BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3495
(266 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P16258|OSBP1_RABIT Oxysterol-binding protein 1 OS=Oryctolagus cuniculus GN=OSBP PE=1
SV=1
Length = 809
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 119/192 (61%), Gaps = 17/192 (8%)
Query: 8 SDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQ 67
SD DEE + +L+N ++TLS +E L + N++I KHG AL R+LSELES P
Sbjct: 192 SDESGDEESVSQTDKTELQNTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELESLKLPA 251
Query: 68 ELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLE 127
E +IK++NERATLFRIT+NAMIN+C +L +AQT KWQ+ LQ+ERDQR++LEE LE
Sbjct: 252 ESNEKIKQVNERATLFRITSNAMINACRDFLVLAQTHSKKWQKSLQYERDQRIRLEETLE 311
Query: 128 QMA----------RCSTGPPVHDSGPRLGGL-----PREEEAEDEEDSVFYDANEVMT-- 170
Q+A R +T P H SG G + + +++++++ F+DA E++T
Sbjct: 312 QLAKQHNHLERAFRGATVLPAHTSGSAGSGKDQCCSGKGDMSDEDDENEFFDAPEIITMP 371
Query: 171 ENGGLDPAGRGL 182
EN G G +
Sbjct: 372 ENLGHKRTGSNI 383
>sp|P22059|OSBP1_HUMAN Oxysterol-binding protein 1 OS=Homo sapiens GN=OSBP PE=1 SV=1
Length = 807
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 118/192 (61%), Gaps = 17/192 (8%)
Query: 8 SDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQ 67
SD DEE + +L+N ++TLS +E L + N++I KHG AL R+LSELES P
Sbjct: 190 SDESGDEESVSQTDKTELQNTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELESLKLPA 249
Query: 68 ELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLE 127
E +IK++NERATLFRIT+NAMIN+C +L +AQT KWQ+ LQ+ERDQR++LEE LE
Sbjct: 250 ESNEKIKQVNERATLFRITSNAMINACRDFLMLAQTHSKKWQKSLQYERDQRIRLEETLE 309
Query: 128 QMA----------RCSTGPPVHDSGPRLGGL-----PREEEAEDEEDSVFYDANEVMT-- 170
Q+A R +T P + G G + + +++++++ F+DA E++T
Sbjct: 310 QLAKQHNHLERAFRGATVLPANTPGNVGSGKDQCCSGKGDMSDEDDENEFFDAPEIITMP 369
Query: 171 ENGGLDPAGRGL 182
EN G G +
Sbjct: 370 ENLGHKRTGSNI 381
>sp|Q3B7Z2|OSBP1_MOUSE Oxysterol-binding protein 1 OS=Mus musculus GN=Osbp PE=1 SV=3
Length = 805
Score = 134 bits (336), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 118/192 (61%), Gaps = 17/192 (8%)
Query: 8 SDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQ 67
SD DEE + +L++ ++TLS +E L + N++I KHG AL R+LSELES P
Sbjct: 188 SDDSGDEESVSQTDKTELQSTLRTLSSKVEDLSTCNDLIAKHGTALQRSLSELESLKLPA 247
Query: 68 ELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLE 127
E +IK++NERATLFRIT+NAMIN+C +L +AQT KWQ+ LQ+ERDQR++LEE LE
Sbjct: 248 ESNEKIKQVNERATLFRITSNAMINACRDFLMLAQTHSKKWQKSLQYERDQRIRLEETLE 307
Query: 128 QMA----------RCSTGPPVHDSGPRLGGL-----PREEEAEDEEDSVFYDANEVMT-- 170
Q+A R +T P + G G + + +++++++ F+DA E++T
Sbjct: 308 QLAKQHNHLERAFRGATVLPANPPGSAGSGKDQCCSGKGDMSDEDDENEFFDAPEIITMP 367
Query: 171 ENGGLDPAGRGL 182
EN G G +
Sbjct: 368 ENLGHKRTGSNI 379
>sp|Q5QNQ6|OSBP2_MOUSE Oxysterol-binding protein 2 OS=Mus musculus GN=Osbp2 PE=2 SV=1
Length = 908
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 101/156 (64%), Gaps = 13/156 (8%)
Query: 25 LENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFR 84
L + +KTLS+ L L + N++I KHGAAL R+L+EL+S P E ++K +NERATLFR
Sbjct: 300 LHHTLKTLSLKLNDLSTCNDLIAKHGAALQRSLNELDSLKIPSECGEKLKVVNERATLFR 359
Query: 85 ITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMAR---------CST- 134
IT+NAMIN+C +LE+A+T KWQR L +E++QR+ LEE +EQ+A+ C+T
Sbjct: 360 ITSNAMINACRDFLELAETHSRKWQRALNYEQEQRVHLEETIEQLAKQHNSLERAFCNTP 419
Query: 135 -GPPVHDSGPRLGGL--PREEEAEDEEDSVFYDANE 167
GP G + E +E++ED+ ++DA E
Sbjct: 420 GGPASSSKSFSEGSFLTSKGENSEEDEDTEYFDAME 455
>sp|Q969R2|OSBP2_HUMAN Oxysterol-binding protein 2 OS=Homo sapiens GN=OSBP2 PE=1 SV=2
Length = 916
Score = 117 bits (294), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 80/107 (74%)
Query: 25 LENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFR 84
L + +K LS+ L+ L + N++I KHGAAL R+L+EL+ P E ++K +NERATLFR
Sbjct: 302 LHHTLKNLSLKLDDLSTCNDLIAKHGAALQRSLTELDGLKIPSESGEKLKVVNERATLFR 361
Query: 85 ITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMAR 131
IT+NAMIN+C +LE+A+ KWQR LQ+E++QR+ LEE +EQ+A+
Sbjct: 362 ITSNAMINACRDFLELAEIHSRKWQRALQYEQEQRVHLEETIEQLAK 408
>sp|Q9GKI7|C43BP_BOVIN Collagen type IV alpha-3-binding protein OS=Bos taurus GN=COL4A3BP
PE=2 SV=1
Length = 624
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 24/133 (18%)
Query: 80 ATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEE-----LLEQMARCST 134
A F+ TT ++ + +E+ + WQ+ + E ++R ++EE + E +
Sbjct: 245 AITFKATTAGILATLSHCIELMVKREDSWQKRMDKETEKRRRVEEAYKNAMTELKKKSHF 304
Query: 135 GPPVHDSGPRLGGLPREEEAEDEEDSVFYDANEVMTENGGLDPAGR----GLLEPVRYPY 190
G P ++ GP L EEE F+DA E LD + E VR +
Sbjct: 305 GGPDYEEGP--NSLINEEE--------FFDAVE-----AALDRQDKIEEQSQSEKVRLHW 349
Query: 191 SPHFPSCSLMTQV 203
S PS + V
Sbjct: 350 STSMPSGDAFSSV 362
>sp|Q6NRZ4|C43BP_XENLA Collagen type IV alpha-3-binding protein OS=Xenopus laevis
GN=col4a3bp PE=2 SV=1
Length = 617
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 80 ATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEE-----LLEQMARCST 134
A F+ TT ++ + +E+ + WQ+ L E ++R ++EE + E +
Sbjct: 244 AITFKATTAGILATLSHCIELMVKREDSWQKRLDKEIEKRRRVEEAYKNAMTELKKKSHF 303
Query: 135 GPPVHDSGPRLGGLPREEEAEDEEDSVFYDANEV 168
G P ++ GP L EEE F+DA E
Sbjct: 304 GGPDYEEGP--NSLINEEE--------FFDAVEA 327
>sp|Q9DKU0|TRM1_ELHVK Tripartite terminase subunit UL28 homolog OS=Elephantid herpesvirus
1 (isolate Asian elephant/Berlin/Kiba/1998) PE=3 SV=2
Length = 692
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 26 ENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRI 85
E IIKT+++ ++QL YN + K ++ R L+++E D + K +++R +F
Sbjct: 306 EKIIKTMNMTMQQLNVYNNNMIKLKRSISRALNDIEVRDCFDVFE---KVVDKRHCMF-- 360
Query: 86 TTNAMINSCGKYLEIAQTQ 104
+M S K + + TQ
Sbjct: 361 -LGSMFTSSAKIISLLATQ 378
>sp|O90368|POLN_ONNVS Non-structural polyprotein OS=O'nyong-nyong virus (strain SG650) PE=2
SV=1
Length = 2513
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 228 NLPPRTSPSSLPPVDENSTTP-LPNSKCQDA 257
N+P R SP + P DE TP +P CQDA
Sbjct: 1647 NVPSRVSPRTYRPADEIIQTPQIPTEACQDA 1677
>sp|Q6P3Q6|C43BP_XENTR Collagen type IV alpha-3-binding protein OS=Xenopus tropicalis
GN=col4a3bp PE=2 SV=1
Length = 617
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 80 ATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEE-----LLEQMARCST 134
A F+ TT ++ + +++ + WQ+ L E ++R ++EE + E +
Sbjct: 244 AITFKATTAGILATLSHCIDLMVKREDSWQKRLDKEIEKRRRVEEAYKNAMTELKKKSHF 303
Query: 135 GPPVHDSGPRLGGLPREEEAEDEEDSVFYDANEV 168
G P ++ GP L EEE F+DA E
Sbjct: 304 GGPDYEEGP--NSLINEEE--------FFDAVEA 327
>sp|Q5R407|UBP5_PONAB Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii GN=UBP5
PE=2 SV=1
Length = 858
Score = 31.2 bits (69), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 4 ITIFSDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESC 63
I + F EE FE+D +VK+ + L + + L +I+ + + L +S
Sbjct: 101 IGVEGGFDLSEEKFELDEDVKIVILPDYLEIARDGLGGLPDIVRDRVTSAVEALLSADSA 160
Query: 64 DNPQELQC---QIKEINERA-TLFRITTNAMINSCG 95
QE+Q +++++++ A +L ++ A I CG
Sbjct: 161 SRKQEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCG 196
>sp|P45974|UBP5_HUMAN Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5
PE=1 SV=2
Length = 858
Score = 31.2 bits (69), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 4 ITIFSDFVSDEEDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESC 63
I + F EE FE+D +VK+ + L + + L +I+ + + L +S
Sbjct: 101 IGVEGGFDLSEEKFELDEDVKIVILPDYLEIARDGLGGLPDIVRDRVTSAVEALLSADSA 160
Query: 64 DNPQELQC---QIKEINERA-TLFRITTNAMINSCG 95
QE+Q +++++++ A +L ++ A I CG
Sbjct: 161 SRKQEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCG 196
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,114,723
Number of Sequences: 539616
Number of extensions: 4575481
Number of successful extensions: 13070
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 13040
Number of HSP's gapped (non-prelim): 54
length of query: 266
length of database: 191,569,459
effective HSP length: 115
effective length of query: 151
effective length of database: 129,513,619
effective search space: 19556556469
effective search space used: 19556556469
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)