Query psy3495
Match_columns 266
No_of_seqs 80 out of 82
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 18:09:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rr3_B OSBP, oxysterol-binding 97.6 3.3E-05 1.1E-09 54.4 2.8 24 146-169 5-28 (47)
2 4hpq_C ATG17, KLTH0D15642P; au 91.3 4 0.00014 39.1 13.8 116 18-134 240-363 (413)
3 2w6b_A RHO guanine nucleotide 90.7 0.88 3E-05 33.1 6.7 45 90-134 11-55 (56)
4 3l4f_A RHO guanine nucleotide 84.7 1.9 6.5E-05 31.9 5.4 45 91-135 9-53 (61)
5 3oja_B Anopheles plasmodium-re 75.7 37 0.0013 31.6 12.3 38 96-133 537-574 (597)
6 2efr_A General control protein 73.5 33 0.0011 28.8 10.3 41 22-62 72-112 (155)
7 2v4h_A NF-kappa-B essential mo 71.2 40 0.0014 27.3 9.9 43 92-134 58-100 (110)
8 1nkp_A C-MYC, MYC proto-oncoge 49.9 35 0.0012 25.6 5.7 46 84-129 40-85 (88)
9 1sjj_A Actinin; 3-helix bundle 45.8 2.3E+02 0.0078 27.8 13.3 52 76-127 530-599 (863)
10 2lwd_A Probable ATP-dependent 44.9 44 0.0015 25.9 5.7 72 35-113 6-82 (100)
11 2zdi_C Prefoldin subunit alpha 44.0 98 0.0034 24.7 7.8 109 23-134 12-143 (151)
12 1x9f_D Globin C, hemoglobin ch 43.8 50 0.0017 25.3 5.9 68 46-114 59-134 (140)
13 3jsv_C NF-kappa-B essential mo 43.7 1.2E+02 0.004 23.9 8.2 43 92-134 36-78 (94)
14 4fla_A Regulation of nuclear P 42.2 1.1E+02 0.0038 25.3 8.0 81 49-133 23-112 (152)
15 4h63_V Mediator of RNA polymer 41.6 1.4E+02 0.005 24.4 9.1 74 30-108 7-80 (135)
16 3pt8_B Hemoglobin III; oxygen 40.5 36 0.0012 26.4 4.6 70 46-115 63-140 (152)
17 1sct_A Hemoglobin II (carbonmo 39.9 49 0.0017 25.8 5.3 69 46-114 67-145 (150)
18 2dc3_A Cytoglobin; myoglobin, 39.6 1.4E+02 0.0047 24.5 8.2 84 47-133 82-176 (193)
19 1yhu_B Giant hemoglobins B cha 39.5 58 0.002 24.9 5.6 69 45-114 60-137 (144)
20 3ghg_A Fibrinogen alpha chain; 39.2 2E+02 0.0069 28.9 10.5 33 24-56 61-93 (562)
21 4hrt_B Hemoglobin B chain; oxy 39.0 33 0.0011 26.9 4.2 72 43-114 66-147 (152)
22 2nx6_A Nematocyst outer WALL a 38.6 9.8 0.00033 23.8 0.8 10 191-200 5-14 (27)
23 1x9f_B Erythrocruorin, globin 38.5 56 0.0019 25.3 5.4 68 46-114 61-136 (145)
24 1x9f_A Globin IV, extracellula 37.9 45 0.0015 26.2 4.8 68 45-114 65-141 (151)
25 1fxk_C Protein (prefoldin); ar 37.8 1.4E+02 0.0047 23.0 9.5 109 24-132 5-131 (133)
26 3edv_A Spectrin beta chain, br 37.4 1.3E+02 0.0045 25.4 8.0 23 104-126 197-219 (323)
27 1q1f_A Neuroglobin; globin fol 37.3 79 0.0027 24.0 6.1 69 46-114 61-139 (151)
28 4b4y_A Neuroglobin; transport 37.2 57 0.002 25.5 5.3 69 46-114 68-147 (154)
29 3ubc_A Hemoglobin-like flavopr 37.1 79 0.0027 23.8 5.9 69 46-114 46-124 (131)
30 3zym_A Phosphatidylinositol-bi 36.8 2.4E+02 0.0081 25.4 11.3 88 46-134 171-265 (310)
31 3mq9_A Bone marrow stromal ant 36.5 2.4E+02 0.0084 25.5 13.6 24 39-62 395-418 (471)
32 2dfs_A Myosin-5A; myosin-V, in 36.4 1.3E+02 0.0044 31.8 9.2 16 47-62 959-974 (1080)
33 1hx8_A Synapse-enriched clathr 36.1 1.4E+02 0.0048 26.5 8.3 89 45-134 177-272 (299)
34 3uul_A Utrophin; spectrin repe 35.3 1.2E+02 0.0042 21.7 12.2 28 105-132 91-118 (118)
35 1hci_A Alpha-actinin 2; triple 34.7 1.7E+02 0.006 26.1 8.7 24 105-128 217-240 (476)
36 2vyw_A Hemoglobin; trematode, 34.1 67 0.0023 25.2 5.3 68 46-114 64-139 (148)
37 1sct_B Hemoglobin II (carbonmo 33.5 75 0.0025 24.6 5.4 69 46-114 68-146 (151)
38 1h97_A Globin-3; HET: HEM; 1.1 33.2 81 0.0028 24.7 5.6 68 46-114 63-138 (147)
39 2c0k_A Hemoglobin; oxygen tran 33.0 77 0.0026 24.7 5.4 69 46-114 59-138 (151)
40 3ol1_A Vimentin; structural ge 32.9 1.8E+02 0.006 22.8 10.2 42 20-61 13-54 (119)
41 3okq_A BUD site selection prot 32.6 2.2E+02 0.0075 23.8 10.8 70 39-117 19-93 (141)
42 1it2_A Hemoglobin; hagfish, de 32.0 64 0.0022 25.2 4.8 61 46-114 68-137 (146)
43 1k4u_P Phagocyte NADPH oxidase 31.9 16 0.00056 23.9 1.1 12 224-235 2-13 (32)
44 1sjj_A Actinin; 3-helix bundle 31.7 3.8E+02 0.013 26.3 13.8 24 105-128 456-479 (863)
45 3g46_A Globin-1; oxygen transp 31.0 61 0.0021 25.2 4.5 68 46-114 66-141 (146)
46 4akv_A Sorting nexin-33; trans 30.8 2.6E+02 0.0087 25.7 9.3 27 32-58 284-310 (386)
47 2v71_A Nuclear distribution pr 30.3 1.4E+02 0.0047 25.9 7.0 23 112-134 149-171 (189)
48 2oqq_A Transcription factor HY 30.0 81 0.0028 21.7 4.3 27 29-55 5-31 (42)
49 1yhu_A Hemoglobin A1 chain; gl 29.8 88 0.003 24.3 5.3 69 45-114 58-134 (145)
50 1yhu_D Hemoglobin B2 chain; gl 29.3 64 0.0022 25.1 4.4 67 46-114 63-138 (149)
51 1nlw_A MAD protein, MAX dimeri 29.3 1.7E+02 0.0059 21.5 8.2 29 85-113 36-64 (80)
52 2iak_A Bullous pemphigoid anti 29.3 2.3E+02 0.008 23.1 9.2 95 23-134 30-130 (224)
53 1kd8_A GABH AIV, GCN4 acid bas 29.2 1.1E+02 0.0038 20.4 4.8 31 30-60 4-34 (36)
54 1jf3_A Monomer hemoglobin comp 29.2 1.2E+02 0.0041 23.1 5.8 71 45-115 54-137 (147)
55 3lb2_A Dehaloperoxidase A; glo 29.1 1.1E+02 0.0039 24.0 5.8 67 46-114 52-126 (137)
56 2d9d_A BAG family molecular ch 29.1 1.1E+02 0.0039 23.9 5.6 72 21-101 11-82 (89)
57 1x46_A Globin chain, hemoglobi 29.0 87 0.003 24.1 5.1 69 46-114 61-141 (150)
58 4etp_B Spindle POLE BODY-assoc 28.9 69 0.0024 30.2 5.1 24 111-134 39-62 (333)
59 1yhu_C Hemoglobin B1A chain; g 28.9 65 0.0022 25.1 4.3 67 46-114 64-139 (148)
60 2hy6_A General control protein 28.5 94 0.0032 20.5 4.3 30 30-59 4-33 (34)
61 1hlb_A Hemoglobin (deoxy); oxy 27.8 1.4E+02 0.0046 23.2 6.0 69 46-114 71-148 (158)
62 1b0b_A Hemoglobin; hemoprotein 27.8 60 0.002 24.9 3.9 65 46-114 61-133 (142)
63 2bnl_A Modulator protein RSBR; 27.6 56 0.0019 27.1 3.9 59 41-113 6-64 (136)
64 2zs0_D Extracellular giant hem 27.1 1.1E+02 0.0037 24.1 5.4 68 45-114 60-136 (145)
65 1kd8_B GABH BLL, GCN4 acid bas 26.8 1.3E+02 0.0045 20.0 4.8 31 29-59 3-33 (36)
66 1eca_A Erythrocruorin (AQUO Me 26.8 1.3E+02 0.0043 23.3 5.7 68 44-114 53-127 (136)
67 2zqm_A Prefoldin beta subunit 26.7 2E+02 0.0067 21.3 9.7 100 25-129 11-110 (117)
68 3zyl_A Phosphatidylinositol-bi 25.8 2.5E+02 0.0086 24.8 8.1 82 45-126 170-258 (271)
69 1deq_A Fibrinogen (alpha chain 25.4 4.6E+02 0.016 25.2 11.0 68 23-92 63-134 (390)
70 1cqx_A Flavohemoprotein; globi 24.7 2.4E+02 0.0083 24.9 7.8 83 47-129 51-144 (403)
71 1ith_A Hemoglobin (cyano Met); 24.2 1.4E+02 0.0048 22.7 5.5 67 46-114 61-135 (141)
72 2bk9_A CG9734-PA; oxygen trans 24.0 98 0.0033 24.0 4.5 35 79-113 102-136 (153)
73 1m1j_C Fibrinogen gamma chain; 23.9 4.7E+02 0.016 24.8 11.1 34 25-58 36-69 (409)
74 4hrt_A Globin-2 A chain; oxyge 23.8 1.4E+02 0.0048 23.3 5.5 36 79-114 108-145 (150)
75 2pnv_A Small conductance calci 23.7 93 0.0032 21.2 3.7 28 34-61 9-36 (43)
76 2zs0_B Extracellular giant hem 23.7 1.3E+02 0.0046 23.0 5.2 68 46-114 59-135 (142)
77 1s35_A Beta-I spectrin, spectr 23.6 2.7E+02 0.0093 21.9 10.1 27 101-127 82-108 (214)
78 3ol1_A Vimentin; structural ge 23.5 1.3E+02 0.0044 23.6 5.1 25 108-132 74-98 (119)
79 3cvf_A Homer-3, homer protein 23.4 1.2E+02 0.0039 23.1 4.6 17 22-38 22-38 (79)
80 2lhb_A Hemoglobin V (cyano Met 23.3 1.6E+02 0.0056 22.7 5.7 61 47-114 71-140 (149)
81 1u4q_A Spectrin alpha chain, b 23.3 3.3E+02 0.011 22.7 10.2 23 105-127 88-110 (322)
82 2dfs_A Myosin-5A; myosin-V, in 23.2 6.8E+02 0.023 26.4 13.6 15 118-132 1064-1078(1080)
83 1nkp_B MAX protein, MYC proto- 23.1 99 0.0034 22.4 4.1 29 84-112 35-63 (83)
84 1wmu_A Hemoglobin D alpha chai 22.8 2.5E+02 0.0085 21.4 6.6 67 46-114 55-131 (141)
85 3gpv_A Transcriptional regulat 22.5 2.4E+02 0.0084 22.3 6.7 9 93-101 78-86 (148)
86 3kin_B Kinesin heavy chain; mo 22.4 1E+02 0.0034 24.2 4.3 30 104-133 83-112 (117)
87 3swk_A Vimentin; cytoskeleton, 22.1 1.4E+02 0.0047 22.4 4.8 34 101-134 26-59 (86)
88 3fn1_B NEDD8-conjugating enzym 21.4 66 0.0023 26.0 3.2 19 184-204 69-87 (167)
89 1m1j_B Fibrinogen beta chain; 21.3 5.7E+02 0.019 24.8 12.3 16 25-40 98-113 (464)
90 1ylm_A Hypothetical protein BS 20.6 2.8E+02 0.0096 21.3 6.6 53 44-100 7-59 (144)
91 3cve_A Homer protein homolog 1 20.5 93 0.0032 23.3 3.5 12 25-36 19-30 (72)
92 1g73_A SMAC/diablo, second mit 20.2 3.1E+02 0.011 23.5 7.1 48 79-130 30-96 (162)
No 1
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=97.59 E-value=3.3e-05 Score=54.37 Aligned_cols=24 Identities=17% Similarity=0.558 Sum_probs=20.3
Q ss_pred CCCCCCCCCcccCccccccccccc
Q psy3495 146 GGLPREEEAEDEEDSVFYDANEVM 169 (266)
Q Consensus 146 ~~~~egp~SdedDD~EFFDAvE~~ 169 (266)
....+|+.|++|||+|||||+|.-
T Consensus 5 ~~~~KGe~SdEDed~EfFDA~efI 28 (47)
T 2rr3_B 5 DHWGKGDMSDEDDENEFFDAPEII 28 (47)
T ss_dssp SSCCCCCSCCCCCSSCCBCCCSSC
T ss_pred ccccccccccccccccccccccee
Confidence 345699999999999999998854
No 2
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=91.28 E-value=4 Score=39.11 Aligned_cols=116 Identities=17% Similarity=0.162 Sum_probs=72.5
Q ss_pred ccCcHHHHHHHHHHHHHhhhhHHHHHHHHHHh-------HHHHHHHHHhhhh-cCCCchhhhhhhhhhhhhhHHHHhHHH
Q psy3495 18 EVDGEVKLENIIKTLSVNLEQLQSYNEIINKH-------GAALLRTLSELES-CDNPQELQCQIKEINERATLFRITTNA 89 (266)
Q Consensus 18 ~~~~~~el~~~lR~LseKL~DL~Tc~DLI~Kh-------G~aLQRsL~ELEs-~~~p~e~~~kik~V~ERATLFKITS~A 89 (266)
-..|..++-.+++.|.+.+.++.....-+.+. .+.|+..+..+-. ...-.+...-++.|.++...||-+...
T Consensus 240 v~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~e~l~i~~~i~e~l~~fk~~~~~ 319 (413)
T 4hpq_C 240 VERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELRKHEEYISVFEGISALIQKFKASCLE 319 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777766655553322222 2222222222211 000011123345567777789988888
Q ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 90 MINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 90 MInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
-+....+.-++-.+-...... |-.|..||+.-++.++..+++.+
T Consensus 320 ~~~~~~~L~~~Y~~f~~aY~~-lL~Ev~RRr~~~~~~~~i~~~~~ 363 (413)
T 4hpq_C 320 DIRQTRNLLDFYANFERSYHN-LLKEVKRRKETAAKLSQILKSCE 363 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877777777888887 77899999998888888877665
No 3
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=90.66 E-value=0.88 Score=33.15 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 90 MINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 90 MInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
.+-|+.+=|.-.++..++.+|.|..|+.-|++||..+..+-++++
T Consensus 11 tVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~~ 55 (56)
T 2w6b_A 11 TVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 55 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455888999999999999999999999999999999999988875
No 4
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=84.73 E-value=1.9 Score=31.86 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy3495 91 INSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCSTG 135 (266)
Q Consensus 91 InAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~~ 135 (266)
+=++.+=+.-.++..++-++.+.+|...|++||..+..+.+|.|.
T Consensus 9 VYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~ 53 (61)
T 3l4f_A 9 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMND 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 446677777788888999999999999999999999999999874
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.70 E-value=37 Score=31.65 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=26.6
Q ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3495 96 KYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCS 133 (266)
Q Consensus 96 efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh 133 (266)
+.++-.+++-.+|.++++..+++..++.+....+.+++
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 34444457777899999888888887777765555444
No 6
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=73.45 E-value=33 Score=28.84 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhh
Q psy3495 22 EVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELES 62 (266)
Q Consensus 22 ~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs 62 (266)
.+.....+|.|..||.+.+|..+.--+.+.-||+.+++|+.
T Consensus 72 Ed~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd 112 (155)
T 2efr_A 72 EDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED 112 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999999986
No 7
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=71.21 E-value=40 Score=27.31 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 92 NSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 92 nAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
++..+=+.+.++|-+-++.-+..||.-|.++.+..++|+.|..
T Consensus 58 ~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~ 100 (110)
T 2v4h_A 58 KIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 100 (110)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHH
Confidence 3334557888889999999999999999999888888887764
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=49.87 E-value=35 Score=25.64 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=35.8
Q ss_pred HHhHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3495 84 RITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQM 129 (266)
Q Consensus 84 KITS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqL 129 (266)
|.+-.++|....+|+..++.+..+....+..-+.+...|...+++|
T Consensus 40 K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 40 KAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566788889999999999988887766666666777777777766
No 9
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=45.81 E-value=2.3e+02 Score=27.82 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=34.9
Q ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHhc------------------hhhhHHHHHHHHHHHHHHHHHHH
Q psy3495 76 INERATLFRITTNAMINSCGKYLEIAQTQ------------------GGKWQRMLQHERDQRLKLEELLE 127 (266)
Q Consensus 76 V~ERATLFKITS~AMInAc~efL~La~q~------------------e~kWqK~Lq~ErEQR~rLEE~lE 127 (266)
+...+.-++..-.++...+.....+.+.. ..+|..-.+.=.+||.+|++.+.
T Consensus 530 ~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~rw~~L~~~~~~R~~~L~~~l~ 599 (863)
T 1sjj_A 530 FKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHA 599 (863)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHGGGHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445544555566666666665433 37899988888899999999774
No 10
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=44.87 E-value=44 Score=25.91 Aligned_cols=72 Identities=15% Similarity=0.346 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhh----hhhhhhhHHHHhHHHHHHHHHHHHHHHHh-chhhhH
Q psy3495 35 NLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIK----EINERATLFRITTNAMINSCGKYLEIAQT-QGGKWQ 109 (266)
Q Consensus 35 KL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik----~V~ERATLFKITS~AMInAc~efL~La~q-~e~kWq 109 (266)
|+++++-++.+|.+....|.+.+. |.+..+.+. .=..+-+.=+.++.|.+.|+..+++-+.. +.+-|=
T Consensus 6 ~~e~~ee~r~lL~~~~p~l~~~I~-------p~~IL~~L~~~L~~~d~E~I~a~~~~~G~~~aa~~LL~~L~r~~~~gWf 78 (100)
T 2lwd_A 6 KIEKLEEYRLLLKRLQPEFKTRII-------PTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWP 78 (100)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHCC-------TTTTHHHHTTTSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCTHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHhhcC-------HHHHHHHHHHHCCHHHHHHHHHHHHccChHHHHHHHHHHHHhcCcCCcH
Confidence 677789999999887777766543 222222221 11224444566788999999999996654 566798
Q ss_pred HHHH
Q psy3495 110 RMLQ 113 (266)
Q Consensus 110 K~Lq 113 (266)
+.|.
T Consensus 79 ~~fl 82 (100)
T 2lwd_A 79 KTLK 82 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 11
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=44.01 E-value=98 Score=24.66 Aligned_cols=109 Identities=15% Similarity=0.096 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHH---HHhHHHHHHHHHhhhhcC-CCchhhhhhhhhhh-------------------h
Q psy3495 23 VKLENIIKTLSVNLEQLQSYNEII---NKHGAALLRTLSELESCD-NPQELQCQIKEINE-------------------R 79 (266)
Q Consensus 23 ~el~~~lR~LseKL~DL~Tc~DLI---~KhG~aLQRsL~ELEs~~-~p~e~~~kik~V~E-------------------R 79 (266)
..+......|...+..|..-..-+ ..+..++.++++.|+.+. .+.+ -+..+.. -
T Consensus 12 ~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~---ilvplg~~~yv~g~i~~~~~V~v~lG~ 88 (151)
T 2zdi_C 12 EKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPE---ILVPIGAGSFLKGVIVDKNNAIVSVGS 88 (151)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCE---EEEECSSSCEEEEECSCTTEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCce---EEEEcCCCeEEEEEECCCCEEEEEeCC
Confidence 344455666777777788888888 888888888888887654 2111 1112111 1
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 80 ATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 80 ATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
=.+-..|..-.+.-+..=++.+..+-+++++.++.=+++-..+++.++++-.+..
T Consensus 89 g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~ 143 (151)
T 2zdi_C 89 GYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQS 143 (151)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred CeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233445566677788888899999999999999999999999999998876654
No 12
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=43.80 E-value=50 Score=25.30 Aligned_cols=68 Identities=21% Similarity=0.371 Sum_probs=45.2
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ 114 (266)
+..|+..|..+|..+-. +.++..+...++.+.. ...-|++-..++|.++.+.+--.-+. ..|.|.+..
T Consensus 59 ~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l~~~lg~~~t~-~AW~~~~~~ 134 (140)
T 1x9f_D 59 FGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKVQHVERNLKPEFFDIFLKHLLHVLGDRLGTHFDF-GAWHDCVDQ 134 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHGGGCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHH
Confidence 56677777777775544 3344444444444422 55679999999999999987643333 889998864
No 13
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=43.66 E-value=1.2e+02 Score=23.92 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 92 NSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 92 nAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
++..+=+.+.++|-.-+..-+..||.-|.++.+..++|..|..
T Consensus 36 ~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~ 78 (94)
T 3jsv_C 36 KIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 78 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444667777888888888899999988887777777766664
No 14
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=42.19 E-value=1.1e+02 Score=25.34 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhhcCCCchhhh-----hhhhh----hhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q psy3495 49 HGAALLRTLSELESCDNPQELQC-----QIKEI----NERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQR 119 (266)
Q Consensus 49 hG~aLQRsL~ELEs~~~p~e~~~-----kik~V----~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR 119 (266)
..+.|-+.|.+|+. .-.++ +|-.+ .+-..+=+|+..+=...+..=++-+...=....++|..|.+.|
T Consensus 23 ~~~elik~L~~le~----sassDa~vrq~Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR 98 (152)
T 4fla_A 23 LTEELIKALQDLEN----AASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDR 98 (152)
T ss_dssp CHHHHHHHHHHHHH----HHHHHHHHHHHHHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhc----cccchHHHHHHHHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhh
Q psy3495 120 LKLEELLEQMARCS 133 (266)
Q Consensus 120 ~rLEE~lEqLAKQh 133 (266)
..|.++++..-..+
T Consensus 99 ~~L~~~L~~~~~~~ 112 (152)
T 4fla_A 99 RQLARMLVEYTQNQ 112 (152)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
No 15
>4h63_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=41.57 E-value=1.4e+02 Score=24.35 Aligned_cols=74 Identities=11% Similarity=0.215 Sum_probs=44.4
Q ss_pred HHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhh
Q psy3495 30 KTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKW 108 (266)
Q Consensus 30 R~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kW 108 (266)
|.|..| =.+++.-|...+..|...|.+|-.+..-... ++.. +.-++-...+-+.+||.+|.+.|.|...--+-|
T Consensus 7 ~~l~~k---~~~l~~rid~~v~~ll~~f~~iv~lA~v~~~-~~~~-~A~e~~~~~~~~~~~vra~e~LL~L~r~lKe~w 80 (135)
T 4h63_V 7 RQLVQR---TNTLNSSIDNATLTILSRFQDILDIAINEGK-DKYT-VAPEVYQIECHTVSMVRAVEQLLDVSRQIKSYW 80 (135)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTC-CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 3445666666666777777776653321111 1211 122445566778899999999999997655555
No 16
>3pt8_B Hemoglobin III; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} PDB: 3pt7_B*
Probab=40.55 E-value=36 Score=26.43 Aligned_cols=70 Identities=9% Similarity=0.198 Sum_probs=47.4
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHE 115 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~E 115 (266)
+..|+..|..+|..+-. +.++..+...+..+.. ...-|++-..++|.++.+.+.+...-...|.|.+..=
T Consensus 63 ~~~h~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~ll~~l~~~lg~t~e~~~AW~~~~~~v 140 (152)
T 3pt8_B 63 MKAQSLVFCNGMSSFVDNLDDHEVLVVLLQKMAKLHFNRGIRIKELRDGYGTLLRYLEDHCHVEGSTKNAWEDFIAYI 140 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 56788888888876544 3444444444444421 4557899999999999998764455577899988743
No 17
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=39.93 E-value=49 Score=25.75 Aligned_cols=69 Identities=16% Similarity=0.377 Sum_probs=45.2
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHH--HHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLE--IAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~--La~q~e~kWqK~Lq~ 114 (266)
+..|+..|..+|..+-. +.++..+...++.+.. ...-|++-..++|.++.+.+- +...-...|.|.+..
T Consensus 67 ~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~ 145 (150)
T 1sct_A 67 LRGHAITLTYALNNFVDSLDDPSRLKCVVEKFAVNHINRKISGDAFGAIVEPMKETLKARMGNYYSDDVAGAWAALVGV 145 (150)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCCHHHHGGGHHHHHHHHHHHHGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 34677777777775544 2344444444444422 446788999999999999875 444556789988763
No 18
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=39.59 E-value=1.4e+02 Score=24.53 Aligned_cols=84 Identities=8% Similarity=0.281 Sum_probs=53.5
Q ss_pred HHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh--------hhhHHHHhHHHHHHHHHHHHH--HHHhchhhhHHHHHHH
Q psy3495 47 NKHGAALLRTLSELES-CDNPQELQCQIKEINE--------RATLFRITTNAMINSCGKYLE--IAQTQGGKWQRMLQHE 115 (266)
Q Consensus 47 ~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E--------RATLFKITS~AMInAc~efL~--La~q~e~kWqK~Lq~E 115 (266)
..|+..|..+|..+-. +.++..+...++.+.. ...-|++-..++|.++.+.+- +...-...|.|.|..=
T Consensus 82 ~~h~~~v~~al~~~v~~Ldd~~~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~v 161 (193)
T 2dc3_A 82 RKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLI 161 (193)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 4688888888886655 3444445555555522 335699999999999998763 4444567899999855
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy3495 116 RDQRLKLEELLEQMARCS 133 (266)
Q Consensus 116 rEQR~rLEE~lEqLAKQh 133 (266)
.+- |.+.|++.+-+.
T Consensus 162 a~~---l~~~y~~~~~~~ 176 (193)
T 2dc3_A 162 YSH---VTAAYKEVGWVQ 176 (193)
T ss_dssp HHH---HHHHHHHTTCCC
T ss_pred HHH---HHHHHHHhhhcc
Confidence 442 234454443333
No 19
>1yhu_B Giant hemoglobins B chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=39.46 E-value=58 Score=24.93 Aligned_cols=69 Identities=14% Similarity=0.243 Sum_probs=44.4
Q ss_pred HHHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHHH-HHhchhhhHHHHHH
Q psy3495 45 IINKHGAALLRTLSELES-CDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLEI-AQTQGGKWQRMLQH 114 (266)
Q Consensus 45 LI~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~L-a~q~e~kWqK~Lq~ 114 (266)
-+.+|+..|..+|..+-. +.++..+...++.+.. ...-|++-..++|.++.+.+-- .-+ .+.|.|.|..
T Consensus 60 ~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~ll~~l~~~lg~~~~t-~~AW~~~~~~ 137 (144)
T 1yhu_B 60 AFRAHATRVLGGLDMCIALLDDEPVLNTQLAHLAKQHETRGVEAAHYDTVNHAVMMGVENVIGSEVFD-QDAWKPCLNV 137 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHCSSSCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHH
Confidence 456777777777775544 3344444445444421 4578999999999999998821 111 2589998874
No 20
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=39.20 E-value=2e+02 Score=28.88 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHH
Q psy3495 24 KLENIIKTLSVNLEQLQSYNEIINKHGAALLRT 56 (266)
Q Consensus 24 el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRs 56 (266)
.+.+.|..|+.+|+||+.-+.=+..+...+..+
T Consensus 61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~ 93 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEI 93 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 455667777777777765554444444333333
No 21
>4hrt_B Hemoglobin B chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_B*
Probab=39.05 E-value=33 Score=26.93 Aligned_cols=72 Identities=14% Similarity=0.293 Sum_probs=45.3
Q ss_pred HHHHHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHH--HHHHhchhhhHHHH
Q psy3495 43 NEIINKHGAALLRTLSELES-CDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYL--EIAQTQGGKWQRML 112 (266)
Q Consensus 43 ~DLI~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL--~La~q~e~kWqK~L 112 (266)
+.-+..||..|..+|...-. +.++..+...+..+.. ...-|++-..++|.++.+.+ .+-..-...|.|.+
T Consensus 66 ~~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~ 145 (152)
T 4hrt_B 66 NSKLRGHSITLMYALQNFVDALDDVERLKCVVEKFAVNHINRQISADEFGEIVGPLRQTLKARMGNYFDEDTVAAWASLV 145 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHC-CCCHHHHGGGHHHHHHHHHHHHGGGCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 34455666666666665433 3333334444444421 46778999999999999988 34455567899887
Q ss_pred HH
Q psy3495 113 QH 114 (266)
Q Consensus 113 q~ 114 (266)
..
T Consensus 146 ~~ 147 (152)
T 4hrt_B 146 AV 147 (152)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 22
>2nx6_A Nematocyst outer WALL antigen; disulfide rich, turns, structural protein; NMR {Hydra vulgaris}
Probab=38.64 E-value=9.8 Score=23.78 Aligned_cols=10 Identities=60% Similarity=1.188 Sum_probs=7.7
Q ss_pred CCCCCCcccc
Q psy3495 191 SPHFPSCSLM 200 (266)
Q Consensus 191 ~~~~~~~~~~ 200 (266)
-|.|||||--
T Consensus 5 cpqfpscsps 14 (27)
T 2nx6_A 5 CPQFPSCSPS 14 (27)
T ss_dssp STTCTTCCGG
T ss_pred CCCCCCCCCc
Confidence 4889999853
No 23
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=38.48 E-value=56 Score=25.28 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=45.9
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ 114 (266)
+..|+..|..+|..+-. +.++..+...++.+.. ...-|++-..++|.++.+.+--.-+. ..|.|.+..
T Consensus 61 ~~~h~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l~~~lg~~~t~-~AW~~~~~~ 136 (145)
T 1x9f_B 61 FIAHADRVLGGLDIAISTLDQPATLKEELDHLQVQHEGRKIPDNYFDAFKTAILHVVAAQLGRCYDR-EAWDACIDH 136 (145)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHTTSCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHH
Confidence 56777777777776554 3444445445555522 55679999999999999987633333 789998873
No 24
>1x9f_A Globin IV, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_A*
Probab=37.91 E-value=45 Score=26.20 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=46.7
Q ss_pred HHHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh--------hhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q psy3495 45 IINKHGAALLRTLSELES-CDNPQELQCQIKEINE--------RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH 114 (266)
Q Consensus 45 LI~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E--------RATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ 114 (266)
-+..|+..+..+|...-. +.++..+...++.+.. ...-|++-..++|.++.+.+- .-+.+ .|.|.|..
T Consensus 65 ~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~~lgV~p~~f~~~~~~ll~~l~~~lg-~~t~e-AW~k~~~~ 141 (151)
T 1x9f_A 65 EFKSHLVRVANGLKLLINLLDDTLVLQSHLGHLADQHIQRKGVTKEYFRGIGEAFARVLPQVLS-CFNVD-AWNRCFHR 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHCS-SCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHcC-CCCHH-HHHHHHHH
Confidence 356788888888876544 3444445555555521 256799999999999999887 54544 99998873
No 25
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=37.80 E-value=1.4e+02 Score=23.02 Aligned_cols=109 Identities=13% Similarity=0.094 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCC--Cchh----h------hhhhh---h---hhhhhHHHH
Q psy3495 24 KLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDN--PQEL----Q------CQIKE---I---NERATLFRI 85 (266)
Q Consensus 24 el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~--p~e~----~------~kik~---V---~ERATLFKI 85 (266)
.+......|...+..|..-..-+......++++++.|+.+.. +.+. + .++.. | =|-=.+-..
T Consensus 5 ~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~ 84 (133)
T 1fxk_C 5 EIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKK 84 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEe
Confidence 445566677777777888888888888888888887776442 1110 0 00000 0 011122334
Q ss_pred hHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3495 86 TTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARC 132 (266)
Q Consensus 86 TS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQ 132 (266)
|..-.+.-+.+=++.+..+-+++++.++.=+++...+++.++++-.|
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556667777888899999999999999999999999999888655
No 26
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=37.37 E-value=1.3e+02 Score=25.41 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=18.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHH
Q psy3495 104 QGGKWQRMLQHERDQRLKLEELL 126 (266)
Q Consensus 104 ~e~kWqK~Lq~ErEQR~rLEE~l 126 (266)
-..+|+.....=..+|.+|++.+
T Consensus 197 l~~~W~~l~~~~~~r~~~L~~~~ 219 (323)
T 3edv_A 197 VLEAWKSLLDACESRRVRLVDTG 219 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888888876
No 27
>1q1f_A Neuroglobin; globin fold, heme protein, oxygen storage/transport complex; HET: HEM; 1.50A {Mus musculus} SCOP: a.1.1.2 PDB: 1w92_A* 3gk9_A* 2vry_A* 3gkt_A* 3gln_A* 1oj6_A*
Probab=37.32 E-value=79 Score=24.04 Aligned_cols=69 Identities=12% Similarity=0.236 Sum_probs=45.2
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHH--HHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLE--IAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~--La~q~e~kWqK~Lq~ 114 (266)
+..|+..+..+|+.+-. +.++..+...++.+.. ...-|++-..+++.++.+.+- +-..-...|.|.+..
T Consensus 61 ~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~l~~~H~~~gV~p~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~ 139 (151)
T 1q1f_A 61 FLDHIRKVMLVIDAAVTNVEDLSSLEEYLTSLGRKHRAVGVRLSSFSTVGESLLYMLEKSLGPDFTPATRTAWSRLYGA 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCSSSSHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 45677777777775544 3445444445544422 456788999999999998874 444445779888773
No 28
>4b4y_A Neuroglobin; transport protein, nervous system evolution, globin evolutio cnidarian, metazoan; HET: HEM; 2.30A {Symsagittifera roscoffensis}
Probab=37.20 E-value=57 Score=25.54 Aligned_cols=69 Identities=9% Similarity=0.208 Sum_probs=45.3
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHH---HHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLE---IAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~---La~q~e~kWqK~Lq~ 114 (266)
+..||..+..+|+..-. +.++..+...++.+.. ...-|++-..++|.++.+.+- +-..-...|.|.+..
T Consensus 68 ~~~H~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l~~~lg~~~~t~e~~~AW~~~~~~ 147 (154)
T 4b4y_A 68 FKSHAKSIGKVISDCLVDLNGVKKHEPKLSSLGAMHTKKKVPTELFGKLGGCILTQVVKRVSEAKWSEEKKEAWLKAYGI 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGGGGGHHHHGGGGGGSCTTTSCTHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 45677777777775443 2233334444444421 456799999999999999875 445567889988863
No 29
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=37.10 E-value=79 Score=23.75 Aligned_cols=69 Identities=16% Similarity=0.354 Sum_probs=44.7
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhh-------hhhhhHHHHhHHHHHHHHHHHHH--HHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEI-------NERATLFRITTNAMINSCGKYLE--IAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V-------~ERATLFKITS~AMInAc~efL~--La~q~e~kWqK~Lq~ 114 (266)
+.+|+..|..+|...-. +.++..+...++.+ .=...-|++-..+++.++.+.+- +...-...|.|.+..
T Consensus 46 ~~~h~~~l~~al~~~v~~ld~~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~ 124 (131)
T 3ubc_A 46 ISSQSRKLMQVLGILVQGIDNLEGLIPTLQDLGRRHKQYGVVDSHYPLVGDCLLKSIQEYLGQGFTEEAKAAWTKVYGI 124 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGGGGGHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCccCCHHHHHHHHHHHHH
Confidence 35677777777775433 23333333334333 11456799999999999999983 455556889988763
No 30
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=36.83 E-value=2.4e+02 Score=25.44 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=64.9
Q ss_pred HHHhHHHHHHHHHhhhhcCCCc-hhh-----hhh-hhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q psy3495 46 INKHGAALLRTLSELESCDNPQ-ELQ-----CQI-KEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQ 118 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs~~~p~-e~~-----~ki-k~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ErEQ 118 (266)
+.++...||+-|+.|-..+.-. +.. ..+ ..|+|=-.+|+.-+.+|||-+.+|-++-.....++-..+.+=-.|
T Consensus 171 Ll~~l~~lQ~lid~ll~~~~~~~~~~N~l~~~A~~llv~ds~~lY~~inegii~lLe~ffem~~~da~~al~iykrf~~Q 250 (310)
T 3zym_A 171 LLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTR 250 (310)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 7889999999999876543211 111 222 233888999999999999999999999888888888777766667
Q ss_pred HHHHHHHHHHHHhhhC
Q psy3495 119 RLKLEELLEQMARCST 134 (266)
Q Consensus 119 R~rLEE~lEqLAKQh~ 134 (266)
-.+|-+=|+ .+|+..
T Consensus 251 ~e~L~~Fy~-~ck~l~ 265 (310)
T 3zym_A 251 MTRISEFLK-VAEQVG 265 (310)
T ss_dssp HHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHH-HHHHcC
Confidence 777777776 456654
No 31
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=36.47 E-value=2.4e+02 Score=25.51 Aligned_cols=24 Identities=4% Similarity=0.218 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhh
Q psy3495 39 LQSYNEIINKHGAALLRTLSELES 62 (266)
Q Consensus 39 L~Tc~DLI~KhG~aLQRsL~ELEs 62 (266)
.+-.+.+|-|+.+.+|+.|..++.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEA 418 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHH
Confidence 445566777777777777777654
No 32
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=36.41 E-value=1.3e+02 Score=31.79 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=8.1
Q ss_pred HHhHHHHHHHHHhhhh
Q psy3495 47 NKHGAALLRTLSELES 62 (266)
Q Consensus 47 ~KhG~aLQRsL~ELEs 62 (266)
.+....|++.+.+|+.
T Consensus 959 ~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 959 STETEKLRSDVERLRM 974 (1080)
T ss_dssp HHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555544
No 33
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=36.14 E-value=1.4e+02 Score=26.51 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=66.5
Q ss_pred HHHHhHHHHHHHHHhhhhcCCCc-hh------hhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q psy3495 45 IINKHGAALLRTLSELESCDNPQ-EL------QCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERD 117 (266)
Q Consensus 45 LI~KhG~aLQRsL~ELEs~~~p~-e~------~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ErE 117 (266)
.+.++...||+.++.+-....-. .. ..-...|+|=..+|+.-+.+|+|-+..|-++......++-+.+.+=..
T Consensus 177 ~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~~lY~~i~~gi~~lLe~~fem~~~d~~~al~iykrf~~ 256 (299)
T 1hx8_A 177 KLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLV 256 (299)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 47888999999999776432211 11 122233488889999999999999999998888888888887777777
Q ss_pred HHHHHHHHHHHHHhhhC
Q psy3495 118 QRLKLEELLEQMARCST 134 (266)
Q Consensus 118 QR~rLEE~lEqLAKQh~ 134 (266)
|-.+|-+=|+- +|++.
T Consensus 257 q~~~L~~Fy~~-c~~~~ 272 (299)
T 1hx8_A 257 RMDRVGEFLKV-AENVG 272 (299)
T ss_dssp HHHHHHHHHHH-HHHTT
T ss_pred HHHHHHHHHHH-HHHCC
Confidence 88888888875 55554
No 34
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=35.27 E-value=1.2e+02 Score=21.67 Aligned_cols=28 Identities=11% Similarity=0.421 Sum_probs=22.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3495 105 GGKWQRMLQHERDQRLKLEELLEQMARC 132 (266)
Q Consensus 105 e~kWqK~Lq~ErEQR~rLEE~lEqLAKQ 132 (266)
..+|.+....=.+|+.+|++.+.++-||
T Consensus 91 ~~rw~~L~~~~~~R~~~L~~aL~~~Qk~ 118 (118)
T 3uul_A 91 NARWEALRVESMERQSRLHDALMELQKK 118 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4679888888888999999999877554
No 35
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=34.66 E-value=1.7e+02 Score=26.12 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q psy3495 105 GGKWQRMLQHERDQRLKLEELLEQ 128 (266)
Q Consensus 105 e~kWqK~Lq~ErEQR~rLEE~lEq 128 (266)
..+|......=..||.+|++.++.
T Consensus 217 ~~~W~~L~~~~~~R~~~L~~~~~~ 240 (476)
T 1hci_A 217 CDQWDRLGTLTQKRREALERMEKL 240 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457877777777788888876543
No 36
>2vyw_A Hemoglobin; trematode, oxygen binding; HET: HEM; 1.8A {Fasciola hepatica}
Probab=34.07 E-value=67 Score=25.24 Aligned_cols=68 Identities=21% Similarity=0.175 Sum_probs=43.7
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ 114 (266)
+..||..+..+|...-. +.++..+...++.+.. ...-|++-..+++.++.+. .+...-...|.|.+..
T Consensus 64 ~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~~~V~p~~f~~~~~~Ll~~l~~~-~~t~e~~~AW~k~~~~ 139 (148)
T 2vyw_A 64 IRYYGRTLGEELIRLLKAASNPSVLEERIVQGAKDHKARPVTKDQFTGAAPIFIKFFQGL-LKKQEDKDAIEKFLLH 139 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTSSCCHHHHHHTHHHHHHHHHHH-CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 35677777777775544 3333334444444411 4557999999999999887 4445556779998873
No 37
>1sct_B Hemoglobin II (carbonmonoxy) (beta chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=33.48 E-value=75 Score=24.64 Aligned_cols=69 Identities=13% Similarity=0.306 Sum_probs=45.0
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHH--HHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLE--IAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~--La~q~e~kWqK~Lq~ 114 (266)
+..|+..+..+|..+-. +.++..+...++.+.. ...-|++-..++|.++.+.+- +...-...|.|.+..
T Consensus 68 ~~~h~~~v~~al~~~v~~ld~~~~l~~~l~~L~~~H~~~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~ 146 (151)
T 1sct_B 68 LRGHSITLMYALQNFVDALDDVERLKCVVEKFAVNHINRQISADEFGEIVGPLRQTLKARMGNYFDEDTVAAWASLVAV 146 (151)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCCHHHHHTTHHHHHHHHHHHHGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 34677777777775554 3344444444444422 455788889999999988764 444556779888763
No 38
>1h97_A Globin-3; HET: HEM; 1.17A {Paramphistomum epiclitum} SCOP: a.1.1.2 PDB: 1kfr_A*
Probab=33.22 E-value=81 Score=24.73 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=43.9
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhh-------hhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEIN-------ERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~-------ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ 114 (266)
+..||..+..+|...-. +.++..+...++.+. =...-|++-..+++.++.+. .+...-...|.|.+..
T Consensus 63 ~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~~~V~p~~f~~~~~~Ll~~l~~~-~~t~e~~~AW~k~~~~ 138 (147)
T 1h97_A 63 IKHYARTLTEAIVHMLKEISNDAEVKKIAAQYGKDHTSRKVTKDEFMSGEPIFTKYFQNL-VKDAEGKAAVEKFLKH 138 (147)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHHHHHHH-SSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 55777777777775544 233333444444442 15567999999999999887 5545556789988863
No 39
>2c0k_A Hemoglobin; oxygen transport, heme, iron, metal-binding; HET: HEM; 2.6A {Gasterophilus intestinalis}
Probab=32.95 E-value=77 Score=24.70 Aligned_cols=69 Identities=12% Similarity=0.265 Sum_probs=46.4
Q ss_pred HHHhHHHHHHHHHhhhh-cC---CCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CD---NPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~---~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ 114 (266)
+..|+..+..+|...-. +. ++..+...++.+.. ...-|++-..+++.++.+.+-+...-...|.|.+..
T Consensus 59 ~~~h~~~v~~~l~~~v~~ld~~~~~~~l~~~l~~L~~~H~~~~V~p~~f~~~~~~Ll~~l~~~lg~t~e~~~AW~k~~~~ 138 (151)
T 2c0k_A 59 FKTHGTRILRQVDEGVKALSVDFGDKKFDDVWKKLAQTHHEKKVERRSYNELKDIIIEVVCSCVKLNEKQVHAYHKFFDR 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34677777777775544 33 45555555555522 456799999999999999876434445789998873
No 40
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=32.92 E-value=1.8e+02 Score=22.81 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=34.6
Q ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhh
Q psy3495 20 DGEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELE 61 (266)
Q Consensus 20 ~~~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELE 61 (266)
+...-....++.|+.+|.++..-+.-|.-+.+.+|..++++-
T Consensus 13 ~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 13 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555678999999999999999999999999998888764
No 41
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=32.61 E-value=2.2e+02 Score=23.81 Aligned_cols=70 Identities=11% Similarity=0.268 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhh-----cCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHH
Q psy3495 39 LQSYNEIINKHGAALLRTLSELES-----CDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQ 113 (266)
Q Consensus 39 L~Tc~DLI~KhG~aLQRsL~ELEs-----~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq 113 (266)
|.+-.+-|...++.||-.+.+|-. ...|.. ..++.|...+.. ..+=|+...+|+. ..-.-|+|+++
T Consensus 19 L~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~--~ql~~v~kdi~~----a~~eL~~m~~~i~---~ekP~WKKiWE 89 (141)
T 3okq_A 19 LGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAK--KKLETVSKDLEN----AQADVLKLQEFID---TEKPHWKKTWE 89 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHH----HHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHH----HHHHHHHHHHHHH---HcCchhHHHHH
Confidence 444456666678888888877765 122332 344555433322 2344555566654 45677999999
Q ss_pred HHHH
Q psy3495 114 HERD 117 (266)
Q Consensus 114 ~ErE 117 (266)
.|-+
T Consensus 90 ~EL~ 93 (141)
T 3okq_A 90 AELD 93 (141)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 42
>1it2_A Hemoglobin; hagfish, deoxy form, oxygen storage/transport complex; HET: HEM; 1.60A {Eptatretus burgeri} SCOP: a.1.1.2 PDB: 1it3_A*
Probab=32.02 E-value=64 Score=25.17 Aligned_cols=61 Identities=11% Similarity=0.357 Sum_probs=39.6
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh--------hhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEINE--------RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E--------RATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ 114 (266)
+..|+..+..+|.+.-. +.++..+...++.+.. ...-|++-..+++.++.+.+- |.|.+..
T Consensus 68 ~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~lg--------W~k~~~~ 137 (146)
T 1it2_A 68 VKHQAVVIFNKVNEIINSMDNQEEIIKSLKDLSQKHKTVFKVDSIWFKELSSIFVSTIDGGAE--------FEKLFSI 137 (146)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHHTTCCHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCC--------HHHHHHH
Confidence 45677777777775544 3344444445555522 234588888888888887665 9998873
No 43
>1k4u_P Phagocyte NADPH oxidase subunit P47PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=31.94 E-value=16 Score=23.86 Aligned_cols=12 Identities=42% Similarity=0.825 Sum_probs=10.3
Q ss_pred cCCCCCCCCCCC
Q psy3495 224 EGVPNLPPRTSP 235 (266)
Q Consensus 224 ~~~~~~~~~~~~ 235 (266)
.++|..|||.||
T Consensus 2 k~~P~vPpRPs~ 13 (32)
T 1k4u_P 2 KPQPAVPPRPSA 13 (32)
T ss_dssp CCCCCCCCCCCH
T ss_pred CCCCCCCCCCCH
Confidence 578999999886
No 44
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=31.69 E-value=3.8e+02 Score=26.25 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q psy3495 105 GGKWQRMLQHERDQRLKLEELLEQ 128 (266)
Q Consensus 105 e~kWqK~Lq~ErEQR~rLEE~lEq 128 (266)
..+|..-.+.=..||.+|++.++.
T Consensus 456 ~~~W~~L~~~~~~R~~~L~~~l~~ 479 (863)
T 1sjj_A 456 CDQWDNLGALTQKRREALERTEKL 479 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777767777777776643
No 45
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=31.04 E-value=61 Score=25.23 Aligned_cols=68 Identities=16% Similarity=0.377 Sum_probs=41.3
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ 114 (266)
+..|+..+..+|...-. +.++..+...+..+.. ...-|++-..++|.++.+. .+...-...|.|.+..
T Consensus 66 ~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~l~~~H~~~~V~p~~f~~~~~~ll~~l~~~-~~t~e~~~AW~k~~~~ 141 (146)
T 3g46_A 66 LRGHSITLMYALQNFIDQLDNPDDLVCVVEKFAVNHITRKISAAEFGKINGPIKKVLASK-NFGDKYANAWAKLVAV 141 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCCHHHHGGGHHHHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 44566666666664443 2233333333333311 4556888889999999887 5555556889988763
No 46
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=30.80 E-value=2.6e+02 Score=25.71 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=18.5
Q ss_pred HHHhhhhHHHHHHHHHHhHHHHHHHHH
Q psy3495 32 LSVNLEQLQSYNEIINKHGAALLRTLS 58 (266)
Q Consensus 32 LseKL~DL~Tc~DLI~KhG~aLQRsL~ 58 (266)
|..=+..|..+++++..+-.+|+|+=.
T Consensus 284 L~~Y~~ll~s~Kdll~~R~~aL~k~~e 310 (386)
T 4akv_A 284 LSLYQGLLSNFPDIIHLQKGAFAKVKE 310 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444477888888888888887643
No 47
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=30.25 E-value=1.4e+02 Score=25.87 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 112 LQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 112 Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
|+.|.+.|..|.+.+..|....+
T Consensus 149 LE~El~EKe~l~~~~QRLkdE~r 171 (189)
T 2v71_A 149 LESELDEKESLLVSVQRLKDEAR 171 (189)
T ss_dssp HHHHHHHHHHHHCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444
No 48
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=30.00 E-value=81 Score=21.67 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=18.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHhHHHHHH
Q psy3495 29 IKTLSVNLEQLQSYNEIINKHGAALLR 55 (266)
Q Consensus 29 lR~LseKL~DL~Tc~DLI~KhG~aLQR 55 (266)
+-.|..|..||++-+.-+...+++||+
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777766666667777765
No 49
>1yhu_A Hemoglobin A1 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=29.81 E-value=88 Score=24.34 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=44.9
Q ss_pred HHHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q psy3495 45 IINKHGAALLRTLSELES-CDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH 114 (266)
Q Consensus 45 LI~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ 114 (266)
-+..|+..|..+|...-. +.++..+...++.+.. ...-|++-..++|.++.+.+--.-+. ..|.|.+..
T Consensus 58 ~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~ll~~l~~~lg~~~t~-~AW~~~~~~ 134 (145)
T 1yhu_A 58 EFKAHIARVLGGLDRVISMLDNQATLDADLAHLKSQHDPRTIDPVNFVVFRKALIATVAGTFGVCFDV-PAWQGCYNI 134 (145)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHGGGCCCTHHHHHHHHHHHHHHHHHHCTTCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHccccCCH-HHHHHHHHH
Confidence 355788777777775544 3344444444444422 34579999999999999977533333 889998874
No 50
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=29.33 E-value=64 Score=25.10 Aligned_cols=67 Identities=12% Similarity=0.238 Sum_probs=40.6
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh--------hhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEINE--------RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E--------RATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ 114 (266)
+..|+..+..+|..+-. +.++..+...++.+.. ...-|++-..++|.++.+.+- .-+. +.|.|.+..
T Consensus 63 ~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~l~~~lg-~~t~-~AW~~~~~~ 138 (149)
T 1yhu_D 63 FKAHCIRVVNGLDSSIGLLSDPATLNEQLSHLATQHKARSGVTKGGFSAIAQSFLRVMPQVAS-CFNP-DAWSRCFNR 138 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHSS-SCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHcC-CCCH-HHHHHHHHH
Confidence 45555555555554332 2333333334444411 344699999999999999887 4443 689998873
No 51
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=29.31 E-value=1.7e+02 Score=21.53 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=20.6
Q ss_pred HhHHHHHHHHHHHHHHHHhchhhhHHHHH
Q psy3495 85 ITTNAMINSCGKYLEIAQTQGGKWQRMLQ 113 (266)
Q Consensus 85 ITS~AMInAc~efL~La~q~e~kWqK~Lq 113 (266)
.+...+|.-+.+|+.-+++...+.+...+
T Consensus 36 ~sk~~iL~kA~~yI~~L~~~~~~l~~e~~ 64 (80)
T 1nlw_A 36 HTTLSLLTKAKLHIKKLEDSDRKAVHQID 64 (80)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888888999999888876444433
No 52
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=29.28 E-value=2.3e+02 Score=23.10 Aligned_cols=95 Identities=19% Similarity=0.329 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhh------hHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHH
Q psy3495 23 VKLENIIKTLSVNLE------QLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGK 96 (266)
Q Consensus 23 ~el~~~lR~LseKL~------DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~e 96 (266)
.++..=+......|. ||.+.+.+|.||- .|++-+... .+++..+...+..|-..-...
T Consensus 30 ~~l~~Wl~e~e~~l~s~d~g~Dl~~v~~ll~kh~-~~e~ei~~~---------~~~v~~~~~~~~~~~~~~~~~------ 93 (224)
T 2iak_A 30 QDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHK-NVHRAIEEF---------ESSLKEAKISEIQMTAPLKLS------ 93 (224)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHH-HHHHHHHHT---------HHHHHHHHHHGGGCCTTHHHH------
T ss_pred HHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHH-HHHHHHHHH---------HHHHHHHHHHHHhcccchhHH------
Confidence 344444445555553 6788888887764 345444432 224444433333331100111
Q ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 97 YLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 97 fL~La~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
.-.....=..+|.+-+..-..||.+|+ .+.++.+...
T Consensus 94 i~~~~~~l~~~~~~L~~~~~~R~~~Le-~l~~F~~~~~ 130 (224)
T 2iak_A 94 YTDKLHRLESQYAKLLNTSRNQERHLD-TLHNFVTRAT 130 (224)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 223344446689998888899999998 6666665554
No 53
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.22 E-value=1.1e+02 Score=20.38 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=26.7
Q ss_pred HHHHHhhhhHHHHHHHHHHhHHHHHHHHHhh
Q psy3495 30 KTLSVNLEQLQSYNEIINKHGAALLRTLSEL 60 (266)
Q Consensus 30 R~LseKL~DL~Tc~DLI~KhG~aLQRsL~EL 60 (266)
.+|..|+++|--.+.-+...+..|+..|.+-
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999998888764
No 54
>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex; HET: HEM; 1.40A {Glycera dibranchiata} SCOP: a.1.1.2 PDB: 1jl7_A* 1jf4_A* 1jl6_A* 1vre_A* 1vrf_A* 1hbg_A* 2hbg_A*
Probab=29.20 E-value=1.2e+02 Score=23.14 Aligned_cols=71 Identities=11% Similarity=0.225 Sum_probs=43.9
Q ss_pred HHHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhh----------hhhhHHHHhHHHHHHHHHHHHH--HHHhchhhhHHH
Q psy3495 45 IINKHGAALLRTLSELES-CDNPQELQCQIKEIN----------ERATLFRITTNAMINSCGKYLE--IAQTQGGKWQRM 111 (266)
Q Consensus 45 LI~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~----------ERATLFKITS~AMInAc~efL~--La~q~e~kWqK~ 111 (266)
=+.+|+..|..+|...-. +.++..+...++.+. =...-|++-..+++.++.+++- +...-...|.|.
T Consensus 54 ~~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~~H~~~g~l~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~ 133 (147)
T 1jf3_A 54 GVAELGAKVLAQIGVAVSHLGDEGKMVAEMKAVGVRHKGYGNKHIKAEYFEPLGASLLSAMEHRIGGKMNAAAKDAWAAA 133 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHGGGSTTSCCCGGGHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 345666666666665433 233333333333331 2346799999999999999875 444556789998
Q ss_pred HHHH
Q psy3495 112 LQHE 115 (266)
Q Consensus 112 Lq~E 115 (266)
+..-
T Consensus 134 ~~~v 137 (147)
T 1jf3_A 134 YGDI 137 (147)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8743
No 55
>3lb2_A Dehaloperoxidase A; globin, oxidoreductase; HET: HEM; 1.06A {Amphitrite ornata} SCOP: a.1.1.2 PDB: 1ewa_A* 1ew6_A* 2qfk_A* 3kun_A* 3lb1_A* 3dr9_A* 3lb3_A* 3lb4_A* 3mou_A* 3ord_A* 3mym_A* 3k3u_A* 3o7n_A* 3kuo_A* 2qfn_A* 3myn_A* 3oj1_A* 3ok5_A* 3ixf_A*
Probab=29.15 E-value=1.1e+02 Score=23.96 Aligned_cols=67 Identities=10% Similarity=0.179 Sum_probs=40.7
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ 114 (266)
+..||..+..+|++.-. +.++..+...+..+.+ ...-|++-..+++.++..+-. ..-...|+|.|..
T Consensus 52 ~~aHg~kV~~al~~~v~~ldd~~~l~~~l~~L~~~H~~~gV~p~~F~~l~~~ll~~L~~~~~--~e~~~AW~k~~~~ 126 (137)
T 3lb2_A 52 FGDHTEKVFNLMMEVADRATDCVPLASDANTLVQMKQHSSLTTGNFEKLFVALVEYMRASGQ--SFDSQSWDRFGKN 126 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHCBTTBCCHHHHHHHHHCGGGTTCCHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHH
Confidence 55666666666665443 3333333333333311 345699999999999987544 5567889998873
No 56
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.08 E-value=1.1e+02 Score=23.87 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHH
Q psy3495 21 GEVKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEI 100 (266)
Q Consensus 21 ~~~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~L 100 (266)
...++.+..|.|+..|..-+--.++-......||..+..|+... .+..++|+..+-||.. =|+++..|++|
T Consensus 11 ~Ie~v~~r~r~l~~ell~~~~~s~~yl~~k~eLq~Li~~LDev~--~~~NpcIReaRRrAV~-------EvQ~lit~lDl 81 (89)
T 2d9d_A 11 KIEKVLKRMREIKNELLQAQNPSELYLSSKTELQGLIGQLDEVS--LEKNPCIREARRRAVI-------EVQTLITYIDL 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCTTTHHHHHHHHHHHHHHHHGGGC--SCSSHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHhhhHHHHHHHHHHHhhcc--cCCChHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 45677778888887776655556777778889999887776532 2233555555555543 35677778876
Q ss_pred H
Q psy3495 101 A 101 (266)
Q Consensus 101 a 101 (266)
-
T Consensus 82 k 82 (89)
T 2d9d_A 82 K 82 (89)
T ss_dssp H
T ss_pred H
Confidence 4
No 57
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi}
Probab=28.98 E-value=87 Score=24.14 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=43.6
Q ss_pred HHHhHHHHHHHHHhhhh-cCC---Cchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHH-HHHhchhhhHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDN---PQELQCQIKEINE-------RATLFRITTNAMINSCGKYLE-IAQTQGGKWQRMLQ 113 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~---p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~-La~q~e~kWqK~Lq 113 (266)
+..|+..+..+|..+-. +.+ +..+...++.+.. ...-|++-..++|.++.+.+- +-..-...|.|.+.
T Consensus 61 ~~~h~~~v~~~l~~~v~~ld~~~~~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l~~~lg~~t~e~~~AW~~~~~ 140 (150)
T 1x46_A 61 FALHATRIVSVINEAIALMGVAENRPALKNVLKQQGINHKGRGVTAAHFEEFETALEAFLESHASGYNAGTKKAWDSAFN 140 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCcCcHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 34677666666665433 233 3334444444421 466799999999999999876 33344678998887
Q ss_pred H
Q psy3495 114 H 114 (266)
Q Consensus 114 ~ 114 (266)
.
T Consensus 141 ~ 141 (150)
T 1x46_A 141 N 141 (150)
T ss_dssp H
T ss_pred H
Confidence 4
No 58
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.95 E-value=69 Score=30.24 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 111 MLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 111 ~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
+++.|+-||++||-.|+.+.=..+
T Consensus 39 KmeqE~lrRRkLENSIdElKG~IR 62 (333)
T 4etp_B 39 TVCKELLRSRRLENSIIEQKGTMR 62 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHhhhHHHhcCcEE
Confidence 355677799999999999965554
No 59
>1yhu_C Hemoglobin B1A chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=28.88 E-value=65 Score=25.06 Aligned_cols=67 Identities=15% Similarity=0.274 Sum_probs=43.7
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh--------hhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEINE--------RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E--------RATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ 114 (266)
+..|+..|..+|..+-. +.++..+...++.+.. ...-|++-..++|.++.+.+- .-+. +.|.|.+..
T Consensus 64 ~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~lg-~~t~-eAW~~~~~~ 139 (148)
T 1yhu_C 64 FQGHVVRVMGGLDILINALDDIPTLESMLDHLAGQHAVRDGVTGAGFQLMATVLMESLPQVVE-GFNP-DAWASCLAG 139 (148)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHTSTTCCTTHHHHHHHHHHHHHHHHSS-SCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHcC-CCCH-HHHHHHHHH
Confidence 56677777777775443 2344444444444421 345699999999999999876 4444 499998874
No 60
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=28.45 E-value=94 Score=20.51 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=25.4
Q ss_pred HHHHHhhhhHHHHHHHHHHhHHHHHHHHHh
Q psy3495 30 KTLSVNLEQLQSYNEIINKHGAALLRTLSE 59 (266)
Q Consensus 30 R~LseKL~DL~Tc~DLI~KhG~aLQRsL~E 59 (266)
.+|..|+++|--.+.-+...+..|+..|.+
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAVGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 578999999999999998888888887753
No 61
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina arenicola} SCOP: a.1.1.2
Probab=27.79 E-value=1.4e+02 Score=23.24 Aligned_cols=69 Identities=10% Similarity=0.201 Sum_probs=45.4
Q ss_pred HHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHH--HHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELESCDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLE--IAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~--La~q~e~kWqK~Lq~ 114 (266)
+..|+..|..+|..+-..-+...+...++.+.. ...-|++-..+++.++.+.+- +-..-...|.|.+..
T Consensus 71 ~~~h~~~v~~al~~~v~~ld~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~ 148 (158)
T 1hlb_A 71 MQAHAIRVSSIMSEYVEELDSDILPELLATLARTHDLNKVGADHYNLFAKVLMEALQAELGSDFNEKTRDAWAKAFSV 148 (158)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTSHHHHTHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 467888888888866653222334444444422 456788889999999998864 334446779888763
No 62
>1b0b_A Hemoglobin; hemoprotein, sulfide carrier, globins, oxygen transport, oxygen storage/transport complex; HET: HEM; 1.43A {Lucina pectinata} SCOP: a.1.1.2 PDB: 1ebt_A* 1flp_A* 1moh_A*
Probab=27.76 E-value=60 Score=24.86 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=39.6
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ 114 (266)
+.+|+..+..+|..+-. +.++..+...++.+.. ...-|++-..+++.++.+.+-- ...|.|.+..
T Consensus 61 ~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~~H~~~~V~p~~f~~~~~~Ll~~l~~~lg~----~~AW~~~~~~ 133 (142)
T 1b0b_A 61 MAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLEAAFKVLAGFMKSYGGD----EGAWTAVAGA 133 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGGTCC----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHcCc----HHHHHHHHHH
Confidence 45666667666665443 2333344444444422 3456788788888888776542 6779988863
No 63
>2bnl_A Modulator protein RSBR; stress-response, stress response, phosphorylation; 2.0A {Bacillus subtilis}
Probab=27.57 E-value=56 Score=27.06 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=37.7
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHH
Q psy3495 41 SYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQ 113 (266)
Q Consensus 41 Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq 113 (266)
...+.|..|-++|..-- ...+|.++..- +..++=-...++|++|++++-+.-+. +....
T Consensus 6 ~i~~fI~enk~el~~~W------------~~~~k~~~~e~-~~~isd~vye~ts~Efv~lils~i~~-~~~~~ 64 (136)
T 2bnl_A 6 TVYQFIAENQNELLQLW------------TDTLKELSEQE-SYQLTDQVYENISKEYIDILLLSVKD-ENAAE 64 (136)
T ss_dssp HHHHHHHHTHHHHHHHH------------HHHHHHHHTTS-SCCCCHHHHHHHHHHHHHHHHTCSSC-TTTTH
T ss_pred HHHHHHHHhHHHHHHHH------------HHHHHHhhhhh-hhhccHHHHHHhhHHHHHHHHHHccc-chhHH
Confidence 45566666666654322 22445554444 66677777899999999999877655 44433
No 64
>2zs0_D Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2zfo_D* 2zs1_D* 2d2m_D* 2d2n_D*
Probab=27.14 E-value=1.1e+02 Score=24.11 Aligned_cols=68 Identities=7% Similarity=0.060 Sum_probs=43.9
Q ss_pred HHHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh--------hhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q psy3495 45 IINKHGAALLRTLSELES-CDNPQELQCQIKEINE--------RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH 114 (266)
Q Consensus 45 LI~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E--------RATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ 114 (266)
=+..||..+..+|++.-. +.++..+...++.+.. ...-|++-..+++.++.+.+- .-+ .+.|.|.|..
T Consensus 60 ~~~aH~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~~H~~~~gV~p~~F~~~~~~ll~~l~~~lg-~~t-~~AW~k~~~~ 136 (145)
T 2zs0_D 60 EFLAQVSRVISGADIAINSLTNRATCDSLLSHLNAQHKAISGVTGAAVTHLSEAISSVVAQVLP-SAH-IDAWGYCMAY 136 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHCT-TCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHcC-CCC-HHHHHHHHHH
Confidence 356777777777775533 3344444444444422 234499999999999998776 333 3599998873
No 65
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=26.79 E-value=1.3e+02 Score=20.05 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=25.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHhHHHHHHHHHh
Q psy3495 29 IKTLSVNLEQLQSYNEIINKHGAALLRTLSE 59 (266)
Q Consensus 29 lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~E 59 (266)
..+|..|+++|--.+.-+...+..|+..|.+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 4578999999988888888888888877765
No 66
>1eca_A Erythrocruorin (AQUO Met); oxygen transport; HET: HEM; 1.40A {Chironomus thummi thummi} SCOP: a.1.1.2 PDB: 1ecd_A* 1ecn_A* 1eco_A*
Probab=26.75 E-value=1.3e+02 Score=23.27 Aligned_cols=68 Identities=7% Similarity=0.142 Sum_probs=43.9
Q ss_pred HHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q psy3495 44 EIINKHGAALLRTLSELESCDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH 114 (266)
Q Consensus 44 DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ 114 (266)
.=+..||..+..+|++.-... ..+...++.+.. ...-|++-..+++.++.+.+-+... ...|+|.|..
T Consensus 53 ~~~~~Hg~~V~~~l~~~v~~l--~~l~~~l~~L~~~H~~~~V~p~~F~~l~~~ll~~l~~~~g~t~~-~~AW~k~~~~ 127 (136)
T 1eca_A 53 APFETHANRIVGFFSKIIGEL--PNIEADVNTFVASHKPRGVTHDQLNNFRAGFVSYMKAHTDFAGA-EAAWGATLDT 127 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--TCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHHHHHHHHSCGGGG-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHcCCCch-HHHHHHHHHH
Confidence 345677777777777554422 122233333321 3456999999999999987775555 7889998874
No 67
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.65 E-value=2e+02 Score=21.33 Aligned_cols=100 Identities=10% Similarity=0.150 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHhc
Q psy3495 25 LENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQ 104 (266)
Q Consensus 25 l~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~La~q~ 104 (266)
+......|..++..|..=...+..+...+..++.+|+.+... ....+.|.+ .+++.+-.-++..+..=++.+...
T Consensus 11 ~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d---~~vy~~iG~--vfv~~~~~ea~~~L~~~~e~ie~~ 85 (117)
T 2zqm_A 11 MLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDD---AVVYKTVGT--LIVKTTKDKAVAELKEKIETLEVR 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTT---CCEEEEETT--EEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---cHhHHHhhH--HHhhccHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666667777777777777764321 112344432 244455666667777777776666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3495 105 GGKWQRMLQHERDQRLKLEELLEQM 129 (266)
Q Consensus 105 e~kWqK~Lq~ErEQR~rLEE~lEqL 129 (266)
-++..+.+.+-..+=..++..+.++
T Consensus 86 i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 86 LNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555555544554444444
No 68
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=25.83 E-value=2.5e+02 Score=24.80 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=55.6
Q ss_pred HHHHhHHHHHHHHHhhhhcCCCc-hhh-----hhh-hhhhhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q psy3495 45 IINKHGAALLRTLSELESCDNPQ-ELQ-----CQI-KEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERD 117 (266)
Q Consensus 45 LI~KhG~aLQRsL~ELEs~~~p~-e~~-----~ki-k~V~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ErE 117 (266)
-+.++...||+-|+.|-..+.-. +.. ..+ ..|+|=..+|+.-+.+|||=+.+|.++-.....++-+.+.+=-.
T Consensus 170 ~Ll~~l~~lQ~lld~ll~~~~~~~~~~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ffem~~~da~~aleiykrf~~ 249 (271)
T 3zyl_A 170 KLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLT 249 (271)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 36788999999999775533211 111 222 23388999999999999999999999877666666665554444
Q ss_pred HHHHHHHHH
Q psy3495 118 QRLKLEELL 126 (266)
Q Consensus 118 QR~rLEE~l 126 (266)
|-.+|-+=|
T Consensus 250 Q~~~L~~Fy 258 (271)
T 3zyl_A 250 RMTRISEFL 258 (271)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
No 69
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.43 E-value=4.6e+02 Score=25.22 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhh----hhhhhHHHHhHHHHHH
Q psy3495 23 VKLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEI----NERATLFRITTNAMIN 92 (266)
Q Consensus 23 ~el~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V----~ERATLFKITS~AMIn 92 (266)
..+...+..|+..|.+|+.-+.-+......|..+|..-..... +....+..+ ..++...|++-..-|.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~--dndn~~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKAN--NNDNTFKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3456677777777777776666666655555555553322111 112233333 4477777777666554
No 70
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=24.66 E-value=2.4e+02 Score=24.91 Aligned_cols=83 Identities=17% Similarity=0.312 Sum_probs=50.5
Q ss_pred HHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHH--HHHhchhhhHHHHHHHH
Q psy3495 47 NKHGAALLRTLSELES-CDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLE--IAQTQGGKWQRMLQHER 116 (266)
Q Consensus 47 ~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~--La~q~e~kWqK~Lq~Er 116 (266)
.+|+..|..+|...-. +.++..+...++.+.. ...-|++-..++|.++.+.+- +...-...|.+.+..=-
T Consensus 51 ~~~~~~~~~~l~~~~~~ld~~~~l~~~l~~l~~~H~~~gv~~~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~a~~~la 130 (403)
T 1cqx_A 51 GQQQQALARAVYAYAENIEDPNSLMAVLKNIANKHASLGVKPEQYPIVGEHLLAAIKEVLGNAATDDIISAWAQAYGNLA 130 (403)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 5666666666664433 2333334444444421 456799999999999999875 55556678999988544
Q ss_pred HHHHHH-HHHHHHH
Q psy3495 117 DQRLKL-EELLEQM 129 (266)
Q Consensus 117 EQR~rL-EE~lEqL 129 (266)
+--+.. ++.|.+.
T Consensus 131 ~~~i~~~~~~y~~~ 144 (403)
T 1cqx_A 131 DVLMGMESELYERS 144 (403)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHhhhc
Confidence 433322 3445544
No 71
>1ith_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.50A {Urechis caupo} SCOP: a.1.1.2
Probab=24.25 E-value=1.4e+02 Score=22.74 Aligned_cols=67 Identities=7% Similarity=0.018 Sum_probs=42.2
Q ss_pred HHHhHHHHHHHHHhhhhcC-CCchhhhhhhhh-------hhhhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELESCD-NPQELQCQIKEI-------NERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs~~-~p~e~~~kik~V-------~ERATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ 114 (266)
+..|+..+..+|+..-..- ++ +...++.+ .=...-|++-..+++.++.+.+-+-..-...|.|.+..
T Consensus 61 ~~~h~~~v~~al~~~v~~ld~~--l~~~l~~L~~~H~~~gV~p~~f~~~~~~ll~~l~~~lg~t~e~~~AW~~~~~~ 135 (141)
T 1ith_A 61 YKAQTLTVINYLDKVVDALGGN--AGALMKAKVPSHDAMGITPKHFGQLLKLVGGVFQEEFSADPTTVAAWGDAAGV 135 (141)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTT--HHHHHHTTHHHHHTTTCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4567777776666544322 22 33333333 22566789999999999998776433446789988763
No 72
>2bk9_A CG9734-PA; oxygen transport, drosophila melanogaster hemoglobin, heme hexacoordination, insect hemoglobin, protein cavities; HET: HEM CXS; 1.2A {Drosophila melanogaster} PDB: 2g3h_A*
Probab=23.95 E-value=98 Score=24.00 Aligned_cols=35 Identities=6% Similarity=0.298 Sum_probs=27.8
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHH
Q psy3495 79 RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQ 113 (266)
Q Consensus 79 RATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq 113 (266)
...-|++-..+++.++.+.+-+...-...|.|.+.
T Consensus 102 ~p~~f~~~~~~Ll~~l~~~lg~t~e~~~AW~~~~~ 136 (153)
T 2bk9_A 102 SKESYNQLKGVILDVLTAASSLDESQAATWAKLVD 136 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45678999999999999987754555678998887
No 73
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.88 E-value=4.7e+02 Score=24.80 Aligned_cols=34 Identities=9% Similarity=-0.035 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Q psy3495 25 LENIIKTLSVNLEQLQSYNEIINKHGAALLRTLS 58 (266)
Q Consensus 25 l~~~lR~LseKL~DL~Tc~DLI~KhG~aLQRsL~ 58 (266)
+.+.++.|..-|.+|+.....+...+.+||....
T Consensus 36 V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~ 69 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYP 69 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556677777777777777777766666666533
No 74
>4hrt_A Globin-2 A chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_A*
Probab=23.79 E-value=1.4e+02 Score=23.26 Aligned_cols=36 Identities=11% Similarity=0.263 Sum_probs=26.5
Q ss_pred hhhHHHHhHHHHHHHHHHHHH--HHHhchhhhHHHHHH
Q psy3495 79 RATLFRITTNAMINSCGKYLE--IAQTQGGKWQRMLQH 114 (266)
Q Consensus 79 RATLFKITS~AMInAc~efL~--La~q~e~kWqK~Lq~ 114 (266)
...-|++-..++|.++.+.+- +...-...|.|.+..
T Consensus 108 ~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~ 145 (150)
T 4hrt_A 108 SGDAFGAIVEPMKETLKARMGNYYSDDVAGAWAALVGV 145 (150)
T ss_dssp CHHHHGGGHHHHHHHHHHHHGGGCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 455688889999999998873 444445779888763
No 75
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=23.72 E-value=93 Score=21.18 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=20.7
Q ss_pred HhhhhHHHHHHHHHHhHHHHHHHHHhhh
Q psy3495 34 VNLEQLQSYNEIINKHGAALLRTLSELE 61 (266)
Q Consensus 34 eKL~DL~Tc~DLI~KhG~aLQRsL~ELE 61 (266)
.=+.||++.++.+-+++.+|..-|+.|.
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888877777664
No 76
>2zs0_B Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_B* 2d2m_B* 2zfo_B* 2zs1_B*
Probab=23.65 E-value=1.3e+02 Score=22.98 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=40.9
Q ss_pred HHHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh-------hhhHHHHhHHHHHHHHHHHHHH-HHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELES-CDNPQELQCQIKEINE-------RATLFRITTNAMINSCGKYLEI-AQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E-------RATLFKITS~AMInAc~efL~L-a~q~e~kWqK~Lq~ 114 (266)
+..|+..+..+|+.+-. +.++..+...++.+.. ...-|++-..++|.++.+.+-- .-+. +.|.|.|..
T Consensus 59 ~~~h~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l~~~lg~~~~t~-~AW~~~~~~ 135 (142)
T 2zs0_B 59 FQAHSLRVLGGLDMCVASLDDVPVLNALLARLNSQHDSRGIPAAGYPAFVASAISAVRATVGARSFDN-DAWNSCMNQ 135 (142)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTSCCCTTHHHHHHHHHHHHHHHHHCGGGCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHcCCcCCCH-HHHHHHHHH
Confidence 45566555555554433 2333334444444421 3456999999999999998753 2232 589998864
No 77
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=23.61 E-value=2.7e+02 Score=21.93 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=19.1
Q ss_pred HHhchhhhHHHHHHHHHHHHHHHHHHH
Q psy3495 101 AQTQGGKWQRMLQHERDQRLKLEELLE 127 (266)
Q Consensus 101 a~q~e~kWqK~Lq~ErEQR~rLEE~lE 127 (266)
+..=..+|++-.+.-.+++.+|++.++
T Consensus 82 l~~L~~~w~~L~~~~~~r~~~L~~~l~ 108 (214)
T 1s35_A 82 LEGLDTGWDALGRMWESRSHTLAQCLG 108 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456788888888888888887553
No 78
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=23.50 E-value=1.3e+02 Score=23.63 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3495 108 WQRMLQHERDQRLKLEELLEQMARC 132 (266)
Q Consensus 108 WqK~Lq~ErEQR~rLEE~lEqLAKQ 132 (266)
.+|-++.+--.|.-||-.++.|..+
T Consensus 74 lrK~lD~~~l~r~dLE~~iesL~eE 98 (119)
T 3ol1_A 74 FRQDVDNASLARLDLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555443
No 79
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=23.42 E-value=1.2e+02 Score=23.10 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy3495 22 EVKLENIIKTLSVNLEQ 38 (266)
Q Consensus 22 ~~el~~~lR~LseKL~D 38 (266)
+.+|...++.|...|.+
T Consensus 22 N~~Le~~v~~le~~Le~ 38 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEE 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33444455555444433
No 80
>2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A {Petromyzon marinus} SCOP: a.1.1.2 PDB: 3lhb_A* 1f5o_A* 1f5p_A* 1uc3_A*
Probab=23.28 E-value=1.6e+02 Score=22.66 Aligned_cols=61 Identities=5% Similarity=0.282 Sum_probs=39.2
Q ss_pred HHhHHHHHHHHHhhhh-cCCCchhhhhhhhhhh--------hhhHHHHhHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q psy3495 47 NKHGAALLRTLSELES-CDNPQELQCQIKEINE--------RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQH 114 (266)
Q Consensus 47 ~KhG~aLQRsL~ELEs-~~~p~e~~~kik~V~E--------RATLFKITS~AMInAc~efL~La~q~e~kWqK~Lq~ 114 (266)
..|+..+..+|+..-. +.++..+...++.+.. ...-|++-..+++.++.+.+-- |.|.+..
T Consensus 71 ~~h~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~lg~-------W~k~~~~ 140 (149)
T 2lhb_A 71 RWHAERIINAVDDAVASMDDTEKMSMKLRNLSGKHAKSFQVDPEYFKVLAAVIADTVAAGDAG-------FEKLMSM 140 (149)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHHHHHHHHHTTCHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHcch-------HHHHHHH
Confidence 5777777777775544 3344444444444422 3346888888999888876542 9998874
No 81
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=23.28 E-value=3.3e+02 Score=22.75 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q psy3495 105 GGKWQRMLQHERDQRLKLEELLE 127 (266)
Q Consensus 105 e~kWqK~Lq~ErEQR~rLEE~lE 127 (266)
..+|++....-.+||.+||+.+.
T Consensus 88 ~~~w~~L~~~~~~R~~~Le~~~~ 110 (322)
T 1u4q_A 88 NGRFQRIKSMAAARRAKLNESHR 110 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777767777777776654
No 82
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=23.24 E-value=6.8e+02 Score=26.41 Aligned_cols=15 Identities=20% Similarity=0.014 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhh
Q psy3495 118 QRLKLEELLEQMARC 132 (266)
Q Consensus 118 QR~rLEE~lEqLAKQ 132 (266)
.+..|+..+++-.++
T Consensus 1064 ~~~~~~~~~~~~~~~ 1078 (1080)
T 2dfs_A 1064 ETKQLELDLNDERLR 1078 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 444555555544443
No 83
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.12 E-value=99 Score=22.40 Aligned_cols=29 Identities=7% Similarity=0.311 Sum_probs=20.6
Q ss_pred HHhHHHHHHHHHHHHHHHHhchhhhHHHH
Q psy3495 84 RITTNAMINSCGKYLEIAQTQGGKWQRML 112 (266)
Q Consensus 84 KITS~AMInAc~efL~La~q~e~kWqK~L 112 (266)
|..-+.+|....+|+...+++....+..+
T Consensus 35 k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~ 63 (83)
T 1nkp_B 35 KASRAQILDKATEYIQYMRRKNHTHQQDI 63 (83)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888889998877776654433
No 84
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant tortoise, geochelone gigantea, oxygen storage/transport complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP: a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Probab=22.82 E-value=2.5e+02 Score=21.39 Aligned_cols=67 Identities=15% Similarity=0.260 Sum_probs=40.8
Q ss_pred HHHhHHHHHHHHHhhhhcCCCchhhhhhhhh--------hhhhhHHHHhHHHHHHHHHHHHH--HHHhchhhhHHHHHH
Q psy3495 46 INKHGAALLRTLSELESCDNPQELQCQIKEI--------NERATLFRITTNAMINSCGKYLE--IAQTQGGKWQRMLQH 114 (266)
Q Consensus 46 I~KhG~aLQRsL~ELEs~~~p~e~~~kik~V--------~ERATLFKITS~AMInAc~efL~--La~q~e~kWqK~Lq~ 114 (266)
+..|+..|..+|...-..-+. +...++.+ .=...-|++-..+++.++.+.+- +...-...|.|.+..
T Consensus 55 ~~~h~~~v~~al~~~v~~ld~--l~~~l~~L~~~H~~~~~V~p~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~ 131 (141)
T 1wmu_A 55 IRHHGKKVVGALGDAVKHIDN--LSATLSELSNLHAYNLRVDPVNFKLLSHCFQVVLGAHLGREYTPQVQVAYDKFLAA 131 (141)
T ss_dssp HHHHHHHHHHHHHHHHHTTTS--HHHHTHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhh--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHH
Confidence 346666666666644432111 22222333 11445799999999999999873 444556789998874
No 85
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.46 E-value=2.4e+02 Score=22.27 Aligned_cols=9 Identities=0% Similarity=0.346 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q psy3495 93 SCGKYLEIA 101 (266)
Q Consensus 93 Ac~efL~La 101 (266)
.+.+++.+.
T Consensus 78 eIk~~l~~~ 86 (148)
T 3gpv_A 78 KIKQFIDWS 86 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 344444443
No 86
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=22.37 E-value=1e+02 Score=24.24 Aligned_cols=30 Identities=10% Similarity=0.413 Sum_probs=24.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3495 104 QGGKWQRMLQHERDQRLKLEELLEQMARCS 133 (266)
Q Consensus 104 ~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh 133 (266)
..+.|.+.++.|+++-..|.+.+.+|-.+.
T Consensus 83 ~~~~l~~~~~~e~~~~~~L~~~i~~Le~el 112 (117)
T 3kin_B 83 TAEEWKKKYEKEKEKNKALKSVIQHLEVEL 112 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346799999999999999988888887665
No 87
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=22.06 E-value=1.4e+02 Score=22.39 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=26.1
Q ss_pred HHhchhhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3495 101 AQTQGGKWQRMLQHERDQRLKLEELLEQMARCST 134 (266)
Q Consensus 101 a~q~e~kWqK~Lq~ErEQR~rLEE~lEqLAKQh~ 134 (266)
++.--+.|+.+++.|...|..+|..+-.|.|..+
T Consensus 26 ~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD 59 (86)
T 3swk_A 26 LAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3344466888899999999999888888877653
No 88
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=21.45 E-value=66 Score=26.04 Aligned_cols=19 Identities=26% Similarity=0.628 Sum_probs=13.9
Q ss_pred ccccCCCCCCCCCccccccee
Q psy3495 184 EPVRYPYSPHFPSCSLMTQVY 204 (266)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~ 204 (266)
-|-.||++| |.+.+.|.+|
T Consensus 69 fp~~YP~~p--P~v~f~t~i~ 87 (167)
T 3fn1_B 69 VPDAYNMVP--PKVKCLTKIW 87 (167)
T ss_dssp CCTTBTTBC--CEEEECSCCC
T ss_pred CCCCCCCCC--CeeEecCCcc
Confidence 477899987 6777777654
No 89
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.30 E-value=5.7e+02 Score=24.79 Aligned_cols=16 Identities=6% Similarity=0.370 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhhhHH
Q psy3495 25 LENIIKTLSVNLEQLQ 40 (266)
Q Consensus 25 l~~~lR~LseKL~DL~ 40 (266)
+.+.+..|..+|++|+
T Consensus 98 V~~~LqeLe~~l~~ls 113 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHh
Confidence 4455666666666654
No 90
>1ylm_A Hypothetical protein BSU32300; MCSG, structural genomics, hypothetical cytosolic protein, PSI, protein structure initiative; 1.83A {Bacillus subtilis subsp}
Probab=20.59 E-value=2.8e+02 Score=21.27 Aligned_cols=53 Identities=9% Similarity=0.067 Sum_probs=32.0
Q ss_pred HHHHHhHHHHHHHHHhhhhcCCCchhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHH
Q psy3495 44 EIINKHGAALLRTLSELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEI 100 (266)
Q Consensus 44 DLI~KhG~aLQRsL~ELEs~~~p~e~~~kik~V~ERATLFKITS~AMInAc~efL~L 100 (266)
+.|.+..+.+++++..|..... ..+. .....=.-.|-++..|+++.|.|++.-
T Consensus 7 ~~i~~kl~~i~~~l~~l~~~~~---~~d~-~~~~av~~~l~~~~Ea~~di~~~ii~~ 59 (144)
T 1ylm_A 7 SKIEKTLGFFEHQLALFDSQTD---WQSE-IGELALQRIGHLLIECILDTGNDMIDG 59 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCC---SSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhh---ccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888888876211 1111 111122334667788899999877755
No 91
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.54 E-value=93 Score=23.27 Aligned_cols=12 Identities=25% Similarity=0.410 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhh
Q psy3495 25 LENIIKTLSVNL 36 (266)
Q Consensus 25 l~~~lR~LseKL 36 (266)
|...++.|...|
T Consensus 19 Le~~v~~le~~L 30 (72)
T 3cve_A 19 LEGQLSEMEQRL 30 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 92
>1g73_A SMAC/diablo, second mitochondria-derived activator of caspases; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: a.7.4.1
Probab=20.24 E-value=3.1e+02 Score=23.48 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=31.8
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHH-------h------------chhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3495 79 RATLFRITTNAMINSCGKYLEIAQ-------T------------QGGKWQRMLQHERDQRLKLEELLEQMA 130 (266)
Q Consensus 79 RATLFKITS~AMInAc~efL~La~-------q------------~e~kWqK~Lq~ErEQR~rLEE~lEqLA 130 (266)
-.|..-.|+.|+|+++.+|....- . ...-|+=++. +|...+...+.+.
T Consensus 30 ast~LSqTt~AlIda~teY~kal~tLiSL~~~y~a~lgkl~~~eeD~~WqvIi~----~R~E~~d~k~e~~ 96 (162)
T 1g73_A 30 TSTDLSQTTYALIEAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIG----ARAEMTSKHQEYL 96 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCTHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchHHHHHHHH----HHHHHHHHHHHHH
Confidence 556678899999999999987442 1 3445655544 7766665555443
Done!