RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3495
         (266 letters)



>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 27.9 bits (62), Expect = 0.32
 Identities = 8/37 (21%), Positives = 16/37 (43%)

Query: 27 NIIKTLSVNLEQLQSYNEIINKHGAALLRTLSELESC 63
            I ++    ++L S  +++ K    L   L +L  C
Sbjct: 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGGC 88


>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode
           (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 329

 Score = 27.5 bits (60), Expect = 1.9
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 161 VFYDAN--EVMTENGGLDPAGRGL-LEPVRYPYSPH---FPSCSL 199
             Y +   +   + G    A + L +EP  +  +P+   FP  SL
Sbjct: 267 HLYASKFLDCKGKKGEHYKANKALAIEPQFHSAAPNFDHFPDVSL 311


>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit
           gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 159

 Score = 26.7 bits (58), Expect = 2.1
 Identities = 6/28 (21%), Positives = 12/28 (42%)

Query: 11  VSDEEDFEVDGEVKLENIIKTLSVNLEQ 38
           V D E       +  + I+K L + + +
Sbjct: 132 VIDPESGNTLYILTHKRILKFLKLFITE 159


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0484    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 989,873
Number of extensions: 45420
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 9
Length of query: 266
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,254,276
Effective search space: 228278232
Effective search space used: 228278232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.4 bits)