Query psy3495
Match_columns 266
No_of_seqs 80 out of 82
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 18:09:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1739|consensus 99.4 2.5E-14 5.4E-19 141.0 2.2 137 29-170 154-328 (611)
2 KOG1737|consensus 99.3 1.5E-12 3.3E-17 133.8 7.3 140 30-170 202-357 (799)
3 PF04108 APG17: Autophagy prot 89.2 7.6 0.00017 37.8 12.4 116 18-134 246-373 (412)
4 PF10168 Nup88: Nuclear pore c 86.8 3.7 8E-05 43.2 9.1 111 24-134 540-663 (717)
5 cd00890 Prefoldin Prefoldin is 85.5 9.6 0.00021 30.0 9.0 106 24-129 3-127 (129)
6 PF11214 Med2: Mediator comple 84.3 19 0.00041 30.1 10.4 89 31-121 4-99 (105)
7 PF11932 DUF3450: Protein of u 80.7 29 0.00063 31.2 11.2 70 21-99 50-119 (251)
8 PF05010 TACC: Transforming ac 76.6 61 0.0013 29.6 13.3 68 33-109 68-135 (207)
9 PF04156 IncA: IncA protein; 76.3 47 0.001 28.2 12.9 69 21-98 82-150 (191)
10 PRK03947 prefoldin subunit alp 73.6 49 0.0011 27.1 9.8 109 25-133 11-138 (140)
11 PF08317 Spc7: Spc7 kinetochor 72.2 88 0.0019 29.5 12.2 104 27-134 149-268 (325)
12 cd07628 BAR_Atg24p The Bin/Amp 72.0 67 0.0015 28.0 13.8 111 21-131 5-133 (185)
13 PF14523 Syntaxin_2: Syntaxin- 68.5 50 0.0011 25.2 10.5 87 46-133 8-101 (102)
14 TIGR02338 gimC_beta prefoldin, 65.4 69 0.0015 25.6 12.3 100 24-128 7-106 (110)
15 cd07667 BAR_SNX30 The Bin/Amph 64.3 1.3E+02 0.0027 28.2 12.7 112 22-133 53-190 (240)
16 KOG1842|consensus 64.1 44 0.00095 34.4 8.9 50 92-141 373-422 (505)
17 cd00584 Prefoldin_alpha Prefol 64.0 71 0.0015 25.6 8.7 106 24-129 3-127 (129)
18 smart00806 AIP3 Actin interact 63.9 1.7E+02 0.0037 29.8 12.9 70 39-117 215-289 (426)
19 cd00632 Prefoldin_beta Prefold 63.4 73 0.0016 25.1 12.6 100 25-129 4-103 (105)
20 PF15233 SYCE1: Synaptonemal c 63.3 1E+02 0.0022 26.9 10.6 93 20-134 13-106 (134)
21 PF10303 DUF2408: Protein of u 61.6 60 0.0013 27.5 8.1 100 26-129 13-124 (134)
22 PF09755 DUF2046: Uncharacteri 57.0 2E+02 0.0043 28.2 13.3 51 4-54 3-54 (310)
23 PF07106 TBPIP: Tat binding pr 55.7 38 0.00081 28.7 6.0 90 21-113 73-162 (169)
24 cd07624 BAR_SNX7_30 The Bin/Am 52.3 1.6E+02 0.0035 25.8 12.9 81 21-103 15-110 (200)
25 PF09787 Golgin_A5: Golgin sub 52.2 2.6E+02 0.0057 28.1 12.3 88 24-113 120-224 (511)
26 KOG0018|consensus 51.0 1.7E+02 0.0036 33.3 11.1 101 20-134 402-502 (1141)
27 PHA03332 membrane glycoprotein 50.3 2.5E+02 0.0053 32.2 12.2 73 41-122 909-981 (1328)
28 PF01920 Prefoldin_2: Prefoldi 49.9 1.1E+02 0.0024 23.1 7.2 97 26-134 4-100 (106)
29 TIGR00606 rad50 rad50. This fa 49.8 3.3E+02 0.0071 30.6 13.3 17 118-134 882-898 (1311)
30 KOG4787|consensus 47.5 1.5E+02 0.0031 32.1 9.7 105 27-134 437-546 (852)
31 KOG1029|consensus 46.5 3.4E+02 0.0075 30.4 12.4 80 23-102 447-555 (1118)
32 COG1382 GimC Prefoldin, chaper 46.1 1.9E+02 0.0041 24.6 11.3 92 30-134 16-108 (119)
33 KOG3208|consensus 45.6 2E+02 0.0044 27.1 9.4 119 20-141 5-137 (231)
34 PF08317 Spc7: Spc7 kinetochor 45.4 2.7E+02 0.0059 26.3 13.2 40 22-61 165-204 (325)
35 PF14073 Cep57_CLD: Centrosome 45.0 2.1E+02 0.0045 26.0 9.1 16 25-40 2-17 (178)
36 KOG0239|consensus 44.1 3.2E+02 0.0069 29.1 11.7 93 32-134 225-317 (670)
37 PF09731 Mitofilin: Mitochondr 43.2 3.2E+02 0.007 27.4 11.1 17 80-96 287-303 (582)
38 PF11887 DUF3407: Protein of u 42.7 1.9E+02 0.0042 26.7 8.9 91 34-130 13-104 (267)
39 PF10168 Nup88: Nuclear pore c 42.4 2.2E+02 0.0048 30.4 10.3 37 22-58 588-624 (717)
40 KOG2483|consensus 41.6 3E+02 0.0065 25.7 10.3 44 87-130 96-139 (232)
41 PF14712 Snapin_Pallidin: Snap 41.1 1.6E+02 0.0034 22.4 9.9 38 25-62 12-49 (92)
42 PF10224 DUF2205: Predicted co 41.0 88 0.0019 24.8 5.5 43 20-62 23-65 (80)
43 PF04156 IncA: IncA protein; 40.4 2.3E+02 0.005 24.0 12.1 29 34-62 81-109 (191)
44 cd07623 BAR_SNX1_2 The Bin/Amp 40.0 2.7E+02 0.0059 24.8 13.7 51 26-76 18-75 (224)
45 cd07596 BAR_SNX The Bin/Amphip 39.5 2.2E+02 0.0048 23.6 13.6 40 23-62 7-46 (218)
46 PF10234 Cluap1: Clusterin-ass 39.2 2.7E+02 0.0058 26.6 9.4 28 31-58 111-141 (267)
47 cd07633 BAR_OPHN1 The Bin/Amph 38.4 2.5E+02 0.0054 26.0 8.7 50 69-118 72-122 (207)
48 PF08372 PRT_C: Plant phosphor 37.0 1.7E+02 0.0038 25.7 7.3 32 32-76 57-88 (156)
49 COG5185 HEC1 Protein involved 36.9 2.1E+02 0.0046 30.1 8.8 75 39-117 262-340 (622)
50 PF08514 STAG: STAG domain ; 36.7 1.8E+02 0.0039 23.9 7.0 59 71-132 57-115 (118)
51 PF09325 Vps5: Vps5 C terminal 36.6 2.8E+02 0.006 23.9 14.1 104 23-134 27-145 (236)
52 PF11559 ADIP: Afadin- and alp 36.5 2.5E+02 0.0053 23.3 10.4 38 23-60 55-92 (151)
53 PF00804 Syntaxin: Syntaxin; 36.3 1.7E+02 0.0038 21.4 6.5 27 22-48 9-35 (103)
54 cd01040 globin Globins are hem 35.7 1.5E+02 0.0032 22.7 6.1 70 46-115 57-136 (140)
55 COG3027 zapA Cell division pro 35.6 2.5E+02 0.0054 23.1 9.2 30 77-106 43-72 (105)
56 PF12848 ABC_tran_2: ABC trans 35.3 1.2E+02 0.0025 22.4 5.2 38 94-131 15-52 (85)
57 smart00502 BBC B-Box C-termina 34.4 2E+02 0.0044 21.7 12.4 45 90-134 44-89 (127)
58 PF10392 COG5: Golgi transport 34.0 2E+02 0.0044 23.7 6.9 59 39-102 70-130 (132)
59 PF10337 DUF2422: Protein of u 33.9 4.5E+02 0.0097 25.8 10.3 25 77-101 380-404 (459)
60 PRK09343 prefoldin subunit bet 33.1 2.8E+02 0.006 22.8 13.1 98 31-133 18-115 (121)
61 KOG2070|consensus 33.1 97 0.0021 32.7 5.8 44 90-133 617-660 (661)
62 PF03915 AIP3: Actin interacti 33.0 5.3E+02 0.012 26.1 11.4 70 39-117 211-285 (424)
63 cd01067 globin_like superfamil 32.5 1E+02 0.0022 24.0 4.8 35 82-116 82-116 (117)
64 PF05659 RPW8: Arabidopsis bro 32.4 2.3E+02 0.0049 24.3 7.1 67 50-126 8-75 (147)
65 PF06179 Med22: Surfeit locus 31.9 2.6E+02 0.0057 22.2 7.3 31 79-109 36-66 (109)
66 PRK14126 cell division protein 31.5 2.3E+02 0.0049 22.2 6.5 23 79-101 49-71 (85)
67 KOG0995|consensus 31.4 6.7E+02 0.014 26.7 12.3 92 39-134 226-325 (581)
68 PF10493 Rod_C: Rough deal pro 31.3 1.1E+02 0.0024 31.5 5.9 42 89-134 122-163 (551)
69 PF12709 Kinetocho_Slk19: Cent 31.3 84 0.0018 25.5 4.1 49 80-134 25-73 (87)
70 TIGR00293 prefoldin, archaeal 30.9 2.8E+02 0.006 22.1 9.1 102 25-127 4-124 (126)
71 PTZ00398 phosphoenolpyruvate c 30.9 5E+02 0.011 29.0 11.0 95 39-133 43-166 (974)
72 PF09766 FimP: Fms-interacting 30.9 59 0.0013 31.4 3.7 25 109-133 93-117 (355)
73 COG2433 Uncharacterized conser 30.8 7.1E+02 0.015 26.9 12.5 91 23-130 418-508 (652)
74 PF06419 COG6: Conserved oligo 30.8 4E+02 0.0086 27.6 9.8 9 161-169 126-134 (618)
75 TIGR02231 conserved hypothetic 30.5 2.9E+02 0.0064 27.5 8.6 34 29-62 73-106 (525)
76 KOG4643|consensus 30.2 7.4E+02 0.016 28.5 12.0 111 20-134 294-432 (1195)
77 PF15066 CAGE1: Cancer-associa 29.9 6.7E+02 0.015 26.3 12.3 59 68-132 460-525 (527)
78 PF03670 UPF0184: Uncharacteri 29.9 1.9E+02 0.0041 23.3 5.8 42 85-126 29-74 (83)
79 KOG3003|consensus 29.7 4.6E+02 0.01 24.9 9.2 67 52-129 92-160 (236)
80 KOG3915|consensus 29.0 4.9E+02 0.011 27.6 9.9 38 93-130 546-583 (641)
81 PF05667 DUF812: Protein of un 28.3 5.2E+02 0.011 27.1 10.2 35 26-60 327-361 (594)
82 PF11157 DUF2937: Protein of u 27.7 3E+02 0.0064 24.1 7.2 72 39-130 25-98 (167)
83 PRK10972 Z-ring-associated pro 27.6 2.6E+02 0.0057 23.2 6.5 42 51-101 25-69 (109)
84 PF00261 Tropomyosin: Tropomyo 27.4 2.9E+02 0.0062 24.9 7.3 41 22-62 171-211 (237)
85 KOG0251|consensus 27.4 5.7E+02 0.012 26.4 10.1 84 43-126 166-256 (491)
86 PRK03947 prefoldin subunit alp 27.2 1.4E+02 0.0031 24.4 4.9 100 28-133 7-131 (140)
87 PF15079 DUF4546: Domain of un 27.2 1.4E+02 0.003 27.5 5.1 38 21-58 52-89 (205)
88 PF10186 Atg14: UV radiation r 26.5 4.5E+02 0.0097 23.2 12.0 18 184-202 217-234 (302)
89 PF08385 DHC_N1: Dynein heavy 25.5 6.4E+02 0.014 24.6 12.4 87 46-133 98-204 (579)
90 cd07622 BAR_SNX4 The Bin/Amphi 25.5 4.9E+02 0.011 23.2 13.1 93 22-116 16-126 (201)
91 smart00150 SPEC Spectrin repea 25.4 2.5E+02 0.0054 19.8 6.6 17 106-122 84-100 (101)
92 PF14817 HAUS5: HAUS augmin-li 25.4 8.5E+02 0.018 26.0 14.3 93 40-134 321-420 (632)
93 PF07888 CALCOCO1: Calcium bin 25.0 8.3E+02 0.018 25.8 13.8 14 120-133 262-275 (546)
94 PF07651 ANTH: ANTH domain; I 24.9 4.7E+02 0.01 23.3 8.2 90 44-134 156-252 (280)
95 KOG2923|consensus 24.8 30 0.00066 26.9 0.5 11 193-203 46-56 (67)
96 PF15066 CAGE1: Cancer-associa 24.7 8.4E+02 0.018 25.7 11.6 112 23-134 313-442 (527)
97 COG5508 Uncharacterized conser 24.6 34 0.00075 27.7 0.8 13 178-190 62-74 (84)
98 cd07631 BAR_APPL1 The Bin/Amph 24.4 5.5E+02 0.012 23.9 8.6 73 23-103 61-134 (215)
99 PF11500 Cut12: Spindle pole b 23.9 2.5E+02 0.0053 24.8 6.0 32 105-136 107-138 (152)
100 PRK01203 prefoldin subunit alp 23.8 3.1E+02 0.0067 23.6 6.4 38 95-132 86-123 (130)
101 PF09602 PhaP_Bmeg: Polyhydrox 23.4 5.5E+02 0.012 23.1 12.2 30 29-60 31-60 (165)
102 TIGR03185 DNA_S_dndD DNA sulfu 23.4 8.3E+02 0.018 25.2 11.4 58 77-134 229-286 (650)
103 PF11239 DUF3040: Protein of u 23.0 65 0.0014 24.6 2.1 15 114-129 4-18 (82)
104 PF10211 Ax_dynein_light: Axon 22.8 5.4E+02 0.012 22.8 11.0 23 18-40 28-50 (189)
105 PF04332 DUF475: Protein of un 22.5 55 0.0012 31.7 1.8 21 88-113 3-23 (294)
106 KOG2307|consensus 22.0 5.8E+02 0.013 27.6 9.1 123 25-157 494-656 (705)
107 PF09755 DUF2046: Uncharacteri 22.0 5.3E+02 0.011 25.3 8.3 24 99-122 264-287 (310)
108 KOG0996|consensus 21.9 9.2E+02 0.02 28.1 11.0 100 29-133 860-965 (1293)
109 PRK13837 two-component VirA-li 21.6 9.5E+02 0.02 25.2 11.0 89 43-135 186-288 (828)
110 KOG0982|consensus 21.6 9.4E+02 0.02 25.1 10.5 37 26-62 303-343 (502)
111 PF02114 Phosducin: Phosducin; 21.2 33 0.00071 32.0 0.1 38 156-203 130-167 (265)
112 PF11538 Snurportin1: Snurport 21.1 40 0.00086 23.8 0.5 19 101-119 13-31 (40)
113 PF00170 bZIP_1: bZIP transcri 21.0 3.3E+02 0.0071 19.6 5.5 35 28-62 27-61 (64)
No 1
>KOG1739|consensus
Probab=99.44 E-value=2.5e-14 Score=140.96 Aligned_cols=137 Identities=17% Similarity=0.275 Sum_probs=111.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHhHHHHHHHHH----------------hhhhcCCCchhh--------------------hh
Q psy3495 29 IKTLSVNLEQLQSYNEIINKHGAALLRTLS----------------ELESCDNPQELQ--------------------CQ 72 (266)
Q Consensus 29 lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~----------------ELEs~~~p~e~~--------------------~k 72 (266)
.-.|++||.+++|++|++.+|...|||+++ +|-....|.... .+
T Consensus 154 npSlrekLAeneq~sD~~esqkl~lqK~~da~AyrtmckdQmtsIerllEqggpsciv~~atilSvkathlal~~~~~~~ 233 (611)
T KOG1739|consen 154 NPSLREKLAENETFSDILESQKLTLQKYFDACAYRTMCKDQMTSIERLLEQGGPSCIVDGATILSVKATHLALFPHVTPK 233 (611)
T ss_pred CccHHHHHhhcccccchhHHHHHHHHHHHHHHHHHhhhHhhhHHHHHHHhcCCCccccCCceeeeecccceeeecccccc
Confidence 347999999999999999999999999998 111111122211 33
Q ss_pred hhhh--hhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCC
Q psy3495 73 IKEI--NERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCSTGPPVHDSGPRLGGLPR 150 (266)
Q Consensus 73 ik~V--~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~~~p~~~g~~~~~~~~e 150 (266)
+..| ++.+|+||.||++++.+..||++++...+..|+++|..|.+++.+-++...-+....-..+..+|++ +.+
T Consensus 234 ~~~id~k~evIt~~attsg~l~t~~h~ie~~~ks~~s~~~rLe~~~ek~r~sed~sk~~~~e~~kr~~~g~~d----~~e 309 (611)
T KOG1739|consen 234 INGIDFKGEVITFKATTSGILATLSHCIELMVKSEDSWQKRLEKETEKKRRSEDASKNAMTELKKRSHFGGPD----YEE 309 (611)
T ss_pred eeeeccccceeecccccccccccchhchhheeecchHhHhHHHHHHHHHHhhhhhcccchhhhhhcccCCCCc----ccc
Confidence 4455 7899999999999999999999999999999999999999999999988766655555667777754 479
Q ss_pred CCCCcccCcccccccccccc
Q psy3495 151 EEEAEDEEDSVFYDANEVMT 170 (266)
Q Consensus 151 gp~SdedDD~EFFDAvE~~~ 170 (266)
||+|.+++| |||||+|+++
T Consensus 310 ~~~sll~~d-e~~dAvet~l 328 (611)
T KOG1739|consen 310 GPNSLINED-EFFDAVETAL 328 (611)
T ss_pred Cccccchhh-hhccchhhhH
Confidence 999999998 9999999875
No 2
>KOG1737|consensus
Probab=99.34 E-value=1.5e-12 Score=133.78 Aligned_cols=140 Identities=21% Similarity=0.204 Sum_probs=119.9
Q ss_pred HHHHHhhhhHHHHHHHHHHhHHHHHHHHH-hhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhh
Q psy3495 30 KTLSVNLEQLQSYNEIINKHGAALLRTLS-ELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKW 108 (266)
Q Consensus 30 R~LseKL~DL~Tc~DLI~KhG~aLQRsL~-ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kW 108 (266)
++...+|.+|.+|.+++.+++..++|.|. +++....+.....+++...+|+.+|++++.+|++|+.+|..++.++..+|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~s~s~~k~~~~~e~~~~k~~~s~~s~~a~~~~e~~~~s~~~~~ 281 (799)
T KOG1737|consen 202 ETREINVDVLRLLSSLPNLTGQLLLRELNALLEDKKEQSSSKSKLQERTERIALKVLTSLASVFAECDDEAELLSQSRIE 281 (799)
T ss_pred cchhhhhhhhhhccccccchhhhhhhhhccccccccccccchhhhHHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhHhh
Confidence 88999999999999999999999999997 77777777778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCC--------------CCC-CCCCCCCCCCCCCCcccCcccccccccccc
Q psy3495 109 QRMLQHERDQRLKLEELLEQMARCSTGPP--------------VHD-SGPRLGGLPREEEAEDEEDSVFYDANEVMT 170 (266)
Q Consensus 109 qK~Lq~ErEQR~rLEE~lEqLAKQh~~~p--------------~~~-g~~~~~~~~egp~SdedDD~EFFDAvE~~~ 170 (266)
|+.+.++.+||++|++.++||++|+.... ... ... ....+++..+..+|++|||||.+...
T Consensus 282 s~~s~~~~~q~~~l~~~l~~le~q~~~le~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~e~~da~s~~s 357 (799)
T KOG1737|consen 282 SDASHSESEQRIRLQEALSALENQNTDLEVALRRAHAAQAALDLSKVTRL-SLLHEEESFSESDELTEQFDAESSLS 357 (799)
T ss_pred hhhhcchhhhhhhhhhHHHHHHhhhhhHHHHHhHhhhhhhccCccccccc-cccccccccccccccccccccccccc
Confidence 99999999999999999999999975210 000 001 12224677778888899999999753
No 3
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=89.21 E-value=7.6 Score=37.84 Aligned_cols=116 Identities=14% Similarity=0.208 Sum_probs=77.9
Q ss_pred ccCcHHHHHHHHHHHHHhhhhHHHHHHH----HHHhHHHHHHHHH-------hhhhcCC-CchhhhhhhhhhhhhhHHHH
Q psy3495 18 EVDGEVKLENIIKTLSVNLEQLQSYNEI----INKHGAALLRTLS-------ELESCDN-PQELQCQIKEINERATLFRI 85 (266)
Q Consensus 18 ~~~~~~el~~~lR~LseKL~DL~Tc~DL----I~KhG~aLQRsL~-------ELEs~~~-p~e~~~kik~V~ERATLFKI 85 (266)
-..|..|+..+++.|.+.+.++.....- |..|.+.+....+ .|..... -......++.+..+...|+.
T Consensus 246 l~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~~~ 325 (412)
T PF04108_consen 246 LENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFHDFEERWEEEKE 325 (412)
T ss_pred HHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888886665444 5555554444433 3333111 01122344555778888888
Q ss_pred hHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 86 TTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 86 TS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
+..+-+....++..+-.+-...... |-.|..||+.-++.++.+.++.+
T Consensus 326 ~i~~~~~~l~~L~~~Y~~F~~aY~~-LL~Ev~RRr~~~~k~~~i~~~~~ 373 (412)
T PF04108_consen 326 SIQAYIDELEQLCEFYEGFLSAYDS-LLLEVERRRAVRDKMKKIIREAN 373 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877777777666677777 77799999988887777666664
No 4
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.79 E-value=3.7 Score=43.19 Aligned_cols=111 Identities=17% Similarity=0.236 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHh-hhhHHHHHHHHHHhHHHHHHHHH----hhhhcCC-CchhhhhhhhhhhhhhHHHHhHHHHHHHHHHH
Q psy3495 24 KLENIIKTLSVN-LEQLQSYNEIINKHGAALLRTLS----ELESCDN-PQELQCQIKEINERATLFRITTNAMINSCGKY 97 (266)
Q Consensus 24 el~~~lR~LseK-L~DL~Tc~DLI~KhG~aLQRsL~----ELEs~~~-p~e~~~kik~V~ERATLFKITS~AMInAc~ef 97 (266)
-|..+.+.|++. +..+...++-|.+|+..|++-.. +|..+.. -..+..+-..+.||.---+-....+.+-|...
T Consensus 540 lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 540 LLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888888 78899999999999998887666 3332110 00011111122223222223344444445555
Q ss_pred HHHHH-------hchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 98 LEIAQ-------TQGGKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 98 L~La~-------q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
+.++. .-+++|.+-|+.=.++=..|...++++.++++
T Consensus 620 l~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 620 LQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 34789999999888888888888888887776
No 5
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=85.45 E-value=9.6 Score=30.02 Aligned_cols=106 Identities=21% Similarity=0.191 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchh-------------------hhhhhhhhhhhhHHH
Q psy3495 24 KLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQEL-------------------QCQIKEINERATLFR 84 (266)
Q Consensus 24 el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~-------------------~~kik~V~ERATLFK 84 (266)
++....+.|..++..|++-..-+..+...++.+.+.|+........ .+++-.-=|.-....
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve 82 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVE 82 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEE
Confidence 4566778899999999999999999999999999988774321110 111111112223344
Q ss_pred HhHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3495 85 ITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQM 129 (266)
Q Consensus 85 ITS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqL 129 (266)
.+..-.+.-+..=++.++.+-++|.+.+..=..+-..++..+.++
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 83 KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556778888888888888888888887777777777766665
No 6
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=84.29 E-value=19 Score=30.09 Aligned_cols=89 Identities=18% Similarity=0.263 Sum_probs=47.9
Q ss_pred HHHHhhhhHHHHHHHHHHhHHHH-HHHHHh--hhhcCCCchhhhhhhhhhhhhhHHHHh---HHHHHHHHHHHHHHHHhc
Q psy3495 31 TLSVNLEQLQSYNEIINKHGAAL-LRTLSE--LESCDNPQELQCQIKEINERATLFRIT---TNAMINSCGKYLEIAQTQ 104 (266)
Q Consensus 31 ~LseKL~DL~Tc~DLI~KhG~aL-QRsL~E--LEs~~~p~e~~~kik~V~ERATLFKIT---S~AMInAc~efL~La~q~ 104 (266)
+++.||. +.|.|||.--|.-+ |--|.. +.+....+-...-.+.+++++..|-.- +--.+|....||+-+..-
T Consensus 4 ~~~nkLt--~~fdDILk~s~~m~~qeqik~~ql~s~vi~G~n~~l~k~L~eki~~Fh~ILDd~~~~l~~sk~~v~~m~e~ 81 (105)
T PF11214_consen 4 NLQNKLT--QCFDDILKVSGEMFVQEQIKNNQLQSNVITGFNNQLQKQLSEKIHKFHSILDDTESKLNDSKWYVDTMVEL 81 (105)
T ss_pred hHHhHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556655 45566655444433 244442 233223333334467788888888642 334566777787766543
Q ss_pred hhhh-HHHHHHHHHHHHH
Q psy3495 105 GGKW-QRMLQHERDQRLK 121 (266)
Q Consensus 105 e~kW-qK~Lq~ErEQR~r 121 (266)
..+- ..++..|.|+|++
T Consensus 82 ~q~~ee~K~keE~E~~rk 99 (105)
T PF11214_consen 82 KQKQEEEKIKEEEERKRK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3331 1136666666666
No 7
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.70 E-value=29 Score=31.22 Aligned_cols=70 Identities=24% Similarity=0.345 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHH
Q psy3495 21 GEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLE 99 (266)
Q Consensus 21 ~~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~ 99 (266)
.+.++..-++.|...++.|+.+++-+.+..++++.-+++|+. -.+.+..++.+...+ -.-|++.+..||.
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~------qi~~~~~~~~~l~p~---m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ------QIEQIEETRQELVPL---MEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 344556677888888888999999988888888888888865 112223333444444 3458888898888
No 8
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=76.56 E-value=61 Score=29.58 Aligned_cols=68 Identities=12% Similarity=0.208 Sum_probs=42.9
Q ss_pred HHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhH
Q psy3495 33 SVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQ 109 (266)
Q Consensus 33 seKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kWq 109 (266)
...+..+.+=+|-+..|.+++.++|++|-. +....++-+.-||.-=..+-+.+.+|+.-+.+.+.|.+
T Consensus 68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~---------ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~ 135 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNSLEKSFSDLHK---------RYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQ 135 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHHHHHH---------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555677778888888888888887643 44555555556665555555566666666655554444
No 9
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=76.32 E-value=47 Score=28.18 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHH
Q psy3495 21 GEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYL 98 (266)
Q Consensus 21 ~~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL 98 (266)
+-.+.+..+..|..++.+++....-..++...+++.+..+.. -.+.+.++...|+-.-..|..-+.+..
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRE---------LLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777777777777766666665432 334556666666655555555544444
No 10
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=73.56 E-value=49 Score=27.09 Aligned_cols=109 Identities=18% Similarity=0.135 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhh------------hhhh-------HHHH
Q psy3495 25 LENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEIN------------ERAT-------LFRI 85 (266)
Q Consensus 25 l~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~------------ERAT-------LFKI 85 (266)
+..-...|+..+..|..-..-|.....++.++++.|+.+....+...-+-.|. ++++ +...
T Consensus 11 l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE~ 90 (140)
T PRK03947 11 LAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEK 90 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEEe
Confidence 33445556666666666666666666666666666655432111111111111 1111 1112
Q ss_pred hHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3495 86 TTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCS 133 (266)
Q Consensus 86 TS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh 133 (266)
+-.-.+.-+..=++.+..+-++|++.+..=+++-..+++.++++..+.
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556666666777888888999999988888888888888886653
No 11
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=72.17 E-value=88 Score=29.51 Aligned_cols=104 Identities=17% Similarity=0.148 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCC------------Cch----hhhhhhhhhhhhhHHHHhHHHH
Q psy3495 27 NIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDN------------PQE----LQCQIKEINERATLFRITTNAM 90 (266)
Q Consensus 27 ~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~------------p~e----~~~kik~V~ERATLFKITS~AM 90 (266)
.....|...+..|+.-...|.++...|+..+..|..... +.+ -...+..++.+..-. .+-
T Consensus 149 gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~----~~~ 224 (325)
T PF08317_consen 149 GLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQ----KEE 224 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHH----HHH
Confidence 344556666666666666666666666666554433100 000 012222333322222 223
Q ss_pred HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 91 INSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 91 InAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
|.+.+.=+.=.+.+-..|+-.++.=.+++..+++.|.++-+...
T Consensus 225 i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 225 IEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455566666666676666777777777777766554
No 12
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=72.00 E-value=67 Score=28.01 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=73.6
Q ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhh------cCCCchhhhhhhhhhhhhhHHHH--------h
Q psy3495 21 GEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELES------CDNPQELQCQIKEINERATLFRI--------T 86 (266)
Q Consensus 21 ~~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs------~~~p~e~~~kik~V~ERATLFKI--------T 86 (266)
.-.+++..+.+|.++|..|.....=|.|+...|-..+.++-. ...+.+++..++.+.+...-|-. +
T Consensus 5 ~F~ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l~~~~ 84 (185)
T cd07628 5 EFLEIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVLNKYT 84 (185)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999999999999999999888887775543 11122366677766543333321 2
Q ss_pred HHHHHHHHHHHHHHHHh----chhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy3495 87 TNAMINSCGKYLEIAQT----QGGKWQRMLQHERDQRLKLEELLEQMAR 131 (266)
Q Consensus 87 S~AMInAc~efL~La~q----~e~kWqK~Lq~ErEQR~rLEE~lEqLAK 131 (266)
....+-.+.+|+.++.. -..|++|.+++|.-+-..|++.+|+..+
T Consensus 85 ~~~f~~~Lkd~~~y~~s~k~~lk~R~~kq~d~e~l~e~ll~~~ve~a~~ 133 (185)
T cd07628 85 DENYLTSLKDLLHYILSLKNLIKLRDQKQLDYEELSDYLLTDEVENAKE 133 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 23345566666666653 3567788888887776666666665444
No 13
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=68.48 E-value=50 Score=25.15 Aligned_cols=87 Identities=15% Similarity=0.219 Sum_probs=48.9
Q ss_pred HHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhh-HHHHhHHHHHHHHHHH------HHHHHhchhhhHHHHHHHHHH
Q psy3495 46 INKHGAALLRTLSELESCDNPQELQCQIKEINERAT-LFRITTNAMINSCGKY------LEIAQTQGGKWQRMLQHERDQ 118 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERAT-LFKITS~AMInAc~ef------L~La~q~e~kWqK~Lq~ErEQ 118 (266)
|..++..|+|.+.-|...++..++-+++..+.+++. +++.|+. .|..+..+ -.....+.+|..+-+..-..+
T Consensus 8 in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~-~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~ 86 (102)
T PF14523_consen 8 INQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISE-LLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQE 86 (102)
T ss_dssp HHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 566788899999988888888888888877755444 4444433 33333333 112223344444555555556
Q ss_pred HHHHHHHHHHHHhhh
Q psy3495 119 RLKLEELLEQMARCS 133 (266)
Q Consensus 119 R~rLEE~lEqLAKQh 133 (266)
-.+++..+...-+++
T Consensus 87 fq~~q~~~~~~~k~~ 101 (102)
T PF14523_consen 87 FQKAQRRYAEKEKQT 101 (102)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc
Confidence 666666666555543
No 14
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=65.37 E-value=69 Score=25.60 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHh
Q psy3495 24 KLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQT 103 (266)
Q Consensus 24 el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q 103 (266)
++......++.++..+.+=...+..+......++.+|+.... ....++.|.. .+.+-+-.-++..+.+=++.+..
T Consensus 7 ~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~---d~~vyk~VG~--vlv~~~~~e~~~~l~~r~e~ie~ 81 (110)
T TIGR02338 7 NQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPD---DTPVYKSVGN--LLVKTDKEEAIQELKEKKETLEL 81 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---cchhHHHhch--hhheecHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777888888888888877542 2334555543 55566666777777777777766
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHH
Q psy3495 104 QGGKWQRMLQHERDQRLKLEELLEQ 128 (266)
Q Consensus 104 ~e~kWqK~Lq~ErEQR~rLEE~lEq 128 (266)
.-++..+.+.+=+++=..+|..+.+
T Consensus 82 ~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 82 RVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555444444444444433
No 15
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.35 E-value=1.3e+02 Score=28.23 Aligned_cols=112 Identities=15% Similarity=0.164 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhh-----cCCCchhhhhhhhhhh--------hhhHHHHhHH
Q psy3495 22 EVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELES-----CDNPQELQCQIKEINE--------RATLFRITTN 88 (266)
Q Consensus 22 ~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs-----~~~p~e~~~kik~V~E--------RATLFKITS~ 88 (266)
=.+++..+-+|.+||.-|....-=|.|-...|..-+.|+-. ...-.++.+.++.+.. =..+-+-++-
T Consensus 53 F~e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~ 132 (240)
T cd07667 53 FAAIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDMTE 132 (240)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34566677888888888777666665555444443332221 0011234445554422 2223333445
Q ss_pred HHHHHHHHHHHHHHhc----hhhhHHHHHHH---------HHHHHHHHHHHHHHHhhh
Q psy3495 89 AMINSCGKYLEIAQTQ----GGKWQRMLQHE---------RDQRLKLEELLEQMARCS 133 (266)
Q Consensus 89 AMInAc~efL~La~q~----e~kWqK~Lq~E---------rEQR~rLEE~lEqLAKQh 133 (266)
..+-.+.+|+..+.+. -.+|||.+++| |+++.+|+..+|.+-+-.
T Consensus 133 ~yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~v 190 (240)
T cd07667 133 DFLPVLREYILYSESMKNVLKKRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRV 190 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777877777654 46888888888 467777877777775544
No 16
>KOG1842|consensus
Probab=64.12 E-value=44 Score=34.42 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q psy3495 92 NSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCSTGPPVHDS 141 (266)
Q Consensus 92 nAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~~~p~~~g 141 (266)
=+.++|-+|...+..+-.+.+..|+..-..-.+.++|+++|++...+.|+
T Consensus 373 Pt~e~~~~l~~krk~~te~d~a~e~r~a~~~~~rl~q~q~q~~s~~~~ge 422 (505)
T KOG1842|consen 373 PTAEECYHLQVKRKEETESDFAREGREAEKKKERLSQLQKQQSSVSSFGE 422 (505)
T ss_pred CchHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHhHHHHHHhccccCCCCC
Confidence 37788888887666555555554443333334445699999976544444
No 17
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=63.98 E-value=71 Score=25.64 Aligned_cols=106 Identities=21% Similarity=0.197 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhh------------hhhh-------hHHH
Q psy3495 24 KLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEI------------NERA-------TLFR 84 (266)
Q Consensus 24 el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V------------~ERA-------TLFK 84 (266)
.+...+..|...+..|+.-.+-|......++.+++.|+...........+-.+ ..+. ..-.
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE 82 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVE 82 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEE
Confidence 45566777888888888888888888888988888777653210000000000 0000 0111
Q ss_pred HhHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3495 85 ITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQM 129 (266)
Q Consensus 85 ITS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqL 129 (266)
.+..-.+..|.+=++.++.+-++|++.+..=+++-..+++.+.++
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 83 KDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233345567777778888888888888887777777776666654
No 18
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=63.89 E-value=1.7e+02 Score=29.80 Aligned_cols=70 Identities=13% Similarity=0.249 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhc-----CCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHH
Q psy3495 39 LQSYNEIINKHGAALLRTLSELESC-----DNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQ 113 (266)
Q Consensus 39 L~Tc~DLI~KhG~aLQRsL~ELEs~-----~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq 113 (266)
|.+-.|.|..+.+.||..+.+|-.. ..|.. .+++.|...+.. ...=|...++| +...-.-|+|+|+
T Consensus 215 L~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~--~qLe~v~kdi~~----a~keL~~m~~~---i~~eKP~WkKiWE 285 (426)
T smart00806 215 LSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSK--KQLETVQKELET----ARKELKKMEEY---IDIEKPIWKKIWE 285 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHH----HHHHHHHHHHH---HhhcChHHHHHHH
Confidence 4444566677788888888877652 12222 344445333221 22334445555 4566778999999
Q ss_pred HHHH
Q psy3495 114 HERD 117 (266)
Q Consensus 114 ~ErE 117 (266)
.|-+
T Consensus 286 ~EL~ 289 (426)
T smart00806 286 AELD 289 (426)
T ss_pred HHHH
Confidence 9977
No 19
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=63.35 E-value=73 Score=25.15 Aligned_cols=100 Identities=14% Similarity=0.117 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhc
Q psy3495 25 LENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQ 104 (266)
Q Consensus 25 l~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~ 104 (266)
+......|+.++..|..=+..|.-+......++.+|+.+.. .....+.|.+ .+++.+-.-++..+.+-++.+...
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~---d~~vy~~VG~--vfv~~~~~ea~~~Le~~~e~le~~ 78 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLAD---DAEVYKLVGN--VLVKQEKEEARTELKERLETIELR 78 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---cchHHHHhhh--HHhhccHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777888888888888888887542 1223345544 667777788888888888888777
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3495 105 GGKWQRMLQHERDQRLKLEELLEQM 129 (266)
Q Consensus 105 e~kWqK~Lq~ErEQR~rLEE~lEqL 129 (266)
-++..+.+..=..+=..++..++.|
T Consensus 79 i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 79 IKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766555555555555444
No 20
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=63.26 E-value=1e+02 Score=26.88 Aligned_cols=93 Identities=25% Similarity=0.272 Sum_probs=55.0
Q ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHH-HHHHHH
Q psy3495 20 DGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMIN-SCGKYL 98 (266)
Q Consensus 20 ~~~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMIn-Ac~efL 98 (266)
+..++|+-+.+...+-|.+-+++. .+|||-|+.|..-. -.++-| ---|--+.-+++ -|++=
T Consensus 13 nrInelQQaKKk~~EELgEa~~l~-------eaL~~ELDsL~~Ek------vhLeei----lnkKqe~l~iLqlhcqek- 74 (134)
T PF15233_consen 13 NRINELQQAKKKSSEELGEAQALW-------EALQRELDSLNGEK------VHLEEI----LNKKQETLRILQLHCQEK- 74 (134)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHhhhH------HHHHHH----HHHHHHHHHHHHHHHHHH-
Confidence 456777777788888877777654 56777777664300 011111 111111212222 12221
Q ss_pred HHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 99 EIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 99 ~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
..+..|+-.+..|-.+|...|+++|.|..||-
T Consensus 75 ----e~eaqrq~~~~~eck~R~~fe~qLE~lm~qHK 106 (134)
T PF15233_consen 75 ----ESEAQRQQTLLQECKLRLDFEEQLEDLMGQHK 106 (134)
T ss_pred ----HHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Confidence 33445666777778899999999999999996
No 21
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=61.61 E-value=60 Score=27.51 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHH------HHhHHHHHHHHHhhhhcC-CCchhhhhhhhhh-hhhhHH-HHhHHHHHHHHHH
Q psy3495 26 ENIIKTLSVNLEQLQSYNEII------NKHGAALLRTLSELESCD-NPQELQCQIKEIN-ERATLF-RITTNAMINSCGK 96 (266)
Q Consensus 26 ~~~lR~LseKL~DL~Tc~DLI------~KhG~aLQRsL~ELEs~~-~p~e~~~kik~V~-ERATLF-KITS~AMInAc~e 96 (266)
...+-+++--|..+.|-.... ......||.-|.+++..+ ..+ |+.... +...-= -..-+++|.-|.+
T Consensus 13 ~ekLisIrR~L~~~~t~~k~~~~~~~~~~el~~lq~qL~eIe~~R~~DG----KF~~~~~g~~~~~gQ~~l~~LLd~C~~ 88 (134)
T PF10303_consen 13 YEKLISIRRSLLSLNTRSKFSDSSEESSSELKPLQEQLKEIESMRDVDG----KFVSPDTGEVPPGGQAVLNGLLDDCFD 88 (134)
T ss_pred HHHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHhccCCC----CeeCCCCCCCCcchHHHHHHHHHHHHH
Confidence 334445555555566655555 777788888899999877 333 333332 222222 3346899999999
Q ss_pred HHHHHHhchh---hhHHHHHHHHHHHHHHHHHHHHH
Q psy3495 97 YLEIAQTQGG---KWQRMLQHERDQRLKLEELLEQM 129 (266)
Q Consensus 97 fL~La~q~e~---kWqK~Lq~ErEQR~rLEE~lEqL 129 (266)
+++.+..+.. +--..|+---+|-..+--++|.|
T Consensus 89 li~dl~~~~~~~~~~~~~l~~iY~~L~~ik~~LE~L 124 (134)
T PF10303_consen 89 LIEDLLERKGEEIEVDPSLQPIYDQLIDIKNTLENL 124 (134)
T ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHHHHHHhh
Confidence 9999988777 66666666666766666666666
No 22
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=57.04 E-value=2e+02 Score=28.16 Aligned_cols=51 Identities=16% Similarity=-0.006 Sum_probs=28.9
Q ss_pred cccccCCCCcc-cccccCcHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH
Q psy3495 4 ITIFSDFVSDE-EDFEVDGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALL 54 (266)
Q Consensus 4 ~~~esd~~~d~-~~~~~~~~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQ 54 (266)
-.+|||.|+-. .+.++.....+...+-.|..+-.-|..--+........|+
T Consensus 3 s~sesd~d~~~~~~~S~~t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~ 54 (310)
T PF09755_consen 3 SASESDTDGAGMTSSSSATREQLRKRIESLQQENRVLKRELETEKARCKHLQ 54 (310)
T ss_pred ccccccccCCCCCCCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34566655543 3556666677777776666665555554444444444444
No 23
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=55.73 E-value=38 Score=28.71 Aligned_cols=90 Identities=20% Similarity=0.255 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHH
Q psy3495 21 GEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEI 100 (266)
Q Consensus 21 ~~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~L 100 (266)
...++..-+..|+++|.+|..-..-+......|...+..-+....=..+...+..+..|...+|-.+.- |. .+=+.-
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~-vs--~ee~~~ 149 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKP-VS--PEEKEK 149 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC--HHHHHH
Confidence 344555567777777777666655555555555544431111000011223344445555555542211 11 122333
Q ss_pred HHhchhhhHHHHH
Q psy3495 101 AQTQGGKWQRMLQ 113 (266)
Q Consensus 101 a~q~e~kWqK~Lq 113 (266)
+...-.+|++.+-
T Consensus 150 ~~~~~~~~~k~w~ 162 (169)
T PF07106_consen 150 LEKEYKKWRKEWK 162 (169)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555666554
No 24
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.34 E-value=1.6e+02 Score=25.77 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhh-------cCCCchhhhhhhhhhhhh--------hHHHH
Q psy3495 21 GEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELES-------CDNPQELQCQIKEINERA--------TLFRI 85 (266)
Q Consensus 21 ~~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs-------~~~p~e~~~kik~V~ERA--------TLFKI 85 (266)
+-.+++..+-.|.++|..|+....-|.|+...|--.+.++-. .+. +++..+..+...+ .+-..
T Consensus 15 eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~--~L~~~L~~~~~~~~~~~~~~~~l~~~ 92 (200)
T cd07624 15 EFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASET--ELAPLLEGVSSAVERCTAALEVLLSD 92 (200)
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999988888777775543 221 3455555553211 12222
Q ss_pred hHHHHHHHHHHHHHHHHh
Q psy3495 86 TTNAMINSCGKYLEIAQT 103 (266)
Q Consensus 86 TS~AMInAc~efL~La~q 103 (266)
.....+..+.+|+.++..
T Consensus 93 ~~~~f~e~Lkey~~y~~s 110 (200)
T cd07624 93 HEFVFLPPLREYLLYSDA 110 (200)
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 334466677788777763
No 25
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=52.16 E-value=2.6e+02 Score=28.11 Aligned_cols=88 Identities=18% Similarity=0.240 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhhhH-----------HHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhh------hhhhhhhhhHHHHh
Q psy3495 24 KLENIIKTLSVNLEQL-----------QSYNEIINKHGAALLRTLSELESCDNPQELQCQ------IKEINERATLFRIT 86 (266)
Q Consensus 24 el~~~lR~LseKL~DL-----------~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~k------ik~V~ERATLFKIT 86 (266)
++..-++.|+.+|.++ .|-+.|+.++..+|+.-|.+++....-.+.... ++...+.-..|++-
T Consensus 120 e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L 199 (511)
T PF09787_consen 120 ELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQEL 199 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788888777 677889999999999988888762211111111 12223344455555
Q ss_pred HHHHHHHHHHHHHHHHhchhhhHHHHH
Q psy3495 87 TNAMINSCGKYLEIAQTQGGKWQRMLQ 113 (266)
Q Consensus 87 S~AMInAc~efL~La~q~e~kWqK~Lq 113 (266)
..... |+.+|++..+ +...|+..++
T Consensus 200 ~~~~~-A~~~~~~~l~-~~~e~~~~l~ 224 (511)
T PF09787_consen 200 EERPK-ALRHYIEYLR-ESGELQEQLE 224 (511)
T ss_pred HHHHH-HHHHHHHHHH-HHHHHHHHHH
Confidence 55555 9999999775 4444555444
No 26
>KOG0018|consensus
Probab=50.98 E-value=1.7e+02 Score=33.27 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=60.9
Q ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHH
Q psy3495 20 DGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLE 99 (266)
Q Consensus 20 ~~~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~ 99 (266)
+...++...+..|..-+..+.|.++-|.-+++++.|++.++.... +.+.....+-+-...-....+..+
T Consensus 402 ~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~---------~~l~~~~~~~~~~~~e~n~eL~~~-- 470 (1141)
T KOG0018|consen 402 ERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDL---------DSLESLVSSAEEEPYELNEELVEV-- 470 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH---------HHHHHHHhhhhhhHHHHHHHHHHH--
Confidence 345566677778888888899999999999999999999875421 111111111111111112222222
Q ss_pred HHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 100 IAQTQGGKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 100 La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
..+-++. ++=.||-.|++++.|.++.|.+...
T Consensus 471 -~~ql~da--s~dr~e~sR~~~~~eave~lKr~fP 502 (1141)
T KOG0018|consen 471 -LDQLLDA--SADRHEGSRRSRKQEAVEALKRLFP 502 (1141)
T ss_pred -HHHHHhh--hhhhcccHHHHHHHHHHHHHHHhCC
Confidence 2221211 2334677899999999999998876
No 27
>PHA03332 membrane glycoprotein; Provisional
Probab=50.32 E-value=2.5e+02 Score=32.23 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=40.2
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q psy3495 41 SYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRL 120 (266)
Q Consensus 41 Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~ 120 (266)
-..|-+.+.|++|-+.=+.| ..+|+++++|++..----|--+-.....+.-...+-++----++++.++-.
T Consensus 909 ~lsDai~klGnti~kisatl---------~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~ql~~~~~~~N~~ie~~~ 979 (1328)
T PHA03332 909 KTSDVITKLGDTIAKISATL---------DNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQLKELGTTTNERIEEVM 979 (1328)
T ss_pred HHHHHHHHhhhHHHHHHHHH---------HhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 34455556666666555554 347888888888877666654444444444444443333344454444433
Q ss_pred HH
Q psy3495 121 KL 122 (266)
Q Consensus 121 rL 122 (266)
+.
T Consensus 980 aa 981 (1328)
T PHA03332 980 AA 981 (1328)
T ss_pred HH
Confidence 33
No 28
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=49.90 E-value=1.1e+02 Score=23.15 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhch
Q psy3495 26 ENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQG 105 (266)
Q Consensus 26 ~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e 105 (266)
......|..++..+..=..-+.++...+..++.+|...... ....+.| |+ .+|+.+..-++..+.+=++.+...-
T Consensus 4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~---~~~y~~v-G~-~fv~~~~~~~~~~L~~~~~~~~~~i 78 (106)
T PF01920_consen 4 QNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDD---RKVYKSV-GK-MFVKQDKEEAIEELEERIEKLEKEI 78 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT----EEEEEE-TT-EEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---chhHHHH-hH-HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666667777777888888775432 2233344 22 2455566777777777777666555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 106 GKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 106 ~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
.+..+ +...+++.++.+.+++.
T Consensus 79 ~~l~~-------~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 79 KKLEK-------QLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHH
Confidence 55444 44455555555555443
No 29
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.77 E-value=3.3e+02 Score=30.60 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhhC
Q psy3495 118 QRLKLEELLEQMARCST 134 (266)
Q Consensus 118 QR~rLEE~lEqLAKQh~ 134 (266)
+|..|++.++.|..+..
T Consensus 882 ~r~~le~~L~el~~el~ 898 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQ 898 (1311)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666666655543
No 30
>KOG4787|consensus
Probab=47.47 E-value=1.5e+02 Score=32.10 Aligned_cols=105 Identities=11% Similarity=0.107 Sum_probs=66.2
Q ss_pred HHHHHHHHhhhhHH-HHHHHHHHhHHHHHHHHHhhhh-cCCCchhhhhhhhh---hhhhhHHHHhHHHHHHHHHHHHHHH
Q psy3495 27 NIIKTLSVNLEQLQ-SYNEIINKHGAALLRTLSELES-CDNPQELQCQIKEI---NERATLFRITTNAMINSCGKYLEIA 101 (266)
Q Consensus 27 ~~lR~LseKL~DL~-Tc~DLI~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V---~ERATLFKITS~AMInAc~efL~La 101 (266)
+-++++.+.|.+|+ ||.+==.++..+||.-|.--.. .++ +.-+++.. .+|+.-|-..-.-.|..+..=+.+.
T Consensus 437 ~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRI---L~~RL~K~~R~q~R~~~~~~~d~~kIK~LE~e~R~S 513 (852)
T KOG4787|consen 437 TELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRI---LNERLNKLHRKQVRDGEIQYSDELKIKILELEKRLS 513 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH---HHHHHhHHHHHHHhhhhhccchHHHHHHHHHHHHHH
Confidence 44667888888874 7888888888888887773222 111 22344333 4466666555555666666666665
Q ss_pred HhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 102 QTQGGKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 102 ~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
..-..+.++-|.-=+..+.++|++.+-|++-..
T Consensus 514 ~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~~~ 546 (852)
T KOG4787|consen 514 EKLAIDLVSELEGKIPTIDEIEQCCEVLAAVET 546 (852)
T ss_pred HHHHHHHHHHHHhhcCcHhHHHHHHHHHHHHhh
Confidence 444444444444444489999999998877654
No 31
>KOG1029|consensus
Probab=46.47 E-value=3.4e+02 Score=30.37 Aligned_cols=80 Identities=19% Similarity=0.205 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhhh--------------HHHHHHHHHHhHHHHHHHHHhhhhcC-----CCchhhhhhhhh-------
Q psy3495 23 VKLENIIKTLSVNLEQ--------------LQSYNEIINKHGAALLRTLSELESCD-----NPQELQCQIKEI------- 76 (266)
Q Consensus 23 ~el~~~lR~LseKL~D--------------L~Tc~DLI~KhG~aLQRsL~ELEs~~-----~p~e~~~kik~V------- 76 (266)
..|+..+..|+.||.| +.+.+|++..-++.||--|-|+.... .-..+.+++|+.
T Consensus 447 etLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~ 526 (1118)
T KOG1029|consen 447 ETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKET 526 (1118)
T ss_pred HHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCc
Confidence 3456677778888777 66788888888888877777665411 123445666655
Q ss_pred hhhhhHHHHh---HHHHHHHHHHHHHHHH
Q psy3495 77 NERATLFRIT---TNAMINSCGKYLEIAQ 102 (266)
Q Consensus 77 ~ERATLFKIT---S~AMInAc~efL~La~ 102 (266)
+.|-.+.+.. -.++++++.+-++-+.
T Consensus 527 ~~~~s~L~aa~~~ke~irq~ikdqldels 555 (1118)
T KOG1029|consen 527 TQRKSELEAARRKKELIRQAIKDQLDELS 555 (1118)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222222 2345666666655544
No 32
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=46.08 E-value=1.9e+02 Score=24.65 Aligned_cols=92 Identities=16% Similarity=0.253 Sum_probs=53.9
Q ss_pred HHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHH-HHHHHHHhchhhh
Q psy3495 30 KTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCG-KYLEIAQTQGGKW 108 (266)
Q Consensus 30 R~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~-efL~La~q~e~kW 108 (266)
-.|...|.-+-+-+.-|.-+.....++|.||+. |.+-|.+||.+-+.+|..-. +-++=...+.+..
T Consensus 16 QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~-------------l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~L 82 (119)
T COG1382 16 QQLQQQLQKVILQKQQLEAQLKEIEKALEELEK-------------LDEDAPVYKKVGNLLVKVSKEEAVDELEERKETL 82 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------CCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHH
Confidence 345555555555555566666677777777766 34456777777776665432 2333344444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 109 QRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 109 qK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
..++..=..|-.++++.++.|.....
T Consensus 83 e~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 83 ELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566677777777665554
No 33
>KOG3208|consensus
Probab=45.62 E-value=2e+02 Score=27.14 Aligned_cols=119 Identities=19% Similarity=0.237 Sum_probs=74.5
Q ss_pred CcHHHHHHHHHHHHHhhhh-HHHHHHHHHH-------hHHHHHH---HHHhhhhcCCCchhhhhhhhhhhhhhH---HHH
Q psy3495 20 DGEVKLENIIKTLSVNLEQ-LQSYNEIINK-------HGAALLR---TLSELESCDNPQELQCQIKEINERATL---FRI 85 (266)
Q Consensus 20 ~~~~el~~~lR~LseKL~D-L~Tc~DLI~K-------hG~aLQR---sL~ELEs~~~p~e~~~kik~V~ERATL---FKI 85 (266)
+.-++|++..|.|+..|+- |-.|+-|-+. -+..|++ +|..++..- .-+.+++..|++...- --.
T Consensus 5 s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~ei--e~LLeql~~vndsm~~~~~s~a 82 (231)
T KOG3208|consen 5 SSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEI--EGLLEQLQDVNDSMNDCASSPA 82 (231)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHH--HHHHHHHHHHHHHHHhhccCCC
Confidence 3447899999999888876 6777777666 3345555 555333200 0123555666654443 233
Q ss_pred hHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q psy3495 86 TTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCSTGPPVHDS 141 (266)
Q Consensus 86 TS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~~~p~~~g 141 (266)
-++|++.++..--++.+-....++|.... ..+.++-+..++-..++.++.|..+|
T Consensus 83 ~~aa~~htL~RHrEILqdy~qef~rir~n-~~a~~e~~~Ll~s~~~~~~~~~~~~~ 137 (231)
T KOG3208|consen 83 NSAAVMHTLQRHREILQDYTQEFRRIRSN-IDAKRERESLLESVRADISSYPSASG 137 (231)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCCccCC
Confidence 45678888888888888888888888777 44555555566666666666655544
No 34
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=45.40 E-value=2.7e+02 Score=26.28 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhh
Q psy3495 22 EVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELE 61 (266)
Q Consensus 22 ~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELE 61 (266)
...|.+.+..|.+-+.+|...++-|.+....|+....+++
T Consensus 165 ~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~ 204 (325)
T PF08317_consen 165 YAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIE 204 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444455555555555666666666666666666665444
No 35
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=44.99 E-value=2.1e+02 Score=25.98 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhhhHH
Q psy3495 25 LENIIKTLSVNLEQLQ 40 (266)
Q Consensus 25 l~~~lR~LseKL~DL~ 40 (266)
+-.++|+|.+|+.-|+
T Consensus 2 visALK~LQeKIrrLE 17 (178)
T PF14073_consen 2 VISALKNLQEKIRRLE 17 (178)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4568899999987764
No 36
>KOG0239|consensus
Probab=44.13 E-value=3.2e+02 Score=29.08 Aligned_cols=93 Identities=19% Similarity=0.287 Sum_probs=45.8
Q ss_pred HHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHH
Q psy3495 32 LSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRM 111 (266)
Q Consensus 32 LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~ 111 (266)
++.+...|.--...+.+.+..||..|.+|.. +++.++.....+.-.....+.-...-+.-......-....
T Consensus 225 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~---------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~ 295 (670)
T KOG0239|consen 225 LRRNIKPLEGLESTIKKKIQALQQELEELKA---------ELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEK 295 (670)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555556666666655543 3333433333333322222222222233333334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 112 LQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 112 Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
+ .|.++|++|=.++-+|.-..+
T Consensus 296 ~-~e~~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 296 K-KEKEERRKLHNEILELKGNIR 317 (670)
T ss_pred H-HHHHHHHHHHHHHHHhhcCce
Confidence 5 667777777777777755554
No 37
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=43.23 E-value=3.2e+02 Score=27.40 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=8.9
Q ss_pred hhHHHHhHHHHHHHHHH
Q psy3495 80 ATLFRITTNAMINSCGK 96 (266)
Q Consensus 80 ATLFKITS~AMInAc~e 96 (266)
..+|+.....++..+.+
T Consensus 287 ~e~~~~~~~~~~~~le~ 303 (582)
T PF09731_consen 287 EELLSKLREELEQELEE 303 (582)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34466666666544443
No 38
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=42.73 E-value=1.9e+02 Score=26.70 Aligned_cols=91 Identities=16% Similarity=0.250 Sum_probs=0.0
Q ss_pred Hhhhh-HHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHH
Q psy3495 34 VNLEQ-LQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRML 112 (266)
Q Consensus 34 eKL~D-L~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~L 112 (266)
+||.. |.+..+-+..+|+.|...|..+...- ..+...+..|.+-+.-+...+.+.-.+..+++.++..-..-.+-..
T Consensus 13 ~kLn~tL~ala~Al~GrG~~lg~~l~~l~~~l--~~ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~ 90 (267)
T PF11887_consen 13 AKLNATLSALATALDGRGEQLGETLDDLNTLL--ATLNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRTLV 90 (267)
T ss_pred HHHHHHHHHHHHHHcCcchhHHHHHHHHHHHH--HHHhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3495 113 QHERDQRLKLEELLEQMA 130 (266)
Q Consensus 113 q~ErEQR~rLEE~lEqLA 130 (266)
+ ||..|...+-.+.
T Consensus 91 ~----~~~~L~~lL~~~~ 104 (267)
T PF11887_consen 91 D----QRQQLDALLLSAT 104 (267)
T ss_pred H----hHHHHHHHHHHHH
No 39
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=42.37 E-value=2.2e+02 Score=30.38 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Q psy3495 22 EVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLS 58 (266)
Q Consensus 22 ~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ 58 (266)
...|+.....|++|++++..-++.|.+..+.|.+.+.
T Consensus 588 ~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 588 RKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556667777777777777777777777666664
No 40
>KOG2483|consensus
Probab=41.60 E-value=3e+02 Score=25.71 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3495 87 TNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMA 130 (266)
Q Consensus 87 S~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLA 130 (266)
+.+++....+|+.-++..+.+-++.++.-..+.+.|++.|+||-
T Consensus 96 ~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 96 TLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred hhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78899999999999999999999999998889999999999884
No 41
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=41.08 E-value=1.6e+02 Score=22.37 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhh
Q psy3495 25 LENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELES 62 (266)
Q Consensus 25 l~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs 62 (266)
+...+..+..+|.+|...+..|..+++.+-..|.++..
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999999999999988766
No 42
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=41.04 E-value=88 Score=24.81 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=34.2
Q ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhh
Q psy3495 20 DGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELES 62 (266)
Q Consensus 20 ~~~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs 62 (266)
...-+|+.++..|..+++..+.=++-|...=..||.|++.|=.
T Consensus 23 ~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 23 QEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888888888888888888888888887743
No 43
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=40.42 E-value=2.3e+02 Score=24.02 Aligned_cols=29 Identities=28% Similarity=0.285 Sum_probs=16.7
Q ss_pred HhhhhHHHHHHHHHHhHHHHHHHHHhhhh
Q psy3495 34 VNLEQLQSYNEIINKHGAALLRTLSELES 62 (266)
Q Consensus 34 eKL~DL~Tc~DLI~KhG~aLQRsL~ELEs 62 (266)
.++.+++.--.-+.+..+.+++.+.++.+
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~ 109 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELES 109 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555666666666666544
No 44
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=40.03 E-value=2.7e+02 Score=24.82 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH-------hhhhcCCCchhhhhhhhh
Q psy3495 26 ENIIKTLSVNLEQLQSYNEIINKHGAALLRTLS-------ELESCDNPQELQCQIKEI 76 (266)
Q Consensus 26 ~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~-------ELEs~~~p~e~~~kik~V 76 (266)
...+-.|...|.+|...-+.|.+|-..|=-++. .|-..+....++..+..+
T Consensus 18 k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~l 75 (224)
T cd07623 18 QQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQL 75 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 345555666666666666666666555555444 444444434444444444
No 45
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.49 E-value=2.2e+02 Score=23.63 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhh
Q psy3495 23 VKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELES 62 (266)
Q Consensus 23 ~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs 62 (266)
.+....++.|...|..|....+-+.|+-..|-..+.++-.
T Consensus 7 ~~~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~ 46 (218)
T cd07596 7 EEAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGK 46 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888888888888888888877777765543
No 46
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=39.19 E-value=2.7e+02 Score=26.55 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=18.4
Q ss_pred HHHHhhhhHHHHHHH---HHHhHHHHHHHHH
Q psy3495 31 TLSVNLEQLQSYNEI---INKHGAALLRTLS 58 (266)
Q Consensus 31 ~LseKL~DL~Tc~DL---I~KhG~aLQRsL~ 58 (266)
.|..|+.||...+.| |...|++|--.|+
T Consensus 111 ~l~~k~~dlk~~R~Laseit~~GA~LydlL~ 141 (267)
T PF10234_consen 111 DLSSKIQDLKAARQLASEITQRGASLYDLLG 141 (267)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666665555 5677777777776
No 47
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.37 E-value=2.5e+02 Score=26.04 Aligned_cols=50 Identities=8% Similarity=0.229 Sum_probs=37.2
Q ss_pred hhhhhhhh-hhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q psy3495 69 LQCQIKEI-NERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQ 118 (266)
Q Consensus 69 ~~~kik~V-~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQ 118 (266)
++..+..| ++|.+||--+.-.++.-+..|+.=-...-+--+|.+.++.+.
T Consensus 72 F~~~L~~ie~~r~~l~d~aq~s~~~~L~~F~Kedi~~~Ke~KK~FdK~se~ 122 (207)
T cd07633 72 FAELLQEVEEERMMMVQNASDLLIKPLENFRKEQIGFTKERKKKFEKDSEK 122 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 34555555 779999999999999999999877666666666777766553
No 48
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=37.02 E-value=1.7e+02 Score=25.68 Aligned_cols=32 Identities=6% Similarity=0.275 Sum_probs=18.6
Q ss_pred HHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhh
Q psy3495 32 LSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEI 76 (266)
Q Consensus 32 LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V 76 (266)
|+++ .+..+.+..+ .|..|+++.+ .+++++.+
T Consensus 57 lr~R---ydrlr~va~r----vQ~vlgd~At------~gERl~al 88 (156)
T PF08372_consen 57 LRMR---YDRLRSVAGR----VQNVLGDVAT------QGERLQAL 88 (156)
T ss_pred HHHH---HHHHHHHHHH----HHHHHHHHHH------HHHHHHHh
Confidence 5555 3444444444 7777777755 45666666
No 49
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=36.92 E-value=2.1e+02 Score=30.14 Aligned_cols=75 Identities=19% Similarity=0.333 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHH---HHH
Q psy3495 39 LQSYNEIINKHGAALLRTLSELES-CDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRM---LQH 114 (266)
Q Consensus 39 L~Tc~DLI~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~---Lq~ 114 (266)
..-+.-+|.++++.|+-..++|.. +...-+...+++.+.|+--..+--++ -..-|+.-+.+..++|--+ |+.
T Consensus 262 f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~n----k~~~~~~~mk~K~~~~~g~l~kl~~ 337 (622)
T COG5185 262 FEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSN----KYENYVNAMKQKSQEWPGKLEKLKS 337 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHhcchHHHHHHH
Confidence 344667788888888888887765 22233455677777665544444443 3444566778888888644 444
Q ss_pred HHH
Q psy3495 115 ERD 117 (266)
Q Consensus 115 ErE 117 (266)
|.+
T Consensus 338 eie 340 (622)
T COG5185 338 EIE 340 (622)
T ss_pred HHH
Confidence 444
No 50
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=36.68 E-value=1.8e+02 Score=23.88 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=41.6
Q ss_pred hhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3495 71 CQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARC 132 (266)
Q Consensus 71 ~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQ 132 (266)
.++++++--||+. ...|+.++.+-+.-+..+-.+-+|.|+.|+.++..-...+++|.+.
T Consensus 57 S~~R~fRhTaT~~---~l~i~t~L~~v~~~l~~~~~~~~rQl~aE~~k~~~~~~r~~~l~~~ 115 (118)
T PF08514_consen 57 SKVRPFRHTATLA---ALKIMTSLCDVAKSLSEELEKTQRQLEAEKKKKRKNKSRLEELEQK 115 (118)
T ss_pred CCceeehHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3555555555554 4568888888888888888999999999988666555566666543
No 51
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=36.61 E-value=2.8e+02 Score=23.88 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhh-------cCCCchhhhhhhhhhhhhhHHH----HhHHH--
Q psy3495 23 VKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELES-------CDNPQELQCQIKEINERATLFR----ITTNA-- 89 (266)
Q Consensus 23 ~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs-------~~~p~e~~~kik~V~ERATLFK----ITS~A-- 89 (266)
.+.+..+..|..+|..|......|.++-..|-.++.++-. ......++..+..+.+-+.-.+ .-+..
T Consensus 27 ~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~ 106 (236)
T PF09325_consen 27 EEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELLEEQANQEE 106 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4556688889999999999999999998888888776654 2222334555555543222222 11222
Q ss_pred --HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 90 --MINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 90 --MInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
+...+.+|+.++.. -+..| .+|..+.-.++.+.+..+
T Consensus 107 ~~l~~~L~ey~~~~~s----vk~~l----~~R~~~~~~~~~a~~~l~ 145 (236)
T PF09325_consen 107 ETLGEPLREYLRYIES----VKEAL----NRRDKKLIEYQNAEKELQ 145 (236)
T ss_pred HHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHHHHHHHHH
Confidence 34456666666642 22222 255555555544444443
No 52
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=36.53 E-value=2.5e+02 Score=23.27 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhh
Q psy3495 23 VKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSEL 60 (266)
Q Consensus 23 ~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~EL 60 (266)
..+...++.|..-+.-|.....-+..+.+.++|-++.+
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~ 92 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASA 92 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555533
No 53
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=36.25 E-value=1.7e+02 Score=21.43 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy3495 22 EVKLENIIKTLSVNLEQLQSYNEIINK 48 (266)
Q Consensus 22 ~~el~~~lR~LseKL~DL~Tc~DLI~K 48 (266)
..+|+..+..|..+|.+|...+.-+..
T Consensus 9 v~~i~~~i~~i~~~~~~l~~l~~~~l~ 35 (103)
T PF00804_consen 9 VQEIREDIDKIKEKLNELRKLHKKILS 35 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356677777788887777776654433
No 54
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=35.71 E-value=1.5e+02 Score=22.67 Aligned_cols=70 Identities=17% Similarity=0.363 Sum_probs=44.3
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhh-------hhhhhHHHHhHHHHHHHHHHHHH--HHHhchhhhHHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEI-------NERATLFRITTNAMINSCGKYLE--IAQTQGGKWQRMLQHE 115 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V-------~ERATLFKITS~AMInAc~efL~--La~q~e~kWqK~Lq~E 115 (266)
+..|+..+...|+.+-. +.++..+...++.+ .-....|..=..+++.++.+.+. +-....+.|.+.+..-
T Consensus 57 ~~~~~~~~~~~l~~~v~~l~~~~~l~~~l~~lg~~H~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~aW~~~~~~i 136 (140)
T cd01040 57 FKAHGKRVLNALDEAIKNLDDLEALKALLAKLGRKHAKRGVDPEHFKLFGEALLEVLAEVLGDDFTPEVKAAWDKLLDVI 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCcCCHHHHHHHHHHHHHH
Confidence 44566666666665544 23333333444444 12566677777888888888886 5667778898887653
No 55
>COG3027 zapA Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.58 E-value=2.5e+02 Score=23.06 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=24.0
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHhchh
Q psy3495 77 NERATLFRITTNAMINSCGKYLEIAQTQGG 106 (266)
Q Consensus 77 ~ERATLFKITS~AMInAc~efL~La~q~e~ 106 (266)
+..+.+=|++..|-||.+.+.+.+-+.-.+
T Consensus 43 ~~~~~~~rl~vmaAlNv~~eL~~l~~k~~~ 72 (105)
T COG3027 43 NGVLDTERLAVMAALNVMHELLKLKEKLRD 72 (105)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447788899999999999999888754443
No 56
>PF12848 ABC_tran_2: ABC transporter
Probab=35.28 E-value=1.2e+02 Score=22.43 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=31.9
Q ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy3495 94 CGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMAR 131 (266)
Q Consensus 94 c~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAK 131 (266)
-+.|+..-+.....|.+....+...+.+|++.+..++.
T Consensus 15 Y~~y~~~k~~~~~~~~~~~~~~~k~~~~l~~~i~r~~~ 52 (85)
T PF12848_consen 15 YSDYLEQKEERRERQERQYEKQQKEIKRLEEFIRRFRA 52 (85)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888999999888899999998887765
No 57
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=34.35 E-value=2e+02 Score=21.68 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHHHH-HHHHHHHHHHHHhhhC
Q psy3495 90 MINSCGKYLEIAQTQGGKWQRMLQHERDQ-RLKLEELLEQMARCST 134 (266)
Q Consensus 90 MInAc~efL~La~q~e~kWqK~Lq~ErEQ-R~rLEE~lEqLAKQh~ 134 (266)
+-..+..+..++..+....-..|..++.+ ...|++.+++|-.+..
T Consensus 44 I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~ 89 (127)
T smart00502 44 IKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQE 89 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777766653 3345555555544443
No 58
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=33.95 E-value=2e+02 Score=23.66 Aligned_cols=59 Identities=20% Similarity=0.319 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhc-CCCchhhhhhhhhhhhhhHHHH-hHHHHHHHHHHHHHHHH
Q psy3495 39 LQSYNEIINKHGAALLRTLSELESC-DNPQELQCQIKEINERATLFRI-TTNAMINSCGKYLEIAQ 102 (266)
Q Consensus 39 L~Tc~DLI~KhG~aLQRsL~ELEs~-~~p~e~~~kik~V~ERATLFKI-TS~AMInAc~efL~La~ 102 (266)
++..-+.|..++..|+.++..|... ..|-+...+. ...+=|+ .|..++..+..|+.|++
T Consensus 70 ~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~-----~~~L~rl~~t~~LLR~~~r~l~L~~ 130 (132)
T PF10392_consen 70 LESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKL-----TSQLERLHQTSDLLRSVSRFLQLVR 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555566666666666666541 2222221111 2222222 24557888888888875
No 59
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=33.94 E-value=4.5e+02 Score=25.76 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=10.5
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHHH
Q psy3495 77 NERATLFRITTNAMINSCGKYLEIA 101 (266)
Q Consensus 77 ~ERATLFKITS~AMInAc~efL~La 101 (266)
.+...-+.-+..-.|..+..+++++
T Consensus 380 ~~~~~~l~~a~~~~L~~~~~~l~~~ 404 (459)
T PF10337_consen 380 HEPFSDLLEACDEGLEHAIEWLELV 404 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333344444444444444
No 60
>PRK09343 prefoldin subunit beta; Provisional
Probab=33.14 E-value=2.8e+02 Score=22.84 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=47.5
Q ss_pred HHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHH
Q psy3495 31 TLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQR 110 (266)
Q Consensus 31 ~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK 110 (266)
.|..++.-+.+=+..+-.+...+..++.||+.+..... -.+.| |+ .+.|.+-.-++..+..=++++..+-++..|
T Consensus 18 ~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~---VYk~V-G~-vlv~qd~~e~~~~l~~r~E~ie~~ik~lek 92 (121)
T PRK09343 18 QLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTP---IYKIV-GN-LLVKVDKTKVEKELKERKELLELRSRTLEK 92 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcch---hHHHh-hH-HHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555555555321111 11111 11 233444455556666666666666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy3495 111 MLQHERDQRLKLEELLEQMARCS 133 (266)
Q Consensus 111 ~Lq~ErEQR~rLEE~lEqLAKQh 133 (266)
...+=+++=..+|..+.++-.++
T Consensus 93 q~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 93 QEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555555555555554444
No 61
>KOG2070|consensus
Probab=33.07 E-value=97 Score=32.69 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3495 90 MINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCS 133 (266)
Q Consensus 90 MInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh 133 (266)
-+-|+.+=|..++|.-+|..|-|+.|+.-|++||..+.++-++.
T Consensus 617 tvyalkd~v~~lqqd~~kmkk~leeEqkaRrdLe~ll~k~l~~~ 660 (661)
T KOG2070|consen 617 TVYALKDEVSELQQDNKKMKKVLEEEQKARRDLEKLLRKMLKVI 660 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34577888999999999999999999999999999998886654
No 62
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=32.97 E-value=5.3e+02 Score=26.07 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhc-----CCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHH
Q psy3495 39 LQSYNEIINKHGAALLRTLSELESC-----DNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQ 113 (266)
Q Consensus 39 L~Tc~DLI~KhG~aLQRsL~ELEs~-----~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq 113 (266)
|.+-.+.|..+++.||-.+.+|-.. ..|.. ..++.|...... +=..+..+-+.+.+--..|+|+|+
T Consensus 211 L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~--~qle~v~kdi~~-------a~~~L~~m~~~i~~~kp~WkKiWE 281 (424)
T PF03915_consen 211 LSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSP--KQLETVAKDISR-------ASKELKKMKEYIKTEKPIWKKIWE 281 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H--HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCH--HHHHHHHHHHHH-------HHHHHHHHHHHHHHhCHHHHHHHH
Confidence 6666777888888888888887652 11111 233333322221 122334444444555678999999
Q ss_pred HHHH
Q psy3495 114 HERD 117 (266)
Q Consensus 114 ~ErE 117 (266)
.|-+
T Consensus 282 ~EL~ 285 (424)
T PF03915_consen 282 SELQ 285 (424)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 63
>cd01067 globin_like superfamily containing globins and truncated hemoglobins
Probab=32.49 E-value=1e+02 Score=24.03 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=25.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Q psy3495 82 LFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHER 116 (266)
Q Consensus 82 LFKITS~AMInAc~efL~La~q~e~kWqK~Lq~Er 116 (266)
-|-.-...++.++..+......-...|.+.+..++
T Consensus 82 ~f~~~~~~L~~~l~~~~~~~~~~~~Aw~~~~~~~~ 116 (117)
T cd01067 82 VFTAFWKLLEEYLGKKTTLDEPTIQAWHEIGREFA 116 (117)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhc
Confidence 57777777777777766545667788999888653
No 64
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=32.43 E-value=2.3e+02 Score=24.33 Aligned_cols=67 Identities=21% Similarity=0.264 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHHH-HHHHHHHHHHH
Q psy3495 50 GAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHE-RDQRLKLEELL 126 (266)
Q Consensus 50 G~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~E-rEQR~rLEE~l 126 (266)
|++|.-+|.+|- ..+..+..++..||-+..-++.|.+...=++++ -++.+.-|+.- +++=.+|.+++
T Consensus 8 gaalG~~~~eLl---------k~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~e-I~~~~~eld~~~~ee~e~L~~~L 75 (147)
T PF05659_consen 8 GAALGAVFGELL---------KAVIDASKKSLSFKSILKRLESTLESIIPIIKE-IDKLNVELDRPRQEEIERLKELL 75 (147)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHH-HHHHhhhcCCchhHHHHHHHHHH
Confidence 566666666652 244555667788887777777777666655543 33334444433 33334444444
No 65
>PF06179 Med22: Surfeit locus protein 5 subunit 22 of Mediator complex; PDB: 3R84_P 3RJ1_K.
Probab=31.92 E-value=2.6e+02 Score=22.19 Aligned_cols=31 Identities=10% Similarity=0.293 Sum_probs=25.3
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHhchhhhH
Q psy3495 79 RATLFRITTNAMINSCGKYLEIAQTQGGKWQ 109 (266)
Q Consensus 79 RATLFKITS~AMInAc~efL~La~q~e~kWq 109 (266)
.+-...+-+++||.||++.+.|.+.=-+.|-
T Consensus 36 ~~~~m~~~a~~lira~e~LL~Ltr~LKe~wl 66 (109)
T PF06179_consen 36 ESFQMEVRAAQLIRAAEDLLSLTRELKELWL 66 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566788999999999999988888873
No 66
>PRK14126 cell division protein ZapA; Provisional
Probab=31.53 E-value=2.3e+02 Score=22.19 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=18.1
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHH
Q psy3495 79 RATLFRITTNAMINSCGKYLEIA 101 (266)
Q Consensus 79 RATLFKITS~AMInAc~efL~La 101 (266)
...+=|+...|.||.|.+|+.+-
T Consensus 49 ~ls~~~iAVLaALNia~El~k~~ 71 (85)
T PRK14126 49 SLDTSKLAVLTAVNVIHDYIKLK 71 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34566788889999999998873
No 67
>KOG0995|consensus
Probab=31.36 E-value=6.7e+02 Score=26.73 Aligned_cols=92 Identities=16% Similarity=0.220 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhc-CCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHH---H
Q psy3495 39 LQSYNEIINKHGAALLRTLSELESC-DNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQ---H 114 (266)
Q Consensus 39 L~Tc~DLI~KhG~aLQRsL~ELEs~-~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq---~ 114 (266)
|+-+...++..++.|+....+|+.. .--.....++..++++-. +--.=+|-.+.||.-+.++..+|-+.|. .
T Consensus 226 l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~----~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~ 301 (581)
T KOG0995|consen 226 LEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKA----RLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKS 301 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH----HHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4445566777777777777666541 000001123333333211 1123356667777777888888877654 4
Q ss_pred HHH----HHHHHHHHHHHHHhhhC
Q psy3495 115 ERD----QRLKLEELLEQMARCST 134 (266)
Q Consensus 115 ErE----QR~rLEE~lEqLAKQh~ 134 (266)
|.+ ++.+|+++...|.+|..
T Consensus 302 Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 302 EIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 55566666666666664
No 68
>PF10493 Rod_C: Rough deal protein C-terminal region; InterPro: IPR019527 Rod, the Rough deal protein (also known as Kinetochore-associated protein 1) displays a dynamic intracellular staining pattern, localising first to kinetochores in pro-metaphase, but moving to kinetochore microtubules at metaphase. Early in anaphase the protein is once again restricted to the kinetochores, where it persists until the end of telophase. This behaviour is in all respects similar to that described for ZW10 [], and indeed the two proteins function together, localisation of each depending upon the other []. These two proteins are found at the kinetochore in complex with a third, Zwilch, in both flies and humans. The C- terminus is the most conserved part of the protein. During pro-metaphase, the ZW10-Rod complex, dynein/dynactin, and Mad2 all accumulate on unattached kinetochores; microtubule capture leads to Mad2 depletion as it is carried off by dynein/dynactin; ZW10-Rod complex accumulation continues, replenishing kinetochore dynein. The continuing recruitment of the ZW10-Rod complex during metaphase may serve to maintain adequate dynein/dynactin complex on kinetochores for assisting chromatid movement during anaphase[]. The ZW10-Rod complex acts as a bridge whose association with Zwint-1 links Mad1 and Mad2, components that are directly responsible for generating the diffusible 'wait anaphase' signal, to a structural, inner kinetochore complex containing Mis12 and KNL-1AF15q14, the last of which has been proved to be essential for kinetochore assembly in Caenorhabditis elegans. Removal of ZW10 or Rod inactivates the mitotic checkpoint [].
Probab=31.33 E-value=1.1e+02 Score=31.47 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 89 AMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 89 AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
--|.|+..|++++ ++|.+-+..+-+-+.+.|.+++.+.+|+.
T Consensus 122 dKv~alk~c~~la----~kW~~~l~~~~ea~ek~e~~~~kl~~~y~ 163 (551)
T PF10493_consen 122 DKVEALKFCVKLA----EKWLASLPPQDEAKEKAEAQLAKLKRQYR 163 (551)
T ss_pred HHHHHHHHHHHHH----HHHhhcCCCChHHHHHHHHHHHHHHHHHH
Confidence 3678899999998 45988777766666666666666666653
No 69
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=31.25 E-value=84 Score=25.50 Aligned_cols=49 Identities=10% Similarity=0.270 Sum_probs=36.4
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 80 ATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 80 ATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
=++|+-...-=|+++ =.+.+.+|++.+..=..+-..|.+.+|+|.+|+.
T Consensus 25 h~~YssKHE~KV~~L------KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 25 HALYSSKHETKVKAL------KKSYEARWEKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHhhHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555444444443 3467788999999888899999999999998875
No 70
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=30.89 E-value=2.8e+02 Score=22.15 Aligned_cols=102 Identities=19% Similarity=0.162 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhh----hhhH---------------HHH
Q psy3495 25 LENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINE----RATL---------------FRI 85 (266)
Q Consensus 25 l~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~E----RATL---------------FKI 85 (266)
+......|.+.+..|++-..-+.....++..+++-|+..... +....+-.|.. ++.+ --.
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~-~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~ 82 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA-EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEK 82 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEe
Confidence 444566677777777777777777777777777766554321 11111111111 0000 003
Q ss_pred hHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHH
Q psy3495 86 TTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLE 127 (266)
Q Consensus 86 TS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lE 127 (266)
|..-.+..+..=++.+..+-+++++.+..=+++-..+++.++
T Consensus 83 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 83 DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555566666666666666655555555555443
No 71
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=30.88 E-value=5e+02 Score=29.01 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHH--------------------hHHHHHHHHHHHH
Q psy3495 39 LQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRI--------------------TTNAMINSCGKYL 98 (266)
Q Consensus 39 L~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKI--------------------TS~AMInAc~efL 98 (266)
|+.+.+.+..-+.-|-+.|.++-....+.++.+++..|++.+.-|+. ....++.|.++|+
T Consensus 43 ~~~~~~~L~~dv~~Lg~lLg~vl~~~~g~~~~~~ve~ir~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~v~raFs~~~ 122 (974)
T PTZ00398 43 LEDFQEPLDLDIKALEFLLFDLVKDHWPEDGFEIIFDILKLSMKFSENEDSESFNTLWKKIYNLDSGYLGLVVRLFNHMC 122 (974)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 34555555555555555555443333344555555555544444331 1335789999998
Q ss_pred HHHHhchhhhHHHHHHHHHH---------HHHHHHHHHHHHhhh
Q psy3495 99 EIAQTQGGKWQRMLQHERDQ---------RLKLEELLEQMARCS 133 (266)
Q Consensus 99 ~La~q~e~kWqK~Lq~ErEQ---------R~rLEE~lEqLAKQh 133 (266)
.|+---++.=+.+..+++++ .-.+.++++.|.++.
T Consensus 123 ~L~NiAE~~~~~r~~r~~~~~~~~~~~~~~~sl~~~l~~L~~~g 166 (974)
T PTZ00398 123 VLSNYAEWAHRIRRRRAFERSFTDNDRIFTESLKNTIEMLLQAG 166 (974)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCCCccCcHHHHHHHHHHcC
Confidence 88754444332222222221 234666777765443
No 72
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=30.86 E-value=59 Score=31.36 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3495 109 QRMLQHERDQRLKLEELLEQMARCS 133 (266)
Q Consensus 109 qK~Lq~ErEQR~rLEE~lEqLAKQh 133 (266)
-.+|++|.++|++|++.++.|-++-
T Consensus 93 l~RL~~EL~~Rk~L~~~~~el~~~k 117 (355)
T PF09766_consen 93 LARLEFELEQRKRLEEQLKELEQRK 117 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999988887776554
No 73
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=30.84 E-value=7.1e+02 Score=26.89 Aligned_cols=91 Identities=18% Similarity=0.282 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHH
Q psy3495 23 VKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQ 102 (266)
Q Consensus 23 ~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~ 102 (266)
....+.++.+.+++..|++-+.-|......|+|-+..|+. ++..++.+.- +++- -.-.+...+
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~---------~l~~~~r~~~-~~~~-------~~rei~~~~ 480 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLES---------ELERFRREVR-DKVR-------KDREIRARD 480 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH-HHHh-------hhHHHHHHH
Confidence 4455677889999999988888888888888887777765 3333333222 2221 123455556
Q ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3495 103 TQGGKWQRMLQHERDQRLKLEELLEQMA 130 (266)
Q Consensus 103 q~e~kWqK~Lq~ErEQR~rLEE~lEqLA 130 (266)
..-.+..|.|..+..+...|+..+++|.
T Consensus 481 ~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 481 RRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788999988888889988888874
No 74
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=30.77 E-value=4e+02 Score=27.64 Aligned_cols=9 Identities=33% Similarity=0.615 Sum_probs=7.4
Q ss_pred ccccccccc
Q psy3495 161 VFYDANEVM 169 (266)
Q Consensus 161 EFFDAvE~~ 169 (266)
+||+|++..
T Consensus 126 ~FF~~L~r~ 134 (618)
T PF06419_consen 126 EFFDALDRV 134 (618)
T ss_pred HHHHHHHHH
Confidence 999998753
No 75
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=30.49 E-value=2.9e+02 Score=27.45 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=15.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhh
Q psy3495 29 IKTLSVNLEQLQSYNEIINKHGAALLRTLSELES 62 (266)
Q Consensus 29 lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs 62 (266)
++.|+.+|..|+.-..-+....++++..+.-|+.
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 106 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLED 106 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555554444443
No 76
>KOG4643|consensus
Probab=30.19 E-value=7.4e+02 Score=28.50 Aligned_cols=111 Identities=18% Similarity=0.154 Sum_probs=63.8
Q ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhh-------------c-----CCCchhhhhhhhhhhhhh
Q psy3495 20 DGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELES-------------C-----DNPQELQCQIKEINERAT 81 (266)
Q Consensus 20 ~~~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs-------------~-----~~p~e~~~kik~V~ERAT 81 (266)
++...+.+.+-+|..|++||+--+++.-+|.+.|+---+-|.. + ..+.+.. ..-+|..|
T Consensus 294 se~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl---~~e~eqLt 370 (1195)
T KOG4643|consen 294 SEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESL---QVENEQLT 370 (1195)
T ss_pred cccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhH---HHHHHHhh
Confidence 3445667778889999999999999999999998865442221 1 1111111 11122222
Q ss_pred HHHHhHHHHHHHHHHHHHHHH----hchhhhHHHHHHHHHHH------HHHHHHHHHHHhhhC
Q psy3495 82 LFRITTNAMINSCGKYLEIAQ----TQGGKWQRMLQHERDQR------LKLEELLEQMARCST 134 (266)
Q Consensus 82 LFKITS~AMInAc~efL~La~----q~e~kWqK~Lq~ErEQR------~rLEE~lEqLAKQh~ 134 (266)
-=|+ -...|..=+++-.|=+ .-+..|.|.+..|.+.| .-|||.|-++-+|..
T Consensus 371 s~ra-lkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~ 432 (1195)
T KOG4643|consen 371 SDRA-LKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLA 432 (1195)
T ss_pred hHHH-HHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHH
Confidence 1000 1123333333332222 44678898888887644 567787877777664
No 77
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=29.95 E-value=6.7e+02 Score=26.33 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=29.0
Q ss_pred hhhhhhhhhhhhhhHHHHhHHHHH-------HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3495 68 ELQCQIKEINERATLFRITTNAMI-------NSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARC 132 (266)
Q Consensus 68 e~~~kik~V~ERATLFKITS~AMI-------nAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQ 132 (266)
+...++..+++++- |+|++|+= +-=++||.|-+.--++=.+.|+ .|+.|--.++.|--|
T Consensus 460 eeverLQ~lkgelE--kat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~----ERqkLKs~leKLvaq 525 (527)
T PF15066_consen 460 EEVERLQQLKGELE--KATTSALDLLKREKETREQEFLSLQEEFQKHEKENLE----ERQKLKSRLEKLVAQ 525 (527)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHh
Confidence 34466677766655 77777753 2334566554322222112222 444555555555443
No 78
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=29.90 E-value=1.9e+02 Score=23.33 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=30.1
Q ss_pred HhHHHHHHHHHHHHHHHHhchhhh----HHHHHHHHHHHHHHHHHH
Q psy3495 85 ITTNAMINSCGKYLEIAQTQGGKW----QRMLQHERDQRLKLEELL 126 (266)
Q Consensus 85 ITS~AMInAc~efL~La~q~e~kW----qK~Lq~ErEQR~rLEE~l 126 (266)
..-+.||.+++-||+-++++..+. ++.|+.-|+-|..+++..
T Consensus 29 ~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 29 AAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346889999999999999987654 455556666666655544
No 79
>KOG3003|consensus
Probab=29.67 E-value=4.6e+02 Score=24.86 Aligned_cols=67 Identities=28% Similarity=0.389 Sum_probs=38.2
Q ss_pred HHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH--HHHHHHHHHHHHHHH
Q psy3495 52 ALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH--ERDQRLKLEELLEQM 129 (266)
Q Consensus 52 aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~--ErEQR~rLEE~lEqL 129 (266)
.++|+++|++- +.++++..-|.|-.|.|-+- |.+.|+.+-..++.-+-.... =.++...|+..+|.|
T Consensus 92 k~~rs~Ad~eN------lr~R~~r~~edak~FaiQ~f-----~kdLleVaD~Le~a~~~v~ee~~~~d~~~~L~~l~eGl 160 (236)
T KOG3003|consen 92 KYLRSLAECEN------LRDRTIRDVEDAKKFAIQSF-----CKDLLEVADNLEKATECVKEESEKEDQKKDLKDLFEGL 160 (236)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcchhhcccccchHHHHHHhHH
Confidence 37999999876 34677778888888877653 444444444444333222221 122445555555444
No 80
>KOG3915|consensus
Probab=28.97 E-value=4.9e+02 Score=27.55 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3495 93 SCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMA 130 (266)
Q Consensus 93 Ac~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLA 130 (266)
.+..-|..-++--..+||+|-+|+.-|+++||.++-=+
T Consensus 546 slekql~~ErklR~~~qkr~kkEkk~k~k~qe~L~~~s 583 (641)
T KOG3915|consen 546 SLEKQLAMERKLRAIVQKRLKKEKKAKRKLQEALEFES 583 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33444444445555678888899999999999986544
No 81
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=28.27 E-value=5.2e+02 Score=27.14 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhh
Q psy3495 26 ENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSEL 60 (266)
Q Consensus 26 ~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~EL 60 (266)
..-+..|..+|.+|.+=-..+...+..|+-.+..+
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~ 361 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQL 361 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666665555555555555555555533
No 82
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=27.75 E-value=3e+02 Score=24.11 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhh-HHHHhHHHHHHHHHHHHH-HHHhchhhhHHHHHHHH
Q psy3495 39 LQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERAT-LFRITTNAMINSCGKYLE-IAQTQGGKWQRMLQHER 116 (266)
Q Consensus 39 L~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERAT-LFKITS~AMInAc~efL~-La~q~e~kWqK~Lq~Er 116 (266)
.+-|.-=+..|.+++++.+++.+. -|. .|..+-.+||+-...==+ +.+...+.++..++
T Consensus 25 ~~qY~QrL~g~~~e~~~~v~~F~~----------------~A~~~f~~~~~~li~~~~~s~dp~~~~~a~~~~~~~~--- 85 (167)
T PF11157_consen 25 AQQYQQRLGGHLDELRRQVAGFQA----------------TAARYFGGDREALIAHYRQSSDPVFRARAESMQATIE--- 85 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHcCCCHHHHHHHHHhCCCHHHHhhHHHHHHHHH---
Confidence 345666777888888888887655 222 336666666654433233 55556666555555
Q ss_pred HHHHHHHHHHHHHH
Q psy3495 117 DQRLKLEELLEQMA 130 (266)
Q Consensus 117 EQR~rLEE~lEqLA 130 (266)
|-.+|++.+..|+
T Consensus 86 -R~~~L~~~~~~l~ 98 (167)
T PF11157_consen 86 -RYQRLSQQLQALA 98 (167)
T ss_pred -HHHHHHHHHHHHh
Confidence 6666777666663
No 83
>PRK10972 Z-ring-associated protein; Provisional
Probab=27.63 E-value=2.6e+02 Score=23.23 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhhcCCCchhhhhhhhhhh---hhhHHHHhHHHHHHHHHHHHHHH
Q psy3495 51 AALLRTLSELESCDNPQELQCQIKEINE---RATLFRITTNAMINSCGKYLEIA 101 (266)
Q Consensus 51 ~aLQRsL~ELEs~~~p~e~~~kik~V~E---RATLFKITS~AMInAc~efL~La 101 (266)
++|+++-..|+. ++..|++ -..+.||...|.||-|.+.+..=
T Consensus 25 ~~L~~AA~~Ld~---------km~~ir~~~kv~~~EriavmaALNl~~ELl~~k 69 (109)
T PRK10972 25 DALNQAAEDLNQ---------RLQDLKERTRVTNTEQLVFIAALNICYELAQEK 69 (109)
T ss_pred HHHHHHHHHHHH---------HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 445555555433 4555544 34567787888888888877664
No 84
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=27.40 E-value=2.9e+02 Score=24.86 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhh
Q psy3495 22 EVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELES 62 (266)
Q Consensus 22 ~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs 62 (266)
.+.+...++.|..||.+.++-.+..-+.+..|++.++.|+.
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~ 211 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLED 211 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566678888888888888888888888888888887765
No 85
>KOG0251|consensus
Probab=27.35 E-value=5.7e+02 Score=26.39 Aligned_cols=84 Identities=20% Similarity=0.263 Sum_probs=60.3
Q ss_pred HHHHHHhHHHHHHHHHhhhhcCC-Cchhhhhh------hhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHHH
Q psy3495 43 NEIINKHGAALLRTLSELESCDN-PQELQCQI------KEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHE 115 (266)
Q Consensus 43 ~DLI~KhG~aLQRsL~ELEs~~~-p~e~~~ki------k~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~E 115 (266)
-+.|.+++..||+-|+.|-..+. +.....++ -.|+|=.-+|+.-..||||=+..|.+|-..+-.+--.++-+=
T Consensus 166 ~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekffem~~~~a~~al~iykr~ 245 (491)
T KOG0251|consen 166 TDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFFEMSKHDAIKALDIYKRF 245 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 57889999999999999877542 22332222 223888889999999999999999998877777666666555
Q ss_pred HHHHHHHHHHH
Q psy3495 116 RDQRLKLEELL 126 (266)
Q Consensus 116 rEQR~rLEE~l 126 (266)
-.|..+|=+-+
T Consensus 246 ~~q~e~L~~f~ 256 (491)
T KOG0251|consen 246 LSQTEKLSEFL 256 (491)
T ss_pred HHHHHHHHHHH
Confidence 55555554444
No 86
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=27.24 E-value=1.4e+02 Score=24.40 Aligned_cols=100 Identities=19% Similarity=0.314 Sum_probs=56.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhh----hhhhhHHHHhHHHHH------------
Q psy3495 28 IIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEI----NERATLFRITTNAMI------------ 91 (266)
Q Consensus 28 ~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V----~ERATLFKITS~AMI------------ 91 (266)
.++.|.+.+..|+---+.|..+...|...+.++.... +.++.+ .+.=++|-+++...+
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~------e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v 80 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQLEELQASINELDTAK------ETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIV 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEE
Confidence 4555666666666666666777777777777765522 222222 234455666655544
Q ss_pred ---------HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3495 92 ---------NSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCS 133 (266)
Q Consensus 92 ---------nAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh 133 (266)
-.+.+=+++...+-+.-.+.+..=.++-..+.+.++++.++.
T Consensus 81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 131 (140)
T PRK03947 81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQEL 131 (140)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 156666666666666655555555555555555555555444
No 87
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=27.23 E-value=1.4e+02 Score=27.50 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Q psy3495 21 GEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLS 58 (266)
Q Consensus 21 ~~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ 58 (266)
=+++|+.+-..|.+|++++.-..||+-|--+-|+..+.
T Consensus 52 LkNeLREVREELkEKmeEIKQIKdiMDKDFDKL~EFVE 89 (205)
T PF15079_consen 52 LKNELREVREELKEKMEEIKQIKDIMDKDFDKLHEFVE 89 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 36788888888999999999999999999888887665
No 88
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=26.47 E-value=4.5e+02 Score=23.16 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=8.2
Q ss_pred ccccCCCCCCCCCcccccc
Q psy3495 184 EPVRYPYSPHFPSCSLMTQ 202 (266)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~ 202 (266)
-|.+||-.+. .|||...+
T Consensus 217 v~Lpy~i~~~-gs~s~i~d 234 (302)
T PF10186_consen 217 VPLPYPITPS-GSRSTIID 234 (302)
T ss_pred CCCCCCcccC-ccccchhh
Confidence 3444444332 36665444
No 89
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=25.52 E-value=6.4e+02 Score=24.61 Aligned_cols=87 Identities=24% Similarity=0.301 Sum_probs=47.3
Q ss_pred HHHhHHHHHHHHHhhhhcCCCchhhhhhhhh----------------hhh-hhHHHHhHHHHHHHHHHHH---HHHHhch
Q psy3495 46 INKHGAALLRTLSELESCDNPQELQCQIKEI----------------NER-ATLFRITTNAMINSCGKYL---EIAQTQG 105 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs~~~p~e~~~kik~V----------------~ER-ATLFKITS~AMInAc~efL---~La~q~e 105 (266)
..++..+|.+.+..|+. ..+.+..+.+..+ .+| ..||+.-++.||+.|..++ ++....-
T Consensus 98 ~~~fL~~l~~~~~~l~~-~~~~~i~~~i~~l~~~l~~iw~~S~~y~~~~R~~~Ll~~isn~ii~~~~~~l~~~~l~~~~~ 176 (579)
T PF08385_consen 98 NNKFLKPLEPPFELLEA-SDLSEIQESIPPLFHHLRLIWRISRYYYPPERMTSLLEKISNQIIQKCQKYLDPSDLFSGDY 176 (579)
T ss_pred HHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHhCchhhhcCCH
Confidence 35566667666666633 2344444333332 122 4678888999999999999 3444433
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3495 106 GKWQRMLQHERDQRLKLEELLEQMARCS 133 (266)
Q Consensus 106 ~kWqK~Lq~ErEQR~rLEE~lEqLAKQh 133 (266)
..-.++|+.=.+=...-.+.|+.+..+.
T Consensus 177 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 204 (579)
T PF08385_consen 177 DEFIKKLNECIDILESWKETYEEFREQI 204 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444443334444444444444443
No 90
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=25.46 E-value=4.9e+02 Score=23.24 Aligned_cols=93 Identities=12% Similarity=0.127 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhh-------cCCCchhhhhhhhhhhhhhHHHHhH-------
Q psy3495 22 EVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELES-------CDNPQELQCQIKEINERATLFRITT------- 87 (266)
Q Consensus 22 ~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs-------~~~p~e~~~kik~V~ERATLFKITS------- 87 (266)
-.+++..+-.|.++|..|...+-=|.++...|...+.|+-. .+ ..+++.+..+.-.+..|=.+.
T Consensus 16 F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E--~~l~~~le~~g~~~d~~~~~~~~~~~~~ 93 (201)
T cd07622 16 FEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIE--KEMGDGLQKAGHYMDSYAASIDNGLEDE 93 (201)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677888899999999998888888888888777775543 22 244455444433333333333
Q ss_pred HHHHHHHHHHHHHHHhch----hhhHHHHHHHH
Q psy3495 88 NAMINSCGKYLEIAQTQG----GKWQRMLQHER 116 (266)
Q Consensus 88 ~AMInAc~efL~La~q~e----~kWqK~Lq~Er 116 (266)
...+-.+.+|+.++..-- .+.+|.++.|.
T Consensus 94 ~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~ 126 (201)
T cd07622 94 ELIADQLKEYLFFADSLRAVCKKHELLQYDLEK 126 (201)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556777777665321 44444444443
No 91
>smart00150 SPEC Spectrin repeats.
Probab=25.40 E-value=2.5e+02 Score=19.82 Aligned_cols=17 Identities=24% Similarity=0.659 Sum_probs=8.1
Q ss_pred hhhHHHHHHHHHHHHHH
Q psy3495 106 GKWQRMLQHERDQRLKL 122 (266)
Q Consensus 106 ~kWqK~Lq~ErEQR~rL 122 (266)
.+|.+..+.=.+|+.+|
T Consensus 84 ~~w~~l~~~~~~r~~~L 100 (101)
T smart00150 84 ERWEELKELAEERRQKL 100 (101)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45655544444444443
No 92
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=25.40 E-value=8.5e+02 Score=25.98 Aligned_cols=93 Identities=19% Similarity=0.291 Sum_probs=55.6
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhc-------hhhhHHHH
Q psy3495 40 QSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQ-------GGKWQRML 112 (266)
Q Consensus 40 ~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~-------e~kWqK~L 112 (266)
..++.---+.-.-|++.+-+++.... ......+-....+...+|..-+++..-|+.+-+++..+ ..|||+++
T Consensus 321 ~~l~~eaq~l~~~L~~~~~e~~~~~~-~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e~~~~Lq~K~q~I~ 399 (632)
T PF14817_consen 321 DALNKEAQALSQRLQRLLEEIERRLS-GSSEREALALELEVAGLKASLNALRSECQRLKEAAAERQEALRSLQAKWQRIL 399 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334445555555554211 11111112333478888888888888888887777644 46788887
Q ss_pred HHHHHHHHHHHHHHHHHHhhhC
Q psy3495 113 QHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 113 q~ErEQR~rLEE~lEqLAKQh~ 134 (266)
+. +..+...|+.|..|-|+-+
T Consensus 400 ~f-rqlv~e~QeqIr~LiK~Ns 420 (632)
T PF14817_consen 400 DF-RQLVSEKQEQIRALIKGNS 420 (632)
T ss_pred HH-HHHHHHHHHHHHHHHHhhH
Confidence 74 3467778888888877655
No 93
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=25.03 E-value=8.3e+02 Score=25.76 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhh
Q psy3495 120 LKLEELLEQMARCS 133 (266)
Q Consensus 120 ~rLEE~lEqLAKQh 133 (266)
.+|.+++.++....
T Consensus 262 ~rLk~~~~~~~~~~ 275 (546)
T PF07888_consen 262 QRLKETVVQLKQEE 275 (546)
T ss_pred HHHHHHHHHHHHhh
Confidence 46666666666555
No 94
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=24.94 E-value=4.7e+02 Score=23.34 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=64.7
Q ss_pred HHHHHhHHHHHHHHHhhhhcCCCc-------hhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Q psy3495 44 EIINKHGAALLRTLSELESCDNPQ-------ELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHER 116 (266)
Q Consensus 44 DLI~KhG~aLQRsL~ELEs~~~p~-------e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~Er 116 (266)
+-+.++...||+.+..+-..+.-. -...-...|++=.-+|+.-..+|++=...|-++-.....+|...+.+=.
T Consensus 156 ~~lL~~l~~lq~ll~~ll~~~~~~~~~~n~~~~~a~~lli~Ds~~lY~~i~~~i~~Ll~~~~~m~~~~a~~~~~i~~rf~ 235 (280)
T PF07651_consen 156 DDLLDQLPKLQRLLDRLLDCRPRGAALNNQCVQAAFRLLIKDSFQLYKFINEGIINLLERFFEMSKPDAEKLLGIYKRFA 235 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---GGG--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 445677777888888765532111 1112223348889999999999999999999988888889998888888
Q ss_pred HHHHHHHHHHHHHHhhhC
Q psy3495 117 DQRLKLEELLEQMARCST 134 (266)
Q Consensus 117 EQR~rLEE~lEqLAKQh~ 134 (266)
+|-.+|.+-|+. ++++.
T Consensus 236 ~q~~~L~~Fy~~-c~~~~ 252 (280)
T PF07651_consen 236 KQTEELKEFYEW-CKSLG 252 (280)
T ss_dssp HHHHHHHHHHHH-HHHCT
T ss_pred HHHHHHHHHHHH-HHhCC
Confidence 888888888877 44444
No 95
>KOG2923|consensus
Probab=24.84 E-value=30 Score=26.94 Aligned_cols=11 Identities=55% Similarity=1.032 Sum_probs=9.3
Q ss_pred CCCCcccccce
Q psy3495 193 HFPSCSLMTQV 203 (266)
Q Consensus 193 ~~~~~~~~~~~ 203 (266)
.-|||||+.+|
T Consensus 46 ~CpsCSL~I~V 56 (67)
T KOG2923|consen 46 RCPSCSLIIRV 56 (67)
T ss_pred cCCCceEEEEE
Confidence 36999999887
No 96
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=24.71 E-value=8.4e+02 Score=25.68 Aligned_cols=112 Identities=18% Similarity=0.207 Sum_probs=67.1
Q ss_pred HHHHHHHHHH-------HHhhhhHHHHHHHHHHhHHHHHHHHHhhhh-cCCCchhhhhhhhh---hhhhhHHHHhHHHHH
Q psy3495 23 VKLENIIKTL-------SVNLEQLQSYNEIINKHGAALLRTLSELES-CDNPQELQCQIKEI---NERATLFRITTNAMI 91 (266)
Q Consensus 23 ~el~~~lR~L-------seKL~DL~Tc~DLI~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V---~ERATLFKITS~AMI 91 (266)
.+|..+++.| ..++-||+--+--|.+++.+||--...=.- ..+-.++-.++..+ +=|++|=|--+.--+
T Consensus 313 maLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~l 392 (527)
T PF15066_consen 313 MALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTL 392 (527)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHH
Confidence 4454555444 467778888888888888888754331000 00000111222222 447888888888888
Q ss_pred HHHHHHHHHHHhc---hhhhHHHHHHHHHH----HHHHHHHHHHHHhhhC
Q psy3495 92 NSCGKYLEIAQTQ---GGKWQRMLQHERDQ----RLKLEELLEQMARCST 134 (266)
Q Consensus 92 nAc~efL~La~q~---e~kWqK~Lq~ErEQ----R~rLEE~lEqLAKQh~ 134 (266)
..+++-+.-+++| +++=+..||.|.++ -.+|||.|-+--.|-+
T Consensus 393 qnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKn 442 (527)
T PF15066_consen 393 QNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKN 442 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 8888877777643 55566777777763 5678888866544444
No 97
>COG5508 Uncharacterized conserved small protein [Function unknown]
Probab=24.61 E-value=34 Score=27.68 Aligned_cols=13 Identities=62% Similarity=0.956 Sum_probs=10.5
Q ss_pred CCCCCcccccCCC
Q psy3495 178 AGRGLLEPVRYPY 190 (266)
Q Consensus 178 ~~~~~~~~~~~~~ 190 (266)
.|||=|+|+||--
T Consensus 62 GGrgGlePtRyGD 74 (84)
T COG5508 62 GGRGGLEPTRYGD 74 (84)
T ss_pred CCCCCCCcccccc
Confidence 4888999999953
No 98
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=24.41 E-value=5.5e+02 Score=23.93 Aligned_cols=73 Identities=16% Similarity=0.341 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhHH-HHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHH
Q psy3495 23 VKLENIIKTLSVNLEQLQSYNEIINKHGA-ALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIA 101 (266)
Q Consensus 23 ~el~~~lR~LseKL~DL~Tc~DLI~KhG~-aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La 101 (266)
.-|..++..+..-|.+|..++.+|..|.. +|...|...-. +-++.+++.=--|-..|.-+=+|...|+.|-
T Consensus 61 e~i~~~L~kFs~~L~El~~~~~~L~~q~~~sl~~pL~~F~k--------edL~~~Ke~KK~FdK~Se~~d~Al~K~a~ls 132 (215)
T cd07631 61 EVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKE--------RDLKEILTLKEVFQIASNDHDAAINRYSRLS 132 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCC
Confidence 34778899999999999999999988863 45555554322 3345566666667777777777777777665
Q ss_pred Hh
Q psy3495 102 QT 103 (266)
Q Consensus 102 ~q 103 (266)
..
T Consensus 133 k~ 134 (215)
T cd07631 133 KR 134 (215)
T ss_pred CC
Confidence 43
No 99
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=23.87 E-value=2.5e+02 Score=24.85 Aligned_cols=32 Identities=13% Similarity=0.220 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy3495 105 GGKWQRMLQHERDQRLKLEELLEQMARCSTGP 136 (266)
Q Consensus 105 e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~~~ 136 (266)
.-.|..+|.-|.++.++.|..|.+||.|+...
T Consensus 107 a~~L~~KLkeEq~kv~~ME~~v~elas~m~~~ 138 (152)
T PF11500_consen 107 AMRLAEKLKEEQEKVAEMERHVTELASQMASK 138 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577889999999999999999999999744
No 100
>PRK01203 prefoldin subunit alpha; Provisional
Probab=23.85 E-value=3.1e+02 Score=23.56 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=32.3
Q ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3495 95 GKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARC 132 (266)
Q Consensus 95 ~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQ 132 (266)
.+=++++..+-++.++.++.=+.++.++++.|-+|+=|
T Consensus 86 e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~~~ 123 (130)
T PRK01203 86 ERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVYIT 123 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999999999999999999888733
No 101
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=23.39 E-value=5.5e+02 Score=23.11 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=22.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhh
Q psy3495 29 IKTLSVNLEQLQSYNEIINKHGAALLRTLSEL 60 (266)
Q Consensus 29 lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~EL 60 (266)
+-.+..|. |...+|+|.|.++.|+|.+..+
T Consensus 31 ve~~~l~~--lkqqqd~itk~veeLe~~~~q~ 60 (165)
T PF09602_consen 31 VEQQTLKK--LKQQQDWITKQVEELEKELKQF 60 (165)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443 8889999999999999998843
No 102
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.37 E-value=8.3e+02 Score=25.17 Aligned_cols=58 Identities=10% Similarity=0.013 Sum_probs=31.6
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 77 NERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 77 ~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
.+++.-.+..-...-......-....+.+..|....+....++..+++..++..++..
T Consensus 229 ~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 229 AQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555566667788888555555555555555555544443
No 103
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=23.03 E-value=65 Score=24.61 Aligned_cols=15 Identities=47% Similarity=0.753 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3495 114 HERDQRLKLEELLEQM 129 (266)
Q Consensus 114 ~ErEQR~rLEE~lEqL 129 (266)
+|+||| +|+|.-.+|
T Consensus 4 Se~E~r-~L~eiEr~L 18 (82)
T PF11239_consen 4 SEHEQR-RLEEIERQL 18 (82)
T ss_pred CHHHHH-HHHHHHHHH
Confidence 467777 788888777
No 104
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.80 E-value=5.4e+02 Score=22.76 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=12.5
Q ss_pred ccCcHHHHHHHHHHHHHhhhhHH
Q psy3495 18 EVDGEVKLENIIKTLSVNLEQLQ 40 (266)
Q Consensus 18 ~~~~~~el~~~lR~LseKL~DL~ 40 (266)
.++...++..-...|-.+|....
T Consensus 28 ~p~tR~dVi~L~e~Ld~~L~~~~ 50 (189)
T PF10211_consen 28 APATRQDVIQLQEWLDKMLQQRQ 50 (189)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhc
Confidence 44556666665555555555533
No 105
>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains.
Probab=22.48 E-value=55 Score=31.72 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHH
Q psy3495 88 NAMINSCGKYLEIAQTQGGKWQRMLQ 113 (266)
Q Consensus 88 ~AMInAc~efL~La~q~e~kWqK~Lq 113 (266)
||+||| ...++.+++|||++-
T Consensus 3 NAVVNA-----~vLk~Ms~~Wq~~FL 23 (294)
T PF04332_consen 3 NAVVNA-----TVLKRMSPFWQRRFL 23 (294)
T ss_pred chhhhH-----HHHHhhhHHHHHHHH
Confidence 788887 467888999999864
No 106
>KOG2307|consensus
Probab=22.00 E-value=5.8e+02 Score=27.56 Aligned_cols=123 Identities=15% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHH-HHHHHHHHhHHHHHHHHH-----------hhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHH
Q psy3495 25 LENIIKTLSVNLEQLQ-SYNEIINKHGAALLRTLS-----------ELESCDNPQELQCQIKEINERATLFRITTNAMIN 92 (266)
Q Consensus 25 l~~~lR~LseKL~DL~-Tc~DLI~KhG~aLQRsL~-----------ELEs~~~p~e~~~kik~V~ERATLFKITS~AMIn 92 (266)
+-..+-.+..||.++. -+.|..++-++-++++|+ ++=+ .+...-+++|++=--+||.|-.-+=.
T Consensus 494 l~elle~I~~kl~~~~k~~sdv~a~sle~~g~Sl~a~lp~i~ktIIe~ls----d~~~~~lrqv~dvprlyR~TnKevPt 569 (705)
T KOG2307|consen 494 LPELLESIWGKLHDITKVFSDVFAQSLEKHGRSLDALLPQIDKTIIEMLS----DVCHQELRQVSDVPRLYRWTNKEVPT 569 (705)
T ss_pred hHHHHHHHHhhccchhhhhHHHHHHHHHHhcccHHHHhhhHHHHHHHHHH----HHHHHHHHHHhccHHHHHhccCCCCC
Q ss_pred HHHHHHHHHH----------------hchhhhHHHHHHHHHHH------------HHHHHHHHHHHhhhCCCCCCCCCCC
Q psy3495 93 SCGKYLEIAQ----------------TQGGKWQRMLQHERDQR------------LKLEELLEQMARCSTGPPVHDSGPR 144 (266)
Q Consensus 93 Ac~efL~La~----------------q~e~kWqK~Lq~ErEQR------------~rLEE~lEqLAKQh~~~p~~~g~~~ 144 (266)
+|+-||+-|- .+-+.|-+....|.-++ ++-|+.+..|++--...+...||+
T Consensus 570 thSsYVv~aLrpvkal~eg~k~~L~q~~~eeil~gv~seit~~yye~vsDVl~sv~ktesSL~Rlkq~~~~~~g~s~gs- 648 (705)
T KOG2307|consen 570 THSSYVVTALRPVKALKEGLKCELEQPHTEEILRGVNSEITNYYYEKVSDVLDSVEKTESSLSRLKQKTTTDSGSSGGS- 648 (705)
T ss_pred cchHHHHHHHHHHHHHHHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC-
Q ss_pred CCCCCCCCCCccc
Q psy3495 145 LGGLPREEEAEDE 157 (266)
Q Consensus 145 ~~~~~egp~Sded 157 (266)
.+..||+|
T Consensus 649 -----s~~vSddD 656 (705)
T KOG2307|consen 649 -----SQTVSDDD 656 (705)
T ss_pred -----CCCcCcch
No 107
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=21.99 E-value=5.3e+02 Score=25.32 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=17.4
Q ss_pred HHHHhchhhhHHHHHHHHHHHHHH
Q psy3495 99 EIAQTQGGKWQRMLQHERDQRLKL 122 (266)
Q Consensus 99 ~La~q~e~kWqK~Lq~ErEQR~rL 122 (266)
.-++..-.+.|++|+.|.+||.-|
T Consensus 264 k~ireEN~rLqr~L~~E~erreal 287 (310)
T PF09755_consen 264 KEIREENRRLQRKLQREVERREAL 287 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888888888887544
No 108
>KOG0996|consensus
Probab=21.87 E-value=9.2e+02 Score=28.11 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=52.2
Q ss_pred HHHHHHhhhhHHHHHHHH-----H-HhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHH
Q psy3495 29 IKTLSVNLEQLQSYNEII-----N-KHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQ 102 (266)
Q Consensus 29 lR~LseKL~DL~Tc~DLI-----~-KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~ 102 (266)
++.+.+++++|++=.+=+ . .++..||+-++++-..... ---++++.|+++.-.+. +=|+-|.--+.-+.
T Consensus 860 l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q-~qk~kv~~~~~~~~~l~----~~i~k~~~~i~~s~ 934 (1293)
T KOG0996|consen 860 LKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQ-AQKDKVEKINEQLDKLE----ADIAKLTVAIKTSD 934 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhH-HhHHHHHHHHHHHHHHH----HHHHHhHHHHhcCc
Confidence 344445455544444333 2 5788899988877552211 11257777777777662 22333333444455
Q ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3495 103 TQGGKWQRMLQHERDQRLKLEELLEQMARCS 133 (266)
Q Consensus 103 q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh 133 (266)
.+..+.|+.++.=...+..+++.++.|..+.
T Consensus 935 ~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~ 965 (1293)
T KOG0996|consen 935 RNIAKAQKKLSELEREIEDTEKELDDLTEEL 965 (1293)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666655543334444444444444443
No 109
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=21.63 E-value=9.5e+02 Score=25.19 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=48.7
Q ss_pred HHHHHHhHHHHHHHHHhhhhc------CCCchhhhhhhhh--------hhhhhHHHHhHHHHHHHHHHHHHHHHhchhhh
Q psy3495 43 NEIINKHGAALLRTLSELESC------DNPQELQCQIKEI--------NERATLFRITTNAMINSCGKYLEIAQTQGGKW 108 (266)
Q Consensus 43 ~DLI~KhG~aLQRsL~ELEs~------~~p~e~~~kik~V--------~ERATLFKITS~AMInAc~efL~La~q~e~kW 108 (266)
-..|.+||..|-+.+-.++.. .......+++... .-+++.||...-++.-.+-=++-+....- +
T Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Rl~l~~~~~~~~~~~~~l~~~~--~ 263 (828)
T PRK13837 186 VRALLRHGRMILRLLPRVDDTVRVLQASDTLASAEALRRAILEAYSLAQARARRVRLFLGAVSVALLGYIISLVLRL--R 263 (828)
T ss_pred HHHHHHhhHHHHhhccchhHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 347889999999988866552 1112223444332 33678888766655444433333222111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy3495 109 QRMLQHERDQRLKLEELLEQMARCSTG 135 (266)
Q Consensus 109 qK~Lq~ErEQR~rLEE~lEqLAKQh~~ 135 (266)
.-..+..+|.++|+.+..+......
T Consensus 264 --~~~~~l~~r~~~e~~l~~l~~~~~~ 288 (828)
T PRK13837 264 --ARTRVLRRRAAFEEVIAAISRCFEA 288 (828)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1223445677777878777666653
No 110
>KOG0982|consensus
Probab=21.63 E-value=9.4e+02 Score=25.14 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhhhHHHHH----HHHHHhHHHHHHHHHhhhh
Q psy3495 26 ENIIKTLSVNLEQLQSYN----EIINKHGAALLRTLSELES 62 (266)
Q Consensus 26 ~~~lR~LseKL~DL~Tc~----DLI~KhG~aLQRsL~ELEs 62 (266)
+-.++.|.+...+|++|- -++-|+-..+||..+.|+.
T Consensus 303 qmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~ 343 (502)
T KOG0982|consen 303 QMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEA 343 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 335555555555555543 3455666667777777665
No 111
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=21.25 E-value=33 Score=31.98 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=24.6
Q ss_pred ccCcccccccccccccCCCcCCCCCCCcccccCCCCCCCCCcccccce
Q psy3495 156 DEEDSVFYDANEVMTENGGLDPAGRGLLEPVRYPYSPHFPSCSLMTQV 203 (266)
Q Consensus 156 edDD~EFFDAvE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (266)
.....+|.|+++....... -|-+=|.|.||.|.+|.+.
T Consensus 130 i~~~e~~l~~ie~~~~~~~----------VVVHiY~~~~~~C~~mn~~ 167 (265)
T PF02114_consen 130 IDSGEEFLDAIEKESKSTW----------VVVHIYEPGFPRCEIMNSC 167 (265)
T ss_dssp --SHHHHHHHCCTSSTT-E----------EEEEEE-TTSCCHHHHHHH
T ss_pred ccChhhHHHHHhccCCCcE----------EEEEEEeCCCchHHHHHHH
Confidence 3333389999986543322 2667899999999998764
No 112
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=21.11 E-value=40 Score=23.75 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=15.7
Q ss_pred HHhchhhhHHHHHHHHHHH
Q psy3495 101 AQTQGGKWQRMLQHERDQR 119 (266)
Q Consensus 101 a~q~e~kWqK~Lq~ErEQR 119 (266)
+..|+++|++.|+..+++|
T Consensus 13 ~~~Q~eRR~~~Le~QK~kR 31 (40)
T PF11538_consen 13 ALDQEERRREFLERQKNKR 31 (40)
T ss_dssp SCSHHHHHHHHHHHHHSHH
T ss_pred hHhHHHHHHHHHHHHHHHh
Confidence 3578999999999887777
No 113
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=20.99 E-value=3.3e+02 Score=19.58 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=28.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhh
Q psy3495 28 IIKTLSVNLEQLQSYNEIINKHGAALLRTLSELES 62 (266)
Q Consensus 28 ~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs 62 (266)
.+..|..++..|..-++.|.+....|..-+..|..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56678888888888888888888888887776643
Done!