RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3495
(266 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 2e-04
Identities = 37/187 (19%), Positives = 52/187 (27%), Gaps = 80/187 (42%)
Query: 32 LSV---NLEQLQSYNEIINKHGA-------AL---------------LRTL-SELESCDN 65
LS+ EQ+Q Y N H +L L L L
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 66 PQEL-QCQIKEINERATLF-----RITT----------NAMINS---------CGKYLEI 100
P L Q +I +ER F + + + +IN K ++I
Sbjct: 399 PSGLDQSRIP-FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 101 A--QTQGGKWQRMLQHERDQRLKLEELLEQMARCSTGPPVH-------------DSGP-- 143
T G D R+ + E++ C PV D GP
Sbjct: 458 PVYDTFDGS---------DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 144 --RLGGL 148
LG L
Sbjct: 509 ASGLGVL 515
Score = 38.5 bits (89), Expect = 0.002
Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 54/154 (35%)
Query: 111 MLQHERDQRLKLEELLEQMARCSTGPP---VHDS---GPR---LGGLP----------RE 151
ML + ++++ + + S P V S G + + G P R+
Sbjct: 338 MLSISNLTQEQVQDYVNKT--NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 152 EEAEDEEDS--VFYDANEVMTENGGLDPAGRGLLEPVRYPY-SPH--------------- 193
+A D + + ++ N L PV P+ S
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFL---------PVASPFHSHLLVPASDLINKDLVKN 446
Query: 194 ---FPSCSLMTQVYCIFSTDDEHDTDSSTSEVDE 224
F + + VY T D D + + E
Sbjct: 447 NVSFNAKDIQIPVY---DTFDGSDLRVLSGSISE 477
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.099
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 8/32 (25%)
Query: 115 ERDQRLKLEELLEQMARCSTGPPVHDSGPRLG 146
E+ KL+ L+ A DS P L
Sbjct: 18 EKQALKKLQASLKLYA-----D---DSAPALA 41
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.17
Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 44/133 (33%)
Query: 5 TIFSDFVSDEEDFEVDGEVKLE------NIIKTLSVNLEQLQSYNEIINKHGAALLRTLS 58
+F DF F E K+ N ++ L+QL+ Y I + R ++
Sbjct: 495 MVFLDF-----RFL---EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 59 ELESCDNPQELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQ 118
+ D L +I N + C KY ++ + L E +
Sbjct: 547 AIL--DF----------------LPKIEENLI---CSKYTDLL-------RIALMAEDEA 578
Query: 119 RLKLEELLEQMAR 131
EE +Q+ R
Sbjct: 579 --IFEEAHKQVQR 589
>3jrt_A Integron cassette protein VPC_CASS2; mobIle metagenome, structural
genomics, PSI-2 protein structure initiative; 2.30A
{Vibrio paracholerae}
Length = 192
Score = 28.2 bits (62), Expect = 2.0
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 79 RATLFRITTNAMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELL 126
R ++R+ +++ +C KY+E+ Q G ++Q ++ R +
Sbjct: 67 RQCIWRLCVYSIVINCRKYVELNQKYGKEFQALIPGHNHIRGVYNNEI 114
>2yle_A Protein spire homolog 1; actin-binding protein, actin
polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A
3rbw_A
Length = 229
Score = 28.2 bits (62), Expect = 2.2
Identities = 14/62 (22%), Positives = 23/62 (37%)
Query: 108 WQRMLQHERDQRLKLEELLEQMARCSTGPPVHDSGPRLGGLPREEEAEDEEDSVFYDANE 167
+ ER+ LE+L++ MA +D G +E E + S +
Sbjct: 132 YGLKENEERELSPPLEQLIDHMANTVEADGSNDEGYEAAEEGLGDEDEKRKISAIRSYRD 191
Query: 168 VM 169
VM
Sbjct: 192 VM 193
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 27.9 bits (63), Expect = 3.8
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 99 EIAQTQGGKWQRMLQHERDQRLKLEELLEQMA 130
E+A + GK R ++ R Q+ KLE + M
Sbjct: 265 EVALYRQGK-FREVKLARQQKSKLENMFANMT 295
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.9 bits (62), Expect = 4.2
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 24 KLENIIKTLSVNLEQLQSYNEIINKHGAALLRTLSEL-----ESCDNPQELQCQIKEINE 78
K E++I L V L++ + + + K L S+L E EL+ Q+ + E
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095
Query: 79 RATLFRITTN---AMINSCGKYLEIAQTQGGKWQRMLQHERDQRLKLEELLEQMAR 131
+ N+ K + ++ Q L+ E+ R K E+ ++
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSE 1151
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 27.7 bits (62), Expect = 4.7
Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 9/72 (12%)
Query: 39 LQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKE-----INERATLFRITTN--AMI 91
L + + L L E+ + ++ ++ N RI + A++
Sbjct: 157 LVRMVTVCAESLKTHLDRLEEVTNESGYVDVLTLLRRVMLDTSNT--LFLRIPLDESAIV 214
Query: 92 NSCGKYLEIAQT 103
Y + Q
Sbjct: 215 VKIQGYFDAWQA 226
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 27.9 bits (63), Expect = 4.8
Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 68 ELQCQIKEINERATLFRITTNAMINSCGKYLEIAQTQGGKW-----QRMLQHERDQRLKL 122
+L+ +++ ++E+ + +IA+ +W ++L+ ER++ L+L
Sbjct: 499 KLEAEVEALSEKLR-----GARFVRLEVTEEDIAEIVS-RWTGIPVSKLLEGEREKLLRL 552
Query: 123 EELLEQ 128
EE L +
Sbjct: 553 EEELHK 558
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute
respiratory syndrome, viral protein; 1.6A {Sars
coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Length = 77
Score = 25.7 bits (56), Expect = 5.6
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 29 IKTLSVNLEQLQSYNEIINKHGAALLRTLSELESCDNPQELQCQIKEINER 79
+ T S L +LQ ++N++ AL + +L S N + + +I R
Sbjct: 25 LTTTSTALGKLQD---VVNQNAQALNTLVKQLSS--NFGAISSVLNDILSR 70
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 27.3 bits (61), Expect = 6.8
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Query: 101 AQTQGGKWQRMLQHERDQRLK-----LEELLEQMARCS---TGPPVHDS 141
+ G + + +R RL L+ + +G +DS
Sbjct: 53 REDGGAALRALTYAQRAARLADIVKLLQAKRGDYYAIATANSGTTRNDS 101
>2yib_D RNA-directed RNA polymerase; transferase, reverse transcriptase,
IPNV; 3.80A {Infectious pancreatic necrosis virus}
Length = 770
Score = 27.3 bits (59), Expect = 7.2
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 182 LLEPVRYPYSPHFPSCSLMTQVYCIFSTDDEHDTDSSTSEVDEGVPNLPPRTSPSSLPPV 241
+L P P + + + ++ + E T V EG P+ P P
Sbjct: 59 ILRPRAIPTMVELETDAALPRLRQMV----EDGKLKDTVSVPEGTTAFYPKYYPFHKPDH 114
Query: 242 DENSTTPLP 250
DE T P
Sbjct: 115 DEVGTFGAP 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.131 0.380
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,059,433
Number of extensions: 235679
Number of successful extensions: 369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 30
Length of query: 266
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 174
Effective length of database: 4,133,061
Effective search space: 719152614
Effective search space used: 719152614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.4 bits)