LCEYKAARPERLATH 43
+CEY AA RLA+H
Sbjct: 75 VCEYAAAPVARLASH 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.135 0.456
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,048,483
Number of extensions: 296592
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 20
Length of query: 85
Length of database: 10,937,602
Length adjustment: 53
Effective length of query: 32
Effective length of database: 8,586,840
Effective search space: 274778880
Effective search space used: 274778880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.3 bits)