RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3492
         (85 letters)



>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 28.4 bits (63), Expect = 0.017
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 23 KPFNCALCEYKAARPERLATHVIKVH 48
          +PF C  C +   +P  L+ H+ K H
Sbjct: 1  RPFKCNYCSFDTKQPSNLSKHMKKFH 26


>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
          Length = 30

 Score = 28.2 bits (62), Expect = 0.020
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 23 KPFNCALCEYKAARPERLATHVIKVHNK 50
          K + C  CE+++A    L TH+   H+K
Sbjct: 1  KTYQCQYCEFRSADSSNLKTHIKTKHSK 28


>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
          Saccharomyces cerevisiae sequence}
          Length = 31

 Score = 25.2 bits (55), Expect = 0.26
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 24 PFNCALCEYKAARPERLATHVIKVHN 49
          P+ C LC     R + L  H  K+H+
Sbjct: 1  PYPCGLCNRAFTRRDLLIRHAQKIHS 26


>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 25.3 bits (56), Expect = 0.28
 Identities = 6/31 (19%), Positives = 16/31 (51%)

Query: 20 THIKPFNCALCEYKAARPERLATHVIKVHNK 50
          +  KP+ C +C  +  +   +  H+++ H +
Sbjct: 4  SGEKPYECYICHARFTQSGTMKMHILQKHTE 34


>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 39

 Score = 25.0 bits (55), Expect = 0.35
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 23 KPFNCALCEYKAARPERLATHVIKVH 48
          KP+ C  C    +RP+ L  H+ +VH
Sbjct: 4  KPYICQSCGKGFSRPDHLNGHIKQVH 29


>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 32

 Score = 24.2 bits (52), Expect = 0.56
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 23 KPFNCALCEYKAARPERLATHV 44
          KP++C +C  +  R +R++ HV
Sbjct: 2  KPYSCPVCGLRFKRKDRMSYHV 23


>d2ghfa1 g.37.1.1 (A:45-102) Zinc fingers and homeoboxes protein
          1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 24.5 bits (53), Expect = 0.95
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 25 FNCALCEYKAARPERLATHVIKVH 48
          + C  C +   R + L+ H +K H
Sbjct: 7  YVCVECNFLTKRYDALSEHNLKYH 30



 Score = 23.3 bits (50), Expect = 1.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 52 ICSKCSFLADDQETLNEH 69
          +C +C+FL    + L+EH
Sbjct: 8  VCVECNFLTKRYDALSEH 25


>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 22.7 bits (48), Expect = 2.7
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 23 KPFNCALCEYKAARPERLATHV 44
          +PF C +C Y +    +L  H+
Sbjct: 2  RPFKCQICPYASRNSSQLTVHL 23


>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 28

 Score = 22.4 bits (47), Expect = 2.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 22 IKPFNCALCEYKAARPERLATH 43
          +KP+ C  C+Y AA    L  H
Sbjct: 1  VKPYKCKTCDYAAADSSSLNKH 22



 Score = 21.6 bits (45), Expect = 6.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 53 CSKCSFLADDQETLNEHLQQH 73
          C  C + A D  +LN+HL+ H
Sbjct: 6  CKTCDYAAADSSSLNKHLRIH 26


>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 29

 Score = 21.5 bits (46), Expect = 6.5
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 23 KPFNCALCEYKAARPERLATH 43
          K F C  C  +  R + L+ H
Sbjct: 1  KKFACPECPKRFMRSDHLSKH 21


>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 21.2 bits (45), Expect = 8.0
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 20 THIKPFNCALCEYKAARPERLATHVIKVHNK 50
          T  KP+ C+ C+    + + L  H  + H+ 
Sbjct: 4  TGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.135    0.456 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 318,005
Number of extensions: 12142
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 21
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)